RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy221
(205 letters)
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 174 bits (444), Expect = 5e-57
Identities = 37/101 (36%), Positives = 66/101 (65%)
Query: 29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG 88
+ + + K+ V++FMKG + +CGFS +++IL V Y++ D+L+DE +R G
Sbjct: 2 SSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQG 61
Query: 89 IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+K +++WPT PQ+++ G+ VGG DI+ +L +GEL+ L+
Sbjct: 62 LKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 174 bits (443), Expect = 7e-57
Identities = 49/102 (48%), Positives = 78/102 (76%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
+ ++ +++++V KVV+FMKG + P CGFSN VVQIL+ +VP++ ++L++E +R
Sbjct: 4 TPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQ 63
Query: 88 GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
G+KEY++WPT PQ++I GEF GGCDI L+ ++GEL E++EK
Sbjct: 64 GLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEK 105
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 173 bits (442), Expect = 9e-57
Identities = 39/102 (38%), Positives = 69/102 (67%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
+ +++ + + K+ V++FMKG + +CGFS +++IL V Y++ D+L+DE +R
Sbjct: 3 APKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 62
Query: 88 GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
G+K Y++WPT PQ+++ GE VGG DI+ +L ++GEL+ L
Sbjct: 63 GLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG 104
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame
87, Fe/S cluster, oxidoreductase, thioredoxin family,
GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens}
PDB: 2wul_A*
Length = 118
Score = 171 bits (435), Expect = 1e-55
Identities = 64/103 (62%), Positives = 85/103 (82%), Gaps = 1/103 (0%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIR 86
+ +D +VKK KVVVF+KG PE P+CGFSNAVVQILR+H V Y +++VL D +R
Sbjct: 6 GGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELR 65
Query: 87 NGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
GIK+Y++WPTIPQV++NGEFVGGCDILL++HQ+G+LVE+L+K
Sbjct: 66 QGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 108
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 170 bits (434), Expect = 1e-55
Identities = 41/108 (37%), Positives = 66/108 (61%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
D+ + ++ + ++FMKG P+ PRCGFS +V+IL H++ + S D+ DE +R
Sbjct: 2 KEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQ 61
Query: 88 GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRK 135
G+K Y+SWPT PQ++++GE +GG DI+ +L S EL K +
Sbjct: 62 GLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAAENLY 109
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 167 bits (425), Expect = 5e-54
Identities = 47/105 (44%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDES 84
ST+++K+I++ ++ + VV+FMKG PE P+CGFS A + +L V + +++VL+D
Sbjct: 2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPE 61
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+R GIKE++ WPTIPQ+++N EF+GGCD++ + +SGEL + LE+
Sbjct: 62 LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, transport, glutathione,
thioredoxin fold; HET: GSH; 1.90A {Escherichia coli}
PDB: 1yka_A
Length = 135
Score = 165 bits (420), Expect = 4e-53
Identities = 37/108 (34%), Positives = 67/108 (62%)
Query: 29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG 88
+ + I + ++ ++++MKG P+ P CGFS VQ L + D+L++ IR
Sbjct: 22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAE 81
Query: 89 IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
+ +Y +WPT PQ++++GE VGGCDI+++++Q GEL + +++ K K
Sbjct: 82 LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKS 129
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 120 bits (304), Expect = 1e-35
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK---DESIR 86
K E+ + VVVF K CG+ N V Q+L Y ++ + ++
Sbjct: 8 AALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQ 62
Query: 87 NGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+ + +T T+P VFI G+ +GGCD +++ HQ EL+ L+
Sbjct: 63 SALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQD 105
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 99.6 bits (249), Expect = 2e-27
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DVLKDES- 84
++++ + ++++S+VV+F K C S V ++ V + D + D +
Sbjct: 3 REELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGAR 57
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG---DQKRKQF 137
++ + E T+ T+P +F+N VGGCD + +QSG L + L++ D + F
Sbjct: 58 VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAENLYF 113
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 95.3 bits (238), Expect = 6e-26
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDS-----HDVLKDES-I 85
Q ++ ++ KVVVF+K P C F ++L D + I
Sbjct: 2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56
Query: 86 RNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
++ +++ T T+P+VFI E +GGC L +H+ GEL+ +L++
Sbjct: 57 QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron
transport, redox-active center, transport; HET: MES;
2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Length = 118
Score = 95.5 bits (238), Expect = 9e-26
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL-RMHDVPYDSHDVLK----- 81
S + K + +++ ++++ V K C + +A + L VP VL+
Sbjct: 11 SQETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMK 65
Query: 82 -DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
I+ + E T+P ++ING+ +GG D L +L ++GEL E LE
Sbjct: 66 EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP 114
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 85.5 bits (212), Expect = 6e-22
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR---MHDVPYDSHDVLKDE--- 83
+VQK ++ S +++F K C +S + ++L Y ++ K
Sbjct: 2 NVQKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGE 56
Query: 84 SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYI 143
++ IK T T+P + +NG GG + + KLH G+L+E L+ +
Sbjct: 57 ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSDGKFSVEQREKP 116
Query: 144 SG 145
S
Sbjct: 117 SN 118
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 85.0 bits (211), Expect = 8e-22
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES- 84
+ + +++SI + V ++ VV++ K C + V + + V ++ +
Sbjct: 3 SFGSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQ 57
Query: 85 ---IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
++ ++ T T+P VF+ G+ +GGC +KL++ G+L L + + K Q
Sbjct: 58 GPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANGKNGQ 112
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 84.3 bits (209), Expect = 2e-21
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DVLKD-ES 84
+T I E + + VV+F K C + ++ +V Y D+L+
Sbjct: 13 ATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 67
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK---GDQKRKQF 137
++ + + T T+P++F+NG F+GG +LH+ G+L+ + + KRK+F
Sbjct: 68 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEF 123
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion,
redox-activ transit peptide, transport, oxidoreductase;
1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A
3d5j_A*
Length = 129
Score = 84.0 bits (208), Expect = 3e-21
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 25 TPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL-RMHDVPYDSH-----D 78
S + + +++ + +V V K C + A + L + +VP D
Sbjct: 20 HMVSQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELD 74
Query: 79 VLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+ + S I++ ++E + T+P V+ING+ +GG L L ++G+L E L+
Sbjct: 75 EMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 126
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 84.4 bits (209), Expect = 3e-21
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 22 AWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DV 79
+ +T I E + + VV+F K C + ++ +V Y D+
Sbjct: 29 SSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDL 83
Query: 80 LKD-ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
L+ ++ + + T T+P++F+NG F+GG +LH+ G+L+ + + K+ +
Sbjct: 84 LEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 141
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 77.2 bits (191), Expect = 3e-19
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
+ V ++ K C + + +L V + + + + R + + + T+PQ+
Sbjct: 1 ANVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI 55
Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
FI+ + +GG D L L G L L+
Sbjct: 56 FIDAQHIGGYDDLYALDARGGLDPLLK 82
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite.,
electron trans oxidoreductase; 1.80A {Ectromelia virus}
PDB: 2hzf_A 2hze_B
Length = 114
Score = 78.5 bits (194), Expect = 3e-19
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK------DES 84
++ + + + +KV +F+K C F + IL +++++ +
Sbjct: 8 AEEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENE 62
Query: 85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+R+ ++ T T+P++F +GG LL++ L + L
Sbjct: 63 LRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSS 107
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 76.8 bits (190), Expect = 5e-19
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
V+++ + P C + +L ++ D +R ++E + T PQ+
Sbjct: 6 VDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI 60
Query: 102 FINGEFVGGCDILLKLHQSGELVEQLEKG 130
FI VGGCD L L G+L L+ G
Sbjct: 61 FIGSVHVGGCDDLYALEDEGKLDSLLKTG 89
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 80.5 bits (198), Expect = 3e-18
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 23 WRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-DVPYDSHDVLK 81
S + K + +++ ++++ V K C +S+A + L VP VL+
Sbjct: 242 GSGMVSQETIKHVKDLIAENEIFVASKTY-----CPYSHAALNTLFEKLKVPRSKVLVLQ 296
Query: 82 ------DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
I+ + E T+P ++ING+ +GG D L +L ++GEL E LE
Sbjct: 297 LNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP 350
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 74.2 bits (183), Expect = 7e-18
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG-IKEYTSWPTIPQ 100
+K+ ++ C F + +L+ V + + + D R ++PQ
Sbjct: 16 AKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQ 70
Query: 101 VFINGEFVGGCDILLKLHQSGELVEQLE 128
+FI+ + +GGCD + L +G+L L
Sbjct: 71 IFIDDQHIGGCDDIYALDGAGKLDPLLH 98
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 69.5 bits (171), Expect = 4e-16
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
+++++ + P C + +L V Y D + ++ T PQ+
Sbjct: 6 KEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDA-STSLRQEMVQRANGRNTFPQI 59
Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
FI VGGCD L L G+L L+
Sbjct: 60 FIGDYHVGGCDDLYALENKGKLDSLLQ 86
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 61.3 bits (149), Expect = 6e-13
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 42 SKVVVF---MKGVPE-APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP- 96
S + V+ + G E + + V +IL + Y D+ +D ++R+ ++ P
Sbjct: 2 SGLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK 58
Query: 97 -TIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
T PQ+ + G ++ ++ + L E L
Sbjct: 59 ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 60.4 bits (147), Expect = 4e-11
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-- 83
P + + + + V + V++F K C + V +L + + + ++ +
Sbjct: 2 PPADGTSQWLRKTVDSAAVILFSKT-----TCPYCKKVKDVLAEAKIKHATIELDQLSNG 56
Query: 84 -SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGD 131
+I+ + ++ T+PQ+F+ G+F+G +LK + + EL + +
Sbjct: 57 SAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 56.5 bits (136), Expect = 6e-11
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--------TSWPTIPQVFINGEFVGGCD 112
VV+ L + + ++ D+ E R + + P PQ+F + G D
Sbjct: 28 QDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYD 87
Query: 113 ILLKLHQSGELVEQL 127
+ +S + L
Sbjct: 88 SFFESKESNTVFSFL 102
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography, protein
binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Length = 121
Score = 54.6 bits (131), Expect = 3e-10
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 61 NAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCD 112
V+ L + + ++ D+ +E R ++E T +P PQ+F ++ G D
Sbjct: 20 QDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYD 79
Query: 113 ILLKLHQSGELVEQL 127
+ ++ + L
Sbjct: 80 AFFEARENNAVYAFL 94
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics
of infec diseases, csgid, oxidoreductase; HET: GSH;
2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 51.9 bits (125), Expect = 2e-09
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-------ESIRNGIKEYTSW 95
KV ++ + C + Q +++ +D + + + K
Sbjct: 5 KVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPI 59
Query: 96 PTIPQVFINGEFVGGCDILLKL 117
T+PQ+FI+ E +GG L
Sbjct: 60 STVPQIFIDDEHIGGFTELKAN 81
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 51.5 bits (124), Expect = 2e-09
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYT--SW 95
+ V+F + C + + D Y D+ + + +++
Sbjct: 2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56
Query: 96 PTIPQVFINGEFVGGCDILLKLHQ 119
T+PQ+F++ + +GG +
Sbjct: 57 ETVPQIFVDQQHIGGYTDFAAWVK 80
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 50.4 bits (121), Expect = 5e-09
Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
++ ++ + C +A + + ++ +V + ++ + +P V
Sbjct: 2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVI 55
Query: 103 INGEFVGGC--DILLKLHQSGELV 124
G D++ +LH +
Sbjct: 56 AGDLSWSGFRPDMINRLHPAPHAA 79
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 48.8 bits (117), Expect = 2e-08
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES-----IRNGIKEYTSWP 96
++V+++ C ++ L+ V ++ + K E + + +
Sbjct: 12 AEVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSY 66
Query: 97 TIPQVFINGEFVGGCD 112
++P V + V G +
Sbjct: 67 SVPVVVKGDKHVLGYN 82
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 47.6 bits (114), Expect = 4e-08
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
+ ++ K P C A + L + Y++ D+ D+ R+ + + P V
Sbjct: 2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVE 55
Query: 103 INGEFVGG--CDILLKLHQS 120
++GE G + + +L +
Sbjct: 56 VDGEHWSGFRPERIKQLQAA 75
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 44.8 bits (106), Expect = 8e-07
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG----------IKEYTSWPTIPQV 101
+CG + ++L + P++ +++ ++ + + ++ T+PQV
Sbjct: 9 SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQV 68
Query: 102 FI-NGEFVGGCDILLKL 117
F +G +GG D L +
Sbjct: 69 FAPDGSHIGGFDQLREY 85
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 44.3 bits (105), Expect = 6e-06
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIP 99
+ + +F K P C F Q+L + ++ + D +I ++ + T+P
Sbjct: 168 VQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDATIV-SVRAVSGRTTVP 221
Query: 100 QVFINGEFVGGCDIL 114
QVFI G+ +GG D L
Sbjct: 222 QVFIGGKHIGGSDDL 236
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 40.1 bits (94), Expect = 4e-05
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDV-----LKDESIRNGIKEYTS 94
+ KV+++ C + ++L V +D V ++E ++ +
Sbjct: 20 DRGKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNP 74
Query: 95 WPTIPQVFINGE-FVGGCD 112
+ P IN E + G
Sbjct: 75 SVSFPTTIINDEKAIVGFK 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.006
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 37/125 (29%)
Query: 16 NSRF--HNAWRTPYSTDVQKSIDEMVKKSKVVVF-MKGVPEAPRCGFSNAVVQILRMHDV 72
N F +N R +++++ E+ V++ + G G + + + + V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------SGKTWVALDVCLSYKV 176
Query: 73 PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC---DILLKLHQSGELVEQLEK 129
+ I W +N + C + +L++ Q L+ Q++
Sbjct: 177 ---------QCKMDFKI----FW-------LN---LKNCNSPETVLEMLQK--LLYQIDP 211
Query: 130 GDQKR 134
R
Sbjct: 212 NWTSR 216
Score = 35.2 bits (80), Expect = 0.011
Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 69/163 (42%)
Query: 23 WRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD 82
W +DV ++++ K S V K
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS-----------------------------------LVEKQ 420
Query: 83 ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINY 142
KE T +IP +++ E + LH+S +V+ Y
Sbjct: 421 P------KESTI--SIPSIYL--ELKVKLENEYALHRS--IVDH---------------Y 453
Query: 143 ISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEE 185
+ + ++ P D Y H H+ + E
Sbjct: 454 ---NIPKTFDSDDLIPPY-LDQ---YFYSHIGHHLKNIEHPER 489
Score = 27.9 bits (61), Expect = 2.7
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 59 FSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH 118
F +A V DV +L E I + I + ++F LL
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---------WTLLS-- 73
Query: 119 QSGELVEQ-LEKGDQKRKQFIL--INYISGDAVRCYEC-SSAQDPKGEDNCGAYSKFHKE 174
+ E+V++ +E+ + +F++ I +D DN ++K++
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVS 132
Query: 175 RH 176
R
Sbjct: 133 RL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.017
Identities = 29/149 (19%), Positives = 43/149 (28%), Gaps = 57/149 (38%)
Query: 4 FLQRCMLPR-----LAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCG 58
F +R + L + S FH + I++ + K+ V
Sbjct: 409 FSER--KLKFSNRFLPVASPFH----SHLLVPASDLINKDLVKNNVS------------- 449
Query: 59 FSNAVVQILRMHDVP-YDSHD-----VLKDESIRNGIKEYTS----WPTIPQ-------V 101
F+ +QI P YD+ D VL + W T Q
Sbjct: 450 FNAKDIQI------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 102 FINGEFVGGCDILLKLHQSGELVEQLEKG 130
F G GG L G L + + G
Sbjct: 504 F--GP--GGASGL------GVLTHRNKDG 522
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 29.0 bits (64), Expect = 0.93
Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 32/122 (26%)
Query: 28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----------HDVPYDSH 77
++++ + + + + P C + V + M + ++
Sbjct: 126 EDATKEALKSLKGRVHIETII-----TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAV 180
Query: 78 DVL--KDESIRNGIKEYTSWPTIPQVFINGE--FVGGCDILLKLHQSGELVEQLEKGDQK 133
+ D + + G+ ++P + ING FVG + ++ ++ +
Sbjct: 181 EAYENPDIADKYGVM------SVPSIAINGYLVFVGVPYE-------EDFLDYVKSAAEG 227
Query: 134 RK 135
R
Sbjct: 228 RL 229
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 29.2 bits (66), Expect = 1.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 63 VVQILRMHDV--PYDSHD-----VLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
VVQ L + V P H ++E + +P VF+NG+ G + L
Sbjct: 135 VVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVM------GVPAVFVNGKEFGQGRMTL 188
Query: 116 KLHQSGELVEQLEKGDQKRKQ 136
E+V +++ G +KR
Sbjct: 189 -----TEIVAKVDTGAEKRAA 204
>3zuc_A Cellulosomal scaffoldin; crystalline cellulose-binding protein,
sugar binding protein cellulosome; HET: EDO 1PE; 1.00A
{Acetivibrio cellulolyticus} PDB: 3zu8_A* 3zqw_A*
Length = 153
Score = 28.0 bits (62), Expect = 1.3
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 67 LRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
R + +++ D S + YTSW + + + G
Sbjct: 108 GRFAKSDWTNYNQADDYSFNSSATTYTSWDKVT-AYSAEGLIWG 150
>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated
protein, indomethacin, isomerase; HET: IMN; 2.60A
{Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB:
2pbj_A*
Length = 290
Score = 27.9 bits (61), Expect = 2.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 57 CGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN 104
C F + V L H +PY +V + +R IK +S+ +P +
Sbjct: 23 CPFCSKVRAFLDFHALPYQVVEV--NPVLRAEIKF-SSYRKVPILVAQ 67
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 27.7 bits (61), Expect = 3.1
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 26/91 (28%)
Query: 33 KSIDEMVKKSKVVV--FMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESI----- 85
K+ + KK +V+ + P + Q + + VL+D+ +
Sbjct: 21 KNYKNVFKKYEVLALLYH-----EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLV 75
Query: 86 ----------RNGIKEYTSWPTIPQVFINGE 106
+ G+ E +I VF E
Sbjct: 76 DSEKDAAVAKKLGLTEE---DSI-YVFKEDE 102
>2xbt_A Cellulosomal scaffoldin; sugar binding protein; 1.83A {Bacteroides
cellulosolvens}
Length = 160
Score = 26.9 bits (59), Expect = 3.2
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 58 GFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
S +Q R+ + + D D S + ++ + V+ NG V G
Sbjct: 107 SQSEVTIQG-RVAKADWTNVDQSNDYSYPGSMSQFGENKLVA-VYYNGALVYG 157
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for
structural genomics of infectious diseases, csgid,
oxidoreductase; HET: MSE GSH; 1.20A {Salmonella
enterica subsp} PDB: 1g7o_A
Length = 218
Score = 26.4 bits (58), Expect = 5.5
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKDE 83
C F I + ++P + + + D+
Sbjct: 10 DHCPFCVKARMIFGLKNIPVELNVLQNDD 38
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway,
aromatic amino acid biosynthesis, lyase, sulphonamide;
HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A*
2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Length = 176
Score = 26.0 bits (58), Expect = 7.2
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 110 GCDILLKLHQS---GELVEQLEKGDQKRKQFILIN 141
D+ L+ Q+ GE+++++++ + I+IN
Sbjct: 51 NLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIIN 85
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A
{Thermus thermophilus}
Length = 149
Score = 25.9 bits (58), Expect = 7.5
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 112 DILLKLHQS---GELVEQLEKGDQKRKQFILIN 141
+ + Q+ G+L+E +++ Q+ I++N
Sbjct: 41 GLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLN 73
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 25.3 bits (56), Expect = 9.4
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKD 82
P C L H++P+ ++ +
Sbjct: 9 PSCTSCRKARAWLEEHEIPFVERNIFSE 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,081,030
Number of extensions: 172413
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 55
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)