RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy221
(205 letters)
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 118 bits (297), Expect = 3e-35
Identities = 37/100 (37%), Positives = 65/100 (65%)
Query: 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGI 89
+ + K+ V++FMKG + +CGFS +++IL V Y++ D+L+DE +R G+
Sbjct: 3 SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 62
Query: 90 KEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
K +++WPT PQ+++ G+ VGG DI+ +L +GEL+ L+
Sbjct: 63 KTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 82.8 bits (204), Expect = 2e-21
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR-----MHDVPYDSHDVLKDESIR 86
Q ++ ++ KVVVF+K P C F ++L + + D +
Sbjct: 2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56
Query: 87 NG-IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
+++ T T+P+VFI E +GGC L +H+ GEL+ +L++
Sbjct: 57 QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli, Grx3 [TaxId: 562]}
Length = 82
Score = 81.9 bits (202), Expect = 2e-21
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
+ V ++ K C + + +L V + + + + R + + + T+PQ+
Sbjct: 1 ANVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI 55
Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
FI+ + +GG D L L G L L+
Sbjct: 56 FIDAQHIGGYDDLYALDARGGLDPLLK 82
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 72.6 bits (178), Expect = 1e-17
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 42 SKVVVF---MKGVPE-APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP- 96
S + V+ + G E + + V +IL + Y D+ +D ++R+ ++ P
Sbjct: 2 SGLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK 58
Query: 97 -TIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
T PQ+ + G ++ ++ + L E L
Sbjct: 59 ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 67.3 bits (164), Expect = 6e-16
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100
+ + +F K P C F Q+L + ++ + D + ++ + T+PQ
Sbjct: 4 QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQ 57
Query: 101 VFINGEFVGGCDILLK 116
VFI G+ +GG D L K
Sbjct: 58 VFIGGKHIGGSDDLEK 73
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 63.1 bits (153), Expect = 3e-14
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWP- 96
+ V+F + C + + D Y D+ + + +++ P
Sbjct: 2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56
Query: 97 -TIPQVFINGEFVGGCDILLKLHQ 119
T+PQ+F++ + +GG +
Sbjct: 57 ETVPQIFVDQQHIGGYTDFAAWVK 80
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Bacteriophage T4 [TaxId: 10665]}
Length = 87
Score = 63.2 bits (153), Expect = 4e-14
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 51 VPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIK----------EYTSWPTIPQ 100
+CG + ++L + P++ +++ ++ + + K + T+PQ
Sbjct: 8 DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQ 67
Query: 101 VFI-NGEFVGGCDILLKLHQ 119
VF +G +GG D L + +
Sbjct: 68 VFAPDGSHIGGFDQLREYFK 87
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 58.2 bits (140), Expect = 2e-12
Identities = 9/80 (11%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
++ ++ + C +A + + ++ +V + ++ + +P V
Sbjct: 2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR-AQGFRQLPVVI 55
Query: 103 INGEFVGGC--DILLKLHQS 120
G D++ +LH +
Sbjct: 56 AGDLSWSGFRPDMINRLHPA 75
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 56.2 bits (135), Expect = 1e-11
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
+ ++ K P C A + L + Y++ D+ D+ R+ + + P V
Sbjct: 2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALG-YVQAPVVE 55
Query: 103 INGEFVGG--CDILLKLH 118
++GE G + + +L
Sbjct: 56 VDGEHWSGFRPERIKQLQ 73
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 31.6 bits (71), Expect = 0.016
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN-G 88
+ + I ++ + + + C VVQ L + V +
Sbjct: 5 SLLEQIRDIDGDFEFETYY-----SLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN 59
Query: 89 IKEYTSWPTIPQVFINGE--FVGGCDILLKLHQSGELVEQLEKG 130
+ +P VF+NG+ G + E+V +++ G
Sbjct: 60 EITERNVMGVPAVFVNGKEFGQGRMTL-------TEIVAKVDTG 96
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 114
Score = 26.1 bits (57), Expect = 1.4
Identities = 8/28 (28%), Positives = 8/28 (28%)
Query: 55 PRCGFSNAVVQILRMHDVPYDSHDVLKD 82
C L H V YD HD
Sbjct: 8 KACDTMKKARTWLDEHKVAYDFHDYKAV 35
>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III
[TaxId: 4577]}
Length = 81
Score = 24.2 bits (52), Expect = 5.5
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 54 APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDI 113
P V +L + ++ V + P + G+ D
Sbjct: 8 MPLSPNVVRVATVLNEKGLDFEIVPV-------DLTTGAHKQPDFLALNPFGQIPALVDG 60
Query: 114 LLKLHQSGELVEQLE 128
L +S + +
Sbjct: 61 DEVLFESRAINRYIA 75
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 24.9 bits (54), Expect = 7.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 1 MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSK 43
MNT++ P+ N WR PY + E+V +
Sbjct: 32 MNTYI---YGPKDDPYHSAPN-WRLPYPDKEAAQLQELVAVAN 70
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei
[TaxId: 5691]}
Length = 265
Score = 24.6 bits (53), Expect = 9.5
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 83 ESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
+ + +K+ + ++ +NGE G
Sbjct: 85 RILNDLLKQKYGLSRVGRLVLNGELFGAK 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 768,601
Number of extensions: 34637
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 19
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)