BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2211
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97363|SPTC2_MOUSE Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2
Length = 560
Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 2 YPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGT-ESTC 60
+ LY+ F FY+R +Y RI D +NRP+ SVPGA + I +R++ DY W+FKYTG
Sbjct: 109 FVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGAKVDIMERKSHDYNWSFKYTGNIIKGV 168
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
+N+ SYNYLGF NTG C E + E +K+ G +CS EI
Sbjct: 169 INMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEI 208
>sp|O54694|SPTC2_CRIGR Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2
SV=1
Length = 560
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 2 YPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGT-ESTC 60
+ LY+ F FY+R +Y RI D +NRP+ SVPGA + I +R++ DY W+FKYTG
Sbjct: 109 FVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGV 168
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
+N+ SYNYLGF NTG C E + E +K+ G +CS EI
Sbjct: 169 INMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEI 208
>sp|O15270|SPTC2_HUMAN Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1
Length = 562
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 2 YPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGT-ESTC 60
+ LY+ F FY+R +Y RI D +NRP+ SVPGA + I +R++ DY W+FKYTG
Sbjct: 111 FVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGV 170
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
+N+ SYNYLGF NTG C E + + +++ G +CS EI
Sbjct: 171 INMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEI 210
>sp|Q9XVI6|SPTC3_CAEEL Serine palmitoyltransferase 3 OS=Caenorhabditis elegans GN=sptl-3
PE=3 SV=2
Length = 512
Score = 96.7 bits (239), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 13 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG 72
Y+ ++YR+ D NRP++ VPGAI+ +KDR T D+GWT KYTGTES +NL SYNYLGF
Sbjct: 89 YTDHIYRQSTDVVNRPISGVPGAIVRLKDRYTDDHGWTQKYTGTESEVINLGSYNYLGFS 148
Query: 73 ENTGLCTERSKESVKQSG 90
+G+C E + + + G
Sbjct: 149 HRSGVCAEAAAAHIDKYG 166
>sp|Q09925|LCB2_SCHPO Serine palmitoyltransferase 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=lcb2 PE=3 SV=1
Length = 603
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%)
Query: 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 60
GY LY F FY R + RI DCF+RP VPG +I + +R + D TFK TG S
Sbjct: 130 GYAPLYNHFDNFYVRRLQHRINDCFSRPTMGVPGRVIRLMNRYSTDSNSTFKLTGDTSLA 189
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCS 95
LN++SYNYLGF ++ G C + +E++++ G + CS
Sbjct: 190 LNVSSYNYLGFAQSHGPCATKVEEAMQKYGLSTCS 224
>sp|Q20375|SPTC2_CAEEL Serine palmitoyltransferase 2 OS=Caenorhabditis elegans GN=sptl-2
PE=2 SV=1
Length = 558
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 5 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLA 64
L+ F FY R Y ++ D F RP+ SVPGA + + DR + D WT++Y GT + +N+
Sbjct: 120 LFSDFEAFYQRNCYIKVRDVFERPICSVPGATVDLVDRVSHDGNWTYEYPGTRTNVINVG 179
Query: 65 SYNYLGFGENTGLCTERSKESVKQSGCALCSPSGE 99
SYNYLGF ++ G C E+S S+ + G + C+ E
Sbjct: 180 SYNYLGFAQSAGPCAEQSASSIDREGLSCCTTVHE 214
>sp|Q9M304|LCB2B_ARATH Long chain base biosynthesis protein 2b OS=Arabidopsis thaliana
GN=LCB2b PE=1 SV=1
Length = 489
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 50/84 (59%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY R +Y RI DCF RP++S P A I + +R + D T K T S CLNL SYNYLGF
Sbjct: 54 FYIRRLYHRIQDCFGRPISSAPDAWIDVVERVSDDNNKTLKRTTKTSRCLNLGSYNYLGF 113
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
G CT R ES+K+ + CS
Sbjct: 114 GSFDEYCTPRVIESLKKFSASTCS 137
>sp|Q5JK39|LCB2D_ORYSJ Long chain base biosynthesis protein 2d OS=Oryza sativa subsp.
japonica GN=Os01g0928800 PE=2 SV=1
Length = 489
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 47/84 (55%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY+R +Y RI DCF RP+ S P A + +R + D T T S CLNL SYNYLGF
Sbjct: 54 FYTRRLYLRIQDCFGRPIASAPDAWFDVVERYSNDSNKTLHRTTKTSKCLNLGSYNYLGF 113
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
CT R ES+K+ + CS
Sbjct: 114 AAADEYCTPRVIESLKKYSASTCS 137
>sp|P48241|LCB2_KLULA Serine palmitoyltransferase 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=LCB2 PE=3 SV=2
Length = 562
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 54/100 (54%)
Query: 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 60
G + F FY R + +RI DCF+RP T VPG I DR + + F Y GT S C
Sbjct: 97 GLAPWFSTFESFYVRRLKQRIDDCFSRPTTGVPGRFIRCLDRVSHNLNDYFTYPGTTSMC 156
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
LNL+SYNYLGF ++ G CT + E+ + G P I
Sbjct: 157 LNLSSYNYLGFAQSEGQCTTAALEATDKYGVYSGGPRTRI 196
>sp|Q9LSZ9|LCB2A_ARATH Long chain base biosynthesis protein 2a OS=Arabidopsis thaliana
GN=LCB2a PE=1 SV=1
Length = 489
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 49/84 (58%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY R +Y RI DCF RP++S P A + +R + D T K T S CLNL SYNYLGF
Sbjct: 54 FYIRRLYHRIQDCFERPISSAPDAWFDVVERYSNDNNKTLKRTTKTSRCLNLGSYNYLGF 113
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
G CT R ES+K+ + CS
Sbjct: 114 GSFDEYCTPRVIESLKKFSASTCS 137
>sp|P40970|LCB2_YEAST Serine palmitoyltransferase 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=LCB2 PE=1 SV=1
Length = 561
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 54/100 (54%)
Query: 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 60
G + F FY R + RI DCF+RP T VPG I DR + + F Y+G C
Sbjct: 98 GLAPWFSNFESFYVRRIKMRIDDCFSRPTTGVPGRFIRCIDRISHNINEYFTYSGAVYPC 157
Query: 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
+NL+SYNYLGF ++ G CT+ + ESV + P +I
Sbjct: 158 MNLSSYNYLGFAQSKGQCTDAALESVDKYSIQSGGPRAQI 197
>sp|Q54EX5|SPTC2_DICDI Serine palmitoyltransferase 2 OS=Dictyostelium discoideum GN=sptB
PE=1 SV=1
Length = 490
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTES-T 59
GY L+ +F FY R +Y RI D ++RP+ S+ GA I + R + Y + TG ++
Sbjct: 52 GYAPLFVEFEYFYQRRMYGRIKDAWDRPINSIAGAWIDVMPRASKHYSQRLELTGGKTIK 111
Query: 60 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
CLNL SYNYLGF +N G ++ +S+ + G S S E+
Sbjct: 112 CLNLGSYNYLGFAQNEGPVADKVIDSIYKYGVYTGSTSAEV 152
>sp|Q8RYL0|LCB2C_ORYSJ Long chain base biosynthesis protein 2c OS=Oryza sativa subsp.
japonica GN=Os01g0928700 PE=3 SV=1
Length = 497
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 45/84 (53%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY R RR+ DCF RP+ S P A + +R + D T T S CLNL SYNYLGF
Sbjct: 62 FYYRRFVRRVQDCFWRPIASKPDAWFDVVERYSNDSNKTLHRTTKTSRCLNLGSYNYLGF 121
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
CT R ES+K+ + CS
Sbjct: 122 AAADEYCTPRVIESLKKYSASTCS 145
>sp|Q8RYL1|LCB2B_ORYSJ Long chain base biosynthesis protein 2b OS=Oryza sativa subsp.
japonica GN=Os01g0928600 PE=2 SV=1
Length = 499
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY R +RR+ DCF RP+ S P A + +R + D T T S CLNLAS+NYLGF
Sbjct: 65 FYIRRFFRRVQDCFGRPIASKPDAWFDVVERYSTDSNKTLHCTTKTSKCLNLASFNYLGF 124
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
CT R ES+K+ + CS
Sbjct: 125 AAADEYCTPRVIESLKKYSASTCS 148
>sp|Q2R3K3|LCB2A_ORYSJ Long chain base biosynthesis protein 2a OS=Oryza sativa subsp.
japonica GN=Os11g0516000 PE=2 SV=1
Length = 488
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%)
Query: 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 71
FY R +Y RI DCF RP+ S P A + +R + D T K T + CLNL SYNYLGF
Sbjct: 54 FYVRRLYLRIQDCFGRPIASAPDAWFDVVERYSNDSNKTLKRTSNTTRCLNLGSYNYLGF 113
Query: 72 GENTGLCTERSKESVKQSGCALCS 95
CT ES+K+ + CS
Sbjct: 114 AAADEYCTPLVIESLKKYSPSTCS 137
>sp|Q9NUV7|SPTC3_HUMAN Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3
Length = 552
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 5 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTG-TESTCLNL 63
LY+ F FY+R +Y RI D +NRP+ S PG + + +R + DY WTF++TG +N+
Sbjct: 106 LYQDFENFYTRNLYMRIRDNWNRPICSAPGPLFDLMERVSDDYNWTFRFTGRVIKDVINM 165
Query: 64 ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
SYN+LG K+ ++ G + S E+
Sbjct: 166 GSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEM 202
>sp|Q8BG54|SPTC3_MOUSE Serine palmitoyltransferase 3 OS=Mus musculus GN=Sptlc3 PE=2 SV=1
Length = 563
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 5 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTE-STCLNL 63
LY+ F FY R +Y RI D ++ V S P + + ++ T DY WTF++TG +N+
Sbjct: 106 LYQDFENFYKRNLYMRIRDSWSHTVCSAPEPYMNVMEKVTDDYNWTFRHTGKVIENIINM 165
Query: 64 ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
ASYNYLG R K+++++ G + S E+
Sbjct: 166 ASYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEM 202
>sp|Q3MHG1|SPTC1_BOVIN Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1
Length = 473
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98
C+N AS+N+LG +N L + S+K+ G C P G
Sbjct: 100 CINFASFNFLGLLDNPRL-KAAALASLKKYGVGTCGPRG 137
>sp|Q9QEJ5|POLG_PESV Genome polyprotein OS=Porcine enteric sapovirus (isolate Swine/United
States/Cowden/1980) GN=ORF1 PE=1 SV=1
Length = 2254
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 16 YVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTF 51
YVY+ +++ F T+V A++TI+ R PD+G+T
Sbjct: 1892 YVYQPLINPFE---TAVSAAMVTIETRPGPDFGFTL 1924
>sp|Q5R9T5|SPTC1_PONAB Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1
Length = 473
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98
C+N AS+N+LG +N + + S+K+ G C P G
Sbjct: 100 CINFASFNFLGLLDNPRV-KAAALASLKKYGVGTCGPRG 137
>sp|Q60HD1|SPTC1_MACFA Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2
SV=1
Length = 473
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98
C+N AS+N+LG +N + + S+K+ G C P G
Sbjct: 100 CINFASFNFLGLLDNPRV-KAAALASLKKYGVGTCGPRG 137
>sp|O15269|SPTC1_HUMAN Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1
Length = 473
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98
C+N AS+N+LG +N + + S+K+ G C P G
Sbjct: 100 CINFASFNFLGLLDNPRV-KAAALASLKKYGVGTCGPRG 137
>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
Length = 475
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 57 ESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEI 100
E+ C L N L + + L + +K+S+ Q+ A+CSP E+
Sbjct: 143 EAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGDEV 186
>sp|A7HMM1|BIOF_FERNB 8-amino-7-oxononanoate synthase OS=Fervidobacterium nodosum
(strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1307
PE=3 SV=1
Length = 395
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 34 GAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQS 89
G I I+ E+P W LNL S NYLGF + ER K++ K++
Sbjct: 18 GLYINIRTLESPQGAWIVV---NGKRVLNLCSNNYLGFASD-----ERLKQAAKKA 65
>sp|A5E8G8|MNMG_BRASB tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=mnmG PE=3 SV=1
Length = 625
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 37 ITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTE 80
+TI E YG T G + L +Y +GF E G+ E
Sbjct: 483 VTITPNEAAKYGLTLNRDGQRRSAFELMAYPEIGFSEVRGIWPE 526
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,975,558
Number of Sequences: 539616
Number of extensions: 1544629
Number of successful extensions: 2308
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2283
Number of HSP's gapped (non-prelim): 25
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)