Query psy2211
Match_columns 100
No_of_seqs 152 out of 1390
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:03:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1357|consensus 100.0 2.8E-36 6.1E-41 242.6 7.8 100 1-100 79-178 (519)
2 PLN02483 serine palmitoyltrans 100.0 2.8E-35 6.1E-40 237.8 10.3 99 1-99 43-141 (489)
3 COG0156 BioF 7-keto-8-aminopel 99.6 7.4E-15 1.6E-19 117.3 6.9 74 8-98 2-78 (388)
4 KOG1359|consensus 99.4 3.9E-13 8.5E-18 105.5 4.9 58 26-98 49-106 (417)
5 PLN02955 8-amino-7-oxononanoat 99.4 5.8E-13 1.2E-17 108.8 4.9 45 53-98 97-141 (476)
6 PRK13393 5-aminolevulinate syn 99.3 8.1E-12 1.8E-16 97.9 6.6 78 10-98 4-84 (406)
7 TIGR01821 5aminolev_synth 5-am 99.3 1.1E-11 2.4E-16 96.8 6.7 40 58-98 45-84 (402)
8 KOG1358|consensus 99.2 9.8E-12 2.1E-16 100.0 4.1 40 58-98 94-133 (467)
9 PRK09064 5-aminolevulinate syn 99.2 4.7E-11 1E-15 93.2 6.9 42 56-98 44-85 (407)
10 PLN03227 serine palmitoyltrans 99.2 1.9E-11 4.2E-16 96.4 3.1 37 61-98 1-37 (392)
11 PRK07505 hypothetical protein; 99.0 5.7E-10 1.2E-14 87.4 6.5 79 11-97 5-85 (402)
12 TIGR01822 2am3keto_CoA 2-amino 99.0 1.7E-09 3.7E-14 83.5 7.9 66 16-97 11-76 (393)
13 PLN02822 serine palmitoyltrans 99.0 1E-09 2.3E-14 89.0 5.8 45 51-98 104-148 (481)
14 PRK13392 5-aminolevulinate syn 98.9 3.3E-09 7.2E-14 83.2 7.3 71 17-98 15-85 (410)
15 PRK05937 8-amino-7-oxononanoat 98.9 1.2E-09 2.6E-14 84.9 4.6 40 58-98 4-50 (370)
16 KOG1360|consensus 98.9 2.4E-09 5.2E-14 87.0 5.4 40 58-98 171-210 (570)
17 PRK07179 hypothetical protein; 98.8 2.5E-08 5.5E-13 78.1 7.7 41 56-97 52-92 (407)
18 cd06454 KBL_like KBL_like; thi 98.4 3.3E-07 7.1E-12 69.2 3.8 36 58-94 1-36 (349)
19 TIGR00858 bioF 8-amino-7-oxono 98.3 1.9E-06 4E-11 65.1 5.7 53 27-96 1-53 (360)
20 PRK05958 8-amino-7-oxononanoat 97.7 8.3E-05 1.8E-09 56.8 5.9 56 25-97 22-77 (385)
21 TIGR01825 gly_Cac_T_rel pyrido 97.6 0.00017 3.6E-09 55.5 6.2 60 18-94 9-68 (385)
22 TIGR03576 pyridox_MJ0158 pyrid 97.6 3.9E-05 8.4E-10 60.0 2.6 24 66-90 27-50 (346)
23 PRK06939 2-amino-3-ketobutyrat 97.6 0.00044 9.5E-09 53.1 7.8 52 29-96 28-79 (397)
24 TIGR00707 argD acetylornithine 97.0 0.00093 2E-08 51.3 4.4 51 24-91 8-61 (379)
25 TIGR03246 arg_catab_astC succi 96.8 0.0028 6.2E-08 49.9 5.2 30 58-89 35-67 (397)
26 PRK02936 argD acetylornithine 96.6 0.003 6.5E-08 48.8 4.2 48 26-90 12-62 (377)
27 PRK13034 serine hydroxymethylt 96.5 0.0015 3.3E-08 52.1 2.0 36 58-98 29-65 (416)
28 TIGR01885 Orn_aminotrans ornit 96.4 0.0072 1.5E-07 47.4 5.4 49 28-93 22-73 (401)
29 PRK12381 bifunctional succinyl 96.4 0.0065 1.4E-07 48.0 5.1 46 27-89 23-71 (406)
30 PRK00854 rocD ornithine--oxo-a 96.2 0.011 2.5E-07 46.1 5.6 57 23-96 21-80 (401)
31 PRK03244 argD acetylornithine 95.9 0.011 2.4E-07 46.1 4.2 34 58-93 43-79 (398)
32 PRK05093 argD bifunctional N-s 95.9 0.015 3.2E-07 45.8 4.8 49 25-90 22-73 (403)
33 cd00610 OAT_like Acetyl ornith 95.9 0.012 2.6E-07 45.6 4.1 31 58-89 36-68 (413)
34 PRK04260 acetylornithine amino 95.6 0.02 4.3E-07 44.5 4.5 33 58-91 29-62 (375)
35 PRK03715 argD acetylornithine 95.6 0.024 5.2E-07 45.0 5.0 33 58-92 36-71 (395)
36 PRK01278 argD acetylornithine 95.6 0.02 4.3E-07 44.6 4.4 44 28-88 16-62 (389)
37 PTZ00125 ornithine aminotransf 95.5 0.02 4.4E-07 44.5 4.2 53 25-94 13-68 (400)
38 PLN02760 4-aminobutyrate:pyruv 94.7 0.042 9.2E-07 45.4 4.1 33 58-92 89-124 (504)
39 PRK06082 4-aminobutyrate amino 94.4 0.058 1.3E-06 43.9 4.1 35 58-93 72-107 (459)
40 PRK08117 4-aminobutyrate amino 93.8 0.097 2.1E-06 41.8 4.2 36 58-95 43-81 (433)
41 PLN02624 ornithine-delta-amino 93.5 0.12 2.5E-06 42.2 4.2 34 58-93 75-111 (474)
42 TIGR00508 bioA adenosylmethion 93.2 0.12 2.7E-06 41.5 4.0 33 58-92 45-80 (427)
43 PRK00062 glutamate-1-semialdeh 93.0 0.19 4.1E-06 40.2 4.8 34 54-92 48-84 (426)
44 PRK12403 putative aminotransfe 90.3 0.35 7.7E-06 39.3 3.6 34 58-93 54-90 (460)
45 PRK02627 acetylornithine amino 90.2 0.5 1.1E-05 36.5 4.3 31 58-90 39-72 (396)
46 TIGR02539 SepCysS Sep-tRNA:Cys 86.9 0.36 7.8E-06 37.5 1.5 23 76-98 18-40 (370)
47 PF00155 Aminotran_1_2: Aminot 84.1 1.3 2.8E-05 33.6 3.3 28 59-87 2-29 (363)
48 PRK06149 hypothetical protein; 80.6 2.2 4.7E-05 38.0 3.8 32 58-91 585-617 (972)
49 PRK04073 rocD ornithine--oxo-a 80.0 5.6 0.00012 31.2 5.6 34 58-93 40-76 (396)
50 cd06452 SepCysS Sep-tRNA:Cys-t 78.8 0.97 2.1E-05 34.7 1.0 25 74-98 9-33 (361)
51 PLN03226 serine hydroxymethylt 75.7 2.4 5.2E-05 34.8 2.5 36 58-98 34-71 (475)
52 PLN02974 adenosylmethionine-8- 70.3 18 0.00039 32.1 6.7 88 4-92 298-401 (817)
53 COG0160 GabT 4-aminobutyrate a 69.3 18 0.0004 29.9 6.3 51 25-90 38-89 (447)
54 TIGR01141 hisC histidinol-phos 67.5 7.1 0.00015 29.5 3.3 28 58-87 19-46 (346)
55 PRK06105 aminotransferase; Pro 67.4 9.4 0.0002 31.1 4.2 32 58-91 48-82 (460)
56 PRK09264 diaminobutyrate--2-ox 66.6 21 0.00046 28.5 6.0 48 27-91 23-73 (425)
57 cd00378 SHMT Serine-glycine hy 65.0 4.4 9.4E-05 31.4 1.8 36 58-98 20-56 (402)
58 PRK08593 4-aminobutyrate amino 64.2 13 0.00029 30.0 4.5 46 29-91 28-76 (445)
59 PRK06541 hypothetical protein; 59.9 18 0.0004 29.4 4.6 32 58-91 52-86 (460)
60 PRK00950 histidinol-phosphate 59.3 12 0.00025 28.5 3.2 28 58-88 34-62 (361)
61 PRK00615 glutamate-1-semialdeh 59.3 16 0.00035 29.6 4.2 29 58-88 53-84 (433)
62 TIGR02407 ectoine_ectB diamino 58.7 39 0.00085 26.9 6.2 48 27-91 19-69 (412)
63 PRK02731 histidinol-phosphate 56.4 15 0.00033 28.0 3.4 28 58-88 32-60 (367)
64 PRK07986 adenosylmethionine--8 56.2 18 0.00038 29.3 3.9 31 58-90 43-76 (428)
65 PRK06173 adenosylmethionine--8 55.2 16 0.00035 29.5 3.5 31 58-90 44-77 (429)
66 PRK07482 hypothetical protein; 55.1 17 0.00036 29.6 3.6 30 58-89 50-82 (461)
67 PF11015 DUF2853: Protein of u 54.7 11 0.00025 25.3 2.1 23 69-92 58-80 (102)
68 PRK07046 aminotransferase; Val 53.3 24 0.00051 28.8 4.2 34 53-88 72-106 (453)
69 PRK08088 4-aminobutyrate amino 52.8 23 0.0005 28.1 4.0 31 58-90 41-74 (425)
70 PRK05964 adenosylmethionine--8 52.5 27 0.00058 27.7 4.3 31 58-90 42-75 (423)
71 PRK07036 hypothetical protein; 52.0 26 0.00056 28.6 4.2 32 58-91 51-85 (466)
72 PRK06148 hypothetical protein; 51.7 25 0.00054 31.8 4.4 33 58-91 624-656 (1013)
73 TIGR00713 hemL glutamate-1-sem 51.4 36 0.00077 26.8 4.8 31 58-88 48-79 (423)
74 PRK04013 argD acetylornithine/ 49.3 33 0.00071 27.2 4.4 46 27-89 8-56 (364)
75 PRK05630 adenosylmethionine--8 49.0 27 0.00058 28.1 3.8 31 58-90 40-73 (422)
76 PRK06777 4-aminobutyrate amino 48.8 27 0.00058 27.9 3.8 31 58-90 40-73 (421)
77 PRK09221 beta alanine--pyruvat 48.8 33 0.00072 27.8 4.4 33 58-92 49-84 (445)
78 PRK06058 4-aminobutyrate amino 48.4 28 0.00061 28.0 3.9 31 58-90 56-89 (443)
79 PRK09792 4-aminobutyrate trans 48.0 39 0.00085 27.0 4.6 31 58-90 40-73 (421)
80 PLN00144 acetylornithine trans 44.8 47 0.001 26.1 4.6 31 58-90 15-48 (382)
81 TIGR00700 GABAtrnsam 4-aminobu 44.1 46 0.001 26.4 4.5 31 58-90 33-66 (420)
82 PRK07495 4-aminobutyrate amino 43.6 36 0.00077 27.4 3.8 31 58-90 40-73 (425)
83 PRK13360 omega amino acid--pyr 43.4 38 0.00082 27.4 3.9 33 58-92 46-81 (442)
84 PRK06918 4-aminobutyrate amino 43.1 61 0.0013 26.1 5.1 31 58-90 54-87 (451)
85 PRK06916 adenosylmethionine--8 43.0 45 0.00098 27.1 4.3 32 58-91 56-90 (460)
86 PRK07678 aminotransferase; Val 42.5 37 0.0008 27.5 3.8 31 58-90 47-80 (451)
87 PRK06917 hypothetical protein; 42.0 46 0.00099 27.0 4.2 31 58-90 31-64 (447)
88 COG3077 RelB DNA-damage-induci 41.5 24 0.00052 23.1 2.0 29 63-92 1-29 (88)
89 PRK08742 adenosylmethionine--8 41.4 51 0.0011 27.1 4.4 33 58-92 64-99 (472)
90 cd06502 TA_like Low-specificit 40.7 14 0.0003 27.5 1.0 23 62-87 1-23 (338)
91 PRK07030 adenosylmethionine--8 40.4 60 0.0013 26.5 4.7 33 58-92 47-82 (466)
92 PRK07480 putative aminotransfe 39.7 47 0.001 27.0 4.0 31 58-90 50-83 (456)
93 TIGR02794 tolA_full TolA prote 38.5 1.7E+02 0.0037 23.3 6.9 61 12-90 263-323 (346)
94 PRK03158 histidinol-phosphate 38.4 38 0.00083 25.7 3.1 30 58-89 29-58 (359)
95 PRK07483 hypothetical protein; 38.0 40 0.00087 27.3 3.3 49 24-89 11-62 (443)
96 PRK06209 glutamate-1-semialdeh 37.9 46 0.001 26.7 3.6 30 58-89 48-80 (431)
97 PRK06943 adenosylmethionine--8 37.0 70 0.0015 26.0 4.6 33 58-92 54-89 (453)
98 PRK06938 diaminobutyrate--2-ox 36.8 80 0.0017 25.8 4.9 31 58-88 63-94 (464)
99 PRK04612 argD acetylornithine 36.6 79 0.0017 25.3 4.8 45 28-89 25-72 (408)
100 PRK07481 hypothetical protein; 36.6 54 0.0012 26.6 3.8 31 58-90 42-75 (449)
101 PF13103 TonB_2: TonB C termin 34.1 78 0.0017 19.0 3.5 62 13-89 4-65 (85)
102 PRK11522 putrescine--2-oxoglut 33.9 78 0.0017 25.9 4.4 33 58-92 82-117 (459)
103 PRK05965 hypothetical protein; 33.3 63 0.0014 26.3 3.8 31 58-90 46-79 (459)
104 PRK14390 hypothetical protein; 33.2 40 0.00088 20.7 2.0 17 74-91 20-36 (63)
105 TIGR01814 kynureninase kynuren 33.1 46 0.00099 26.0 2.8 36 58-96 26-61 (406)
106 COG2861 Uncharacterized protei 32.8 30 0.00066 26.7 1.7 28 63-91 123-152 (250)
107 PF01809 Haemolytic: Haemolyti 32.7 39 0.00085 20.8 1.9 18 74-92 27-44 (68)
108 PRK14382 hypothetical protein; 32.7 40 0.00086 20.9 2.0 17 74-91 27-43 (68)
109 PRK14384 hypothetical protein; 32.4 40 0.00087 20.3 1.9 17 74-91 7-23 (56)
110 cd01839 SGNH_arylesterase_like 32.0 63 0.0014 22.5 3.2 26 59-84 83-109 (208)
111 PRK00011 glyA serine hydroxyme 31.1 42 0.00092 26.2 2.3 36 58-98 25-62 (416)
112 TIGR00709 dat 2,4-diaminobutyr 30.8 1.3E+02 0.0028 24.3 5.1 44 28-88 24-70 (442)
113 PRK08360 4-aminobutyrate amino 30.3 1.3E+02 0.0028 24.4 5.1 32 58-91 41-75 (443)
114 PRK14373 hypothetical protein; 30.0 46 0.001 21.0 2.0 17 74-91 31-47 (73)
115 PRK06062 hypothetical protein; 29.9 1E+02 0.0023 25.0 4.5 31 58-90 53-86 (451)
116 PRK05769 4-aminobutyrate amino 29.8 1.3E+02 0.0028 24.3 5.0 34 58-91 54-88 (441)
117 PF13978 DUF4223: Protein of u 28.4 21 0.00045 21.4 0.2 11 63-76 30-40 (56)
118 PRK14383 hypothetical protein; 27.9 54 0.0012 21.2 2.0 18 74-92 31-48 (84)
119 PRK06931 diaminobutyrate--2-ox 27.6 1.3E+02 0.0028 24.5 4.7 29 58-88 58-89 (459)
120 PLN02938 phosphatidylserine de 27.6 55 0.0012 27.1 2.5 16 6-21 141-156 (428)
121 PRK14380 hypothetical protein; 27.5 51 0.0011 21.2 1.9 18 74-92 34-51 (81)
122 COG0386 BtuE Glutathione perox 27.0 19 0.00041 26.1 -0.2 20 1-21 38-57 (162)
123 PLN02482 glutamate-1-semialdeh 26.9 1.3E+02 0.0028 24.8 4.5 32 54-89 97-131 (474)
124 PRK14391 hypothetical protein; 26.9 54 0.0012 21.2 1.9 17 74-91 27-43 (84)
125 PRK14375 hypothetical protein; 26.7 55 0.0012 20.5 1.9 17 74-91 21-37 (70)
126 PRK05639 4-aminobutyrate amino 26.2 1.5E+02 0.0032 24.2 4.8 30 58-89 53-85 (457)
127 KOG3779|consensus 26.1 41 0.00089 28.8 1.5 72 3-89 621-692 (737)
128 COG1912 Uncharacterized conser 25.8 37 0.00081 26.5 1.2 40 48-94 221-260 (268)
129 PF00202 Aminotran_3: Aminotra 25.6 65 0.0014 25.0 2.5 35 58-92 16-51 (339)
130 PRK10721 hypothetical protein; 25.4 48 0.001 20.7 1.4 20 69-88 40-59 (66)
131 PF08199 E2: Bacteriophage E2- 24.7 67 0.0015 17.5 1.7 12 59-70 22-33 (37)
132 TIGR00163 PS_decarb phosphatid 24.7 37 0.00081 25.4 1.0 17 6-22 12-28 (238)
133 COG0001 HemL Glutamate-1-semia 24.5 1.4E+02 0.0031 24.8 4.4 39 53-94 50-89 (432)
134 PRK12389 glutamate-1-semialdeh 24.5 1.6E+02 0.0035 23.5 4.7 30 58-89 53-85 (428)
135 PRK00044 psd phosphatidylserin 24.4 53 0.0011 25.3 1.8 36 6-41 60-97 (288)
136 PRK03140 phosphatidylserine de 23.9 46 0.001 25.3 1.4 37 6-42 56-94 (259)
137 PF06461 DUF1086: Domain of Un 23.5 53 0.0012 23.4 1.5 23 68-93 38-60 (145)
138 PF04384 Fe-S_assembly: Iron-s 22.6 60 0.0013 20.1 1.4 20 69-88 38-57 (64)
139 PF10792 DUF2605: Protein of u 22.6 52 0.0011 22.0 1.2 14 3-16 13-26 (98)
140 cd01836 FeeA_FeeB_like SGNH_hy 22.5 1E+02 0.0022 21.0 2.8 29 59-88 71-99 (191)
141 PRK14388 hypothetical protein; 22.4 75 0.0016 20.5 1.9 17 74-91 27-43 (82)
142 TIGR03372 putres_am_tran putre 22.3 1.6E+02 0.0034 24.1 4.2 33 58-92 75-110 (442)
143 cd01831 Endoglucanase_E_like E 22.2 1.1E+02 0.0023 20.7 2.8 29 58-86 58-87 (169)
144 PRK14371 hypothetical protein; 21.8 79 0.0017 20.3 1.9 17 74-91 27-43 (81)
145 TIGR00278 conserved hypothetic 21.7 81 0.0018 19.9 1.9 17 74-91 23-39 (75)
146 PRK14385 hypothetical protein; 21.5 77 0.0017 21.1 1.9 17 74-91 36-52 (96)
147 PRK14387 hypothetical protein; 20.9 87 0.0019 20.3 2.0 17 74-91 30-46 (84)
148 PF12108 SF3a60_bindingd: Spli 20.9 71 0.0015 16.5 1.3 9 7-15 7-15 (28)
149 PF04015 DUF362: Domain of unk 20.8 1.2E+02 0.0025 21.6 2.9 22 70-92 17-38 (206)
150 cd01781 AF6_RA_repeat2 Ubiquit 20.5 97 0.0021 20.7 2.2 15 78-92 28-42 (100)
151 cd04502 SGNH_hydrolase_like_7 20.5 1.6E+02 0.0034 19.7 3.4 29 58-87 53-81 (171)
152 KOG2420|consensus 20.3 65 0.0014 26.3 1.6 33 6-38 133-167 (382)
153 COG0759 Uncharacterized conser 20.2 85 0.0018 20.7 1.9 17 74-91 32-48 (92)
154 TIGR03412 iscX_yfhJ FeS assemb 20.2 73 0.0016 19.7 1.4 19 70-88 38-56 (63)
No 1
>KOG1357|consensus
Probab=100.00 E-value=2.8e-36 Score=242.58 Aligned_cols=100 Identities=56% Similarity=1.044 Sum_probs=98.1
Q ss_pred CCCchhhhHHHHHHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHH
Q psy2211 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTE 80 (100)
Q Consensus 1 ~~~pl~~~f~~f~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~ 80 (100)
||+|||++||+||.|++|+||+|||+||++++||++|++++|.++|+||||++||+..+||||+|||||||+++...|.+
T Consensus 79 g~~ply~~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~ 158 (519)
T KOG1357|consen 79 GYAPLYSSFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAE 158 (519)
T ss_pred CccchhhhHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCCceEEeccceeeeeeecccccccccccCCcCCh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHhhCCCCCcCCCCC
Q psy2211 81 RSKESVKQSGCALCSPSGEI 100 (100)
Q Consensus 81 a~~~ai~~yG~gs~~srl~~ 100 (100)
++.+++++||.+.|+||.|+
T Consensus 159 ~~~~~~~kygl~~css~~e~ 178 (519)
T KOG1357|consen 159 ASLKSFDKYGLSRCSSRHEA 178 (519)
T ss_pred HHHHHHHHhcccccccchhc
Confidence 99999999999999999885
No 2
>PLN02483 serine palmitoyltransferase
Probab=100.00 E-value=2.8e-35 Score=237.84 Aligned_cols=99 Identities=41% Similarity=0.708 Sum_probs=95.3
Q ss_pred CCCchhhhHHHHHHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHH
Q psy2211 1 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTE 80 (100)
Q Consensus 1 ~~~pl~~~f~~f~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~ 80 (100)
||+||+++||+||+|++|+||+|||+|||+|+||++|++++|+++|+||+|+++|+.++||||+|||||||++++..+.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~ 122 (489)
T PLN02483 43 GYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTP 122 (489)
T ss_pred CCCccccCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCCCceEEecCCCceEEEeecCCccCcCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999986545999
Q ss_pred HHHHHHHhhCCCCCcCCCC
Q psy2211 81 RSKESVKQSGCALCSPSGE 99 (100)
Q Consensus 81 a~~~ai~~yG~gs~~srl~ 99 (100)
++++++++||+++|+||++
T Consensus 123 ~~~~ai~~~g~~~~~sr~~ 141 (489)
T PLN02483 123 RVIESLKKYSASTCSSRVD 141 (489)
T ss_pred HHHHHHHHhCCCCCccccc
Confidence 9999999999999999975
No 3
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.56 E-value=7.4e-15 Score=117.27 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhhhcccCCcc---cCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHH
Q psy2211 8 KFVLFYSRYVYRRIVDCFNRPV---TSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 84 (100)
Q Consensus 8 ~f~~f~~r~~~~r~~d~~~r~i---~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ 84 (100)
+|+.++.+.+..+-++.+.|.+ .+.++..+.+ +| ++++||||||||||++||+ +++++++
T Consensus 2 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~--------------~~--~~~~nf~SNdYLGLa~~~~-~~~a~~~ 64 (388)
T COG0156 2 DFLSFLRQALQALKAEGLYRGLRALDRRQGLAIRA--------------DG--RKVLNFCSNDYLGLASHPE-LIEAAKA 64 (388)
T ss_pred chHHHHHHHHHHHHhhccccchhhccccCCcceec--------------CC--ceeEeeeccCcccccCCHH-HHHHHHH
Confidence 4566777777666666665544 3344333332 24 8999999999999999997 9999999
Q ss_pred HHHhhCCCCCcCCC
Q psy2211 85 SVKQSGCALCSPSG 98 (100)
Q Consensus 85 ai~~yG~gs~~srl 98 (100)
++++||+|+||||+
T Consensus 65 ~~~~~g~g~~gsR~ 78 (388)
T COG0156 65 AIRRYGVGAGGSRL 78 (388)
T ss_pred HHHHhCCCCCCcCc
Confidence 99999999999996
No 4
>KOG1359|consensus
Probab=99.38 E-value=3.9e-13 Score=105.52 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=51.7
Q ss_pred CCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 26 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 26 ~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
.|.+++.++++|++. |..+++||||.||||||+.||+ +++++++++++||.|..|+|+
T Consensus 49 erVi~s~q~p~i~v~--------------G~~k~ilnFcaNnYLGLsshPe-ii~a~~~aleeyGaGlssvrf 106 (417)
T KOG1359|consen 49 ERVITSRQGPTIQVK--------------GSDKKILNFCANNYLGLSSHPE-IINAGQKALEEYGAGLSSVRF 106 (417)
T ss_pred eeEEeecccceEEEe--------------ccccceeeecccccccccCChH-HHHHHHHHHHHhCCCccceeE
Confidence 567788888888764 5669999999999999999998 999999999999999999885
No 5
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.36 E-value=5.8e-13 Score=108.82 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=41.7
Q ss_pred ecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 53 YTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 53 ~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
.+|+.|++|||+|||||||++||+ +++++++++++||+|+||||+
T Consensus 97 ~~~~~r~~l~FsSndYLGL~~~p~-v~~a~~~ai~~yG~g~~gSrl 141 (476)
T PLN02955 97 RKGRFKKLLLFSGNDYLGLSSHPT-ISNAAANAAKEYGMGPKGSAL 141 (476)
T ss_pred ccCCCceEEEeeccCccCCCCCHH-HHHHHHHHHHHcCCCCCCcCc
Confidence 345568999999999999999997 999999999999999999997
No 6
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.27 E-value=8.1e-12 Score=97.91 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHHHH---HhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHH
Q psy2211 10 VLFYSRYV---YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 86 (100)
Q Consensus 10 ~~f~~r~~---~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai 86 (100)
.+++..++ ..+...+..+++.+.+++.+.+.-. -.+.++++|||+|||||||++||+ |++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sn~ylgl~~~p~-v~~a~~~~~ 72 (406)
T PRK13393 4 EQYFQRQLDGLRREGRYRVFADLERQAGAFPRATHH----------GPDGPREVTVWCSNDYLGMGQHPA-VLAAMHEAL 72 (406)
T ss_pred HHHHHHHHHHHHHcCCCceeeeccccCCCcceeEEe----------ccCCCccEEEeecccccCCCCCHH-HHHHHHHHH
Confidence 34444444 4444445567777777755432100 001137999999999999999997 999999999
Q ss_pred HhhCCCCCcCCC
Q psy2211 87 KQSGCALCSPSG 98 (100)
Q Consensus 87 ~~yG~gs~~srl 98 (100)
++||+|+++||+
T Consensus 73 ~~~~~~~~~s~~ 84 (406)
T PRK13393 73 DTCGAGAGGTRN 84 (406)
T ss_pred HHcCCCCccccc
Confidence 999999999885
No 7
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.26 E-value=1.1e-11 Score=96.81 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=38.2
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
++++||+|||||||+.||+ +++|+++++++||.|+++||+
T Consensus 45 ~~~~~~~sn~ylgl~~~p~-v~~a~~~~~~~~~~~~~~s~~ 84 (402)
T TIGR01821 45 KDVTVWCSNDYLGMGQHPE-VLQAMHETLDKYGAGAGGTRN 84 (402)
T ss_pred eeEEEeEccCcCCCCCCHH-HHHHHHHHHHHcCCCCcchhh
Confidence 8899999999999999997 999999999999999998875
No 8
>KOG1358|consensus
Probab=99.21 E-value=9.8e-12 Score=99.97 Aligned_cols=40 Identities=35% Similarity=0.605 Sum_probs=38.7
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
++|+||+|+|||||..+++ +++.|..+|++||+|+||+|.
T Consensus 94 ~~~~N~aS~NfL~l~~~~~-ike~a~~~lrkyGvGsCGPrG 133 (467)
T KOG1358|consen 94 KDVLNFASANFLGLIENEE-IKEEASFTLRKYGVGSCGPRG 133 (467)
T ss_pred ceeecccchhhhhhcccHH-HHHHHHHHHHHhCCCCcCCCc
Confidence 8999999999999999997 999999999999999999984
No 9
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.19 E-value=4.7e-11 Score=93.21 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=39.0
Q ss_pred CcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 56 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 56 ~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
+++++|||+|||||||+.||+ +++++.+++++||.|++|||+
T Consensus 44 ~~~~~~~~~s~dylgl~~~p~-v~~a~~~~~~~~~~~~~~s~~ 85 (407)
T PRK09064 44 GEREVTVWCSNDYLGMGQHPK-VIEAMIEALDRCGAGAGGTRN 85 (407)
T ss_pred CCceEEEEECCCCcCCCCCHH-HHHHHHHHHHHcCCCCCCcCc
Confidence 348999999999999999997 999999999999999998875
No 10
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.15 E-value=1.9e-11 Score=96.37 Aligned_cols=37 Identities=30% Similarity=0.628 Sum_probs=35.7
Q ss_pred EEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 61 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 61 lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
|||+|||||||++||+ +++++++++++||+|+||||.
T Consensus 1 ~~f~s~dyLgl~~~~~-~~~~~~~a~~~~g~~~~~sr~ 37 (392)
T PLN03227 1 LNFATHDFLSTSSSPT-LRQTALESLSHYGCGSCGPRG 37 (392)
T ss_pred CCCcCcCccCCCCCHH-HHHHHHHHHHHhCCCCccccc
Confidence 6999999999999997 999999999999999999996
No 11
>PRK07505 hypothetical protein; Provisional
Probab=99.03 E-value=5.7e-10 Score=87.39 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceee-ecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhh
Q psy2211 11 LFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFK-YTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 11 ~f~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~-~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~y 89 (100)
-+++|+.|.|.++||.+|+++.|...+. .|.. +..++ ..| +++|||+|++||||..||+ |++|+.+.+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---G~~~~d~~g--~~~ld~~s~~~lgl~~~p~-v~~A~~~~l~~~ 76 (402)
T PRK07505 5 YRNNKKRINRAEKFWDAAYDEGLNGLTV--GERE---GILITLADG--HTFVNFVSCSYLGLDTHPA-IIEGAVDALKRT 76 (402)
T ss_pred hHHHHHHHHhhHHHHHHHHhccccccee--eccC---CccEEecCC--ceEEEeecCCccCCCCCHH-HHHHHHHHHHHh
Confidence 3567889999999999999998877432 2222 22222 345 8999999999999999997 999999999999
Q ss_pred C-CCCCcCC
Q psy2211 90 G-CALCSPS 97 (100)
Q Consensus 90 G-~gs~~sr 97 (100)
| .++++++
T Consensus 77 g~~~~~~~~ 85 (402)
T PRK07505 77 GSLHLSSSR 85 (402)
T ss_pred CCCCCCccc
Confidence 8 6766664
No 12
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.99 E-value=1.7e-09 Score=83.54 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=56.3
Q ss_pred HHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCc
Q psy2211 16 YVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCS 95 (100)
Q Consensus 16 ~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~ 95 (100)
.+......+..+++.+.+|+.+.+.+ | +++|||+|||||||+.+|+ +++++.+++++||.|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g--~~~i~~~~~~~lg~~~~~~-v~~~~~~~~~~~~~~~~~ 74 (393)
T TIGR01822 11 SIREAGLFKSERIITSPQGADIRVAD-------------G--REVLNFCANNYLGLSSHPD-LIQAAKDALDEHGFGMSS 74 (393)
T ss_pred HHHHcCCCCcccccccCCCceEEecC-------------C--ceEEEeeCCCccccCCCHH-HHHHHHHHHHHhCCCCCC
Confidence 34556666778888999998877532 4 8999999999999999997 999999999999999888
Q ss_pred CC
Q psy2211 96 PS 97 (100)
Q Consensus 96 sr 97 (100)
||
T Consensus 75 s~ 76 (393)
T TIGR01822 75 VR 76 (393)
T ss_pred cC
Confidence 88
No 13
>PLN02822 serine palmitoyltransferase
Probab=98.96 E-value=1e-09 Score=89.03 Aligned_cols=45 Identities=31% Similarity=0.527 Sum_probs=41.1
Q ss_pred eeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 51 FKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 51 ~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
+++.| +++|||+|+|||||..||+ +++++++++++||+|+||||.
T Consensus 104 i~~~G--~~~id~~s~~~lgl~~~~~-i~ea~~~al~~~G~g~~g~r~ 148 (481)
T PLN02822 104 TIING--KDVVNFASANYLGLIGNEK-IKESCTSALEKYGVGSCGPRG 148 (481)
T ss_pred EEECC--ceEEEeECCCcCCCCCCHH-HHHHHHHHHHHhCCCCcccCc
Confidence 33456 8999999999999999997 999999999999999999986
No 14
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.93 E-value=3.3e-09 Score=83.18 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcC
Q psy2211 17 VYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 96 (100)
Q Consensus 17 ~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~s 96 (100)
+..+...+..+++.+.+++.+.+.- . ..+++++++||+|||||||+.+|. +++++.+++++||+|+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~sn~yl~l~~~p~-v~~a~~~~~~~~~~~~~~s 83 (410)
T PRK13392 15 LHQEGRYRVFADLEREAGRFPRARD-H---------GPDGPRRVTIWCSNDYLGMGQHPD-VIGAMVDALDRYGAGAGGT 83 (410)
T ss_pred HHHcCCCccccccccccCccceeee-c---------ccCCCceEEEEECCCccCCCCCHH-HHHHHHHHHHHcCCCCchh
Confidence 3445555566677776665443210 0 001237899999999999999997 9999999999999999998
Q ss_pred CC
Q psy2211 97 SG 98 (100)
Q Consensus 97 rl 98 (100)
|.
T Consensus 84 ~~ 85 (410)
T PRK13392 84 RN 85 (410)
T ss_pred hh
Confidence 75
No 15
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.92 E-value=1.2e-09 Score=84.88 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=37.7
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhh-------CCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQS-------GCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~y-------G~gs~~srl 98 (100)
.++|||+||||||++.+|. +++++.+++++| |+|++|||+
T Consensus 4 ~~~~~~~s~~YL~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~gs~~ 50 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDT-LVHEVEKRYRLYCRQFPHAQLGYGGSRA 50 (370)
T ss_pred CceEEeECCCccCCCCCHH-HHHHHHHHHHHhccccCCCCCCCCCcCc
Confidence 6799999999999999997 999999999999 799999984
No 16
>KOG1360|consensus
Probab=98.89 E-value=2.4e-09 Score=87.01 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=38.3
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
+++--||||||||++.||+ |.+|+.++|++||.|+||+|.
T Consensus 171 k~VtVWCSNDYLgms~Hp~-V~~A~~~tl~~hG~GAGGTRN 210 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPE-VLDAMHDTLDRHGAGAGGTRN 210 (570)
T ss_pred CceEEEecCccccccCChH-HHHHHHHHHHHcCCCcCCccc
Confidence 7899999999999999997 999999999999999999984
No 17
>PRK07179 hypothetical protein; Provisional
Probab=98.78 E-value=2.5e-08 Score=78.11 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=36.7
Q ss_pred CcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCC
Q psy2211 56 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPS 97 (100)
Q Consensus 56 ~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~sr 97 (100)
+++.+++|+|||||||++||+ +++++.+++++||.++++|+
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~-v~~a~~~~~~~~~~~~~~s~ 92 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPD-IIKAQIAALQEEGDSLVMSA 92 (407)
T ss_pred CCCcEEEeecCCccCCCCCHH-HHHHHHHHHHHhCCCCCccc
Confidence 448999999999999999997 99999999999998876554
No 18
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.38 E-value=3.3e-07 Score=69.15 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.1
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALC 94 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~ 94 (100)
+++||||||||||+++||+ ++++.++++++|+.+-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-v~~a~~~~~~~~~~~~~ 36 (349)
T cd06454 1 KKVLNFCSNDYLGLANHPE-VIEAAKEALDKYGVGAG 36 (349)
T ss_pred CCceecccCCccccCCCHH-HHHHHHHHHHHhCCCCC
Confidence 4789999999999999997 99999999999886533
No 19
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.26 E-value=1.9e-06 Score=65.05 Aligned_cols=53 Identities=25% Similarity=0.489 Sum_probs=45.9
Q ss_pred CcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcC
Q psy2211 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 96 (100)
Q Consensus 27 r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~s 96 (100)
||+.+.+|+++... | +++|+|+|||+||+..+|+ +++++.+++++||.+.+++
T Consensus 1 ~~~~~~~~~~~~~~--------------g--~~~id~~~~~~~g~~~~~~-v~~a~~~~~~~~~~~~~~~ 53 (360)
T TIGR00858 1 RPLDRGPGPEVVRD--------------G--RRLLNFSSNDYLGLASHPE-VIQAAQQGAEQYGAGSTAS 53 (360)
T ss_pred CCcccCCCCeEEEC--------------C--ceEEecccCCcccCCCCHH-HHHHHHHHHHhcCCCCCCc
Confidence 68889999998742 4 8999999999999999997 9999999999998875544
No 20
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.72 E-value=8.3e-05 Score=56.81 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=46.8
Q ss_pred cCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcCC
Q psy2211 25 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPS 97 (100)
Q Consensus 25 ~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~sr 97 (100)
-.+++.++.|.++.. + | +++|+|++|+++|+..+|+ +++++.+++++||.+.++++
T Consensus 22 ~~~~~~~~~g~~~~~-~-------------g--~~~id~~~~~~~g~~~~~~-v~~a~~~~~~~~~~~~~~~~ 77 (385)
T PRK05958 22 SLRPREGGAGRWLVV-D-------------G--RRMLNFASNDYLGLARHPR-LIAAAQQAARRYGAGSGGSR 77 (385)
T ss_pred cccccccCCCceeEe-C-------------C--ceEEEeeCCCcccCCCCHH-HHHHHHHHHHhcCCCCCCcC
Confidence 356677888888884 3 5 9999999999999999997 99999999999987766544
No 21
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=97.62 E-value=0.00017 Score=55.54 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=48.0
Q ss_pred HhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCC
Q psy2211 18 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALC 94 (100)
Q Consensus 18 ~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~ 94 (100)
+++....+.+.+..+.|.+|. .+ | +++|||+++||||+..+|. +++++.+++++++...+
T Consensus 9 ~~~~~~~~~~~~~~~~g~~~~-~~-------------g--~~~id~~~~~~~g~~~~~~-~~~a~~~~~~~~~~~~~ 68 (385)
T TIGR01825 9 KENGLYISIRVLESAQGPRVR-VN-------------G--KEVINLSSNNYLGFADHPR-LKEAAAQAIQQYGVGAG 68 (385)
T ss_pred HHcCCcccccccccCCCceEE-EC-------------C--ceEEEeeccCccCCCCCHH-HHHHHHHHHHHcCCCCC
Confidence 444444455667888998888 43 4 8999999999999999997 99999999999976543
No 22
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=97.61 E-value=3.9e-05 Score=59.99 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=23.1
Q ss_pred ccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 66 YNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 66 nnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
||||||++||. +++++.+++++||
T Consensus 27 ~~ylgl~~~~~-~~~~~~~~~~~~~ 50 (346)
T TIGR03576 27 YDLTGLAGGFK-IDEEDLELLETYV 50 (346)
T ss_pred cccccCCCChh-HHHHHHHHHHHhc
Confidence 89999999997 9999999999996
No 23
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.56 E-value=0.00044 Score=53.13 Aligned_cols=52 Identities=31% Similarity=0.523 Sum_probs=41.5
Q ss_pred ccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcC
Q psy2211 29 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 96 (100)
Q Consensus 29 i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~s 96 (100)
+....|.+++..+ | +.+|||++++|||+..+|. +++++.+++++++.+.+++
T Consensus 28 ~~~~~~~~~~~~~-------------g--~~~i~l~~~~~~~~~~~~~-i~~a~~~~~~~~~~~~~~~ 79 (397)
T PRK06939 28 ITSPQGADITVAD-------------G--KEVINFCANNYLGLANHPE-LIAAAKAALDSHGFGMASV 79 (397)
T ss_pred ccCCCCceEEecC-------------C--CeEEEeeccCccccCCCHH-HHHHHHHHHHHcCCCCccc
Confidence 4556666666432 4 8999999999999999997 9999999999987765443
No 24
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=97.04 E-value=0.00093 Score=51.32 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=39.2
Q ss_pred ccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEecc---ccccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 24 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 24 ~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
++...+.++.|.++... +| +++|||+| |||||+ .+|. +++++.+++++++.
T Consensus 8 ~~~~~~~~~~g~~~~~~-------------~g--~~~id~~~~~~~~~lG~-~~p~-v~~a~~~~~~~~~~ 61 (379)
T TIGR00707 8 RLPVKIVRGKGAYVYDV-------------NG--KEYLDFVAGIAVNSLGH-AHPK-LVEALKEQLEKLVH 61 (379)
T ss_pred CCCccEEEeecCEEEeC-------------CC--CEEEEcCcchhhccCCC-CCHH-HHHHHHHHHhhccc
Confidence 34445566667766533 25 89999999 899998 6786 99999999998864
No 25
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=96.77 E-value=0.0028 Score=49.92 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=27.5
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~y 89 (100)
+++|+|+| |+|||.+ ||+ |++|+++.+++.
T Consensus 35 ~~ylD~~~g~~~~~lGh~-~p~-v~~a~~~~~~~~ 67 (397)
T TIGR03246 35 KEYIDFAGGIAVNALGHA-HPE-LVKALIEQADKL 67 (397)
T ss_pred CEEEECCcCHhhccCCCC-CHH-HHHHHHHHHHhc
Confidence 89999999 8999995 897 999999999983
No 26
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=96.60 E-value=0.003 Score=48.84 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=37.8
Q ss_pred CCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEecccc---ccCCCCCChHHHHHHHHHHHhhC
Q psy2211 26 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYN---YLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 26 ~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Snn---YLGla~~~~~v~~a~~~ai~~yG 90 (100)
..++....|.++.-. .| +++|+|+||+ |||. .||+ |++|+.+++++++
T Consensus 12 ~~~~~~~~G~~~~d~-------------~G--~~~lD~~s~~~~~~lG~-~~p~-v~~a~~~~~~~~~ 62 (377)
T PRK02936 12 PIDIVKGKGTKVTDN-------------NG--KTYLDFTSGIAVCNLGH-CHPT-VTKAVQEQLDDIW 62 (377)
T ss_pred CceEEEeecCEEEeC-------------CC--CEEEECCcchhhccCCC-CCHH-HHHHHHHHHHhcc
Confidence 345566777776533 25 8999999999 9997 8886 9999999999863
No 27
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=96.49 E-value=0.0015 Score=52.10 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=31.9
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHH-HHhhCCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKES-VKQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~a-i~~yG~gs~~srl 98 (100)
+.+-+++||||| ||. +++++..+ +.+||.|++|||+
T Consensus 29 ~~~~l~~sen~~----~p~-v~~a~~~~~~~~~~~g~~gsr~ 65 (416)
T PRK13034 29 DHLELIASENFT----SPA-VMEAQGSVLTNKYAEGYPGKRY 65 (416)
T ss_pred cCeeecccccCC----CHH-HHHHhcchhhcCCCCCCCCCcc
Confidence 456678999998 887 99999999 5999999999997
No 28
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=96.43 E-value=0.0072 Score=47.42 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=37.9
Q ss_pred cccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCC---CChHHHHHHHHHHHhhCCCC
Q psy2211 28 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGE---NTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 28 ~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~---~~~~v~~a~~~ai~~yG~gs 93 (100)
++.+..|.++... +| +++|+|+| +|++++. ||+ |++|+++.+++++.++
T Consensus 22 ~~~~~~g~~~~~~-------------~g--~~~lD~~s-~~~~~~~Gh~~p~-v~~a~~~~~~~~~~~~ 73 (401)
T TIGR01885 22 VFSKAEGVHVWDV-------------EG--KRYLDFLS-AYSAVNQGHCHPK-IVKALTEQAQKLTLSS 73 (401)
T ss_pred eEEeeecCEEEeC-------------CC--CEEEEccc-CHhhccCCCCCHH-HHHHHHHHHHhccccc
Confidence 3455666666533 25 89999999 5999985 886 9999999999987654
No 29
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=96.41 E-value=0.0065 Score=48.04 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=36.8
Q ss_pred CcccCCCCCeEEEeecccCCCCceeeecCCcccEEEecc---ccccCCCCCChHHHHHHHHHHHhh
Q psy2211 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 27 r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~y 89 (100)
..+.+..|.++.-.+ | +++|+|.| ++|||.+ ||+ |++|+.+.++++
T Consensus 23 ~~~~~~~G~~~~d~d-------------G--~~~lD~~~g~~~~~lGh~-~p~-v~~A~~~~~~~~ 71 (406)
T PRK12381 23 FIPVRGEGSRLWDQQ-------------G--KEYIDFAGGIAVNALGHA-HPA-LREALNEQASKF 71 (406)
T ss_pred ceEEEeecCEEEeCC-------------C--CEEEEcCcCHhhccCCCC-CHH-HHHHHHHHHhhc
Confidence 345666677666432 5 89999999 8999999 896 999999999885
No 30
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=96.25 E-value=0.011 Score=46.05 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=41.8
Q ss_pred cccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCC---CChHHHHHHHHHHHhhCCCCCcC
Q psy2211 23 DCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGE---NTGLCTERSKESVKQSGCALCSP 96 (100)
Q Consensus 23 d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~---~~~~v~~a~~~ai~~yG~gs~~s 96 (100)
..+..++....|.++...+ | +++|+|.| +|++++. ||+ +++++++.+++++.++...
T Consensus 21 ~~~~~~~~~~~G~~~~d~~-------------g--~~~lD~~~-~~~~~~~Gh~~~~-i~~a~~~~~~~~~~~~~~~ 80 (401)
T PRK00854 21 KPLDVVLTRGEGVWVWDTD-------------G--NRYLDCLS-AYSAVNQGHCHPK-ILAAMVEQAGRLTLTSRAF 80 (401)
T ss_pred CCCCceEEeeeeCEEEECC-------------C--CEEEEcCc-chhhccCCCCCHH-HHHHHHHHHhhcccccccc
Confidence 3444455666777776432 5 89999766 5998886 886 9999999999998766443
No 31
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=95.95 E-value=0.011 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.9
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhCCCC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG~gs 93 (100)
+++|+|+| +++||. .||+ +.+++.++++++|..+
T Consensus 43 ~~~lD~~s~~~~~~lG~-~~p~-v~~ai~~~~~~~~~~~ 79 (398)
T PRK03244 43 KEYLDLLGGIAVNALGH-AHPA-VVEAVTRQLATLGHVS 79 (398)
T ss_pred CEEEECCcCHhhccCCC-CCHH-HHHHHHHHHHhccCcc
Confidence 89999999 899998 5886 9999999999987543
No 32
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=95.91 E-value=0.015 Score=45.79 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=37.0
Q ss_pred cCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 25 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 25 ~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+.-.+....|.++... +| +++|+|+|+ +|||. +||+ |.+++.+.+++++
T Consensus 22 ~~~~~~~~~G~~~~d~-------------dG--~~~iD~~~~~~~~~lGh-~~p~-v~~a~~~~~~~~~ 73 (403)
T PRK05093 22 AEFIPVRGEGSRVWDQ-------------QG--KEYIDFAGGIAVTALGH-CHPA-LVKALKEQGEKLW 73 (403)
T ss_pred CCeeEEEeecCEEEeC-------------CC--CEEEEcCcCHHhccCCC-CCHH-HHHHHHHHHHhcC
Confidence 3334455666666533 25 899999995 99999 8897 9999999998853
No 33
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=95.87 E-value=0.012 Score=45.61 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=26.3
Q ss_pred ccEEEecc-ccccCCC-CCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLAS-YNYLGFG-ENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~S-nnYLGla-~~~~~v~~a~~~ai~~y 89 (100)
+++|+|+| |+|++|+ .||+ |++++.+++++.
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~-v~~a~~~~~~~~ 68 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPE-VVEALKEQLAKL 68 (413)
T ss_pred CEEEEcCccHHhhccCCCCHH-HHHHHHHHHHhC
Confidence 89999999 6788888 6675 999999999754
No 34
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=95.64 E-value=0.02 Score=44.45 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=29.7
Q ss_pred ccEEEeccc-cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASY-NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~Sn-nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|+ .|++|+.||+ +++|+.+++++++.
T Consensus 29 ~~~lD~~s~~~~~~lG~~p~-v~~a~~~~~~~~~~ 62 (375)
T PRK04260 29 KKYLDFSSGIGVTNLGFHPQ-VQQALQKQAGLIWH 62 (375)
T ss_pred CEEEECCCCcccccCCCCHH-HHHHHHHHHHhcCc
Confidence 899999998 6999999997 99999999998754
No 35
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=95.60 E-value=0.024 Score=45.04 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.9
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|+| |+|||.+ ||+ |.+|+++.+++...+
T Consensus 36 ~~~lD~~sg~~~~~lGh~-~p~-v~~a~~~q~~~~~~~ 71 (395)
T PRK03715 36 KRYLDFIQGWAVNCLGHC-NPG-MVEALAAQAEKLINP 71 (395)
T ss_pred CEEEECCcChhhccCCCC-CHH-HHHHHHHHHHhcccc
Confidence 99999997 9999999 586 999999999876544
No 36
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=95.58 E-value=0.02 Score=44.59 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=34.9
Q ss_pred cccCCCCCeEEEeecccCCCCceeeecCCcccEEEecc---ccccCCCCCChHHHHHHHHHHHh
Q psy2211 28 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 28 ~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~ 88 (100)
.+....|.++... +| +++|+|.| ++|||. +||+ +.+|+.+.+++
T Consensus 16 ~~~~~~G~~~~d~-------------dG--~~~lD~~~g~~~~~lGh-~~p~-v~~a~~~~~~~ 62 (389)
T PRK01278 16 AFERGEGVWLIDE-------------DG--ERYLDFASGIAVNSLGH-AHPH-LVEALKEQAEK 62 (389)
T ss_pred eEEeeecCEEEEC-------------CC--CEEEECCccHhhccCCC-CCHH-HHHHHHHHHHh
Confidence 3456666666432 25 89999999 799999 7886 99999999987
No 37
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=95.52 E-value=0.02 Score=44.49 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=39.9
Q ss_pred cCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCC---CCChHHHHHHHHHHHhhCCCCC
Q psy2211 25 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG---ENTGLCTERSKESVKQSGCALC 94 (100)
Q Consensus 25 ~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla---~~~~~v~~a~~~ai~~yG~gs~ 94 (100)
+..++....|.++... .| +++|+|+| +|+++. .||+ |+++..+.+++++.++.
T Consensus 13 ~~~~~~~~~G~~~~d~-------------dg--~~~lD~~~-~~~~~~~Gh~~p~-v~~a~~~~~~~~~~~~~ 68 (400)
T PTZ00125 13 LPVVLKRGKGVFVWDV-------------EG--KKYYDFLS-AYSAVNQGHCHPK-ILAALINQAQKLTLTSR 68 (400)
T ss_pred CCccEEeeecCEEEeC-------------CC--CEEEEccc-CHhhccCCcCCHH-HHHHHHHHHHhcccccc
Confidence 3445566667776643 25 89999999 699887 6786 99999999999876543
No 38
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=94.74 E-value=0.042 Score=45.36 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=29.8
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.| +++|| -.||+ |++|+.+.+++++..
T Consensus 89 ~~ylD~~sg~~~~~lG-h~hp~-v~~Av~~ql~~~~~~ 124 (504)
T PLN02760 89 KKYLDALAGLWCTALG-GSEPR-LVAAATEQLNKLPFY 124 (504)
T ss_pred CEEEEcCcCHHhcccC-CCCHH-HHHHHHHHHhhccce
Confidence 99999999 89999 78897 999999999997654
No 39
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=94.36 E-value=0.058 Score=43.88 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.3
Q ss_pred ccEEEeccccccCCC-CCChHHHHHHHHHHHhhCCCC
Q psy2211 58 STCLNLASYNYLGFG-ENTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 58 ~~~lnf~SnnYLGla-~~~~~v~~a~~~ai~~yG~gs 93 (100)
+++|+|+++.++.|+ .||+ |++|+.+.+++++.++
T Consensus 72 ~~ylD~~g~~~~~lGh~~p~-v~~Ai~~ql~~~~~~~ 107 (459)
T PRK06082 72 KKYMDFHGNNVHQLGYGHPH-VIEKVKEQMAKLPFSP 107 (459)
T ss_pred CEEEEcccHhhcccCCCCHH-HHHHHHHHHHhCCCcc
Confidence 899999999997777 5665 9999999999977643
No 40
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=93.79 E-value=0.097 Score=41.78 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=29.5
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCCCCc
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCALCS 95 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~gs~~ 95 (100)
+++|+|.|+ +.|| -.||+ |.+|+++.+++++.++.+
T Consensus 43 ~~ylD~~~g~~~~~lG-h~~p~-v~~a~~~q~~~~~~~~~~ 81 (433)
T PRK08117 43 KEYLDFTSGIAVANVG-HRHPK-VVQAIKEQADKLMHGPSG 81 (433)
T ss_pred CEEEECCcchhhccCC-CCCHH-HHHHHHHHHHhccCcccc
Confidence 899999885 6678 56776 999999999998777644
No 41
>PLN02624 ornithine-delta-aminotransferase
Probab=93.45 E-value=0.12 Score=42.21 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=29.3
Q ss_pred ccEEEeccccccCCCC---CChHHHHHHHHHHHhhCCCC
Q psy2211 58 STCLNLASYNYLGFGE---NTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~---~~~~v~~a~~~ai~~yG~gs 93 (100)
+++|+|.| +|+++.. ||+ |++|+++.+++++.++
T Consensus 75 ~~ylD~~s-g~~~~~~Gh~~p~-v~~ai~~ql~~~~~~~ 111 (474)
T PLN02624 75 KKYLDFLS-AYSAVNQGHCHPK-IIKALTEQAEKLTLSS 111 (474)
T ss_pred CEEEEccc-chhcccCCCCCHH-HHHHHHHHHHhcCCcc
Confidence 89999998 5887766 786 9999999999987665
No 42
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=93.20 E-value=0.12 Score=41.46 Aligned_cols=33 Identities=6% Similarity=0.015 Sum_probs=28.7
Q ss_pred ccEEEecccc---ccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASYN---YLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Snn---YLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|+|+. +|| -.||+ +++++++.+++++..
T Consensus 45 ~~ylD~~~g~~~~~lG-h~~p~-v~~ai~~~~~~~~~~ 80 (427)
T TIGR00508 45 RRLIDGMSSWWAAIHG-YNHPR-LNAAAQKQIDKMSHV 80 (427)
T ss_pred CEEEEccchHHHhcCC-CCCHH-HHHHHHHHHHhcCCc
Confidence 8999999987 999 66786 999999999997743
No 43
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=93.05 E-value=0.19 Score=40.15 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=28.8
Q ss_pred cCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 54 TGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 54 ~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+| +++|+|+|+ .+||. .||. +++++.+.+++ +.+
T Consensus 48 dG--~~~lD~~~g~~~~~lGh-~~p~-i~~a~~~~~~~-~~~ 84 (426)
T PRK00062 48 DG--NEYIDYVGSWGPMILGH-AHPE-VVEAVIEAAEK-GLS 84 (426)
T ss_pred CC--CEEEEcccchhhhhcCC-CCHH-HHHHHHHHHHh-CCc
Confidence 46 899999996 79999 7786 99999999998 554
No 44
>PRK12403 putative aminotransferase; Provisional
Probab=90.26 E-value=0.35 Score=39.29 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=26.4
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~gs 93 (100)
+++|+|.|. .-||. .||+ |++|+++.+++++.++
T Consensus 54 ~~ylD~~~g~~~~~lGh-~hp~-v~~A~~~q~~~~~~~~ 90 (460)
T PRK12403 54 KRYLDGMSGLWCTNLGY-GRKD-LAAAAARQMEQLPYYN 90 (460)
T ss_pred CEEEECchhHHhhcCCC-CCHH-HHHHHHHHHHhCCCee
Confidence 899996442 12999 5686 9999999999987653
No 45
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=90.24 E-value=0.5 Score=36.51 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=27.0
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|+| +++||. .+|. +.+++.+++++..
T Consensus 39 ~~~iD~~~g~~~~~lG~-~~p~-v~~a~~~~~~~~~ 72 (396)
T PRK02627 39 KEYLDFLAGIAVNNLGH-CHPK-LVEAIQEQAAKLI 72 (396)
T ss_pred CEEEECCccHHhccCCC-CCHH-HHHHHHHHHhhcc
Confidence 89999999 899999 5686 9999999998753
No 46
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=86.91 E-value=0.36 Score=37.51 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 76 GLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 76 ~~v~~a~~~ai~~yG~gs~~srl 98 (100)
..+++++++++++||+|+++||+
T Consensus 18 g~~~~~~~~a~~~~~~~~~~~~~ 40 (370)
T TIGR02539 18 GVLTEAARKALVEFGDGYSVCDF 40 (370)
T ss_pred CCCcHHHHHHHHHHhhccccccc
Confidence 34899999999999999998876
No 47
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=84.05 E-value=1.3 Score=33.62 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=21.1
Q ss_pred cEEEeccccccCCCCCChHHHHHHHHHHH
Q psy2211 59 TCLNLASYNYLGFGENTGLCTERSKESVK 87 (100)
Q Consensus 59 ~~lnf~SnnYLGla~~~~~v~~a~~~ai~ 87 (100)
++|||++|+|+++++++. +.++..++.+
T Consensus 2 ~~I~l~~~~~~~~~~~~~-~~~~~~~~~~ 29 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPP-PPAAIKAAIR 29 (363)
T ss_dssp TEEESSSSSTSSTTSSHH-HHHHHHHHHH
T ss_pred CEEEEECCCCCCcccccc-hHHHHHHHHH
Confidence 689999999999999964 5555444443
No 48
>PRK06149 hypothetical protein; Provisional
Probab=80.58 E-value=2.2 Score=38.01 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=26.0
Q ss_pred ccEEEeccccccCCC-CCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASYNYLGFG-ENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~SnnYLGla-~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.+ +|..|+ .||+ |.+|+++.+.+...
T Consensus 585 ~~ylD~~~-~~~~lGh~hp~-v~~Ai~~q~~~l~~ 617 (972)
T PRK06149 585 RSYLDMVN-NVTVLGHGHPR-LAAAAARQWSLLNT 617 (972)
T ss_pred CEEEECCC-CccccCCCCHH-HHHHHHHHHHhccc
Confidence 99999995 588899 5665 99999998887543
No 49
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=79.96 E-value=5.6 Score=31.15 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=25.3
Q ss_pred ccEEEeccccc---cCCCCCChHHHHHHHHHHHhhCCCC
Q psy2211 58 STCLNLASYNY---LGFGENTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 58 ~~~lnf~SnnY---LGla~~~~~v~~a~~~ai~~yG~gs 93 (100)
+++|+|.|.-. ||-+ ||+ |.+|+++.+++++.++
T Consensus 40 ~~~lD~~~g~~~~~lGh~-~p~-v~~ai~~~~~~~~~~~ 76 (396)
T PRK04073 40 NRYMDMLSAYSAVNQGHR-HPK-IIQALKDQADKVTLTS 76 (396)
T ss_pred CEEEEcCCCHHhccCCCC-CHH-HHHHHHHHHhhccccc
Confidence 89999976522 4432 554 9999999999988764
No 50
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=78.76 E-value=0.97 Score=34.72 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHhhCCCCCcCCC
Q psy2211 74 NTGLCTERSKESVKQSGCALCSPSG 98 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~gs~~srl 98 (100)
.++.+++++++++.+||.|+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDF 33 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccc
Confidence 3345899999999999999888764
No 51
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=75.69 E-value=2.4 Score=34.83 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=29.9
Q ss_pred ccEEEe-ccccccCCCCCChHHHHHHHHHH-HhhCCCCCcCCC
Q psy2211 58 STCLNL-ASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf-~SnnYLGla~~~~~v~~a~~~ai-~~yG~gs~~srl 98 (100)
+..||| +|-||+ ++. +++++..++ .+||.|++|+|+
T Consensus 34 ~~~l~liasen~~----s~~-v~~a~~s~~~~ky~~G~~g~r~ 71 (475)
T PLN03226 34 WKGLELIASENFT----SRA-VMEALGSCLTNKYSEGLPGARY 71 (475)
T ss_pred HcCeeEecCCccC----CHH-HHHHHhhHHhccccCCCCCCcC
Confidence 355666 899995 565 999999999 999999999986
No 52
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=70.32 E-value=18 Score=32.12 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=49.0
Q ss_pred chhhhHHHHHHHH------HHhhhhcccCCcccCCCC---CeEEEeecccCCCCceeeecCCcc----cEEEeccc-ccc
Q psy2211 4 DLYEKFVLFYSRY------VYRRIVDCFNRPVTSVPG---AIITIKDRETPDYGWTFKYTGTES----TCLNLASY-NYL 69 (100)
Q Consensus 4 pl~~~f~~f~~r~------~~~r~~d~~~r~i~~~~g---~~i~~~~r~~~~~~~~~~~~G~~~----~~lnf~Sn-nYL 69 (100)
.|+..+++.+.++ |.+|.+.....|.+.... ..+.++++..++.-..+..+.+++ ++|++.|. ...
T Consensus 298 ~~~~~~~~~~~~r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~ 377 (817)
T PLN02974 298 ALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQ 377 (817)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHh
Confidence 3455555555555 355555554445433221 123444444443222222333345 89998763 445
Q ss_pred CCC--CCChHHHHHHHHHHHhhCCC
Q psy2211 70 GFG--ENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 70 Gla--~~~~~v~~a~~~ai~~yG~g 92 (100)
+++ .||+ +++|+.+.+++++--
T Consensus 378 ~lG~h~~p~-I~~Ai~~Qa~rl~hv 401 (817)
T PLN02974 378 GPDPTLQPE-LARAVAYAAGRYGHV 401 (817)
T ss_pred CCCcCCCHH-HHHHHHHHHhhCCcc
Confidence 565 4887 999999999998753
No 53
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=69.26 E-value=18 Score=29.94 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=38.1
Q ss_pred cCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc-cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 25 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 25 ~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn-nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+.-.+..+.|.++.-.+ | +++|+|.|. +=+.++.+..+|++|+++-+++.-
T Consensus 38 ~p~~~~ra~G~~l~Dvd-------------G--~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~ 89 (447)
T COG0160 38 FPLVIVRAEGAYLYDVD-------------G--NEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN 89 (447)
T ss_pred CcceEEecccCEEEeCC-------------C--CEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh
Confidence 33344667777776433 5 999999996 778888776679999999888765
No 54
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=67.51 E-value=7.1 Score=29.52 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.2
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHH
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVK 87 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~ 87 (100)
.++|||+++++ ++...|. +++++.++++
T Consensus 19 ~~~i~l~~~~~-~~~~~~~-~~~a~~~~~~ 46 (346)
T TIGR01141 19 KEVIKLNSNEN-PFGPPPK-AKEALRAEAD 46 (346)
T ss_pred CceEEccCCCC-CCCCCHH-HHHHHHHhHH
Confidence 58999999999 8988886 9999888764
No 55
>PRK06105 aminotransferase; Provisional
Probab=67.44 E-value=9.4 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=25.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|. .=||-+ ||+ |++|+++.+++.+.
T Consensus 48 ~~ylD~~~g~~~~~lGh~-~p~-i~~Ai~~q~~~~~~ 82 (460)
T PRK06105 48 KRYIEGMAGLWSVALGFS-EQR-LVEAAARQMKKLPF 82 (460)
T ss_pred CEEEEcchhHHhccCCCC-CHH-HHHHHHHHHHhCCC
Confidence 999999875 456665 565 99999999999764
No 56
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=66.65 E-value=21 Score=28.48 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred CcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 27 r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
..+....|.++.-.+ | +++|+|.|. .-||-+ ||+ |.+|+++.+++.+.
T Consensus 23 ~~~~~~~G~~l~D~d-------------G--~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~ql~~~~~ 73 (425)
T PRK09264 23 VVFDKAKGSWLYDED-------------G--KEYIDFFAGAGALNYGHN-NPV-LKQALIDYLQRDGI 73 (425)
T ss_pred ccEEeeecCEEEeCC-------------C--CEeeecccchhhccCCCC-CHH-HHHHHHHHHHhccc
Confidence 345667777776432 5 899999775 336763 564 99999999987554
No 57
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=64.98 E-value=4.4 Score=31.40 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=27.0
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHH-HhhCCCCCcCCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai-~~yG~gs~~srl 98 (100)
+.+..++|+||| +|. |+++..+.+ .+|+.|..+++.
T Consensus 20 ~~~~~~~~~~~~----~~~-v~~a~~~~~~~~~~~g~~~~~~ 56 (402)
T cd00378 20 ETLELIASENFT----SPA-VMEAMGSDLTNKYAEGYPGKRY 56 (402)
T ss_pred hCeeeeccCCcC----CHH-HHHHhcccccccccCCCCCCcc
Confidence 344555899998 675 999988765 789888877763
No 58
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=64.20 E-value=13 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=32.4
Q ss_pred ccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 29 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 29 i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+.+..|.++.-. +| +++|+|.|. .-||-+ ||+ |.+|+.+.+++...
T Consensus 28 ~~~a~G~~l~D~-------------dG--~~ylD~~~g~~~~~lGH~-~p~-v~~Ai~~ql~~~~~ 76 (445)
T PRK08593 28 IDHGYGATLTDV-------------DG--KTYIDLLASASSQNVGHA-PPR-VVEAIKAQADKFIH 76 (445)
T ss_pred EEeeeeCEEEeC-------------CC--CEEEECCccHHhhcCCCC-CHH-HHHHHHHHHHhccC
Confidence 456666666533 35 899999663 337874 675 99999999998654
No 59
>PRK06541 hypothetical protein; Provisional
Probab=59.86 E-value=18 Score=29.45 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=25.3
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|. .-||-+ ||+ |.+|+++.+++...
T Consensus 52 ~~ylD~~~g~~~~~lGh~-~p~-v~~Av~~q~~~~~~ 86 (460)
T PRK06541 52 KRYLDGLAGLFVVQVGHG-RAE-LAEAAAKQAGTLAF 86 (460)
T ss_pred CEEEECCccHHhccCCCC-CHH-HHHHHHHHHhhCcC
Confidence 899999774 447876 565 99999999998753
No 60
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=59.32 E-value=12 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.0
Q ss_pred ccEEEeccc-cccCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASY-NYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~Sn-nYLGla~~~~~v~~a~~~ai~~ 88 (100)
+++|||++| |++| ..|. +++++.+++..
T Consensus 34 ~~~i~l~~~~~~~~--~~~~-~~~~~~~~~~~ 62 (361)
T PRK00950 34 ESIIKLGSNENPLG--PSPK-AVEAIEKELSK 62 (361)
T ss_pred cceEEccCCCCCCC--CCHH-HHHHHHHHHHh
Confidence 689999999 6877 4665 88888887764
No 61
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=59.29 E-value=16 Score=29.58 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=21.8
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~ 88 (100)
+++|+|.+. .-||-+ || +|.+|+.+.+++
T Consensus 53 ~~yiD~~~g~~~~~lGh~-~p-~v~~ai~~q~~~ 84 (433)
T PRK00615 53 KTFIDFCGSWGSLIHGHS-HP-KICDAIQQGAER 84 (433)
T ss_pred CEEEEcccchhccccCCC-CH-HHHHHHHHHHHh
Confidence 899999774 335554 45 499999999986
No 62
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=58.74 E-value=39 Score=26.91 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=32.9
Q ss_pred CcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 27 r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
..+....|.++.-.+ | +++|+|.|. .=||-+ ||+ |.+|+++.+++.+.
T Consensus 19 ~~~~~~~G~~l~D~d-------------G--~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~ql~~~~~ 69 (412)
T TIGR02407 19 TVFEKAKGSTLWDED-------------G--KEYIDFFAGAGALNYGHN-NPK-LKQALIDYLADDGI 69 (412)
T ss_pred ceEEecccCEEEeCC-------------C--CEEEEcccchhhccCCCC-CHH-HHHHHHHHHhhccc
Confidence 345667777766432 5 899999764 236664 454 99999999987554
No 63
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=56.42 E-value=15 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.4
Q ss_pred ccEEEeccc-cccCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASY-NYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~Sn-nYLGla~~~~~v~~a~~~ai~~ 88 (100)
+++++|++| |++|. .|. +++++.+++++
T Consensus 32 ~~~i~l~~~~~~~~~--~~~-~~~a~~~~~~~ 60 (367)
T PRK02731 32 ADIIKLASNENPLGP--SPK-AIEAIRAAADE 60 (367)
T ss_pred CceEEecCCCCCCCC--CHH-HHHHHHHHHHh
Confidence 679999999 69885 565 88888887755
No 64
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=56.19 E-value=18 Score=29.28 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=25.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.+++..
T Consensus 43 ~~ylD~~~g~~~~~lGh~-~p~-i~~Ai~~q~~~~~ 76 (428)
T PRK07986 43 RRLVDGMSSWWAAIHGYN-HPQ-LNAAMKSQIDAMS 76 (428)
T ss_pred CEEEEcchhHHhhcCCCC-CHH-HHHHHHHHHhhcC
Confidence 899999874 577776 465 9999999999864
No 65
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=55.15 E-value=16 Score=29.48 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=25.2
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.| +.-||-++ |+ |.+|+.+.+++.+
T Consensus 44 ~~ylD~~~g~~~~~lGh~~-p~-v~~ai~~q~~~~~ 77 (429)
T PRK06173 44 RRLIDGMSSWWAALHGYNH-PR-LNAAATNQLAKMS 77 (429)
T ss_pred CEEEEccchHHhccCCCCC-HH-HHHHHHHHHHhcC
Confidence 89999987 55777764 65 9999999999865
No 66
>PRK07482 hypothetical protein; Provisional
Probab=55.06 E-value=17 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=23.7
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.+++.
T Consensus 50 ~~ylD~~sg~~~~~lGh~-~p~-v~~Av~~q~~~~ 82 (461)
T PRK07482 50 RRYIDAFAGLYCVNVGYG-RTE-VAEAIAEQAKEL 82 (461)
T ss_pred CEEEEcccchhhhcCCCC-CHH-HHHHHHHHHHhc
Confidence 899999875 446654 565 999999999984
No 67
>PF11015 DUF2853: Protein of unknown function (DUF2853); InterPro: IPR021274 This bacterial family of proteins has no known function. ; PDB: 2PYQ_B.
Probab=54.66 E-value=11 Score=25.32 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=16.4
Q ss_pred cCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 69 LGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 69 LGla~~~~~v~~a~~~ai~~yG~g 92 (100)
|||...|+ +.++..+.+++||-+
T Consensus 58 LGl~d~~~-ld~aI~~V~e~mg~s 80 (102)
T PF11015_consen 58 LGLSDDPE-LDAAINKVCEKMGKS 80 (102)
T ss_dssp T---SSHH-HHHHHHHHHHHH-TT
T ss_pred cCCCCcHH-HHHHHHHHHHHhccc
Confidence 79988886 999999999999865
No 68
>PRK07046 aminotransferase; Validated
Probab=53.32 E-value=24 Score=28.77 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=23.7
Q ss_pred ecCCcccEEEecccc-ccCCCCCChHHHHHHHHHHHh
Q psy2211 53 YTGTESTCLNLASYN-YLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 53 ~~G~~~~~lnf~Snn-YLGla~~~~~v~~a~~~ai~~ 88 (100)
.+| +++|+|.+.- -+.|+.+..+|.+|+.+.+++
T Consensus 72 ~DG--~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~ 106 (453)
T PRK07046 72 VDG--HRYDDFCLGDTGAMFGHSPAPVARALAEQARR 106 (453)
T ss_pred CCC--CEEEEecccccccccCCCCHHHHHHHHHHHHh
Confidence 346 8999986542 344555544599999999987
No 69
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=52.77 E-value=23 Score=28.15 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=23.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.+. .=||-+ ||+ +.+++.+++++.+
T Consensus 41 ~~~lD~~~g~~~~~lGh~-~~~-i~~a~~~~~~~~~ 74 (425)
T PRK08088 41 REYLDFAGGIAVLNTGHL-HPK-VVAAVEAQLKKLS 74 (425)
T ss_pred CEEEEcCCchhhcCCCCC-CHH-HHHHHHHHHhhCC
Confidence 889999763 227765 564 9999999999865
No 70
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=52.48 E-value=27 Score=27.75 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=24.1
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.+. .-||-+ ||+ +.+|+++.+++..
T Consensus 42 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~q~~~~~ 75 (423)
T PRK05964 42 RELIDAISSWWVATHGHN-HPY-IDQAIREQLDRLD 75 (423)
T ss_pred CEEEEcchhHHhccCCCC-CHH-HHHHHHHHHhhCC
Confidence 899999764 446665 464 9999999999865
No 71
>PRK07036 hypothetical protein; Provisional
Probab=52.01 E-value=26 Score=28.63 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=24.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|. .=||-+ ||+ |.+|+.+.+++...
T Consensus 51 ~~ylD~~~g~~~~~lGh~-~p~-v~~Ai~~q~~~~~~ 85 (466)
T PRK07036 51 RRYLDGIGGMWCVNVGYG-REE-MADAIADQARRLPY 85 (466)
T ss_pred CEEEECcccHHhhcCCCC-CHH-HHHHHHHHHHhCcc
Confidence 899998765 336665 565 99999999998643
No 72
>PRK06148 hypothetical protein; Provisional
Probab=51.74 E-value=25 Score=31.75 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=26.5
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|+ +..|+....+|.+|+.+.+++...
T Consensus 624 ~~ylD~~~g-~~~lGH~hp~v~~Ai~~q~~~l~~ 656 (1013)
T PRK06148 624 RAYLDCFNN-VCHVGHAHPRVVAAAARQAARLNT 656 (1013)
T ss_pred CEEEEcccC-hhhcCCCCHHHHHHHHHHHhhcCC
Confidence 999999986 577777655699999999988533
No 73
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=51.39 E-value=36 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred ccEEEeccccc-cCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASYNY-LGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~SnnY-LGla~~~~~v~~a~~~ai~~ 88 (100)
+++|+|.+.-. ..|+..+.+|++|+++.+++
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~ 79 (423)
T TIGR00713 48 NEYIDYVLSWGPLILGHAHPRVVEAVKEALER 79 (423)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 89999987532 12333434599999999986
No 74
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=49.31 E-value=33 Score=27.16 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=31.6
Q ss_pred CcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 27 r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
.++....|.++.-.+ | +++|+|.|. .=||- .||+ +.+|+++.+++.
T Consensus 8 ~~~~~~~G~~l~D~d-------------G--~~ylD~~~g~~~~~lGh-~~p~-v~~ai~~ql~~~ 56 (364)
T PRK04013 8 LRLVRGEGIYVWDSQ-------------G--RRYLDLIAGIGVNVLGH-NHPE-WVEEMSEQLEKL 56 (364)
T ss_pred ccEEEeecCEEEECC-------------C--CEEEEcccChhhccCCC-CCHH-HHHHHHHHHHhc
Confidence 345667777766432 5 899999774 33555 3464 999999999874
No 75
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=48.97 E-value=27 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.0
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.| +.-||-+ ||+ +.+|+.+.+++..
T Consensus 40 ~~ylD~~~g~~~~~lGh~-~p~-i~~ai~~q~~~~~ 73 (422)
T PRK05630 40 STVIDAMSSWWSAAHGHG-HPR-LKAAAHKQIDTMS 73 (422)
T ss_pred CEEEEcchhHHHhcCCCC-CHH-HHHHHHHHHHhCC
Confidence 99999977 4446654 454 9999999999865
No 76
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=48.78 E-value=27 Score=27.92 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=23.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.+++..
T Consensus 40 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~ql~~~~ 73 (421)
T PRK06777 40 REYIDFAAGIAVLNTGHR-HPK-VVAAVRQQLDQFT 73 (421)
T ss_pred CEEEEcccCHHhhccCCC-CHH-HHHHHHHHHhhcc
Confidence 899999765 336665 564 9999999999854
No 77
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=48.76 E-value=33 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=23.8
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.|. .=||- .||+ |.+++.+.+++...+
T Consensus 49 ~~ylD~~~g~~~~~lGh-~~p~-v~~ai~~ql~~l~~~ 84 (445)
T PRK09221 49 RKILDGTAGLWCCNAGH-GRPE-IVEAVARQAATLDYA 84 (445)
T ss_pred CEEEEccccHhhccCCC-CCHH-HHHHHHHHHHhccCc
Confidence 899999664 33666 3454 999999999985433
No 78
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=48.40 E-value=28 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=23.8
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .=||-+ ||+ |.+|+.+.+++..
T Consensus 56 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~q~~~~~ 89 (443)
T PRK06058 56 NRLIDLGSGIAVTSVGNS-APR-VVEAVREQVARFT 89 (443)
T ss_pred CEEEEcCcchhhhccCCC-CHH-HHHHHHHHHHhcc
Confidence 899999873 456654 454 9999999999853
No 79
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=47.97 E-value=39 Score=27.00 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=24.0
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ +.+|+.+.+++..
T Consensus 40 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~ql~~~~ 73 (421)
T PRK09792 40 NEYIDFAAGIAVLNTGHR-HPD-LVAAVEQQLQQFT 73 (421)
T ss_pred CEEEEccCchhhhcCCCC-CHH-HHHHHHHHHHhcc
Confidence 899998653 337775 665 9999999999854
No 80
>PLN00144 acetylornithine transaminase
Probab=44.79 E-value=47 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.8
Q ss_pred ccEEEeccccc---cCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASYNY---LGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~SnnY---LGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|.-. ||-+ || ++.+|+.+.+++..
T Consensus 15 ~~ylD~~~g~~~~~lGh~-~p-~v~~ai~~q~~~~~ 48 (382)
T PLN00144 15 KEYLDMAAGIAVNALGHG-DP-DWVKAVAEQAGTLA 48 (382)
T ss_pred CEEEECCcCHHhccCCCC-CH-HHHHHHHHHHHhcC
Confidence 89999987643 5654 35 49999999999754
No 81
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=44.07 E-value=46 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.7
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.+. .-||-+ ||+ |.+|+.+.+++..
T Consensus 33 ~~ylD~~~g~~~~~lGh~-~p~-v~~a~~~ql~~~~ 66 (420)
T TIGR00700 33 NRLIDFASGIAVLNIGHS-HPR-VVDAVRTQVAEFT 66 (420)
T ss_pred CEEEECccCHHhccCCCC-CHH-HHHHHHHHHHhcc
Confidence 899999775 346665 454 9999999999864
No 82
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=43.57 E-value=36 Score=27.38 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=23.5
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||- .||+ +.+|+.+.+++..
T Consensus 40 ~~ylD~~~g~~~~~lGh-~~p~-v~~ai~~ql~~l~ 73 (425)
T PRK07495 40 RRYIDFAAGIAVVNTGH-RHPR-VIAAVKAQLDRFT 73 (425)
T ss_pred CEEEEccccHHhhccCC-CCHH-HHHHHHHHHhhcc
Confidence 899998774 23676 3454 9999999999854
No 83
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=43.45 E-value=38 Score=27.42 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.|. .=||-+ || ++.+|+.+.+++...+
T Consensus 46 ~~ylD~~~g~~~~~lGh~-~p-~v~~ai~~ql~~l~~~ 81 (442)
T PRK13360 46 RRVLDGTAGLWCVNAGHG-RP-EIVEAVRAQAGELDYA 81 (442)
T ss_pred CEEEECchhHHHhccCCC-CH-HHHHHHHHHHHhCCCc
Confidence 899999765 225553 34 4999999999986443
No 84
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=43.14 E-value=61 Score=26.12 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ |.+|+++.+++..
T Consensus 54 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~q~~~~~ 87 (451)
T PRK06918 54 NQYIDFAGAIGTINVGHS-HPK-VKEALHKQVDQYI 87 (451)
T ss_pred CEEEEcCCchhhcCCCCC-CHH-HHHHHHHHHHhcc
Confidence 899999764 336654 564 9999999999853
No 85
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=42.96 E-value=45 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred ccEEEeccccc---cCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASYNY---LGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~SnnY---LGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|.-. ||-+ ||+ |.+|+.+.+++...
T Consensus 56 ~~ylD~~~g~~~~~lGh~-~p~-v~~Ai~~ql~~l~~ 90 (460)
T PRK06916 56 NEYYDGVSSIWLNVHGHQ-VPE-LDEAIREQLNKIAH 90 (460)
T ss_pred CEEEEcchhHHHhhcCCC-CHH-HHHHHHHHHHhCCC
Confidence 99999987532 4533 454 99999999998543
No 86
>PRK07678 aminotransferase; Validated
Probab=42.48 E-value=37 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=23.4
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.+++..
T Consensus 47 ~~ylD~~~g~~~~~lGh~-~p~-v~~ai~~q~~~~~ 80 (451)
T PRK07678 47 NRYLDGMSGLWCVNVGYG-RKE-LAEAAYEQLKTLS 80 (451)
T ss_pred CEEEEccccHHhhcCCCC-CHH-HHHHHHHHHHhcC
Confidence 899998763 337765 465 9999999998754
No 87
>PRK06917 hypothetical protein; Provisional
Probab=42.02 E-value=46 Score=26.99 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=23.7
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.+. .=||-+ ||+ |.+|+.+.+++..
T Consensus 31 ~~ylD~~~g~~~~~lGh~-hp~-v~~Ai~~ql~~~~ 64 (447)
T PRK06917 31 NKYFDGSSGAVTAGIGHG-VKE-IADAIKEQAEEVS 64 (447)
T ss_pred CEEEECchhHHhccCCCC-CHH-HHHHHHHHHhhCc
Confidence 899999765 335554 565 9999999999854
No 88
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=41.50 E-value=24 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=25.0
Q ss_pred eccccccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 63 LASYNYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 63 f~SnnYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|-+|-+--|.+ ++++|.+.++++|..
T Consensus 1 m~~n~~l~~RiD~~-vK~eA~~Vl~~mGlt 29 (88)
T COG3077 1 MAANASLNARIDDE-VKEEATAVLEEMGLT 29 (88)
T ss_pred CCccchhhheecHH-HHHHHHHHHHHhCCC
Confidence 46777888888887 999999999999975
No 89
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=41.39 E-value=51 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=24.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.++++..+
T Consensus 64 ~~ylD~~~g~~~~~lGh~-~p~-i~~Ai~~q~~~l~~~ 99 (472)
T PRK08742 64 RRYLDAVSSWWTNLFGHA-EPR-IGAAIAAQAGELEQV 99 (472)
T ss_pred CEEEEcCccHHhccCCCC-CHH-HHHHHHHHHHhCCCc
Confidence 899999774 346664 565 999999999876543
No 90
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=40.65 E-value=14 Score=27.53 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=16.9
Q ss_pred EeccccccCCCCCChHHHHHHHHHHH
Q psy2211 62 NLASYNYLGFGENTGLCTERSKESVK 87 (100)
Q Consensus 62 nf~SnnYLGla~~~~~v~~a~~~ai~ 87 (100)
+|+|+|++|. +|. +++++.+++.
T Consensus 1 ~~~~~~~~~~--~~~-v~~a~~~~~~ 23 (338)
T cd06502 1 DFRSDTVTGP--TPE-MLEAMAAANV 23 (338)
T ss_pred CcccccCCCC--CHH-HHHHHHhccc
Confidence 4899999994 554 7788777554
No 91
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=40.44 E-value=60 Score=26.53 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=24.1
Q ss_pred ccEEEecccc---ccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASYN---YLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Snn---YLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.|.- -||-+ ||+ |.+|+++.+++....
T Consensus 47 ~~ylD~~~g~~~~~lGh~-~p~-v~~Ai~~ql~~l~~~ 82 (466)
T PRK07030 47 KRYLDAVSSWWVNVFGHA-NPR-INQRIKDQVDQLEHV 82 (466)
T ss_pred CEEEEcchhHHhhcCCCC-CHH-HHHHHHHHHHhcCCc
Confidence 8999997752 35554 454 999999999986443
No 92
>PRK07480 putative aminotransferase; Validated
Probab=39.69 E-value=47 Score=27.03 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=23.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .=||-+ ||+ |.+|+.+.+++..
T Consensus 50 ~~ylD~~~g~~~~~lGh~-~p~-v~~Ai~~q~~~~~ 83 (456)
T PRK07480 50 NKILDGMAGLWCVNVGYG-RKE-LADAAARQMRELP 83 (456)
T ss_pred CEEEEccchHHHhcCCCC-CHH-HHHHHHHHHHhcC
Confidence 899999763 226665 565 9999999999864
No 93
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=38.51 E-value=1.7e+02 Score=23.32 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 12 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 12 f~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
-|...+..+|..||..|... .|.++.|.- ++..+| .+++ ...-++++. +-++++.++.+.+
T Consensus 263 ~Y~a~I~~~Iq~~~~~p~~~-~g~~v~V~I--------~L~pdG---~V~~-----I~~sSGd~~-lD~AAl~AV~ka~ 323 (346)
T TIGR02794 263 KYAAIIQQAIQQNLYDDPSF-RGKTCRLRI--------RLAPDG---TLLS-----VTKSSGDPA-LCQAALAAVAKAA 323 (346)
T ss_pred HHHHHHHHHHHhcCCCCccc-CCCEEEEEE--------EECCCC---CEEe-----eccCCCCHH-HHHHHHHHHHHhC
Confidence 45666788889999887643 465555422 122245 3444 445567886 8899999988764
No 94
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=38.41 E-value=38 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.6
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~y 89 (100)
..+++|++|++. +..+|. +.++..+++++.
T Consensus 29 ~~~i~l~~n~~~-~~~~~~-v~~a~~~~~~~~ 58 (359)
T PRK03158 29 EKIVKLASNENP-YGPSPK-VKEAIAAHLDEL 58 (359)
T ss_pred CceEEecCCCCC-CCCCHH-HHHHHHHHHHHh
Confidence 378999999876 666775 999988887654
No 95
>PRK07483 hypothetical protein; Provisional
Probab=38.04 E-value=40 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=32.3
Q ss_pred ccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEecc---ccccCCCCCChHHHHHHHHHHHhh
Q psy2211 24 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 24 ~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~y 89 (100)
.+...+....|.++.-. +| +++|+|.| +.=||-+ || +|.+++.+.+++.
T Consensus 11 ~~p~~i~~a~G~~l~D~-------------dG--~~ylD~~~g~~~~~lGh~-~p-~v~~av~~ql~~~ 62 (443)
T PRK07483 11 ATLPVAVAGEGIYLIDA-------------TG--KRYLDASGGAAVSCLGHS-HP-RVIAAIHAQIDRL 62 (443)
T ss_pred CCCceEEeceEEEEEeC-------------CC--CEEEEcCccHhhhccCCC-CH-HHHHHHHHHHHhc
Confidence 33344456666666532 25 89999987 4445554 34 4999999999875
No 96
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=37.90 E-value=46 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
+++|+|.|. .=||-++ |+ |.+|+.+.+++-
T Consensus 48 ~~ylD~~~g~~~~~lGh~~-p~-v~~Ai~~q~~~~ 80 (431)
T PRK06209 48 NEYIEYGMGLRAVGLGHAY-PP-VVEAVREALQDG 80 (431)
T ss_pred CEEEEccccccchhcCCCC-HH-HHHHHHHHHHhC
Confidence 899999764 3377653 54 999999999874
No 97
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=37.01 E-value=70 Score=26.02 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=23.8
Q ss_pred ccEEEecccc---ccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASYN---YLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Snn---YLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.|.= =||-+ || +|.+|+.+.+++.+..
T Consensus 54 ~~ylD~~~g~~~~~lGh~-~p-~v~~Ai~~ql~~~~~~ 89 (453)
T PRK06943 54 RRYLDAISSWWVNLFGHA-NP-RINAALKDQLDTLEHA 89 (453)
T ss_pred CEEEEcchHHHHhcCCCC-CH-HHHHHHHHHHHhcCCc
Confidence 8999997752 24543 24 4999999999986543
No 98
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=36.77 E-value=80 Score=25.81 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=21.1
Q ss_pred ccEEEecccc-ccCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASYN-YLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~Snn-YLGla~~~~~v~~a~~~ai~~ 88 (100)
+++|+|.|.= -+.|+.++.+|.+|+++.+++
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~ 94 (464)
T PRK06938 63 RQFIDCLAGAGTLALGHNHPVVIEAIQQVLAD 94 (464)
T ss_pred CEEEEccCCccccccCCCCHHHHHHHHHHHHh
Confidence 8999996641 233344433599999998874
No 99
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=36.60 E-value=79 Score=25.25 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=30.3
Q ss_pred cccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 28 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 28 ~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
.+....|.++.-. +| +++|+|.|- .=||-+ || ++.+|+.+.+++.
T Consensus 25 ~~~~a~G~~l~D~-------------dG--~~ylD~~~g~~~~~lGh~-~p-~v~~ai~~q~~~~ 72 (408)
T PRK04612 25 VLERGQGSRVWDD-------------QG--REYLDLAAGIAVCGLGHN-DP-DLVAALTEQAGKL 72 (408)
T ss_pred eEEEeeeCEEEEC-------------CC--CEEEEcCccHhhccCCCC-CH-HHHHHHHHHHHhc
Confidence 3466666666533 35 899999764 235554 45 4999999998874
No 100
>PRK07481 hypothetical protein; Provisional
Probab=36.59 E-value=54 Score=26.57 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=23.5
Q ss_pred ccEEEecc---ccccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLAS---YNYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~S---nnYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.| +.=||-++ |+ |.+|+.+.+++..
T Consensus 42 ~~ylD~~~g~~~~~lGh~~-p~-v~~Ai~~ql~~~~ 75 (449)
T PRK07481 42 KKLLDGVGGLWNVNVGHNR-EE-VKEAIVRQLDELE 75 (449)
T ss_pred CEEEECchhHHhhcCCCCC-HH-HHHHHHHHHHhcc
Confidence 89999976 34477654 54 9999999999854
No 101
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=34.11 E-value=78 Score=19.04 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhh
Q psy2211 13 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 13 ~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~y 89 (100)
|...+..+++..|..|-....+..+.+.-. +.-+|+ ++ +..-+.-++++. +-+++.++|++-
T Consensus 4 Y~~~i~~~i~~~w~~p~~~~~~~~~~V~i~--------i~~dG~---v~---~~~i~~sSG~~~-~D~av~~ai~~~ 65 (85)
T PF13103_consen 4 YFAQIQARIQQNWNPPPQDSGGLSVTVRIT--------IDPDGR---VI---SVRIVKSSGNPA-FDAAVRRAIRRA 65 (85)
T ss_dssp ----HHHHHHHH----TT--TT--EEEEEE--------E-TTSB---EE---EEEEEE--S-HH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCCCCCcEEEEEEE--------ECCCCC---EE---EEEEecCCCCHH-HHHHHHHHHHHc
Confidence 456677788888877754233333333111 111342 21 333344566776 888888888753
No 102
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=33.93 E-value=78 Score=25.88 Aligned_cols=33 Identities=6% Similarity=0.021 Sum_probs=24.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.++ .=||-+ ||+ |.+|+.+.+++....
T Consensus 82 ~~ylD~~~g~~~~~lGH~-~p~-v~~Ai~~ql~~l~~~ 117 (459)
T PRK11522 82 QEFIDCLGGFGIFNVGHR-NPV-VVSAVQNQLAKQPLH 117 (459)
T ss_pred CEEEECCcCHHhhhcCCC-CHH-HHHHHHHHHhhCccc
Confidence 899999876 445643 454 999999999876443
No 103
>PRK05965 hypothetical protein; Provisional
Probab=33.32 E-value=63 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=23.1
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .=||-+ ||+ |.+|+.+.+++..
T Consensus 46 ~~ylD~~~g~~~~~lGh~-~p~-i~~Ai~~q~~~~~ 79 (459)
T PRK05965 46 HQLLDAFAGLWCVNVGYG-QES-IVEAAAEQMRELP 79 (459)
T ss_pred CEEEECcccHHhccCCCC-CHH-HHHHHHHHHHhcC
Confidence 899999764 334554 465 9999999999854
No 104
>PRK14390 hypothetical protein; Provisional
Probab=33.22 E-value=40 Score=20.66 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+++|+++||+
T Consensus 20 ~PT-CS~Ya~~Ai~~~G~ 36 (63)
T PRK14390 20 IPS-CSSYGYEAITRHGP 36 (63)
T ss_pred Ccc-HHHHHHHHHHHhCc
Confidence 586 99999999999997
No 105
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=33.06 E-value=46 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=27.4
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCCcC
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 96 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~~s 96 (100)
+.+++|.+|. +|+. .+ .+.+++.+.+++|+.++.++
T Consensus 26 ~~~iyld~~a-~g~~-p~-~v~~a~~~~~~~~~~~~~~~ 61 (406)
T TIGR01814 26 NAVIYLDGNS-LGLM-PK-AARNALKEELDKWAKIAIRG 61 (406)
T ss_pred CCcEEecCCC-cCcC-cH-HHHHHHHHHHHHHHHhhhcc
Confidence 4578888887 8875 55 49999999999998765543
No 106
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.80 E-value=30 Score=26.74 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=22.9
Q ss_pred eccccccC--CCCCChHHHHHHHHHHHhhCC
Q psy2211 63 LASYNYLG--FGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 63 f~SnnYLG--la~~~~~v~~a~~~ai~~yG~ 91 (100)
.+=|||+| |..++. ..+...++|.++|.
T Consensus 123 ~GlnNhmGs~~tsn~~-aM~~~m~~Lk~r~l 152 (250)
T COG2861 123 VGLNNHMGSRFTSNED-AMEKLMEALKERGL 152 (250)
T ss_pred eeehhhhhhhhcCcHH-HHHHHHHHHHHCCe
Confidence 35589999 667775 89999999999886
No 107
>PF01809 Haemolytic: Haemolytic domain; InterPro: IPR002696 This is a family of short (70 amino acid) hypothetical proteins from various bacteria. They contain three conserved cysteine residues. Q44066 from SWISSPROT from Aeromonas hydrophila has been found to have hemolytic activity.
Probab=32.69 E-value=39 Score=20.77 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHhhCCC
Q psy2211 74 NTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~g 92 (100)
.|. |-+-+++|+++||.-
T Consensus 27 ~PS-CS~Y~~~ai~~~G~~ 44 (68)
T PF01809_consen 27 YPS-CSEYAKQAIRKYGLF 44 (68)
T ss_pred CCC-HHHHHHHHHHHhChH
Confidence 477 999999999999974
No 108
>PRK14382 hypothetical protein; Provisional
Probab=32.68 E-value=40 Score=20.94 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+++|+++||+
T Consensus 27 ~PT-CS~Ya~~Ai~~~G~ 43 (68)
T PRK14382 27 YPT-CSTYAILSIEKYGA 43 (68)
T ss_pred ccC-HHHHHHHHHHHhCc
Confidence 487 99999999999996
No 109
>PRK14384 hypothetical protein; Provisional
Probab=32.39 E-value=40 Score=20.28 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+-+++|+++||+
T Consensus 7 ~PT-CS~Ya~~Ai~~~G~ 23 (56)
T PRK14384 7 YPS-CSCYAETALKRFGV 23 (56)
T ss_pred ccc-HHHHHHHHHHHHCh
Confidence 476 99999999999996
No 110
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.02 E-value=63 Score=22.55 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=16.0
Q ss_pred cEEEeccccccC-CCCCChHHHHHHHH
Q psy2211 59 TCLNLASYNYLG-FGENTGLCTERSKE 84 (100)
Q Consensus 59 ~~lnf~SnnYLG-la~~~~~v~~a~~~ 84 (100)
=+|++|+||++. +..+++...+...+
T Consensus 83 vii~lGtND~~~~~~~~~~~~~~~l~~ 109 (208)
T cd01839 83 VIIMLGTNDLKSYFNLSAAEIAQGLGA 109 (208)
T ss_pred EEEeccccccccccCCCHHHHHHHHHH
Confidence 479999999874 33444434444433
No 111
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=31.06 E-value=42 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=24.3
Q ss_pred ccEEEe-ccccccCCCCCChHHHHHHHHHH-HhhCCCCCcCCC
Q psy2211 58 STCLNL-ASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSG 98 (100)
Q Consensus 58 ~~~lnf-~SnnYLGla~~~~~v~~a~~~ai-~~yG~gs~~srl 98 (100)
+.+||| +++||+ +|+ |+++..+.+ .+|+.|..+++.
T Consensus 25 ~~~~~l~~~~n~~----~~~-v~~a~~~~~~~~~~~~~~~~~~ 62 (416)
T PRK00011 25 EEHIELIASENFV----SPA-VMEAQGSVLTNKYAEGYPGKRY 62 (416)
T ss_pred hcCeeeecccCcC----CHH-HHHHHhchhhcccccCCCCccc
Confidence 455555 556673 665 888887764 578888877753
No 112
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=30.82 E-value=1.3e+02 Score=24.27 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.4
Q ss_pred cccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHh
Q psy2211 28 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 28 ~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~ 88 (100)
.+....|.++.-. +| +++|+|.|. .-||-+ || +|.+|+.+.+++
T Consensus 24 ~~~~~~G~~l~D~-------------dG--~~ylD~~~g~~~~~lGh~-~p-~i~~ai~~q~~~ 70 (442)
T TIGR00709 24 AFAKAQGCWVTDV-------------EG--KEYLDFLAGAGTLALGHN-HP-NMKQKILDYLQS 70 (442)
T ss_pred eEEeccccEEEeC-------------CC--CEEEEccccHhhhcCCCC-CH-HHHHHHHHHHHh
Confidence 3466667776633 25 899999775 335544 45 499999998887
No 113
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=30.27 E-value=1.3e+02 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.4
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|. .-||-+ || +|.+|+.+.+++...
T Consensus 41 ~~ylD~~~g~~~~~lGh~-~p-~v~~Ai~~ql~~~~~ 75 (443)
T PRK08360 41 NEYIDFLSDAAVQNVGHN-NP-RVVKAIKEQTDKLIH 75 (443)
T ss_pred CEEEEccccHhhcccCCC-CH-HHHHHHHHHHHhccC
Confidence 899999774 335554 45 499999999997543
No 114
>PRK14373 hypothetical protein; Provisional
Probab=29.97 E-value=46 Score=20.97 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+.+|+++||.
T Consensus 31 ~PT-CS~Ya~~Ai~~~G~ 47 (73)
T PRK14373 31 TPT-CSQYAVEAVKKYGA 47 (73)
T ss_pred CcC-HHHHHHHHHHHhCc
Confidence 586 99999999999997
No 115
>PRK06062 hypothetical protein; Provisional
Probab=29.87 E-value=1e+02 Score=24.95 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSG 90 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG 90 (100)
+++|+|.|. .-||-+ ||+ |.+|+.+.+++..
T Consensus 53 ~~ylD~~~g~~~~~lGh~-~p~-v~~Ai~~q~~~~~ 86 (451)
T PRK06062 53 RRYLDFSSQLVNTNIGHQ-HPK-VVAAIQEQAARLC 86 (451)
T ss_pred CEEEEcccCHHhhcCCCC-CHH-HHHHHHHHHHhcC
Confidence 899999774 446654 354 9999999998753
No 116
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=29.85 E-value=1.3e+02 Score=24.27 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=23.3
Q ss_pred ccEEEeccccc-cCCCCCChHHHHHHHHHHHhhCC
Q psy2211 58 STCLNLASYNY-LGFGENTGLCTERSKESVKQSGC 91 (100)
Q Consensus 58 ~~~lnf~SnnY-LGla~~~~~v~~a~~~ai~~yG~ 91 (100)
+++|+|.|.-. +.|+.+..+|.+|+.+.+++...
T Consensus 54 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~ 88 (441)
T PRK05769 54 NVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLH 88 (441)
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhccC
Confidence 89999987643 22333333499999999987543
No 117
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=28.44 E-value=21 Score=21.41 Aligned_cols=11 Identities=36% Similarity=0.766 Sum_probs=8.3
Q ss_pred eccccccCCCCCCh
Q psy2211 63 LASYNYLGFGENTG 76 (100)
Q Consensus 63 f~SnnYLGla~~~~ 76 (100)
=|||||| | ||.
T Consensus 30 nCsYDYl-l--HPA 40 (56)
T PF13978_consen 30 NCSYDYL-L--HPA 40 (56)
T ss_pred CCcceee-e--cch
Confidence 4899998 2 675
No 118
>PRK14383 hypothetical protein; Provisional
Probab=27.86 E-value=54 Score=21.24 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHhhCCC
Q psy2211 74 NTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~g 92 (100)
.|. |-+=+++|+++||.-
T Consensus 31 ~PT-CS~Ya~~Ai~~~G~~ 48 (84)
T PRK14383 31 SPT-CSQYAVEAIERHGAL 48 (84)
T ss_pred Ccc-HHHHHHHHHHHhCcH
Confidence 586 999999999999963
No 119
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=27.62 E-value=1.3e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=21.2
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~ 88 (100)
+++|+|.|. .-||- .|| +|.+|+.+.+++
T Consensus 58 ~~ylD~~~g~~~~~lGH-~~p-~v~~Ai~~q~~~ 89 (459)
T PRK06931 58 NQYLDCLAGAGTLALGH-NHP-DVLQSIQDVLTS 89 (459)
T ss_pred CEEEEcccchhhccCCC-CCH-HHHHHHHHHHhh
Confidence 899999876 33553 234 499999998875
No 120
>PLN02938 phosphatidylserine decarboxylase
Probab=27.57 E-value=55 Score=27.12 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHhhh
Q psy2211 6 YEKFVLFYSRYVYRRI 21 (100)
Q Consensus 6 ~~~f~~f~~r~~~~r~ 21 (100)
|..|.+||+|.++...
T Consensus 141 Y~SfndFFtRkLKpga 156 (428)
T PLN02938 141 YASLREFFVRSLKEGA 156 (428)
T ss_pred CCCHHHhheeccCCCC
Confidence 5678888999887644
No 121
>PRK14380 hypothetical protein; Provisional
Probab=27.49 E-value=51 Score=21.21 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHhhCCC
Q psy2211 74 NTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~g 92 (100)
.|. |-+=+++|+++||.-
T Consensus 34 ~PT-CS~Ya~~Ai~~~G~~ 51 (81)
T PRK14380 34 YPS-CSEYADSAIKHYGVI 51 (81)
T ss_pred CcC-HHHHHHHHHHHhChH
Confidence 576 999999999999973
No 122
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=19 Score=26.12 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=12.2
Q ss_pred CCCchhhhHHHHHHHHHHhhh
Q psy2211 1 GYPDLYEKFVLFYSRYVYRRI 21 (100)
Q Consensus 1 ~~~pl~~~f~~f~~r~~~~r~ 21 (100)
||.|=|+.+|..| .+.++++
T Consensus 38 GfTpQYegLe~Ly-~ky~~~G 57 (162)
T COG0386 38 GFTPQYEGLEALY-KKYKDKG 57 (162)
T ss_pred CCcHhHHHHHHHH-HHHhhCC
Confidence 5677778777766 3334433
No 123
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=26.94 E-value=1.3e+02 Score=24.83 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=23.1
Q ss_pred cCCcccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 54 TGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 54 ~G~~~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
+| +++|+|.+. .-||-+ || +|.+++.+.+++.
T Consensus 97 dG--~~yiD~~~g~g~~~lGh~-~p-~v~~av~~ql~~~ 131 (474)
T PLN02482 97 DG--NEYIDYVGSWGPAIIGHA-DD-EVLAALAETMKKG 131 (474)
T ss_pred CC--CEEEEecccccccccCCC-CH-HHHHHHHHHHhhC
Confidence 46 899999764 335554 35 4999999999863
No 124
>PRK14391 hypothetical protein; Provisional
Probab=26.85 E-value=54 Score=21.24 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+++|+++||.
T Consensus 27 ~PT-CS~Ya~~Ai~~~G~ 43 (84)
T PRK14391 27 TPT-CSEYAAQAFQECGF 43 (84)
T ss_pred CcC-HHHHHHHHHHHhCc
Confidence 576 99999999999996
No 125
>PRK14375 hypothetical protein; Provisional
Probab=26.69 E-value=55 Score=20.50 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+++|+++||+
T Consensus 21 ~PT-CS~Ya~~Ai~~~G~ 37 (70)
T PRK14375 21 YPT-CSEYALEALKTHGI 37 (70)
T ss_pred CcC-HHHHHHHHHHHhCh
Confidence 576 99999999999997
No 126
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=26.23 E-value=1.5e+02 Score=24.21 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=22.4
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
+++|+|.|. .-||-+ || +|.+|+++.+++.
T Consensus 53 ~~ylD~~~g~~~~~lGh~-~p-~i~~Ai~~ql~~~ 85 (457)
T PRK05639 53 NVFIDFLAGAAAASTGYS-HP-KLVKAVQEQVALI 85 (457)
T ss_pred CEEEECCcCHHhhccCCC-CH-HHHHHHHHHHHhc
Confidence 899999774 345543 34 4999999999875
No 127
>KOG3779|consensus
Probab=26.08 E-value=41 Score=28.76 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=44.9
Q ss_pred CchhhhHHHHHHHHHHhhhhcccCCcccCCCCCeEEEeecccCCCCceeeecCCcccEEEeccccccCCCCCChHHHHHH
Q psy2211 3 PDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 82 (100)
Q Consensus 3 ~pl~~~f~~f~~r~~~~r~~d~~~r~i~~~~g~~i~~~~r~~~~~~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~ 82 (100)
+.||+.|.+||...|..-.+...+.-|++...-.|+- + -+.=++||+--|--=-|-. |+.+++.|
T Consensus 621 iKWFSNFREFYY~QMEK~ARQAi~dGvT~~~ei~itr-D-------------~EL~r~LN~HYNk~N~~~~-PeR~~~V~ 685 (737)
T KOG3779|consen 621 IKWFSNFREFYYIQMEKYARQAINDGVTSTEELSITR-D-------------CELYRALNMHYNKANDFEV-PERFLEVA 685 (737)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCchhheeeec-c-------------HHHHHHHHhhhcccccccc-cHHHHHHH
Confidence 5799999999998887777777666555544433331 1 1112457765443223333 44588888
Q ss_pred HHHHHhh
Q psy2211 83 KESVKQS 89 (100)
Q Consensus 83 ~~ai~~y 89 (100)
+++|++|
T Consensus 686 Q~TLREF 692 (737)
T KOG3779|consen 686 QITLREF 692 (737)
T ss_pred HHHHHHH
Confidence 8888876
No 128
>COG1912 Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=37 Score=26.49 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=30.4
Q ss_pred CceeeecCCcccEEEeccccccCCCCCChHHHHHHHHHHHhhCCCCC
Q psy2211 48 GWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALC 94 (100)
Q Consensus 48 ~~~~~~~G~~~~~lnf~SnnYLGla~~~~~v~~a~~~ai~~yG~gs~ 94 (100)
.+||-....++.++-.+|..+|++|-+.. .|.++||++.+
T Consensus 221 v~tfg~v~~Ge~l~~~nS~g~lEiaVn~G-------saa~~l~v~~g 260 (268)
T COG1912 221 VKTFGDVDEGELLALINSLGNLEIAVNMG-------SAAEKLGVKEG 260 (268)
T ss_pred EeeeccCCCCCeEEEecCCCcEEEEEecC-------CHHHHhCCCCC
Confidence 34444445558899999999999999987 56677888854
No 129
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=25.57 E-value=65 Score=24.95 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=23.3
Q ss_pred ccEEEecccc-ccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASYN-YLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Snn-YLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|+|.. =+.|+.+...+.+++.+.+++....
T Consensus 16 ~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~ 51 (339)
T PF00202_consen 16 REYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYV 51 (339)
T ss_dssp EEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSC
T ss_pred CEEEECCCCccceecCCCccccchhHHHHhhhcccc
Confidence 8999997631 2334444334999999999886554
No 130
>PRK10721 hypothetical protein; Provisional
Probab=25.41 E-value=48 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=16.5
Q ss_pred cCCCCCChHHHHHHHHHHHh
Q psy2211 69 LGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 69 LGla~~~~~v~~a~~~ai~~ 88 (100)
=||..+|.+|-+...|||+.
T Consensus 40 ~~FdDdp~~~~EkiLEAIQ~ 59 (66)
T PRK10721 40 EDFDDDPQASNEKILEAILL 59 (66)
T ss_pred cCcCCCcccccHHHHHHHHH
Confidence 46889988899999998863
No 131
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=24.72 E-value=67 Score=17.47 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=7.4
Q ss_pred cEEEeccccccC
Q psy2211 59 TCLNLASYNYLG 70 (100)
Q Consensus 59 ~~lnf~SnnYLG 70 (100)
..-|||-||+.+
T Consensus 22 nfsnfc~ynfi~ 33 (37)
T PF08199_consen 22 NFSNFCHYNFIG 33 (37)
T ss_pred ccccceeeeeee
Confidence 345677777654
No 132
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=24.65 E-value=37 Score=25.41 Aligned_cols=17 Identities=18% Similarity=0.211 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHhhhh
Q psy2211 6 YEKFVLFYSRYVYRRIV 22 (100)
Q Consensus 6 ~~~f~~f~~r~~~~r~~ 22 (100)
|+.|.+||+|.++.-.+
T Consensus 12 y~s~n~FF~R~lk~~~R 28 (238)
T TIGR00163 12 YRSLNEFFIRPLKLERR 28 (238)
T ss_pred CCCHHHheeecCCCCCC
Confidence 67899999999976433
No 133
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=24.55 E-value=1.4e+02 Score=24.80 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=26.6
Q ss_pred ecCCcccEEEec-cccccCCCCCChHHHHHHHHHHHhhCCCCC
Q psy2211 53 YTGTESTCLNLA-SYNYLGFGENTGLCTERSKESVKQSGCALC 94 (100)
Q Consensus 53 ~~G~~~~~lnf~-SnnYLGla~~~~~v~~a~~~ai~~yG~gs~ 94 (100)
.+| +++|+|+ ++==|-|++.+..|++|+++.+++ |+.-+
T Consensus 50 vDG--n~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-G~~fg 89 (432)
T COG0001 50 VDG--NEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-GLSFG 89 (432)
T ss_pred CCC--CEeeehhccCcccccCCCCHHHHHHHHHHHHh-cCCCC
Confidence 346 8888886 444566777666699998888875 44433
No 134
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=24.53 E-value=1.6e+02 Score=23.52 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=21.0
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhh
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQS 89 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~y 89 (100)
+++|+|.|. .=||-+ || +|.+|+.+.+++.
T Consensus 53 ~~ylD~~~g~~~~~lGh~-~p-~v~~ai~~q~~~~ 85 (428)
T PRK12389 53 NKYIDYLAAYGPIITGHA-HP-HITKAITEAAENG 85 (428)
T ss_pred CEEEEccccccccccCCC-CH-HHHHHHHHHHHhC
Confidence 899998653 225543 34 4999999988863
No 135
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=24.41 E-value=53 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHhhhhccc--CCcccCCCCCeEEEee
Q psy2211 6 YEKFVLFYSRYVYRRIVDCF--NRPVTSVPGAIITIKD 41 (100)
Q Consensus 6 ~~~f~~f~~r~~~~r~~d~~--~r~i~~~~g~~i~~~~ 41 (100)
|+.|.+||+|.++...+..- ...+.++....+...+
T Consensus 60 y~s~~~FF~R~lk~~~Rpi~~~~~~ivSPaDG~v~~~~ 97 (288)
T PRK00044 60 YKTFNDFFTRALKDGARPIDEDPNALVSPADGAISQLG 97 (288)
T ss_pred CCCHHHhceecccCCCCCCCCCCCEEEeCCCceEEeEE
Confidence 67888999999876443322 1224444444444333
No 136
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=23.88 E-value=46 Score=25.30 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHhhhhccc--CCcccCCCCCeEEEeec
Q psy2211 6 YEKFVLFYSRYVYRRIVDCF--NRPVTSVPGAIITIKDR 42 (100)
Q Consensus 6 ~~~f~~f~~r~~~~r~~d~~--~r~i~~~~g~~i~~~~r 42 (100)
|+.|.+||+|.++.-.+..- ...+.+++...+...+.
T Consensus 56 y~sfn~FF~R~lk~~~Rpi~~~~~~vvSPaDg~v~~~~~ 94 (259)
T PRK03140 56 YRTLHELFTRKLKEGKRPIDTDASSIVSPVDGVFADVGP 94 (259)
T ss_pred CCCHHHhceecCCCCCCCCCCCCCEEEeCCCcEEEEEee
Confidence 67889999999975433221 12234444444544443
No 137
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=23.49 E-value=53 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.9
Q ss_pred ccCCCCCChHHHHHHHHHHHhhCCCC
Q psy2211 68 YLGFGENTGLCTERSKESVKQSGCAL 93 (100)
Q Consensus 68 YLGla~~~~~v~~a~~~ai~~yG~gs 93 (100)
-|||... -..+...++.+||+|.
T Consensus 38 VlGFn~r---QR~~Fln~vMR~G~~~ 60 (145)
T PF06461_consen 38 VLGFNPR---QRKAFLNAVMRYGMGA 60 (145)
T ss_pred EeccCHH---HHHHHHHHHHHHCcCc
Confidence 4678554 4599999999999964
No 138
>PF04384 Fe-S_assembly: Iron-sulphur cluster assembly; InterPro: IPR007479 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents IscX proteins (also known as hypothetical protein YfhJ) that are part of the ISC system. IscX is active as a monomer. The structure of YfhJ is an orthogonal alpha-bundle []. YfhJ is a small acidic protein that binds IscS, and contains a modified winged helix motif that is usually found in DNA-binding proteins []. YfhJ/IscX can bind Fe, and may function as an Fe donor in the assembly of FeS clusters ; GO: 0016226 iron-sulfur cluster assembly; PDB: 2BZT_A 1UJ8_A.
Probab=22.62 E-value=60 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=12.9
Q ss_pred cCCCCCChHHHHHHHHHHHh
Q psy2211 69 LGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 69 LGla~~~~~v~~a~~~ai~~ 88 (100)
=||..+|.+|.+...+||+.
T Consensus 38 ~~F~Ddp~~~~E~iLEaIq~ 57 (64)
T PF04384_consen 38 PDFDDDPKRCNEKILEAIQM 57 (64)
T ss_dssp TTB-S-CCG--HHHHHHHHH
T ss_pred cCcCCCccccCHHHHHHHHH
Confidence 46888988899999998863
No 139
>PF10792 DUF2605: Protein of unknown function (DUF2605); InterPro: IPR019728 This entry represents a protein conserved in Cyanobacteria. The function is not known.
Probab=22.58 E-value=52 Score=22.00 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.5
Q ss_pred CchhhhHHHHHHHH
Q psy2211 3 PDLYEKFVLFYSRY 16 (100)
Q Consensus 3 ~pl~~~f~~f~~r~ 16 (100)
.||+.||+..|.|.
T Consensus 13 ~pLLeDF~yWF~Rs 26 (98)
T PF10792_consen 13 EPLLEDFQYWFSRS 26 (98)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999998888765
No 140
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.48 E-value=1e+02 Score=21.01 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=18.5
Q ss_pred cEEEeccccccCCCCCChHHHHHHHHHHHh
Q psy2211 59 TCLNLASYNYLGFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 59 ~~lnf~SnnYLGla~~~~~v~~a~~~ai~~ 88 (100)
=+|++|.||...... ++...+...+.+++
T Consensus 71 Vii~~G~ND~~~~~~-~~~~~~~l~~li~~ 99 (191)
T cd01836 71 AVISIGVNDVTHLTS-IARWRKQLAELVDA 99 (191)
T ss_pred EEEEecccCcCCCCC-HHHHHHHHHHHHHH
Confidence 469999999875433 33366666555544
No 141
>PRK14388 hypothetical protein; Provisional
Probab=22.37 E-value=75 Score=20.52 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+.+|+++||.
T Consensus 27 ~PT-CS~Ya~~Ai~~~G~ 43 (82)
T PRK14388 27 HPT-CSEYAKEAISMHGS 43 (82)
T ss_pred CcC-HHHHHHHHHHHhCc
Confidence 576 99999999999997
No 142
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=22.27 E-value=1.6e+02 Score=24.07 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=23.6
Q ss_pred ccEEEeccc---cccCCCCCChHHHHHHHHHHHhhCCC
Q psy2211 58 STCLNLASY---NYLGFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 58 ~~~lnf~Sn---nYLGla~~~~~v~~a~~~ai~~yG~g 92 (100)
+++|+|.++ .=||- .|| +|.+|+.+.+++....
T Consensus 75 ~~ylD~~~g~~~~~lGh-~hp-~v~~Av~~ql~~l~~~ 110 (442)
T TIGR03372 75 NEFIDCLGGFGIFNVGH-RNP-NVIAAVENQLAKQPLH 110 (442)
T ss_pred CEEEECCccHHhhhcCC-CCH-HHHHHHHHHHHhCCCc
Confidence 899999775 22553 345 4999999999876543
No 143
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=22.22 E-value=1.1e+02 Score=20.68 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=17.4
Q ss_pred ccEEEeccccccCCC-CCChHHHHHHHHHH
Q psy2211 58 STCLNLASYNYLGFG-ENTGLCTERSKESV 86 (100)
Q Consensus 58 ~~~lnf~SnnYLGla-~~~~~v~~a~~~ai 86 (100)
--+|++|+||..... .+...+.++..+.+
T Consensus 58 ~vii~~G~ND~~~~~~~~~~~~~~~~~~li 87 (169)
T cd01831 58 LVVINLGTNDFSTGNNPPGEDFTNAYVEFI 87 (169)
T ss_pred EEEEECCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 457999999997543 23333555544433
No 144
>PRK14371 hypothetical protein; Provisional
Probab=21.78 E-value=79 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+.+|+++||+
T Consensus 27 ~PT-CS~Ya~~ai~~~G~ 43 (81)
T PRK14371 27 YPS-CSCYAYEAIENHGL 43 (81)
T ss_pred CcC-HHHHHHHHHHHhCc
Confidence 687 99999999999997
No 145
>TIGR00278 conserved hypothetical protein YidD. This model describes a family of small proteins of unknown function restricted to and broadly but not universally distributed among the Bacteria. Members frequently are found in the vicinity of rnpA, the gene for the protein subunit of ribonuclease P. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli.
Probab=21.67 E-value=81 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
-|. |-+=+.+|+++||.
T Consensus 23 ~PT-CS~Ya~~ai~~~G~ 39 (75)
T TIGR00278 23 YPT-CSQYAIEALKTHGF 39 (75)
T ss_pred CcC-HHHHHHHHHHHhCc
Confidence 376 99999999999996
No 146
>PRK14385 hypothetical protein; Provisional
Probab=21.52 E-value=77 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+.+|+++||+
T Consensus 36 ~PT-CSeYa~~Ai~~~G~ 52 (96)
T PRK14385 36 KPS-CSNYALECLKKYNI 52 (96)
T ss_pred Ccc-HHHHHHHHHHHhCh
Confidence 587 99999999999996
No 147
>PRK14387 hypothetical protein; Provisional
Probab=20.94 E-value=87 Score=20.29 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
.|. |-+=+++|+++||.
T Consensus 30 ~PT-CS~Ya~~Ai~~~G~ 46 (84)
T PRK14387 30 TPS-CSEYTAAALKDHGP 46 (84)
T ss_pred CcC-HHHHHHHHHHHhCh
Confidence 586 99999999999996
No 148
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.88 E-value=71 Score=16.53 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=6.2
Q ss_pred hhHHHHHHH
Q psy2211 7 EKFVLFYSR 15 (100)
Q Consensus 7 ~~f~~f~~r 15 (100)
+.|++||.|
T Consensus 7 d~f~eFY~r 15 (28)
T PF12108_consen 7 DPFSEFYER 15 (28)
T ss_dssp -HHHHHHHH
T ss_pred ChHHHHHHH
Confidence 468888865
No 149
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.79 E-value=1.2e+02 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.9
Q ss_pred CCCCCChHHHHHHHHHHHhhCCC
Q psy2211 70 GFGENTGLCTERSKESVKQSGCA 92 (100)
Q Consensus 70 Gla~~~~~v~~a~~~ai~~yG~g 92 (100)
|...+|+ +++++++.+++.|..
T Consensus 17 ~~~T~P~-vv~avv~~l~~~g~~ 38 (206)
T PF04015_consen 17 GATTHPE-VVRAVVEMLKEAGAK 38 (206)
T ss_pred CccCCHH-HHHHHHHHHHHcCCC
Confidence 8889997 999999999998875
No 150
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.48 E-value=97 Score=20.66 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhCCC
Q psy2211 78 CTERSKESVKQSGCA 92 (100)
Q Consensus 78 v~~a~~~ai~~yG~g 92 (100)
..+.+.+|+++||.-
T Consensus 28 a~~vV~eALeKygL~ 42 (100)
T cd01781 28 ADRIVGEALEKYGLE 42 (100)
T ss_pred HHHHHHHHHHHhCCC
Confidence 678888999999974
No 151
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.46 E-value=1.6e+02 Score=19.73 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=16.2
Q ss_pred ccEEEeccccccCCCCCChHHHHHHHHHHH
Q psy2211 58 STCLNLASYNYLGFGENTGLCTERSKESVK 87 (100)
Q Consensus 58 ~~~lnf~SnnYLGla~~~~~v~~a~~~ai~ 87 (100)
.-+|++|+||.. -...++...+...+.++
T Consensus 53 ~vvi~~G~ND~~-~~~~~~~~~~~~~~lv~ 81 (171)
T cd04502 53 RVVLYAGDNDLA-SGRTPEEVLRDFRELVN 81 (171)
T ss_pred EEEEEEecCccc-CCCCHHHHHHHHHHHHH
Confidence 357899999963 22234445444444433
No 152
>KOG2420|consensus
Probab=20.33 E-value=65 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHhhhhccc-CCcccCC-CCCeEE
Q psy2211 6 YEKFVLFYSRYVYRRIVDCF-NRPVTSV-PGAIIT 38 (100)
Q Consensus 6 ~~~f~~f~~r~~~~r~~d~~-~r~i~~~-~g~~i~ 38 (100)
|..|.+||+|.|++-.+-+- ..|+.++ .|..+.
T Consensus 133 Y~nlaeFF~RkLKpg~RpIdp~~piVSPaDGkIL~ 167 (382)
T KOG2420|consen 133 YRNLAEFFTRKLKPGTRPIDPASPLVSPADGKILH 167 (382)
T ss_pred hhhHHHHHhhccCCCCcccCCCCceecCCCCcEEE
Confidence 67889999999987655443 4455443 334333
No 153
>COG0759 Uncharacterized conserved protein [Function unknown]
Probab=20.25 E-value=85 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHhhCC
Q psy2211 74 NTGLCTERSKESVKQSGC 91 (100)
Q Consensus 74 ~~~~v~~a~~~ai~~yG~ 91 (100)
-|. |-+-|+|||+++|+
T Consensus 32 ~PT-CS~Ya~eAi~~hG~ 48 (92)
T COG0759 32 YPT-CSEYAIEALKKHGL 48 (92)
T ss_pred ccc-HHHHHHHHHHHhch
Confidence 476 99999999999995
No 154
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=20.19 E-value=73 Score=19.65 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=16.1
Q ss_pred CCCCCChHHHHHHHHHHHh
Q psy2211 70 GFGENTGLCTERSKESVKQ 88 (100)
Q Consensus 70 Gla~~~~~v~~a~~~ai~~ 88 (100)
||..+|.+|-+...+||+.
T Consensus 38 ~FdDdp~~~~EkiLEaIQ~ 56 (63)
T TIGR03412 38 GFDDDPKRCNEKILEAIQM 56 (63)
T ss_pred CcCCCcccccHHHHHHHHH
Confidence 7889988899999998863
Done!