RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2211
         (100 letters)



>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
          (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
          [TaxId: 562]}
          Length = 383

 Score = 44.5 bits (104), Expect = 2e-07
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 22/79 (27%)

Query: 18 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 77
           RR       PV    G  +   DR+                 LN +S +YLG   +  +
Sbjct: 19 LRRR-----YPVAQGAGRWLVADDRQ----------------YLNFSSNDYLGLSHHPQI 57

Query: 78 CTERSKESVKQSGCALCSP 96
               ++  +Q G      
Sbjct: 58 -IRAWQQGAEQFGIGSGGS 75


>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
          {Escherichia coli [TaxId: 562]}
          Length = 401

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)

Query: 27 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 86
          R +TS   A IT+ D                   +N  + NYLG   +  L    +K  +
Sbjct: 29 RIITSAQQADITVADGSH---------------VINFCANNYLGLANHPDLI-AAAKAGM 72

Query: 87 KQSGCALCSP 96
             G  + S 
Sbjct: 73 DSHGFGMASV 82


>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase
          {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 396

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 15/82 (18%)

Query: 18 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 77
          YR  +D   R   + P A     D             G +         +YLG G++  +
Sbjct: 19 YRTFID-IEREKGAFPKAQWNRPD-------------GGKQDITVWCGNDYLGMGQHPVV 64

Query: 78 CTERSKESVKQSGCALCSPSGE 99
                E+++  G         
Sbjct: 65 L-AAMHEALEAVGAGSGGTRNI 85


>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 149

 Score = 25.0 bits (54), Expect = 1.7
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 13  YSRYVYRRIVDCFNRPVTSVPGAII 37
            +R  Y   V  +N  +   PG I 
Sbjct: 109 VARRDYNEAVKKYNTAIKKFPGVIF 133


>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein
          NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 81

 Score = 22.7 bits (48), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 23 DCFNRPVTSVPGAIITIKDRET 44
           C N P  S PG  IT K+ +T
Sbjct: 53 TCVNAPPISKPGQKITCKENKT 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,241
Number of extensions: 16284
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)