BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2212
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 28 SELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSN--PSNINPIVSLIHSCWSDLLCCG 85
+EL+A+LL L+ KE I++DS+ L +S+ + +PIV I + L
Sbjct: 1063 AELMAILLALQD----SKETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKK 1114
Query: 86 KQLAFLWCPSHTGIQGNEAVDR 107
+Q+ W P+H GI GNE +D+
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDK 1136
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 39.7 bits (91), Expect = 0.024, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 28 SELIAVLLCLKHLKFLPKEKFVIISDSKSTL-LALSNPSNIN-PIVSLIHSCWSDLLCCG 85
+EL+AVL+ L+ KE+ I++DS+ L + S P+ + PIV I + L
Sbjct: 1065 AELMAVLIALQD----SKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEELTKK 1116
Query: 86 KQLAFLWCPSHTGIQGNEAVDR 107
+++ W P+H GI GNE +D+
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDK 1138
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 28 SELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNINPIVSLIHSCWSDLL-CCGK 86
+E+ A+LL LK E+ II+DS+ L N N P L+ W ++L K
Sbjct: 632 AEVQALLLALK----AGSEEMNIITDSQYIL----NILNQQP--DLMEGLWQEVLEQMEK 681
Query: 87 QLAFL--WCPSHTGIQGNEAVDR 107
++A W P H GI GNE VD+
Sbjct: 682 KIAIFIDWVPGHKGIPGNEEVDK 704
>sp|Q2GDA1|RNH_NEOSM Ribonuclease H OS=Neorickettsia sennetsu (strain Miyayama) GN=rnhA
PE=3 SV=1
Length = 151
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 82 LCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLPPLKLCSPE 125
+ + +LW +H G NE VDR AR +AS C PE
Sbjct: 111 IAAAHTVRWLWVKAHNGDHYNEIVDRVARKEAASFTN---CEPE 151
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 28 SELIAVLLCLKHLKFLPKEKFVIISDSKSTL-LALSNPSNINPIVSLIHSCWSDLL--CC 84
+E+ A+LL LK E+ II+DS+ + + L P ++ W ++L
Sbjct: 633 AEIQALLLALK----AGSEEMNIITDSQYVINIILQQPD-------MMEGIWQEVLEELE 681
Query: 85 GKQLAFL-WCPSHTGIQGNEAVDR 107
K F+ W P H GI GNE VD+
Sbjct: 682 KKTAIFIDWVPGHKGIPGNEEVDK 705
>sp|Q49622|NADA_MYCLE Quinolinate synthase A OS=Mycobacterium leprae (strain TN) GN=nadA
PE=3 SV=2
Length = 352
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 85 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 116
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|B8ZR90|NADA_MYCLB Quinolinate synthase A OS=Mycobacterium leprae (strain Br4923)
GN=nadA PE=3 SV=1
Length = 352
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 85 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 116
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 28 SELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSN-PSNINPIVSLIHSCWSDLL--CC 84
+E+ A+LL LK E+ II+DS+ + LS P + I W ++L
Sbjct: 633 AEIQALLLALK----AGPEEMNIITDSQYMINILSQQPDKMEGI-------WQEVLEELE 681
Query: 85 GKQLAFL-WCPSHTGIQGNEAVDR 107
K F+ W P H GI GNE VD+
Sbjct: 682 KKTAIFIDWVPGHKGIPGNEEVDK 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,166,460
Number of Sequences: 539616
Number of extensions: 4070615
Number of successful extensions: 9520
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9520
Number of HSP's gapped (non-prelim): 9
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)