Query psy2212
Match_columns 267
No_of_seqs 198 out of 1574
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:04:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 4.7E-21 1.6E-25 154.2 11.1 112 3-115 25-151 (154)
2 3qio_A GAG-POL polyprotein; RN 99.8 1.5E-20 5.2E-25 150.6 12.4 106 4-115 30-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.8 4.1E-21 1.4E-25 153.1 7.9 108 4-115 22-144 (146)
4 3p1g_A Xenotropic murine leuke 99.8 3E-20 1E-24 151.0 9.8 109 3-115 40-156 (165)
5 1jl1_A Ribonuclease HI; RNAse 99.8 5E-20 1.7E-24 148.4 8.4 109 4-116 22-144 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.8 6.5E-20 2.2E-24 148.2 8.8 108 4-115 24-145 (158)
7 2kq2_A Ribonuclease H-related 99.8 1.7E-20 5.7E-25 149.9 4.1 109 4-116 22-138 (147)
8 1ril_A Ribonuclease H; hydrola 99.8 1.2E-19 4.1E-24 147.8 5.1 93 21-116 44-149 (166)
9 2lsn_A Reverse transcriptase; 99.7 4.9E-18 1.7E-22 137.9 7.6 93 21-114 52-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.7 3.4E-17 1.2E-21 129.0 10.9 108 3-115 20-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.7 3.8E-17 1.3E-21 128.4 8.4 90 21-114 41-136 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 2.7E-16 9.1E-21 150.6 13.6 85 21-113 469-555 (555)
13 2zd1_A Reverse transcriptase/r 99.7 1.7E-16 5.7E-21 152.1 11.5 100 4-112 455-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.7 2E-16 6.8E-21 126.2 9.6 106 5-115 22-134 (149)
15 1zbf_A Ribonuclease H-related 99.0 2.4E-10 8.1E-15 90.2 4.1 100 4-106 27-138 (142)
16 4htu_A Ribonuclease H, RNAse H 98.8 9.4E-09 3.2E-13 79.8 6.5 44 21-65 41-84 (134)
17 2nx8_A TRNA-specific adenosine 79.6 2.3 8E-05 34.0 4.8 51 2-52 36-90 (179)
18 1wkq_A Guanine deaminase; doma 79.6 2.4 8.1E-05 33.4 4.7 51 2-52 32-86 (164)
19 2b3j_A TRNA adenosine deaminas 77.2 4.7 0.00016 31.4 5.8 51 2-52 27-81 (159)
20 2fr5_A Cytidine deaminase; tet 77.1 5.7 0.00019 30.6 6.1 53 2-55 36-92 (146)
21 2a8n_A Cytidine and deoxycytid 76.8 2.6 9E-05 32.3 4.2 51 2-52 24-78 (144)
22 1wwr_A TRNA adenosine deaminas 75.5 3.6 0.00012 32.6 4.7 51 2-52 43-97 (171)
23 1uwz_A Cytidine deaminase; CDD 72.6 10 0.00034 28.7 6.5 53 2-55 24-80 (136)
24 1z3a_A TRNA-specific adenosine 71.5 4.1 0.00014 32.1 4.1 50 3-52 30-83 (168)
25 3dh1_A TRNA-specific adenosine 68.9 7.6 0.00026 31.2 5.3 40 2-41 46-89 (189)
26 1r5t_A Cytidine deaminase; zin 67.7 15 0.00052 27.9 6.6 54 2-55 32-89 (142)
27 2g84_A Cytidine and deoxycytid 66.0 16 0.00055 29.4 6.8 39 2-40 48-92 (197)
28 2z3g_A Blasticidin-S deaminase 65.2 12 0.0004 28.1 5.4 51 3-54 28-80 (130)
29 2d30_A Cytidine deaminase; pur 63.7 11 0.00039 28.7 5.1 53 2-55 33-89 (141)
30 3dmo_A Cytidine deaminase; str 57.8 19 0.00066 27.3 5.4 53 3-55 33-90 (138)
31 3mpz_A Cytidine deaminase; ssg 54.8 15 0.00052 28.4 4.4 51 3-54 47-101 (150)
32 1rw3_A POL polyprotein; RNA an 54.3 4.5 0.00015 36.9 1.6 42 22-64 386-428 (455)
33 3r2n_A Cytidine deaminase; str 51.7 22 0.00077 26.9 4.9 51 3-54 32-86 (138)
34 2hvw_A Deoxycytidylate deamina 47.3 31 0.0011 27.4 5.3 49 2-52 61-128 (184)
35 3oj6_A Blasticidin-S deaminase 43.4 38 0.0013 26.3 5.1 50 3-53 52-103 (158)
36 2hxv_A Diaminohydroxyphosphori 43.2 37 0.0013 29.9 5.7 37 2-38 36-72 (360)
37 3alr_A Nanos protein; zinc-fin 42.8 11 0.00038 27.1 1.8 27 198-224 72-100 (106)
38 1vq2_A DCMP deaminase, deoxycy 34.1 72 0.0025 25.2 5.6 18 2-19 22-39 (193)
39 2g6v_A Riboflavin biosynthesis 33.2 40 0.0014 30.2 4.4 37 3-39 53-89 (402)
40 2b3z_A Riboflavin biosynthesis 32.0 38 0.0013 30.0 3.9 36 3-38 37-72 (373)
41 3b8f_A Putative blasticidin S 29.8 80 0.0027 23.8 4.9 51 3-54 24-78 (142)
42 1ea9_C Cyclomaltodextrinase; h 28.9 48 0.0017 31.0 4.3 69 28-102 169-249 (583)
43 1ctt_A Cytidine deaminase; hyd 27.5 82 0.0028 27.0 5.1 55 1-55 208-267 (294)
44 1p6o_A Cytosine deaminase; hyd 24.9 70 0.0024 24.6 3.9 37 2-38 34-76 (161)
45 1ht6_A AMY1, alpha-amylase iso 24.1 43 0.0015 29.7 2.8 69 30-101 20-98 (405)
46 2w4l_A DCMP deaminse, deoxycyt 21.5 55 0.0019 25.7 2.7 36 2-37 32-91 (178)
47 1lwj_A 4-alpha-glucanotransfer 20.1 54 0.0018 29.3 2.6 70 28-102 20-100 (441)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.85 E-value=4.7e-21 Score=154.21 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=87.0
Q ss_pred ceEEEEEeCC---ceEEEecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC---------CC--C
Q psy2212 3 TSCAYIIDKT---SIYSFVLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPS---------NI--N 68 (267)
Q Consensus 3 ~~g~ai~~~~---~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~---------~~--~ 68 (267)
++|++|+-.+ ..++..+++.+||+.|||.|++.||+.+...+..+|.|+|||++|++.|.++. .. .
T Consensus 25 ~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~ 104 (154)
T 2qkb_A 25 RAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGK 104 (154)
T ss_dssp EEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSS
T ss_pred cEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCC
Confidence 3787777432 24566777779999999999999999998877899999999999999998742 11 1
Q ss_pred hH-HHHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 69 PI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 69 ~~-~~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
++ ...++..+..+.. +..|.|.|||||+|++||+.||+||++|+..
T Consensus 105 ~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 105 EVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp BCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 21 1344444444433 4579999999999999999999999998765
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.84 E-value=1.5e-20 Score=150.62 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=77.7
Q ss_pred eEEEEEeCCceEEEecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC-----------CCChHH-
Q psy2212 4 SCAYIIDKTSIYSFVLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPS-----------NINPIV- 71 (267)
Q Consensus 4 ~g~ai~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~-----------~~~~~~- 71 (267)
+|+++.++ ......+ ..+||+.||+.|++.||+.+ ..++.|+|||++|+++|++|. ...++.
T Consensus 30 ~G~v~~~~-~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n 103 (150)
T 3qio_A 30 AGYVTNRG-RQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKN 103 (150)
T ss_dssp EEEEETTS-CEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHHHHHHHCC------------C
T ss_pred EEEEEEcC-CEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCccccc
Confidence 34433333 3333444 47899999999999999985 379999999999999998752 111221
Q ss_pred HHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 72 SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 72 ~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
.++++.+..+...+..|.|.|||||+|++|||.||+||++|+..
T Consensus 104 ~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 104 VDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 33444443333567899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.84 E-value=4.1e-21 Score=153.13 Aligned_cols=108 Identities=19% Similarity=0.089 Sum_probs=77.1
Q ss_pred eEEEEEeCCceEEE--ecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC-CC-----------CCCh
Q psy2212 4 SCAYIIDKTSIYSF--VLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSN-PS-----------NINP 69 (267)
Q Consensus 4 ~g~ai~~~~~~~~~--~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~-~~-----------~~~~ 69 (267)
+|+++.+++....+ .+ ..+||+.|||.|++.||+.+.+ ..++.|+|||++|++.|++ |. ...+
T Consensus 22 ~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~ 98 (146)
T 3h08_A 22 WGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKP 98 (146)
T ss_dssp EEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CC
T ss_pred EEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCC
Confidence 45555565533332 33 4689999999999999999975 5799999999999999987 21 1111
Q ss_pred H-HHHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 70 I-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 70 ~-~~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
+ ...++..+..+... ..|.|.|||||+|+++||.||+||++|+..
T Consensus 99 v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 99 VENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp CTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 1 12333333334333 469999999999999999999999998754
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.82 E-value=3e-20 Score=151.01 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=81.0
Q ss_pred ceEEEEEeCCceEEE-ecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCCChHH-HHHHHhH-H
Q psy2212 3 TSCAYIIDKTSIYSF-VLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNINPIV-SLIHSCW-S 79 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~-~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~~~~~-~~i~~~~-~ 79 (267)
.+|++|+.++....+ .++..+||+.||+.|++.||+.+ ...++.|+|||++|+++|-......++. .+++..+ .
T Consensus 40 g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~ 116 (165)
T 3p1g_A 40 RAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLK 116 (165)
T ss_dssp EEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHH
Confidence 356666666554433 45678899999999999999998 3689999999999999993212222221 2322222 3
Q ss_pred HHHhcCCeEEEEEecCCCC-----CchhhHHhHHhcCCCCC
Q psy2212 80 DLLCCGKQLAFLWCPSHTG-----IQGNEAVDRAARNPSAS 115 (267)
Q Consensus 80 ~l~~~~~~v~~~WvpgH~g-----~~gNe~AD~lAk~a~~~ 115 (267)
.+ ..+..|.|.|||||+| ++|||.||+||++|+..
T Consensus 117 ~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 117 AL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp HT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 23 3678999999999999 99999999999999876
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.81 E-value=5e-20 Score=148.42 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=80.4
Q ss_pred eEEEEEeCCceEEE--ecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCC--------C-CC--ChH
Q psy2212 4 SCAYIIDKTSIYSF--VLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNP--------S-NI--NPI 70 (267)
Q Consensus 4 ~g~ai~~~~~~~~~--~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~--------~-~~--~~~ 70 (267)
+|+++.+.+....+ .+ +.+||+.|||.|++.||+.+.. ..++.|+|||++|++.|++| + .. .++
T Consensus 22 ~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v 98 (155)
T 1jl1_A 22 YGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPV 98 (155)
T ss_dssp EEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBC
T ss_pred EEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCcc
Confidence 34555555433322 33 4679999999999999999976 37999999999999999973 1 11 122
Q ss_pred H-HHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCCC
Q psy2212 71 V-SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASL 116 (267)
Q Consensus 71 ~-~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 116 (267)
. ..++..+..+.. ...|.|.|||||+|++||+.||+||++|+...
T Consensus 99 ~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 99 KNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp TTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 334444444433 46899999999999999999999999998763
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.80 E-value=6.5e-20 Score=148.20 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=79.2
Q ss_pred eEEEEEeCCceEEE--ecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC--------CCCC---ChH
Q psy2212 4 SCAYIIDKTSIYSF--VLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSN--------PSNI---NPI 70 (267)
Q Consensus 4 ~g~ai~~~~~~~~~--~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~--------~~~~---~~~ 70 (267)
+|+++.+++....+ .+ +.+||+.|||.|++.||+.+.. ..+|.|+|||++|++.|.+ .+.. .++
T Consensus 24 ~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v 100 (158)
T 2e4l_A 24 YGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPV 100 (158)
T ss_dssp EEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBC
T ss_pred EEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcc
Confidence 34444455433322 33 3579999999999999999865 3899999999999999998 2211 122
Q ss_pred H-HHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 71 V-SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 71 ~-~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
. ..++..+..+.. ...|.|.|||||+|++||+.||+||++|+..
T Consensus 101 ~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 101 KNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp TTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 1 234444444433 3689999999999999999999999999875
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.80 E-value=1.7e-20 Score=149.94 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=83.2
Q ss_pred eEEEEEeCCceEEE---ec--CC--CCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC-ChHHHHHH
Q psy2212 4 SCAYIIDKTSIYSF---VL--NN--VNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNI-NPIVSLIH 75 (267)
Q Consensus 4 ~g~ai~~~~~~~~~---~l--~~--~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~-~~~~~~i~ 75 (267)
+|+++.+.+....+ .+ +. .+||+.||+.|++.||+.+...+. +|.|+|||+.+.+.+.+.+.. .+....+.
T Consensus 22 ~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~ 100 (147)
T 2kq2_A 22 WAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKAKNEFTQAYA 100 (147)
T ss_dssp EEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHHHHHHH
T ss_pred EEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCccCCcchHHHH
Confidence 45555555543332 22 22 369999999999999999877666 999999999998877765433 34455666
Q ss_pred HhHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCCC
Q psy2212 76 SCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASL 116 (267)
Q Consensus 76 ~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 116 (267)
+++..|.. .|.|.|||||+|++|||.||+||++|+...
T Consensus 101 ~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 101 KLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 66666633 799999999999999999999999998764
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.77 E-value=1.2e-19 Score=147.77 Aligned_cols=93 Identities=25% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcC----------CCCC--ChHH-HHHHHhHHHHHhcCCe
Q psy2212 21 NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSN----------PSNI--NPIV-SLIHSCWSDLLCCGKQ 87 (267)
Q Consensus 21 ~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~----------~~~~--~~~~-~~i~~~~~~l~~~~~~ 87 (267)
..+||+.|||.|++.||+.+... .+|.|+|||++|++.|.+ |... .++. ..++..+..+.. ...
T Consensus 44 ~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~ 120 (166)
T 1ril_A 44 ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHR 120 (166)
T ss_dssp EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSE
T ss_pred CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCe
Confidence 46799999999999999998753 589999999999999998 2211 1221 234444444433 358
Q ss_pred EEEEEecCCCCCchhhHHhHHhcCCCCCC
Q psy2212 88 LAFLWCPSHTGIQGNEAVDRAARNPSASL 116 (267)
Q Consensus 88 v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 116 (267)
|.|.|||||+|+++|+.||+||++|+...
T Consensus 121 v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 121 VRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp EECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred EEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.73 E-value=4.9e-18 Score=137.86 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=70.8
Q ss_pred CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC---------C--CChHH-HHHHHhHHHHHhcCCeE
Q psy2212 21 NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPS---------N--INPIV-SLIHSCWSDLLCCGKQL 88 (267)
Q Consensus 21 ~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~---------~--~~~~~-~~i~~~~~~l~~~~~~v 88 (267)
+..+++.||+.|+..||+.+...+ .+|.|+|||+||+++|+.|. . ..|+. .+++..+..+......|
T Consensus 52 nn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v 130 (165)
T 2lsn_A 52 GNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDI 130 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCE
Confidence 567889999999999998887643 57999999999999997531 1 12321 34444454444556789
Q ss_pred EEEEecCCCCC------chhhHHhHHhcCCCC
Q psy2212 89 AFLWCPSHTGI------QGNEAVDRAARNPSA 114 (267)
Q Consensus 89 ~~~WvpgH~g~------~gNe~AD~lAk~a~~ 114 (267)
.|.|||||+|+ +|||.||+||++|+.
T Consensus 131 ~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 131 TIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp EEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 99999999994 689999999998763
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.72 E-value=3.4e-17 Score=129.02 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred ceEEEEEeCC--c---eEEEecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC-CCChHHHHHHH
Q psy2212 3 TSCAYIIDKT--S---IYSFVLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPS-NINPIVSLIHS 76 (267)
Q Consensus 3 ~~g~ai~~~~--~---~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~-~~~~~~~~i~~ 76 (267)
.+|+++.+.+ . .....+ +.+||+.||+.|++.||+.+...+..++.|+|||+++++.+++.+ ..++.+..+++
T Consensus 20 g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~ 98 (141)
T 3hst_B 20 GYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYV 98 (141)
T ss_dssp EEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHH
T ss_pred EEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHH
Confidence 3455566653 2 222233 478999999999999999999888899999999999999999854 44555556666
Q ss_pred hHHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 77 CWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 77 ~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
.+..+...+..|.|.|||+ ++|+.||+||++|+..
T Consensus 99 ~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 99 QAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 6666767788999999995 7999999999998764
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.69 E-value=3.8e-17 Score=128.35 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCChhHHHHHHHHHHHHHhhhCCCC----eEEEEeccHHHHHHhcCCCC-CChHHHHHHHhHHHH-HhcCCeEEEEEec
Q psy2212 21 NVNSVFTSELIAVLLCLKHLKFLPKE----KFVIISDSKSTLLALSNPSN-INPIVSLIHSCWSDL-LCCGKQLAFLWCP 94 (267)
Q Consensus 21 ~~~t~~~AEl~Ai~~AL~~~~~~~~~----~i~I~sDS~~ai~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~Wvp 94 (267)
+.+||+.||+.|++.||+.+...+.. ++.|+|||+++++.+++++. .++-+..++..+..+ ...+..|.|.|||
T Consensus 41 ~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~ 120 (140)
T 3u3g_D 41 GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP 120 (140)
T ss_dssp EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 35799999999999999999887666 99999999999999998663 344344444455555 5666789999999
Q ss_pred CCCCCchhhHHhHHhcCCCC
Q psy2212 95 SHTGIQGNEAVDRAARNPSA 114 (267)
Q Consensus 95 gH~g~~gNe~AD~lAk~a~~ 114 (267)
+ ++|+.||+||++|+.
T Consensus 121 ~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 121 R----EKNARADELVNEAID 136 (140)
T ss_dssp G----GGGHHHHHHHHHHHH
T ss_pred c----hhhHHHHHHHHHHHH
Confidence 4 799999999998864
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.68 E-value=2.7e-16 Score=150.58 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC--ChHHHHHHHhHHHHHhcCCeEEEEEecCCCC
Q psy2212 21 NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNI--NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTG 98 (267)
Q Consensus 21 ~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~--~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~g 98 (267)
..+||+.||+.|++.||+. +..++.|+|||++|++.+++|... .++.+.+.+.+ ..+..|.|.|||||+|
T Consensus 469 ~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~----~~~~~v~~~wV~~H~g 540 (555)
T 1mu2_A 469 EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEM----IKKEAIYVAWVPAHKG 540 (555)
T ss_dssp SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHH----HHCSEEEEEECCSSSC
T ss_pred CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHh----ccCCcEEEEEEECCCC
Confidence 4689999999999999998 468999999999999999987633 46666554433 3467899999999999
Q ss_pred CchhhHHhHHhcCCC
Q psy2212 99 IQGNEAVDRAARNPS 113 (267)
Q Consensus 99 ~~gNe~AD~lAk~a~ 113 (267)
++|||.||+||++|+
T Consensus 541 ~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 541 IGGNQEVDHLVSQGI 555 (555)
T ss_dssp CTTHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHhhC
Confidence 999999999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.67 E-value=1.7e-16 Score=152.05 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=75.6
Q ss_pred eEEEEEe-CCceEEEecCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC--ChHHHHHHHhHHH
Q psy2212 4 SCAYIID-KTSIYSFVLNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNI--NPIVSLIHSCWSD 80 (267)
Q Consensus 4 ~g~ai~~-~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~--~~~~~~i~~~~~~ 80 (267)
+|++++. .+....+.+ ..+||+.||+.|++.||+.+ ..++.|+|||++|++.|+++... .++.+.+.+.+
T Consensus 455 ~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l-- 527 (557)
T 2zd1_A 455 GKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL-- 527 (557)
T ss_dssp EEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHH--
T ss_pred eEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHH--
Confidence 4444443 233333343 47899999999999999998 57999999999999999998755 46666554433
Q ss_pred HHhcCCeEEEEEecCCCCCchhhHHhHHhcCC
Q psy2212 81 LLCCGKQLAFLWCPSHTGIQGNEAVDRAARNP 112 (267)
Q Consensus 81 l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a 112 (267)
.....|.|.|||||+|++|||.||+||++|
T Consensus 528 --~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 528 --IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp --HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred --hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 234689999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.67 E-value=2e-16 Score=126.19 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=80.4
Q ss_pred EEEEEeCCceE-EE--ecC---CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC-ChHHHHHHHh
Q psy2212 5 CAYIIDKTSIY-SF--VLN---NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNI-NPIVSLIHSC 77 (267)
Q Consensus 5 g~ai~~~~~~~-~~--~l~---~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~-~~~~~~i~~~ 77 (267)
|+++.+++... .+ .++ ..+||+.||+.|++.||+.+...+..++.|+|||+++++.+++++.. ++....+++.
T Consensus 22 G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~ 101 (149)
T 2ehg_A 22 GFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEK 101 (149)
T ss_dssp EEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHH
T ss_pred EEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHH
Confidence 55666644432 22 223 37899999999999999999987788999999999999999997543 3334444444
Q ss_pred HHHHHhcCCeEEEEEecCCCCCchhhHHhHHhcCCCCC
Q psy2212 78 WSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 115 (267)
Q Consensus 78 ~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 115 (267)
+..+.... .|.|.|||+| +|+.||+||++|+..
T Consensus 102 i~~l~~~~-~v~~~~V~~~----~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 102 AIELKKKL-NATLIWVPRE----ENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHHHHHH-TCEEEECCGG----GCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CEEEEEcCCc----ccHHHHHHHHHHHHh
Confidence 44454444 4999999984 999999999998865
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.99 E-value=2.4e-10 Score=90.18 Aligned_cols=100 Identities=15% Similarity=0.013 Sum_probs=67.3
Q ss_pred eEEEEEe--CCceEEEecC-CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCCCC---------ChHH
Q psy2212 4 SCAYIID--KTSIYSFVLN-NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPSNI---------NPIV 71 (267)
Q Consensus 4 ~g~ai~~--~~~~~~~~l~-~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~~~---------~~~~ 71 (267)
+|++++. .+.......+ +.+||+.||+.|++.||+.+.+.+. ++.|+|||++|++.+.+.+.. .++.
T Consensus 27 ~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw 105 (142)
T 1zbf_A 27 VEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIW 105 (142)
T ss_dssp EEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHH
T ss_pred eEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHH
Confidence 4555553 3333333222 3579999999999999999998766 999999999999999986522 1233
Q ss_pred HHHHHhHHHHHhcCCeEEEEEecCCCCCchhhHHh
Q psy2212 72 SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVD 106 (267)
Q Consensus 72 ~~i~~~~~~l~~~~~~v~~~WvpgH~g~~gNe~AD 106 (267)
+.|..+...+... .+....|+-|++.-||.-||
T Consensus 106 ~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 106 KLVDEAEEWLNTH--TYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTC
T ss_pred HHHHHHHHHHhhC--CCceeEEEeccCccCcCccc
Confidence 4443333333333 34444566688888888888
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.78 E-value=9.4e-09 Score=79.83 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHhcCCC
Q psy2212 21 NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSKSTLLALSNPS 65 (267)
Q Consensus 21 ~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~~ai~~l~~~~ 65 (267)
+.+||+.||++|++.||+.+.+.+.. +.|+|||++|++.|.++.
T Consensus 41 ~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~~ 84 (134)
T 4htu_A 41 PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDKK 84 (134)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcCC
Confidence 37899999999999999999885544 899999999999998753
No 17
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=79.59 E-value=2.3 Score=33.97 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=35.5
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
..+|++|++++..+....... .....||..||..|.+..........++|+
T Consensus 36 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 36 IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 368999998777665554421 124579999999998876544456677777
No 18
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=79.57 E-value=2.4 Score=33.42 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=35.4
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
..+|++|+++++.+....... .-...||..||..|.+.+........++|+
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 468999998777665554421 124569999999998876444456677777
No 19
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=77.24 E-value=4.7 Score=31.43 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=35.5
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
-.+|++|++++..+....... .-...||..||..|.+..........++|+
T Consensus 27 ~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 27 VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 368999998766665544321 234579999999998875444456777776
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=77.09 E-value=5.7 Score=30.61 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=34.6
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIISDSK 55 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~ 55 (267)
-++|+|++..+..+.....-. .-...||..||..|... -......+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 379999996544333333311 12356999999999975 333457788998753
No 21
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=76.81 E-value=2.6 Score=32.25 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=33.7
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
-.+|++|+++++.+....... .-...||..||..|.+..........++|+
T Consensus 24 ~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 24 VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 368999998666665554421 124569999999998765433345556665
No 22
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=75.54 E-value=3.6 Score=32.60 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=34.9
Q ss_pred CceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
-.+|++|++++..+....... .....||..||..|.+..........++|+
T Consensus 43 ~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 43 VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 368999998766665544321 123569999999998875444456677776
No 23
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=72.62 E-value=10 Score=28.75 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.4
Q ss_pred CceEEEEEeCC-ceEEEe-cC--CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy2212 2 NTSCAYIIDKT-SIYSFV-LN--NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSK 55 (267)
Q Consensus 2 ~~~g~ai~~~~-~~~~~~-l~--~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~ 55 (267)
-++|+|++..+ ..+... .. ...-...||..||..|... -......+.|++|+.
T Consensus 24 ~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 24 FQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 36999999754 444322 22 1122467999999999876 334567888888753
No 24
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=71.47 E-value=4.1 Score=32.12 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=33.4
Q ss_pred ceEEEEEeCCceEEEecCCC----CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 3 TSCAYIIDKTSIYSFVLNNV----NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~~~----~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
.+|++|++++..+....... .....||..||..|.+..........++|+
T Consensus 30 pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 68999998777665554321 123579999999998876443344556665
No 25
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=68.85 E-value=7.6 Score=31.23 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=29.5
Q ss_pred CceEEEEEeCCceEEEecCC----CCChhHHHHHHHHHHHHHhh
Q psy2212 2 NTSCAYIIDKTSIYSFVLNN----VNSVFTSELIAVLLCLKHLK 41 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~----~~t~~~AEl~Ai~~AL~~~~ 41 (267)
..+|++|+++++.+...... ..-...||..||..|.+.+.
T Consensus 46 ~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 46 VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 36899999987777666542 33345799999999987653
No 26
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=67.67 E-value=15 Score=27.93 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=35.1
Q ss_pred CceEEEEEeCCceEEEecC----CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy2212 2 NTSCAYIIDKTSIYSFVLN----NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSK 55 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~----~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~ 55 (267)
.++|+|+...+..+..... .......||-.||..|...-.......+.|++|+.
T Consensus 32 f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 32 FRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp CCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred CCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 4799999975543333322 12234679999999998653221267889998763
No 27
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=65.98 E-value=16 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=27.9
Q ss_pred CceEEEEEe-C-CceEEEecC----CCCChhHHHHHHHHHHHHHh
Q psy2212 2 NTSCAYIID-K-TSIYSFVLN----NVNSVFTSELIAVLLCLKHL 40 (267)
Q Consensus 2 ~~~g~ai~~-~-~~~~~~~l~----~~~t~~~AEl~Ai~~AL~~~ 40 (267)
+.+|++|++ + ++.+..... ...-...||..||..|-+.+
T Consensus 48 ~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 48 GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 578999998 4 566655544 22335679999999988765
No 28
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=65.19 E-value=12 Score=28.10 Aligned_cols=51 Identities=8% Similarity=-0.063 Sum_probs=33.4
Q ss_pred ceEEEEEeCCceEEEe--cCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy2212 3 TSCAYIIDKTSIYSFV--LNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDS 54 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~--l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS 54 (267)
++|+|+...+..+... .........||..||..|... -....+.+.|++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 6899999655433233 222334567999999999874 22345677888875
No 29
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=63.65 E-value=11 Score=28.71 Aligned_cols=53 Identities=13% Similarity=-0.015 Sum_probs=35.2
Q ss_pred CceEEEEEeCCceEEEecC----CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy2212 2 NTSCAYIIDKTSIYSFVLN----NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDSK 55 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~----~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS~ 55 (267)
-++|+|++..+..+..... .+.....||-.||..|...- ......|.|.+|..
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 3799999976544444332 22234679999999998652 23457788888864
No 30
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=57.76 E-value=19 Score=27.32 Aligned_cols=53 Identities=9% Similarity=-0.046 Sum_probs=35.2
Q ss_pred ceEEEEEeCCceEEEecCC----CCChhHHHHHHHHHHHHHhhh-CCCCeEEEEeccH
Q psy2212 3 TSCAYIIDKTSIYSFVLNN----VNSVFTSELIAVLLCLKHLKF-LPKEKFVIISDSK 55 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~~----~~t~~~AEl~Ai~~AL~~~~~-~~~~~i~I~sDS~ 55 (267)
++|+|+...+..+..+..- +.....||-.||..|+..-.. ...+.|.|.+|+.
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~~ 90 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETH 90 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCCC
Confidence 6899999877655554331 223457999999999864211 1356788888863
No 31
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=54.84 E-value=15 Score=28.35 Aligned_cols=51 Identities=8% Similarity=-0.209 Sum_probs=33.7
Q ss_pred ceEEEEEeCCceEEEecC----CCCChhHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy2212 3 TSCAYIIDKTSIYSFVLN----NVNSVFTSELIAVLLCLKHLKFLPKEKFVIISDS 54 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~----~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS 54 (267)
++|+|+...+..+..+.. .+.....||-.||..|+..- ......|.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 689999987665554433 12234579999999998742 2245667777664
No 32
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=54.31 E-value=4.5 Score=36.90 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHHHHHhhh-CCCCeEEEEeccHHHHHHhcCC
Q psy2212 22 VNSVFTSELIAVLLCLKHLKF-LPKEKFVIISDSKSTLLALSNP 64 (267)
Q Consensus 22 ~~t~~~AEl~Ai~~AL~~~~~-~~~~~i~I~sDS~~ai~~l~~~ 64 (267)
.-+.+..|++||..|++.+.. ..+..+.|+||+. ++..+.+.
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 346788999999999998865 3457899999996 65555543
No 33
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=51.74 E-value=22 Score=26.92 Aligned_cols=51 Identities=4% Similarity=-0.233 Sum_probs=32.8
Q ss_pred ceEEEEEeCCceEEEecCC----CCChhHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy2212 3 TSCAYIIDKTSIYSFVLNN----VNSVFTSELIAVLLCLKHLKFLPKEKFVIISDS 54 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~~----~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS 54 (267)
++|+|++..+..+.....- +.....||-.||..|...- ......+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 6899999776544444331 1224569999999998653 2234566777663
No 34
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=47.30 E-value=31 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=31.9
Q ss_pred CceEEEEEeCCceEEEecCCC-------------------CChhHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNV-------------------NSVFTSELIAVLLCLKHLKFLPKEKFVIIS 52 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~-------------------~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~s 52 (267)
-.+|++|++++..+....... .-...||..||..|.+.- ......++|+
T Consensus 61 ~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g--~~l~g~tlYv 128 (184)
T 2hvw_A 61 AYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG--ISANNTEIYV 128 (184)
T ss_dssp CCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT--CCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC--CCceeEEEEE
Confidence 468999998776665443311 113579999999987642 2345677776
No 35
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=43.41 E-value=38 Score=26.29 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=31.5
Q ss_pred ceEEEEEeCCceEEEe--cCCCCChhHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy2212 3 TSCAYIIDKTSIYSFV--LNNVNSVFTSELIAVLLCLKHLKFLPKEKFVIISD 53 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~--l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sD 53 (267)
++|+|+...+..+... ......-..||-.||..|+..-. .....+.+.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs~G~-~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAGA-TKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHHhCC-CceEEEEEEeC
Confidence 6999999876544433 32333445799999999985321 12345566665
No 36
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=43.23 E-value=37 Score=29.92 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=28.4
Q ss_pred CceEEEEEeCCceEEEecCCCCChhHHHHHHHHHHHH
Q psy2212 2 NTSCAYIIDKTSIYSFVLNNVNSVFTSELIAVLLCLK 38 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~ 38 (267)
-.+|++|+.++..+..........-.||..||..|.+
T Consensus 36 ~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~ 72 (360)
T 2hxv_A 36 PPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARK 72 (360)
T ss_dssp CCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHH
T ss_pred CCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHh
Confidence 3689999987777776665444566899999999854
No 37
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=42.80 E-value=11 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCc-ccCCCCCcchhhc-CcccHHhhhcC
Q psy2212 198 STC-GCGEILSVQHILT-CALHGHIRASL 224 (267)
Q Consensus 198 p~C-~Cg~~et~~H~l~-Cp~~~~~R~~l 224 (267)
-.| -||...+-.|.+- ||+.......+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 569 9999999999999 99988665443
No 38
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=34.14 E-value=72 Score=25.24 Aligned_cols=18 Identities=22% Similarity=-0.069 Sum_probs=12.9
Q ss_pred CceEEEEEeCCceEEEec
Q psy2212 2 NTSCAYIIDKTSIYSFVL 19 (267)
Q Consensus 2 ~~~g~ai~~~~~~~~~~l 19 (267)
-.+|++|+..+..++...
T Consensus 22 ~~VGAVIV~dg~Iia~G~ 39 (193)
T 1vq2_A 22 WKVGAVIEKNGRIISTGY 39 (193)
T ss_dssp BCCEEEEEETTEEEEEEE
T ss_pred CCEEEEEEECCEEEEEEe
Confidence 368999997777665543
No 39
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=33.21 E-value=40 Score=30.16 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=28.6
Q ss_pred ceEEEEEeCCceEEEecCCCCChhHHHHHHHHHHHHH
Q psy2212 3 TSCAYIIDKTSIYSFVLNNVNSVFTSELIAVLLCLKH 39 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~ 39 (267)
.+|++|++.++............-.||..||..|-+.
T Consensus 53 ~vGaviv~~g~ii~~g~n~~~g~~HAE~~Ai~~a~~~ 89 (402)
T 2g6v_A 53 NVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 89 (402)
T ss_dssp CCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGG
T ss_pred CEEEEEEECCEEEEEEeCCCCCccHHHHHHHHHhhHh
Confidence 6899999977777776655555678999999988544
No 40
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=31.96 E-value=38 Score=29.98 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=27.8
Q ss_pred ceEEEEEeCCceEEEecCCCCChhHHHHHHHHHHHH
Q psy2212 3 TSCAYIIDKTSIYSFVLNNVNSVFTSELIAVLLCLK 38 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~ 38 (267)
.+|++|++++.............-.||..||..|-+
T Consensus 37 ~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~ 72 (373)
T 2b3z_A 37 LVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 72 (373)
T ss_dssp CCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHHGG
T ss_pred cEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHhhH
Confidence 589999987777776665445567899999998854
No 41
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=29.83 E-value=80 Score=23.77 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=31.0
Q ss_pred ceEEEEEeCCceEEEecC-CC---CChhHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy2212 3 TSCAYIIDKTSIYSFVLN-NV---NSVFTSELIAVLLCLKHLKFLPKEKFVIISDS 54 (267)
Q Consensus 3 ~~g~ai~~~~~~~~~~l~-~~---~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~sDS 54 (267)
++|+|++..+..+..... .. .....||..||..|...- ......+.|.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEecC
Confidence 689999976543334433 11 234679999999998742 1123455666654
No 42
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=28.94 E-value=48 Score=31.02 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCC-CCC------C---hHHHHHHHhHHHHHhcCCeEEEEEecC
Q psy2212 28 SELIAVLLCLKHLKFLPKEKFVII--SDSKSTLLALSNP-SNI------N---PIVSLIHSCWSDLLCCGKQLAFLWCPS 95 (267)
Q Consensus 28 AEl~Ai~~AL~~~~~~~~~~i~I~--sDS~~ai~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~v~~~Wvpg 95 (267)
+-+.+|..-|..+++.+...|.+. .+|. .++ +.. . ....++..+++.+..+|..|.+-|||.
T Consensus 169 Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~------~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 242 (583)
T 1ea9_C 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKAT------TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFN 242 (583)
T ss_dssp CCHHHHHHTHHHHHHHTCSEEEECCCSSCS------SSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCS
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCccCC------CCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 347788888999988887777654 2221 111 111 1 125677788888889999999999999
Q ss_pred CCCCchh
Q psy2212 96 HTGIQGN 102 (267)
Q Consensus 96 H~g~~gN 102 (267)
|++....
T Consensus 243 H~~~~~~ 249 (583)
T 1ea9_C 243 HSGRTFP 249 (583)
T ss_dssp BCCTTTH
T ss_pred cCCCccH
Confidence 9997544
No 43
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=27.48 E-value=82 Score=26.96 Aligned_cols=55 Identities=11% Similarity=-0.111 Sum_probs=35.9
Q ss_pred CCceEEEEEeCCceEEEecC----CCCChhHHHHHHHHHHHHHhhh-CCCCeEEEEeccH
Q psy2212 1 NNTSCAYIIDKTSIYSFVLN----NVNSVFTSELIAVLLCLKHLKF-LPKEKFVIISDSK 55 (267)
Q Consensus 1 ~~~~g~ai~~~~~~~~~~l~----~~~t~~~AEl~Ai~~AL~~~~~-~~~~~i~I~sDS~ 55 (267)
+.++|+|+...+..+..+.. .+.....||-.||..|...-.. ...+.+.+++|..
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~ 267 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKAD 267 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCC
Confidence 35799999976554433322 2334567999999999864211 2356788888763
No 44
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=24.92 E-value=70 Score=24.61 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=24.0
Q ss_pred CceEEEEE--eCCceEEEecCC----CCChhHHHHHHHHHHHH
Q psy2212 2 NTSCAYII--DKTSIYSFVLNN----VNSVFTSELIAVLLCLK 38 (267)
Q Consensus 2 ~~~g~ai~--~~~~~~~~~l~~----~~t~~~AEl~Ai~~AL~ 38 (267)
-.+|++|+ ..+..+...... ..-...||..||..|.+
T Consensus 34 ~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 34 VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp CCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 36899999 345555444432 11235799999998864
No 45
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=24.10 E-value=43 Score=29.69 Aligned_cols=69 Identities=10% Similarity=-0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhCCCCeEEEE--ecc----HHHH---HHhc-CCCCCChHHHHHHHhHHHHHhcCCeEEEEEecCCCCC
Q psy2212 30 LIAVLLCLKHLKFLPKEKFVII--SDS----KSTL---LALS-NPSNINPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGI 99 (267)
Q Consensus 30 l~Ai~~AL~~~~~~~~~~i~I~--sDS----~~ai---~~l~-~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WvpgH~g~ 99 (267)
+.+|..-|..+++.+...|.+- .+| -|.. ..+. ... ....++.++++.+..+|..|.+-+|+.|++.
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~---Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 96 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKY---GNAAELKSLIGALHGKGVQAIADIVINHRCA 96 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTT---CCHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccC---CCHHHHHHHHHHHHHCCCEEEEEECcCcccC
Confidence 6778888888888877777653 111 1110 0111 111 1246677778888899999999999999986
Q ss_pred ch
Q psy2212 100 QG 101 (267)
Q Consensus 100 ~g 101 (267)
..
T Consensus 97 ~~ 98 (405)
T 1ht6_A 97 DY 98 (405)
T ss_dssp SE
T ss_pred CC
Confidence 53
No 46
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=21.55 E-value=55 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceEEEEEe-CCceEEEecCCC---------------CC--------hhHHHHHHHHHHH
Q psy2212 2 NTSCAYIID-KTSIYSFVLNNV---------------NS--------VFTSELIAVLLCL 37 (267)
Q Consensus 2 ~~~g~ai~~-~~~~~~~~l~~~---------------~t--------~~~AEl~Ai~~AL 37 (267)
-.+|++|++ ++..+....... .+ ...||..||..|.
T Consensus 32 ~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~ 91 (178)
T 2w4l_A 32 SQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN 91 (178)
T ss_dssp CCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC--
T ss_pred CCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc
Confidence 468999995 445554443211 11 2579999998874
No 47
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=20.12 E-value=54 Score=29.31 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEE--eccHHHHHHhcCCCCC------C---hHHHHHHHhHHHHHhcCCeEEEEEecCC
Q psy2212 28 SELIAVLLCLKHLKFLPKEKFVII--SDSKSTLLALSNPSNI------N---PIVSLIHSCWSDLLCCGKQLAFLWCPSH 96 (267)
Q Consensus 28 AEl~Ai~~AL~~~~~~~~~~i~I~--sDS~~ai~~l~~~~~~------~---~~~~~i~~~~~~l~~~~~~v~~~WvpgH 96 (267)
+-+.+|..-|..+++.+...|.+- ..|.+ ..++.. . ....++.++++.+..+|..|.+-+|+.|
T Consensus 20 Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH 94 (441)
T 1lwj_A 20 GDFRGLKNAVSYLKELGIDFVWLMPVFSSIS-----FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHH 94 (441)
T ss_dssp CCHHHHHHTHHHHHHTTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTB
T ss_pred cCHHHHHHhhHHHHHcCCCEEEeCCCcCCCC-----CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 346788888899988877766542 12210 111211 1 1256777788888899999999999999
Q ss_pred CCCchh
Q psy2212 97 TGIQGN 102 (267)
Q Consensus 97 ~g~~gN 102 (267)
++....
T Consensus 95 ~~~~~~ 100 (441)
T 1lwj_A 95 TGFLHT 100 (441)
T ss_dssp CCTTCH
T ss_pred ccCchH
Confidence 997653
Done!