BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2213
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 6 KEKFVIISDSKSTLLALSN-PSNT-NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGN 63
KE I++DS+ L +S+ P+ + +PIV I + L +Q+ W P+H GI GN
Sbjct: 1076 KETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKKEQVYLTWVPAHKGIGGN 1131
Query: 64 EAVDR 68
E +D+
Sbjct: 1132 EKIDK 1136
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 6 KEKFVIISDSKSTL-LALSNPSNTN-PIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGN 63
KE+ I++DS+ L + S P+ ++ PIV I + L +++ W P+H GI GN
Sbjct: 1078 KEQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEELTKKERVYLTWVPAHKGIGGN 1133
Query: 64 EAVDR 68
E +D+
Sbjct: 1134 EKIDK 1138
>sp|Q2GDA1|RNH_NEOSM Ribonuclease H OS=Neorickettsia sennetsu (strain Miyayama) GN=rnhA
PE=3 SV=1
Length = 151
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 43 LCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLPPLKLCSPE 86
+ + +LW +H G NE VDR AR +AS C PE
Sbjct: 111 IAAAHTVRWLWVKAHNGDHYNEIVDRVARKEAASFTN---CEPE 151
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 33.9 bits (76), Expect = 0.67, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 11 IISDSKSTLLAL-SNPSNTN-PIVSLIHSCWSDLLCCGKQLAFL-WCPSHTGIQGNEAVD 67
I++DS+ + L S P+ T+ PIV I L GK+ +L W P+H GI GNE +D
Sbjct: 1091 IVTDSQYVVGILASRPTETDHPIVKEIIE-----LMKGKEKIYLSWLPAHKGIGGNEQID 1145
Query: 68 R 68
+
Sbjct: 1146 K 1146
>sp|Q49622|NADA_MYCLE Quinolinate synthase A OS=Mycobacterium leprae (strain TN) GN=nadA
PE=3 SV=2
Length = 352
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 46 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 77
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|B8ZR90|NADA_MYCLB Quinolinate synthase A OS=Mycobacterium leprae (strain Br4923)
GN=nadA PE=3 SV=1
Length = 352
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 46 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 77
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 7 EKFVIISDSKSTLLALSNPSNTNPIVSLIHSCWSDLL-CCGKQLAFL--WCPSHTGIQGN 63
E+ II+DS+ L N N P L+ W ++L K++A W P H GI GN
Sbjct: 646 EEMNIITDSQYIL----NILNQQP--DLMEGLWQEVLEQMEKKIAIFIDWVPGHKGIPGN 699
Query: 64 EAVDR 68
E VD+
Sbjct: 700 EEVDK 704
>sp|Q640Q5|PAN3_MOUSE PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Mus
musculus GN=Pan3 PE=2 SV=3
Length = 837
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 19 LLALSNPSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLP 78
+L N N NP+ + +DL+ GK + L C S GIQ N ++
Sbjct: 610 VLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACNSLAGIQ--------RENLQKAME 661
Query: 79 PLKLCSPEDFKPFIRKLIKDLWQQSWSSIPNSNKLKS---IKPIIG 121
+ + D K I L+ D N+++S I P+IG
Sbjct: 662 LVTINYSSDLKNLILYLLTD-----------QNRMRSVNDIMPMIG 696
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 11 IISDSKSTLLALS-NPSNTN-PIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDR 68
I++DS+ + L+ P+ ++ P+V I + L+ +Q+ W P+H GI GNE +D+
Sbjct: 1111 IVTDSQYAMGILTAQPTQSDSPLVEQIIA----LMIQKQQIYLQWVPAHKGIGGNEEIDK 1166
>sp|Q58A45|PAN3_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Homo
sapiens GN=PAN3 PE=1 SV=3
Length = 887
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 19 LLALSNPSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLP 78
+L N N NP+ + +DL+ GK + L C S GIQ N ++
Sbjct: 664 VLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACNSLAGIQ--------RENLQKAME 715
Query: 79 PLKLCSPEDFKPFIRKLIKDLWQQSWSSIPNSNKLKS---IKPIIG 121
+ + D K I L+ D N+++S I P+IG
Sbjct: 716 LVTINYSSDLKNLILYLLTD-----------QNRMRSVNDIMPMIG 750
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 8 KFVIISDSKSTLLALSN-----------PSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPS 56
K V+ +DS T+ ++N S +++ D L G + ++ P
Sbjct: 203 KLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQWMHIPG 262
Query: 57 HTGIQGNEAVDRAARN 72
H+G GNE DR AR
Sbjct: 263 HSGFVGNEEADRLARE 278
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 8 KFVIISDSKSTLLALSN-----------PSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPS 56
K V+ +DS T+ ++N S +++ D L G + ++ P
Sbjct: 203 KLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDFMELDELTQGMDIQWMHIPG 262
Query: 57 HTGIQGNEAVDRAARNPS 74
H+G GNE DR AR +
Sbjct: 263 HSGFVGNEEADRLAREGA 280
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 80 LKLCSPEDFK---PFIRKLIKDLWQQSWSSIPNSNKLKSIKPIIGPWPSSDRQNRYEEVV 136
+ LC+ DFK PF++KL W +SSI + L SI P + +E+
Sbjct: 251 IALCAKSDFKEAYPFLKKL----WDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIG 306
Query: 137 ICRMR 141
C +R
Sbjct: 307 FCNLR 311
>sp|Q9YGB5|TRPC_PYRKO Indole-3-glycerol phosphate synthase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=trpC PE=3
SV=2
Length = 227
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 56 SHTGIQGNEAVDRAARNPSASLPPLKLCSPEDFKPFIRKLIK 97
S +GI G E + RA R+ A+L L D + F+RKL++
Sbjct: 183 SESGIAGTEDLKRALRHADAALIGTALMKTPDPEEFLRKLVE 224
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 51 FLWCPSHTGIQGNEAVDRAAR 71
F W P H GI GN+ D AA+
Sbjct: 715 FAWVPGHKGIYGNQLADEAAK 735
>sp|Q2GSJ9|HIR1_CHAGB Protein HIR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) GN=HIR1 PE=3 SV=1
Length = 1080
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 3 SLPKEKFV-------IISDSKSTLLALSNPSNTNPIVSLIHSCWSDLLCCGKQLAFLWCP 55
SLP+ + V SD+ T+L LS PS+ P + + +L K+ A
Sbjct: 515 SLPQSQLVGAKSTKTTQSDTPQTILDLSKPSHGLPRGGI-----AAMLLGNKRKA----- 564
Query: 56 SHTGIQGNEAVDRAARNPSASLPPLKLCSPEDFKP 90
++G E + A R PSA P+ + +PE +P
Sbjct: 565 --AAMEGEEEDELAGRRPSAGPVPILIDTPEGLEP 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,713,982
Number of Sequences: 539616
Number of extensions: 3086826
Number of successful extensions: 6655
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6649
Number of HSP's gapped (non-prelim): 20
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)