Query psy2213
Match_columns 194
No_of_seqs 134 out of 1549
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:06:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.6 3.1E-15 1.1E-19 112.4 7.3 71 6-76 65-147 (150)
2 3h08_A RNH (ribonuclease H); R 99.5 9.7E-15 3.3E-19 108.9 4.8 70 6-76 62-144 (146)
3 2qkb_A Ribonuclease H1, HS-RNA 99.5 3.7E-14 1.3E-18 106.7 6.8 72 5-77 69-152 (154)
4 1jl1_A Ribonuclease HI; RNAse 99.5 4.7E-14 1.6E-18 106.4 5.9 71 6-77 62-144 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.5 6.2E-14 2.1E-18 106.1 6.2 69 7-76 65-145 (158)
6 3p1g_A Xenotropic murine leuke 99.4 9.1E-14 3.1E-18 106.0 4.9 71 6-77 80-157 (165)
7 1ril_A Ribonuclease H; hydrola 99.4 1.1E-13 3.8E-18 105.5 3.6 70 7-77 67-149 (166)
8 2lsn_A Reverse transcriptase; 99.4 3.1E-13 1.1E-17 103.0 4.7 70 6-75 75-162 (165)
9 2kq2_A Ribonuclease H-related 99.4 2.6E-14 8.9E-19 107.0 -2.0 68 8-78 71-139 (147)
10 1mu2_A HIV-2 RT; HIV-2 reverse 99.3 5.1E-12 1.7E-16 112.9 7.0 65 6-74 489-555 (555)
11 2zd1_A Reverse transcriptase/r 99.2 1E-11 3.5E-16 110.9 5.3 64 6-73 492-557 (557)
12 3u3g_D Ribonuclease H, RNAse H 99.1 2.3E-10 8E-15 83.6 6.4 66 6-75 69-136 (140)
13 3hst_B Protein RV2228C/MT2287; 99.1 3.3E-10 1.1E-14 83.2 7.2 68 5-76 65-133 (141)
14 2ehg_A Ribonuclease HI; RNAse 98.9 6.5E-10 2.2E-14 82.7 4.5 66 6-76 68-134 (149)
15 1zbf_A Ribonuclease H-related 94.9 0.0039 1.3E-07 45.7 -0.5 59 8-68 72-139 (142)
16 4htu_A Ribonuclease H, RNAse H 73.5 6.8 0.00023 28.0 5.3 17 8-24 66-82 (134)
17 3alr_A Nanos protein; zinc-fin 50.1 7.2 0.00025 26.5 1.6 25 159-183 72-98 (106)
18 2i0f_A 6,7-dimethyl-8-ribityll 30.7 37 0.0013 24.8 3.0 33 38-72 34-66 (157)
19 2fqc_A Conotoxin PL14A; alpha- 25.4 19 0.00064 17.8 0.4 6 159-164 20-25 (26)
20 2bhu_A Maltooligosyltrehalose 24.9 71 0.0024 28.2 4.3 34 32-65 192-225 (602)
21 1wzl_A Alpha-amylase II; pullu 22.5 69 0.0024 28.0 3.8 32 32-63 219-250 (585)
22 1j0h_A Neopullulanase; beta-al 21.2 1.1E+02 0.0037 26.7 4.8 34 32-65 222-255 (588)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.58 E-value=3.1e-15 Score=112.44 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=52.4
Q ss_pred CCeEEEEeCcHHHHHHHhCC--------CCC---ChHH-HHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCC
Q psy2213 6 KEKFVIISDSKSTLLALSNP--------SNT---NPIV-SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNP 73 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~--------~~~---~~~~-~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a 73 (194)
+.++.|+|||+++++.|.++ +.. .++. .++++.+..+..+...|.|.|||||+|++|||.||+||++|
T Consensus 65 ~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 144 (150)
T 3qio_A 65 GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144 (150)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence 37899999999999999863 111 1221 23444433333567899999999999999999999999999
Q ss_pred CCC
Q psy2213 74 SAS 76 (194)
Q Consensus 74 ~~~ 76 (194)
+..
T Consensus 145 ~~~ 147 (150)
T 3qio_A 145 IRK 147 (150)
T ss_dssp TSC
T ss_pred HHH
Confidence 875
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.51 E-value=9.7e-15 Score=108.90 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=50.3
Q ss_pred CCeEEEEeCcHHHHHHHhCC---------CCC---ChH-HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcC
Q psy2213 6 KEKFVIISDSKSTLLALSNP---------SNT---NPI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARN 72 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~---------~~~---~~~-~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~ 72 (194)
..++.|+|||+++++.|.+. +.. .++ -..+++.+..+.. ...|.|.|||||+|++|||.||+|||+
T Consensus 62 ~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~ 140 (146)
T 3h08_A 62 PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARL 140 (146)
T ss_dssp CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHH
T ss_pred cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHH
Confidence 47899999999999999872 111 111 1234444444433 357999999999999999999999998
Q ss_pred CCCC
Q psy2213 73 PSAS 76 (194)
Q Consensus 73 a~~~ 76 (194)
|+..
T Consensus 141 a~~~ 144 (146)
T 3h08_A 141 AIKE 144 (146)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.49 E-value=3.7e-14 Score=106.71 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=54.3
Q ss_pred CCCeEEEEeCcHHHHHHHhCC--------CCC-C--hH-HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcC
Q psy2213 5 PKEKFVIISDSKSTLLALSNP--------SNT-N--PI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARN 72 (194)
Q Consensus 5 ~~~~~~i~sDs~~al~~l~~~--------~~~-~--~~-~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~ 72 (194)
+..++.|+|||+++++.|.++ +.. + ++ -..+++.+..+. .+..|.|.|||||+|++|||.||+|||+
T Consensus 69 ~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~-~~~~v~~~~V~~H~g~~~N~~AD~LA~~ 147 (154)
T 2qkb_A 69 NINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLT-QGMDIQWMHVPGHSGFIGNEEADRLARE 147 (154)
T ss_dssp TCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHH-TTCEEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred CCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHH-cCCceEEEEccCCCCCHhHHHHHHHHHH
Confidence 357899999999999999862 221 1 11 134444444553 3678999999999999999999999999
Q ss_pred CCCCC
Q psy2213 73 PSASL 77 (194)
Q Consensus 73 a~~~~ 77 (194)
|+..+
T Consensus 148 a~~~~ 152 (154)
T 2qkb_A 148 GAKQS 152 (154)
T ss_dssp HHTCC
T ss_pred HHHhc
Confidence 88753
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.47 E-value=4.7e-14 Score=106.38 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCeEEEEeCcHHHHHHHhC--------CCCC---ChHH-HHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCC
Q psy2213 6 KEKFVIISDSKSTLLALSN--------PSNT---NPIV-SLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNP 73 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~--------~~~~---~~~~-~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a 73 (194)
..++.|+|||+++++.|.+ .+.. .++. ..+++.+..+. .+..|.|.|||||+|++|||.||+||+.|
T Consensus 62 ~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 62 HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHH-ccCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999996 2222 1221 34454555553 35789999999999999999999999999
Q ss_pred CCCC
Q psy2213 74 SASL 77 (194)
Q Consensus 74 ~~~~ 77 (194)
+..+
T Consensus 141 ~~~~ 144 (155)
T 1jl1_A 141 AMNP 144 (155)
T ss_dssp HHSC
T ss_pred Hhcc
Confidence 8764
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.46 E-value=6.2e-14 Score=106.08 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=53.5
Q ss_pred CeEEEEeCcHHHHHHHhC--------CCCCC---hH-HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCCC
Q psy2213 7 EKFVIISDSKSTLLALSN--------PSNTN---PI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPS 74 (194)
Q Consensus 7 ~~~~i~sDs~~al~~l~~--------~~~~~---~~-~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~ 74 (194)
.++.|+|||+++++.|.+ .+..+ ++ -..+++.+..+.. +..|.|.|||||+|++|||.||+||+.|+
T Consensus 65 ~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~ 143 (158)
T 2e4l_A 65 CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAA 143 (158)
T ss_dssp CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHH
Confidence 789999999999999987 33221 21 1244444445533 56999999999999999999999999998
Q ss_pred CC
Q psy2213 75 AS 76 (194)
Q Consensus 75 ~~ 76 (194)
..
T Consensus 144 ~~ 145 (158)
T 2e4l_A 144 EA 145 (158)
T ss_dssp HS
T ss_pred Hh
Confidence 76
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.43 E-value=9.1e-14 Score=105.98 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=52.0
Q ss_pred CCeEEEEeCcHHHHHHHhCCCCCChHH-HHH-HHHHHHHHhcCCcEEEEeecCCCC-----ChhhHHHhHHhcCCCCCC
Q psy2213 6 KEKFVIISDSKSTLLALSNPSNTNPIV-SLI-HSCWSDLLCCGKQLAFLWCPSHTG-----IQGNEAVDRAARNPSASL 77 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~~~~~~~~-~~i-~~~~~~l~~~~~~i~~~Wvp~H~g-----i~gNe~AD~~Ak~a~~~~ 77 (194)
..++.|+|||++++++|-......++. .++ ++.+..+ ..+..|.|.|||||+| ++|||+||++|++|+...
T Consensus 80 ~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 80 GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 578999999999999993211112221 232 2222344 3678999999999999 999999999999998763
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.40 E-value=1.1e-13 Score=105.54 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=53.8
Q ss_pred CeEEEEeCcHHHHHHHhC---------CCC-CC--hH-HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCC
Q psy2213 7 EKFVIISDSKSTLLALSN---------PSN-TN--PI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNP 73 (194)
Q Consensus 7 ~~~~i~sDs~~al~~l~~---------~~~-~~--~~-~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a 73 (194)
.++.|+|||+++++.|.+ ++. .+ ++ -..+++.+..+.. ...|.|.|||||+|++|||.||+|||.|
T Consensus 67 ~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a 145 (166)
T 1ril_A 67 CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQ 145 (166)
T ss_dssp CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence 589999999999999998 222 21 11 1244444555533 4689999999999999999999999999
Q ss_pred CCCC
Q psy2213 74 SASL 77 (194)
Q Consensus 74 ~~~~ 77 (194)
+...
T Consensus 146 ~~~~ 149 (166)
T 1ril_A 146 AQSQ 149 (166)
T ss_dssp HTSS
T ss_pred HHHh
Confidence 8874
No 8
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.37 E-value=3.1e-13 Score=102.98 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=51.5
Q ss_pred CCeEEEEeCcHHHHHHHhC--------CCCC---ChH-HHHHHHHHHHHHhcCCcEEEEeecCCCCC------hhhHHHh
Q psy2213 6 KEKFVIISDSKSTLLALSN--------PSNT---NPI-VSLIHSCWSDLLCCGKQLAFLWCPSHTGI------QGNEAVD 67 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~--------~~~~---~~~-~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi------~gNe~AD 67 (194)
+.+|.|+|||+++++.|.. ++.. .++ -.++++.+.++......|.|.|||||+|+ +|||+||
T Consensus 75 ~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD 154 (165)
T 2lsn_A 75 PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALAD 154 (165)
T ss_dssp SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHH
Confidence 3579999999999999974 2222 122 13444445454455678999999999995 5899999
Q ss_pred HHhcCCCC
Q psy2213 68 RAARNPSA 75 (194)
Q Consensus 68 ~~Ak~a~~ 75 (194)
+||++|+.
T Consensus 155 ~LA~~gA~ 162 (165)
T 2lsn_A 155 KLATQGSY 162 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998864
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.36 E-value=2.6e-14 Score=106.95 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=53.9
Q ss_pred eEEEEeCcHHHHHHHhCCCCCC-hHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCCCCCCC
Q psy2213 8 KFVIISDSKSTLLALSNPSNTN-PIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLP 78 (194)
Q Consensus 8 ~~~i~sDs~~al~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 78 (194)
++.|++||+.+.+-+.+.+..+ +....+.+.+.+|.. .|.|.|||||+|++|||.||+|||+|+....
T Consensus 71 ~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 71 KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 7899999998888887766554 344455544455532 8999999999999999999999999988753
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.27 E-value=5.1e-12 Score=112.87 Aligned_cols=65 Identities=26% Similarity=0.413 Sum_probs=52.3
Q ss_pred CCeEEEEeCcHHHHHHHhCCCCC--ChHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCCC
Q psy2213 6 KEKFVIISDSKSTLLALSNPSNT--NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPS 74 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~~~~--~~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~ 74 (194)
..++.|++||+++++.|+++... .++..++. ..+ ..+..|.|.|||||+|++|||.||+||++|+
T Consensus 489 ~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~---~~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 489 GPKVNIIVDSQYVMGIVASQPTESESKIVNQII---EEM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEEEEEESCHHHHHHHHTCCSEESCHHHHHHH---HHH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred CCeEEEEEehHHHHHHHhcccccccHHHHHHHH---HHh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 46899999999999999986533 34554443 233 3478899999999999999999999999985
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.20 E-value=1e-11 Score=110.94 Aligned_cols=64 Identities=27% Similarity=0.468 Sum_probs=49.1
Q ss_pred CCeEEEEeCcHHHHHHHhCCCCC--ChHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCC
Q psy2213 6 KEKFVIISDSKSTLLALSNPSNT--NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNP 73 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~~~~--~~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a 73 (194)
..++.|++||+++++.|.++... .++..++. ..+. ....|.|.|||||+|++|||.||+||++|
T Consensus 492 ~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~---~~l~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 492 GLEVNIVTDSQYALGIIQAQPDKSESELVNQII---EQLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHH---HHHH-HCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHH---HHHh-cCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 46899999999999999986544 34554443 3443 35689999999999999999999999986
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.06 E-value=2.3e-10 Score=83.61 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCeEEEEeCcHHHHHHHhCCCCC-ChHHHHHHHHHHHH-HhcCCcEEEEeecCCCCChhhHHHhHHhcCCCC
Q psy2213 6 KEKFVIISDSKSTLLALSNPSNT-NPIVSLIHSCWSDL-LCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSA 75 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~~~~-~~~~~~i~~~~~~l-~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~~ 75 (194)
..++.|++||+++++.+.+.+.. ++-...+.+.+..+ ......|.|.|||+ +|||.||+|||.|..
T Consensus 69 ~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 69 DMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp TCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred CceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 34899999999999999987753 33333444445555 45556899999995 799999999998764
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.06 E-value=3.3e-10 Score=83.16 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCeEEEEeCcHHHHHHHhCCCCC-ChHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCCCCC
Q psy2213 5 PKEKFVIISDSKSTLLALSNPSNT-NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 76 (194)
Q Consensus 5 ~~~~~~i~sDs~~al~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 76 (194)
..+++.|++||+++++.+.+.+.. ++....+.+.+..+......|.|.|||+ +|||.||+||+.|...
T Consensus 65 ~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 65 GATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp TCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred CCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 357899999999999999986543 4444555556667766678999999996 7999999999988654
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.93 E-value=6.5e-10 Score=82.68 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCeEEEEeCcHHHHHHHhCCCCC-ChHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcCCCCC
Q psy2213 6 KEKFVIISDSKSTLLALSNPSNT-NPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARNPSAS 76 (194)
Q Consensus 6 ~~~~~i~sDs~~al~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 76 (194)
.+++.|++||+++++.+++++.. ++....+++.+..+.... .|.|.|||+ ++|+.||+||+.|+..
T Consensus 68 ~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 68 ISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp CCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred CCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 46899999999999999987654 233344444444443322 599999999 5999999999998775
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=94.86 E-value=0.0039 Score=45.75 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=40.8
Q ss_pred eEEEEeCcHHHHHHHhCCCC-CC--------hHHHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHHHhH
Q psy2213 8 KFVIISDSKSTLLALSNPSN-TN--------PIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDR 68 (194)
Q Consensus 8 ~~~i~sDs~~al~~l~~~~~-~~--------~~~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~ 68 (194)
++.|+|||+++++.+++.+. .+ .+.+.|..+..-++ +..++...|..|++.-||.-||-
T Consensus 72 ~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~--~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 72 RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN--THTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH--HCCCCCCEEECCHHHHCSCTTCC
T ss_pred eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh--hCCCceeEEEeccCccCcCcccc
Confidence 78999999999999987652 21 13333333333332 45667777899999999998883
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=73.47 E-value=6.8 Score=28.00 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=15.2
Q ss_pred eEEEEeCcHHHHHHHhC
Q psy2213 8 KFVIISDSKSTLLALSN 24 (194)
Q Consensus 8 ~~~i~sDs~~al~~l~~ 24 (194)
++.|+|||+++++-|.+
T Consensus 66 ~v~i~tDSqyVi~wi~~ 82 (134)
T 4htu_A 66 RKPIYSNSQTAIKWVKD 82 (134)
T ss_dssp CCCEEESCHHHHHHHHH
T ss_pred CEEEEcchHHHHHHHHc
Confidence 47999999999999985
No 17
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=50.06 E-value=7.2 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCc-ccCCCCccceeee-cccchhhhc
Q psy2213 159 STC-GCGEILSVQHILT-CALHGHIRA 183 (194)
Q Consensus 159 p~C-~Cg~~et~~H~l~-Cp~~~~~R~ 183 (194)
-.| .||+..+-.|.+- ||+......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~ 98 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYC 98 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccC
Confidence 679 9999999999999 999886543
No 18
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=30.74 E-value=37 Score=24.79 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=24.4
Q ss_pred HHHHHHhcCCcEEEEeecCCCCChhhHHHhHHhcC
Q psy2213 38 CWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARN 72 (194)
Q Consensus 38 ~~~~l~~~~~~i~~~Wvp~H~gi~gNe~AD~~Ak~ 72 (194)
+...|...|.+|.+.||||=-.||- .|.++|+.
T Consensus 34 A~~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 34 AKAALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 4467777788999999999987764 45566654
No 19
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=25.41 E-value=19 Score=17.85 Aligned_cols=6 Identities=33% Similarity=1.043 Sum_probs=3.3
Q ss_pred CCcccC
Q psy2213 159 STCGCG 164 (194)
Q Consensus 159 p~C~Cg 164 (194)
|.|.|.
T Consensus 20 PfC~Cr 25 (26)
T 2fqc_A 20 PFCHCR 25 (26)
T ss_dssp GGGCCC
T ss_pred CcCCCC
Confidence 556553
No 20
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=24.87 E-value=71 Score=28.17 Aligned_cols=34 Identities=15% Similarity=-0.027 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHH
Q psy2213 32 VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEA 65 (194)
Q Consensus 32 ~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~ 65 (194)
..++++.+.+++..|..|-+-+|+.|++-.+|..
T Consensus 192 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~ 225 (602)
T 2bhu_A 192 PEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYL 225 (602)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccccCCccc
Confidence 5788888899999999999999999999877644
No 21
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=22.50 E-value=69 Score=27.99 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeecCCCCChhh
Q psy2213 32 VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGN 63 (194)
Q Consensus 32 ~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gN 63 (194)
..++++.+.+++..|..|-+-|||.|++-...
T Consensus 219 ~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~ 250 (585)
T 1wzl_A 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFF 250 (585)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCTTSH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCcCCCccH
Confidence 57888888999999999999999999997543
No 22
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=21.23 E-value=1.1e+02 Score=26.73 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeecCCCCChhhHH
Q psy2213 32 VSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEA 65 (194)
Q Consensus 32 ~~~i~~~~~~l~~~~~~i~~~Wvp~H~gi~gNe~ 65 (194)
..++.+.+.+++..|..|-+-|||.|++-....-
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~f 255 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPF 255 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcCcccchhH
Confidence 5788888899999999999999999999765433
Done!