RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2213
(194 letters)
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 34.6 bits (78), Expect = 0.002
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 25 PSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAAR 71
++ P+ ++ D Q+ + W H G NE D AR
Sbjct: 90 TADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELAR 136
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 34.1 bits (77), Expect = 0.003
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 5 PKEKFVIISDSKSTLLALSNPSNTNPIVSLIHSCWSDLLCCGKQLAFLWCPSHTGIQGNE 64
K II DS+ + +++ + + + + W P+H GI GN+
Sbjct: 59 SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEM--IKKEAIYVAWVPAHKGIGGNQ 116
Query: 65 AVDRAAR 71
VD
Sbjct: 117 EVDHLVS 123
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 34.2 bits (77), Expect = 0.004
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 36 HSCWSDLLCCGKQLAFLWCPSHTGIQGNEAVDRAARN 72
L ++ F + HTG NE VDR AR
Sbjct: 103 LWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 139
>d1x9fa_ a.1.1.2 (A:) Extracellular dodecameric hemoglobin
(erythrocruorin), subunit IV (globin A) {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 147
Score = 26.3 bits (57), Expect = 1.7
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 83 CSPEDFKPFIRKLIKDLWQQSWSSIPNSNK 112
CS ED R+ I+ +W WSS +
Sbjct: 3 CSYED-----RREIRHIWDDVWSSSFTDRR 27
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 26.3 bits (57), Expect = 2.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 87 DFKPFIRKLIKDLWQQSWSSIPNSNKLKSIKPIIG 121
+ K L +W ++P + I I G
Sbjct: 20 ELKERAHMLCARFLGGAWKTVPLEH--LRISRIKG 52
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 24.7 bits (54), Expect = 3.7
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 80 LKLCSPEDFKPFIRKLIKDLWQQSWS 105
++ DF I+K + + WS
Sbjct: 10 VEKVKSGDFDE-IKKYVNTFMKSGWS 34
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 25.5 bits (55), Expect = 4.4
Identities = 29/164 (17%), Positives = 45/164 (27%), Gaps = 26/164 (15%)
Query: 32 VSLIHSCWSDLL---CCGKQLAFLWCPSHTGIQGNEAVDRAARNPSASLPPLKLCSPEDF 88
V L+ + W +LL + L G G D + S L P +L + F
Sbjct: 74 VILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSF 133
Query: 89 KPFIRKLIKDLWQQSWSSIPN--SNKLKSIKPIIGPWPSSDRQNRYEEVVICRMRIGHTR 146
IK + I + S K+K + E+ + I
Sbjct: 134 SYHRNSAIKAGVSAIFDRILSELSVKMKRLNL------------DRRELSCLKAII---- 177
Query: 147 ATHGHLFKRAPPSTCGCGEILSVQHILTCALHGHIRASLPTPPA 190
L+ EI + + L H R P
Sbjct: 178 -----LYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDG 216
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 25.4 bits (55), Expect = 4.7
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 85 PEDFKPFIRKLIKDLWQQSWSSIPN-----SNKLKSIKP 118
P++F + W W + +K+ KP
Sbjct: 181 PKNFMELLTNQEAQQWVSGWRLNADSVLWGGHKVFMDKP 219
>d1x9fb_ a.1.1.2 (B:) Extracellular dodecameric hemoglobin
(erythrocruorin), subunit II (globin B) {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 145
Score = 25.1 bits (54), Expect = 4.8
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 5/27 (18%)
Query: 83 CSPEDFKPFIRKLIKDLWQQSWSSIPN 109
C + +K W +++ S +
Sbjct: 4 CGVLE-----GLKVKSEWGRAYGSGHD 25
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 25.4 bits (55), Expect = 5.8
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 136 VICRMRIGHTRATHGHLFKRAPPSTCGCGEILSV 169
+ R + + H R G V
Sbjct: 214 PVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRV 247
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 25.1 bits (54), Expect = 6.4
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 36 HSCWSDLLCCGKQLAFLWC---PSHTGIQGNEAVDRAARNPSASLPPLKLCSPEDFKPFI 92
S SD+ G + + ++G E + + PP C PE +
Sbjct: 189 FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPE--CPPE-----L 241
Query: 93 RKLIKDLWQQSWSSIPN 109
L+ D W W P+
Sbjct: 242 YALMSDCWIYKWEDRPD 258
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 36
Score = 22.8 bits (49), Expect = 6.5
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 31 IVSLIHSCWSDLLCCGKQLAFL 52
IV ++H ++L+CCG+ + +
Sbjct: 15 IVEVLHGGGAELVCCGEPMKHM 36
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain
{Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:
887]}
Length = 37
Score = 22.4 bits (48), Expect = 8.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 31 IVSLIHSCWSDLLCCGKQLAFL 52
IV +++ +L+CC + + +
Sbjct: 15 IVEVLNGGIGELVCCNQDMKLM 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.438
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 766,340
Number of extensions: 34636
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 17
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)