BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2215
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZB9|DCTN5_MOUSE Dynactin subunit 5 OS=Mus musculus GN=Dctn5 PE=1 SV=1
Length = 182
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
ASGNKVSR+S++ G+QNIVL GK II D ++RGDLAN+R GR+C++ VIRPPFKKF
Sbjct: 17 ASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76
Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
+KG +P G V++ V AQI SY+
Sbjct: 77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108
>sp|Q9BTE1|DCTN5_HUMAN Dynactin subunit 5 OS=Homo sapiens GN=DCTN5 PE=1 SV=1
Length = 182
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
ASGNKVSR+S++ G+QNIVL GK I+ D ++RGDLAN+R GR+C++ VIRPPFKKF
Sbjct: 17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76
Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
+KG +P G V++ V AQI SY+
Sbjct: 77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108
>sp|Q5R559|DCTN5_PONAB Dynactin subunit 5 OS=Pongo abelii GN=DCTN5 PE=2 SV=1
Length = 182
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 7/96 (7%)
Query: 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
ASGNKVSR+S++ G+QNIVL GK I+ D ++RGDLAN+R GR+C++ VIRPPFKKF
Sbjct: 17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76
Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
+KG +P G V++ V AQI SY+
Sbjct: 77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108
>sp|Q54XU5|DCTN5_DICDI Dynactin subunit 5 OS=Dictyostelium discoideum GN=dynE PE=3 SV=1
Length = 198
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA 127
+GNKVS+ S++ G NI L GK II+ ++RGDLA++ GR IIS+ VIRP KKF
Sbjct: 18 NGNKVSKSSILCGIMNIRLHGKTIIKPGVIVRGDLASVNIGRLSIISENTVIRPSSKKF- 76
Query: 128 KGFLVY 133
KG LVY
Sbjct: 77 KGSLVY 82
>sp|Q5YWR8|URE1_NOCFA Urease subunit alpha OS=Nocardia farcinica (strain IFM 10152)
GN=ureC PE=3 SV=1
Length = 573
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 52 ESKSSHKILVYSGAVASGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLAN 104
E +S L AV G KV R+S+ GA + V+TG VI+ +++ D+
Sbjct: 34 EDRSGGPGLAGDEAVFGGGKVLRESMGQSRATRADGAPDTVITGAVIVDHWGIVKADIG- 92
Query: 105 IRTGRYCIISKG 116
IR GR C I K
Sbjct: 93 IRDGRICGIGKA 104
>sp|B2HSZ2|URE1_MYCMM Urease subunit alpha OS=Mycobacterium marinum (strain ATCC BAA-535
/ M) GN=ureC PE=3 SV=1
Length = 577
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 65 AVASGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
AV G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 47 AVFGGGKVLRESMGQGRVTRAEGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVAIGKA 104
>sp|O51834|EFP_BUCMP Elongation factor P (Fragment) OS=Buchnera aphidicola subsp. Myzus
persicae GN=efp PE=3 SV=1
Length = 187
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 91 IIQCDAVLRGDLANIRTGRYCIISKGVVIRPPF 123
+I+ DA L+GD N + I+S G ++R P
Sbjct: 135 VIETDATLKGDTINTGVTKLAILSTGAIVRVPL 167
>sp|P0A660|URE1_MYCTU Urease subunit alpha OS=Mycobacterium tuberculosis GN=ureC PE=1
SV=3
Length = 577
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 10 RDSYVETV--SSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVA 67
R+ Y + ++G R LA+TN V V E + L AV
Sbjct: 6 RERYAQLYGPTTGDRIRLADTNLLVEVT----------------EDRCGGPGLAGDEAVF 49
Query: 68 SGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 50 GGGKVLRESMGQGRASRADGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVGIGKA 104
>sp|A5U3L7|URE1_MYCTA Urease subunit alpha OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=ureC PE=3 SV=1
Length = 577
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 10 RDSYVETV--SSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVA 67
R+ Y + ++G R LA+TN V V E + L AV
Sbjct: 6 RERYAQLYGPTTGDRIRLADTNLLVEVT----------------EDRCGGPGLAGDEAVF 49
Query: 68 SGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 50 GGGKVLRESMGQGRASRADGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVGIGKA 104
>sp|C1APC7|URE1_MYCBT Urease subunit alpha OS=Mycobacterium bovis (strain BCG / Tokyo 172
/ ATCC 35737 / TMC 1019) GN=ureC PE=3 SV=1
Length = 577
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 10 RDSYVETV--SSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVA 67
R+ Y + ++G R LA+TN V V E + L AV
Sbjct: 6 RERYAQLYGPTTGDRIRLADTNLLVEVT----------------EDRCGGPGLAGDEAVF 49
Query: 68 SGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 50 GGGKVLRESMGQGRASRADGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVGIGKA 104
>sp|A1KJR2|URE1_MYCBP Urease subunit alpha OS=Mycobacterium bovis (strain BCG / Pasteur
1173P2) GN=ureC PE=3 SV=1
Length = 577
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 10 RDSYVETV--SSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVA 67
R+ Y + ++G R LA+TN V V E + L AV
Sbjct: 6 RERYAQLYGPTTGDRIRLADTNLLVEVT----------------EDRCGGPGLAGDEAVF 49
Query: 68 SGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 50 GGGKVLRESMGQGRASRADGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVGIGKA 104
>sp|P0A661|URE1_MYCBO Urease subunit alpha OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=ureC PE=3 SV=1
Length = 577
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 10 RDSYVETV--SSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVA 67
R+ Y + ++G R LA+TN V V E + L AV
Sbjct: 6 RERYAQLYGPTTGDRIRLADTNLLVEVT----------------EDRCGGPGLAGDEAVF 49
Query: 68 SGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
G KV R+S+ GA + V+TG VII +++ D+ IR GR I K
Sbjct: 50 GGGKVLRESMGQGRASRADGAPDTVITGAVIIDYWGIIKADIG-IRDGRIVGIGKA 104
>sp|B1MB85|URE1_MYCA9 Urease subunit alpha OS=Mycobacterium abscessus (strain ATCC 19977
/ DSM 44196) GN=ureC PE=3 SV=1
Length = 577
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 65 AVASGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
AV G KV R+S+ GA + V+TG +II +++ D+ IR GR I K
Sbjct: 47 AVFGGGKVLRESMGQSRLTRAGGAPDTVITGAIIIDHWGIIKADIG-IRDGRIVGIGKA 104
>sp|A0PSG2|URE1_MYCUA Urease subunit alpha OS=Mycobacterium ulcerans (strain Agy99)
GN=ureC PE=3 SV=1
Length = 577
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 65 AVASGNKVSRKSL-------VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKG 116
AV G KV R+S+ GA + V+TG VII +++ ++ IR GR I K
Sbjct: 47 AVFGGGKVLRESMGQGRVTRAEGAPDTVITGAVIIDYWGIIKANIG-IRDGRIVAIGKA 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,751,803
Number of Sequences: 539616
Number of extensions: 2149493
Number of successful extensions: 4507
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4497
Number of HSP's gapped (non-prelim): 20
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)