Query psy2215
Match_columns 172
No_of_seqs 187 out of 1227
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:09:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3121|consensus 100.0 7.4E-32 1.6E-36 214.3 6.1 110 1-164 1-113 (184)
2 COG0663 PaaY Carbonic anhydras 99.7 1.4E-16 3E-21 129.7 10.2 86 68-164 16-101 (176)
3 cd03359 LbH_Dynactin_5 Dynacti 99.6 3.4E-15 7.4E-20 117.8 11.1 81 67-147 5-88 (161)
4 PLN02472 uncharacterized prote 99.4 2.4E-12 5.2E-17 109.5 11.1 88 68-162 64-153 (246)
5 TIGR02287 PaaY phenylacetic ac 99.4 4.3E-12 9.4E-17 104.0 9.9 84 67-161 12-95 (192)
6 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.3 4.3E-12 9.4E-17 106.6 8.3 111 43-164 42-190 (231)
7 PRK13627 carnitine operon prot 99.3 2.3E-11 4.9E-16 100.1 10.8 84 67-161 14-97 (196)
8 PLN02296 carbonate dehydratase 99.3 2.1E-11 4.6E-16 104.9 11.0 87 68-160 57-144 (269)
9 PRK10502 putative acyl transfe 99.3 4.8E-11 1E-15 96.3 11.0 103 59-165 46-155 (182)
10 PRK09527 lacA galactoside O-ac 99.2 7.2E-11 1.6E-15 97.9 10.9 100 62-165 54-162 (203)
11 PRK10092 maltose O-acetyltrans 99.2 9.3E-11 2E-15 95.4 10.6 80 81-164 71-159 (183)
12 cd05825 LbH_wcaF_like wcaF-lik 99.2 9.6E-11 2.1E-15 86.6 9.5 80 82-165 2-87 (107)
13 PRK14355 glmU bifunctional N-a 99.2 1E-10 2.2E-15 105.1 8.8 90 44-147 218-319 (459)
14 cd04745 LbH_paaY_like paaY-lik 99.2 4E-10 8.6E-15 88.1 11.1 53 67-121 4-56 (155)
15 cd04646 LbH_Dynactin_6 Dynacti 99.2 4.4E-10 9.6E-15 89.3 11.0 91 69-164 5-113 (164)
16 cd03357 LbH_MAT_GAT Maltose O- 99.1 5E-10 1.1E-14 88.9 10.9 81 81-165 60-149 (169)
17 COG1208 GCD1 Nucleoside-diphos 99.1 1.8E-10 3.9E-15 102.0 8.5 113 40-163 208-324 (358)
18 cd04650 LbH_FBP Ferripyochelin 99.1 6.7E-10 1.5E-14 87.4 10.9 74 67-147 4-77 (154)
19 PRK05293 glgC glucose-1-phosph 99.1 3.5E-10 7.5E-15 99.0 9.8 107 44-161 235-357 (380)
20 TIGR01208 rmlA_long glucose-1- 99.1 3.3E-10 7.1E-15 98.4 9.5 73 43-122 211-288 (353)
21 cd04645 LbH_gamma_CA_like Gamm 99.1 9.9E-10 2.1E-14 85.4 11.0 72 69-147 5-76 (153)
22 TIGR01173 glmU UDP-N-acetylglu 99.0 1.6E-09 3.5E-14 96.0 10.3 110 45-162 212-341 (451)
23 COG0663 PaaY Carbonic anhydras 99.0 2E-09 4.3E-14 88.0 9.9 104 50-166 9-121 (176)
24 PRK00844 glgC glucose-1-phosph 99.0 1.5E-09 3.2E-14 96.7 10.0 102 47-163 256-382 (407)
25 PRK14353 glmU bifunctional N-a 99.0 1.7E-09 3.8E-14 96.3 9.9 17 48-64 224-240 (446)
26 cd00208 LbetaH Left-handed par 99.0 5.9E-09 1.3E-13 70.3 9.3 73 85-164 2-74 (78)
27 cd03360 LbH_AT_putative Putati 99.0 4.9E-09 1.1E-13 81.0 9.6 76 83-164 96-180 (197)
28 cd00710 LbH_gamma_CA Gamma car 99.0 7.8E-09 1.7E-13 82.0 11.0 90 68-163 7-110 (167)
29 cd04647 LbH_MAT_like Maltose O 99.0 8.1E-09 1.7E-13 74.5 9.8 76 83-162 1-86 (109)
30 PRK14356 glmU bifunctional N-a 98.9 2.2E-09 4.8E-14 95.8 7.3 111 49-162 226-349 (456)
31 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.9 7.6E-09 1.7E-13 87.1 9.3 51 105-160 78-128 (254)
32 cd03349 LbH_XAT Xenobiotic acy 98.9 1E-08 2.2E-13 80.4 9.2 77 84-164 2-103 (145)
33 cd05636 LbH_G1P_TT_C_like Puta 98.9 1.4E-08 3.1E-13 79.6 10.0 61 73-147 9-69 (163)
34 PRK05289 UDP-N-acetylglucosami 98.9 7.9E-09 1.7E-13 87.9 9.1 74 69-147 20-96 (262)
35 cd03350 LbH_THP_succinylT 2,3, 98.9 1.6E-08 3.4E-13 77.8 10.0 75 83-164 31-105 (139)
36 TIGR02092 glgD glucose-1-phosp 98.9 6.8E-09 1.5E-13 90.6 8.7 108 43-160 229-352 (369)
37 cd00710 LbH_gamma_CA Gamma car 98.9 2.4E-08 5.2E-13 79.2 10.8 62 84-162 65-126 (167)
38 PLN02296 carbonate dehydratase 98.9 1.8E-08 3.9E-13 86.8 10.3 84 67-163 74-165 (269)
39 PLN02472 uncharacterized prote 98.9 2E-08 4.3E-13 85.6 10.4 84 68-164 82-173 (246)
40 cd03359 LbH_Dynactin_5 Dynacti 98.9 2.6E-08 5.7E-13 78.5 10.3 54 68-121 26-89 (161)
41 TIGR02091 glgC glucose-1-phosp 98.9 2.2E-08 4.9E-13 86.9 10.7 105 44-162 235-354 (361)
42 TIGR01852 lipid_A_lpxA acyl-[a 98.8 2.9E-08 6.2E-13 83.6 10.8 53 68-122 33-94 (254)
43 PRK09677 putative lipopolysacc 98.8 3E-08 6.6E-13 80.6 10.4 82 80-165 62-161 (192)
44 PRK14359 glmU bifunctional N-a 98.8 1.3E-08 2.8E-13 90.0 8.7 62 48-115 215-293 (430)
45 PRK14352 glmU bifunctional N-a 98.8 2.5E-08 5.5E-13 90.5 10.7 73 44-120 221-305 (482)
46 COG0110 WbbJ Acetyltransferase 98.8 2.4E-08 5.1E-13 79.1 9.0 81 80-164 64-154 (190)
47 PRK00725 glgC glucose-1-phosph 98.8 2.1E-08 4.6E-13 90.2 9.5 107 47-163 267-394 (425)
48 cd03358 LbH_WxcM_N_like WcxM-l 98.8 5.1E-08 1.1E-12 71.6 9.8 86 71-164 6-97 (119)
49 COG1044 LpxD UDP-3-O-[3-hydrox 98.8 2.2E-08 4.7E-13 88.9 9.1 41 18-58 35-83 (338)
50 cd03360 LbH_AT_putative Putati 98.8 3.9E-08 8.5E-13 75.9 9.4 68 84-160 91-158 (197)
51 cd04650 LbH_FBP Ferripyochelin 98.8 6.9E-08 1.5E-12 75.9 10.5 85 66-163 21-107 (154)
52 TIGR03570 NeuD_NnaD sugar O-ac 98.8 5.5E-08 1.2E-12 76.4 9.8 84 72-163 90-182 (201)
53 TIGR00965 dapD 2,3,4,5-tetrahy 98.8 4.8E-08 1E-12 84.5 9.8 29 132-163 174-202 (269)
54 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.8 3.8E-08 8.2E-13 82.8 8.9 35 83-120 116-150 (231)
55 PRK05289 UDP-N-acetylglucosami 98.8 4.1E-08 8.8E-13 83.5 9.2 63 71-147 4-66 (262)
56 TIGR02287 PaaY phenylacetic ac 98.7 4.1E-08 8.8E-13 80.6 8.3 67 85-160 10-83 (192)
57 cd04745 LbH_paaY_like paaY-lik 98.7 1.3E-07 2.7E-12 74.0 10.6 84 67-163 22-107 (155)
58 PRK02862 glgC glucose-1-phosph 98.7 4.8E-08 1E-12 87.9 9.3 114 43-161 249-392 (429)
59 PRK12461 UDP-N-acetylglucosami 98.7 8E-08 1.7E-12 81.9 10.2 73 70-147 18-93 (255)
60 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.7 4.6E-08 1E-12 82.3 8.6 92 68-164 16-114 (254)
61 cd04646 LbH_Dynactin_6 Dynacti 98.7 8.4E-08 1.8E-12 76.3 9.5 83 68-162 22-129 (164)
62 cd05635 LbH_unknown Uncharacte 98.7 1.2E-07 2.7E-12 70.1 9.5 37 83-122 11-47 (101)
63 TIGR01853 lipid_A_lpxD UDP-3-O 98.7 5E-08 1.1E-12 85.7 8.5 46 72-122 94-139 (324)
64 PRK13627 carnitine operon prot 98.7 1.1E-07 2.4E-12 78.2 10.0 85 67-164 32-118 (196)
65 TIGR01853 lipid_A_lpxD UDP-3-O 98.7 6.9E-08 1.5E-12 84.8 9.2 16 132-147 196-211 (324)
66 TIGR03570 NeuD_NnaD sugar O-ac 98.7 1.4E-07 3.1E-12 74.1 10.0 35 85-122 95-129 (201)
67 PRK00892 lpxD UDP-3-O-[3-hydro 98.7 7.1E-08 1.5E-12 84.6 8.9 46 72-122 103-148 (343)
68 PRK10191 putative acyl transfe 98.7 1.2E-07 2.6E-12 75.0 9.3 75 83-165 47-123 (146)
69 cd04652 LbH_eIF2B_gamma_C eIF- 98.7 1E-07 2.2E-12 66.7 7.9 73 70-163 6-78 (81)
70 TIGR01172 cysE serine O-acetyl 98.7 1.3E-07 2.7E-12 75.2 9.4 78 84-165 62-144 (162)
71 cd03353 LbH_GlmU_C N-acetyl-gl 98.7 1.6E-07 3.5E-12 75.2 10.0 47 68-120 20-66 (193)
72 PRK14354 glmU bifunctional N-a 98.7 5.3E-08 1.2E-12 86.9 7.9 109 44-160 215-342 (458)
73 TIGR03308 phn_thr-fam phosphon 98.7 1.6E-07 3.5E-12 77.5 10.2 87 69-165 25-139 (204)
74 PRK00892 lpxD UDP-3-O-[3-hydro 98.7 1E-07 2.3E-12 83.6 9.2 56 105-160 167-233 (343)
75 COG1044 LpxD UDP-3-O-[3-hydrox 98.7 9.4E-08 2E-12 84.9 8.9 56 105-160 166-232 (338)
76 cd05636 LbH_G1P_TT_C_like Puta 98.7 2.6E-07 5.7E-12 72.4 10.4 65 68-147 22-86 (163)
77 TIGR01852 lipid_A_lpxA acyl-[a 98.7 1.8E-07 4E-12 78.7 10.1 95 68-165 51-168 (254)
78 cd03350 LbH_THP_succinylT 2,3, 98.7 2.2E-07 4.8E-12 71.4 9.6 76 69-158 37-117 (139)
79 cd05635 LbH_unknown Uncharacte 98.7 1.4E-07 2.9E-12 69.9 8.1 25 135-163 66-90 (101)
80 PRK09451 glmU bifunctional N-a 98.7 7.6E-08 1.6E-12 86.4 7.9 66 50-120 229-299 (456)
81 cd00208 LbetaH Left-handed par 98.6 2.6E-07 5.6E-12 62.2 8.5 68 68-146 5-77 (78)
82 KOG1322|consensus 98.6 7.3E-08 1.6E-12 85.7 7.2 112 42-161 219-343 (371)
83 cd05787 LbH_eIF2B_epsilon eIF- 98.6 2.3E-07 5E-12 63.5 8.2 30 87-120 3-32 (79)
84 cd03357 LbH_MAT_GAT Maltose O- 98.6 2.8E-07 6.2E-12 73.1 9.7 69 70-147 69-152 (169)
85 cd04645 LbH_gamma_CA_like Gamm 98.6 4.7E-07 1E-11 70.4 10.5 83 67-162 21-105 (153)
86 cd03358 LbH_WxcM_N_like WcxM-l 98.6 2.2E-07 4.8E-12 68.2 7.9 50 86-147 1-50 (119)
87 PRK11132 cysE serine acetyltra 98.6 2.3E-07 4.9E-12 80.4 8.9 80 83-166 141-225 (273)
88 cd03352 LbH_LpxD UDP-3-O-acyl- 98.6 3.5E-07 7.7E-12 73.6 9.4 89 69-162 25-124 (205)
89 PLN02241 glucose-1-phosphate a 98.6 2.8E-07 6E-12 83.1 9.7 75 43-122 257-349 (436)
90 cd05825 LbH_wcaF_like wcaF-lik 98.6 8.1E-07 1.8E-11 65.5 10.5 71 68-147 8-90 (107)
91 COG2171 DapD Tetrahydrodipicol 98.6 3.3E-07 7.2E-12 79.2 9.5 112 47-165 85-213 (271)
92 KOG1461|consensus 98.6 1.6E-07 3.5E-12 88.8 7.7 72 82-167 332-407 (673)
93 PRK12461 UDP-N-acetylglucosami 98.6 3.4E-07 7.3E-12 78.1 8.9 61 72-146 2-62 (255)
94 TIGR01173 glmU UDP-N-acetylglu 98.6 3.1E-07 6.7E-12 81.5 9.0 46 69-120 267-312 (451)
95 cd04647 LbH_MAT_like Maltose O 98.5 7.3E-07 1.6E-11 64.2 9.2 70 69-147 7-92 (109)
96 PLN02739 serine acetyltransfer 98.5 3.2E-07 7E-12 82.1 8.4 58 105-166 232-289 (355)
97 PRK11830 dapD 2,3,4,5-tetrahyd 98.5 8.8E-07 1.9E-11 76.7 10.9 57 105-164 145-206 (272)
98 cd03354 LbH_SAT Serine acetylt 98.5 8.3E-07 1.8E-11 64.4 9.2 76 84-164 3-84 (101)
99 PRK14357 glmU bifunctional N-a 98.5 5.8E-07 1.3E-11 80.2 9.8 72 45-120 206-289 (448)
100 PLN02694 serine O-acetyltransf 98.5 3.9E-07 8.3E-12 79.8 8.4 80 83-166 160-244 (294)
101 cd03356 LbH_G1P_AT_C_like Left 98.5 7.4E-07 1.6E-11 61.4 7.9 61 84-161 17-77 (79)
102 cd03352 LbH_LpxD UDP-3-O-acyl- 98.5 5.9E-07 1.3E-11 72.3 8.3 83 68-164 6-104 (205)
103 cd03353 LbH_GlmU_C N-acetyl-gl 98.5 7.8E-07 1.7E-11 71.2 8.8 74 83-163 15-96 (193)
104 COG1207 GlmU N-acetylglucosami 98.5 3.9E-07 8.4E-12 83.3 7.7 96 67-168 252-354 (460)
105 PRK09677 putative lipopolysacc 98.5 1.1E-06 2.4E-11 71.5 9.6 79 68-160 70-172 (192)
106 PRK14360 glmU bifunctional N-a 98.5 3.8E-07 8.2E-12 81.3 7.4 35 83-120 262-296 (450)
107 PRK09527 lacA galactoside O-ac 98.5 8.3E-07 1.8E-11 73.7 8.9 67 72-147 84-165 (203)
108 TIGR00965 dapD 2,3,4,5-tetrahy 98.5 9.2E-07 2E-11 76.6 9.2 44 104-159 173-216 (269)
109 cd04652 LbH_eIF2B_gamma_C eIF- 98.5 2.1E-06 4.6E-11 59.9 9.5 68 86-167 2-72 (81)
110 cd05787 LbH_eIF2B_epsilon eIF- 98.4 3E-06 6.6E-11 57.8 9.4 73 70-162 6-78 (79)
111 PLN02357 serine acetyltransfer 98.4 1.4E-06 3E-11 78.2 9.6 79 84-166 227-310 (360)
112 PRK10092 maltose O-acetyltrans 98.4 1.8E-06 3.9E-11 70.3 9.5 67 72-147 82-163 (183)
113 cd05824 LbH_M1P_guanylylT_C Ma 98.4 3.5E-06 7.7E-11 58.7 9.7 62 84-162 18-79 (80)
114 PRK10191 putative acyl transfe 98.4 2.5E-06 5.4E-11 67.5 9.9 55 84-147 68-126 (146)
115 cd05824 LbH_M1P_guanylylT_C Ma 98.4 1.7E-06 3.7E-11 60.3 8.0 59 87-162 3-61 (80)
116 PRK10502 putative acyl transfe 98.4 2E-06 4.4E-11 69.4 9.4 71 68-147 76-158 (182)
117 PRK14355 glmU bifunctional N-a 98.4 1.4E-06 2.9E-11 78.5 9.2 60 72-147 277-336 (459)
118 PRK14358 glmU bifunctional N-a 98.4 1.5E-06 3.3E-11 79.4 9.4 79 82-166 269-354 (481)
119 cd03356 LbH_G1P_AT_C_like Left 98.4 4.5E-06 9.8E-11 57.5 9.6 61 86-160 2-64 (79)
120 PRK14356 glmU bifunctional N-a 98.4 1.6E-06 3.5E-11 77.5 8.7 79 71-158 271-368 (456)
121 PRK09451 glmU bifunctional N-a 98.4 1.8E-06 3.8E-11 77.6 8.9 46 69-120 271-316 (456)
122 PRK14353 glmU bifunctional N-a 98.4 2.1E-06 4.5E-11 76.6 9.1 55 84-147 281-337 (446)
123 cd04651 LbH_G1P_AT_C Glucose-1 98.4 4.5E-06 9.9E-11 61.5 9.3 76 74-167 6-83 (104)
124 PRK14358 glmU bifunctional N-a 98.4 2.9E-06 6.3E-11 77.5 10.0 70 71-147 278-356 (481)
125 COG1045 CysE Serine acetyltran 98.3 3.4E-06 7.3E-11 70.0 8.8 81 84-168 68-153 (194)
126 KOG1461|consensus 98.3 1.5E-06 3.3E-11 82.4 7.3 67 83-166 350-416 (673)
127 KOG4042|consensus 98.3 1.9E-06 4E-11 69.8 6.8 93 71-168 16-131 (190)
128 KOG3121|consensus 98.3 1.1E-06 2.4E-11 70.7 4.8 76 68-147 37-123 (184)
129 PRK14360 glmU bifunctional N-a 98.3 5.2E-06 1.1E-10 74.0 9.4 31 132-165 391-421 (450)
130 COG0448 GlgC ADP-glucose pyrop 98.2 4.6E-06 1E-10 75.6 8.5 114 41-164 235-363 (393)
131 PRK11830 dapD 2,3,4,5-tetrahyd 98.2 8.9E-06 1.9E-10 70.5 9.6 64 84-159 151-219 (272)
132 cd04649 LbH_THP_succinylT_puta 98.2 9.4E-06 2E-10 64.8 8.5 51 105-163 48-100 (147)
133 TIGR02353 NRPS_term_dom non-ri 98.2 8.1E-06 1.8E-10 78.4 9.7 81 68-160 111-204 (695)
134 TIGR03536 DapD_gpp 2,3,4,5-tet 98.2 1.1E-05 2.5E-10 71.7 9.5 90 64-163 173-277 (341)
135 TIGR03308 phn_thr-fam phosphon 98.2 6E-06 1.3E-10 68.2 7.3 59 72-147 11-69 (204)
136 cd03354 LbH_SAT Serine acetylt 98.2 2.2E-05 4.7E-10 56.9 9.2 56 83-147 28-88 (101)
137 PRK11132 cysE serine acetyltra 98.2 1.2E-05 2.6E-10 69.7 9.2 56 83-147 161-227 (273)
138 COG1043 LpxA Acyl-[acyl carrie 98.2 1.1E-05 2.5E-10 69.2 8.8 62 83-147 33-97 (260)
139 PRK14359 glmU bifunctional N-a 98.1 2.6E-05 5.6E-10 69.1 11.3 58 104-166 342-399 (430)
140 KOG1462|consensus 98.1 3.9E-06 8.5E-11 76.1 5.9 77 77-168 329-408 (433)
141 cd03349 LbH_XAT Xenobiotic acy 98.1 1.9E-05 4.1E-10 62.0 8.5 62 77-147 15-107 (145)
142 PLN02739 serine acetyltransfer 98.1 2.5E-05 5.4E-10 70.1 9.5 56 83-147 225-291 (355)
143 PLN02357 serine acetyltransfer 98.1 3E-05 6.5E-10 69.7 9.9 56 83-147 246-312 (360)
144 PF14602 Hexapep_2: Hexapeptid 98.1 6.4E-06 1.4E-10 50.2 3.9 33 104-147 1-33 (34)
145 TIGR01172 cysE serine O-acetyl 98.1 4E-05 8.8E-10 60.8 9.5 55 84-147 88-147 (162)
146 COG1208 GCD1 Nucleoside-diphos 98.0 1.3E-05 2.8E-10 71.2 7.2 53 96-160 256-310 (358)
147 TIGR02353 NRPS_term_dom non-ri 98.0 2E-05 4.4E-10 75.7 9.1 75 83-164 597-675 (695)
148 COG1207 GlmU N-acetylglucosami 98.0 9.3E-06 2E-10 74.5 6.4 74 72-160 277-363 (460)
149 PRK14354 glmU bifunctional N-a 98.0 4E-05 8.7E-10 68.5 10.3 66 71-147 273-350 (458)
150 TIGR03535 DapD_actino 2,3,4,5- 98.0 4.1E-05 8.9E-10 67.7 10.1 89 67-165 151-254 (319)
151 COG1045 CysE Serine acetyltran 98.0 2.4E-05 5.2E-10 65.0 8.0 71 67-147 65-153 (194)
152 TIGR03535 DapD_actino 2,3,4,5- 98.0 3.2E-05 6.9E-10 68.4 9.2 60 82-155 198-262 (319)
153 PRK14357 glmU bifunctional N-a 98.0 2E-05 4.4E-10 70.3 8.1 31 132-165 384-414 (448)
154 PRK14352 glmU bifunctional N-a 98.0 3.7E-05 8.1E-10 69.9 9.3 31 68-100 276-306 (482)
155 cd04651 LbH_G1P_AT_C Glucose-1 98.0 3.1E-05 6.8E-10 57.0 6.9 55 91-160 3-59 (104)
156 COG0110 WbbJ Acetyltransferase 98.0 4.7E-05 1E-09 60.2 8.4 65 74-147 78-158 (190)
157 KOG1460|consensus 98.0 6.5E-06 1.4E-10 73.1 3.6 108 43-162 240-350 (407)
158 cd04649 LbH_THP_succinylT_puta 97.9 5.5E-05 1.2E-09 60.4 8.1 16 85-100 15-30 (147)
159 PLN02694 serine O-acetyltransf 97.9 7.5E-05 1.6E-09 65.6 9.5 69 70-147 167-246 (294)
160 COG1043 LpxA Acyl-[acyl carrie 97.9 4E-05 8.7E-10 65.9 7.6 54 69-124 39-101 (260)
161 PF00132 Hexapep: Bacterial tr 97.9 1.6E-05 3.4E-10 47.7 3.5 32 85-119 3-34 (36)
162 TIGR03536 DapD_gpp 2,3,4,5-tet 97.8 9.7E-05 2.1E-09 65.8 8.7 78 85-165 174-263 (341)
163 PF14602 Hexapep_2: Hexapeptid 97.8 2.8E-05 6.2E-10 47.4 3.8 34 83-121 1-34 (34)
164 PF00132 Hexapep: Bacterial tr 97.8 3E-05 6.4E-10 46.5 3.5 34 105-147 2-35 (36)
165 COG2171 DapD Tetrahydrodipicol 97.8 4.7E-05 1E-09 66.0 5.9 63 83-157 150-223 (271)
166 PRK05293 glgC glucose-1-phosph 97.8 0.00013 2.8E-09 63.9 8.6 60 85-161 310-373 (380)
167 KOG4750|consensus 97.6 0.00014 3E-09 62.3 5.6 59 104-165 168-231 (269)
168 TIGR02091 glgC glucose-1-phosp 97.5 0.00033 7.2E-09 60.8 7.5 35 133-167 312-349 (361)
169 TIGR01208 rmlA_long glucose-1- 97.4 0.00084 1.8E-08 58.4 9.1 64 72-147 257-321 (353)
170 TIGR02092 glgD glucose-1-phosp 97.3 0.00051 1.1E-08 60.1 6.3 28 133-160 306-335 (369)
171 PRK00725 glgC glucose-1-phosph 97.2 0.00069 1.5E-08 61.1 5.9 28 133-160 345-374 (425)
172 PRK00844 glgC glucose-1-phosph 97.2 0.00075 1.6E-08 60.3 5.7 46 104-160 315-362 (407)
173 PLN02241 glucose-1-phosphate a 97.1 0.0027 5.8E-08 57.4 9.1 16 84-99 332-347 (436)
174 KOG4750|consensus 97.0 0.0015 3.2E-08 56.2 5.9 55 83-147 168-234 (269)
175 COG1209 RfbA dTDP-glucose pyro 97.0 0.00019 4.1E-09 62.7 0.6 62 42-115 211-272 (286)
176 KOG1460|consensus 96.9 0.0019 4.1E-08 57.8 5.9 47 105-160 289-337 (407)
177 PRK02862 glgC glucose-1-phosph 96.9 0.0052 1.1E-07 55.5 8.7 52 83-147 324-393 (429)
178 KOG1462|consensus 96.8 0.0044 9.5E-08 56.7 7.3 56 85-160 353-410 (433)
179 COG0448 GlgC ADP-glucose pyrop 96.4 0.011 2.4E-07 54.0 7.0 46 72-121 299-345 (393)
180 KOG4042|consensus 94.2 0.035 7.6E-07 45.3 2.5 55 84-147 9-63 (190)
181 KOG1322|consensus 93.7 0.084 1.8E-06 47.7 4.0 18 105-122 271-288 (371)
182 COG4801 Predicted acyltransfer 86.5 2.3 4.9E-05 37.1 6.2 32 85-116 35-68 (277)
183 COG4801 Predicted acyltransfer 85.0 2.9 6.3E-05 36.4 6.2 36 83-122 16-51 (277)
184 PF07959 Fucokinase: L-fucokin 64.1 11 0.00024 34.5 4.4 13 135-147 305-317 (414)
185 TIGR01105 galF UTP-glucose-1-p 62.4 4 8.8E-05 35.4 1.3 23 43-65 253-275 (297)
186 PRK15480 glucose-1-phosphate t 61.9 4.1 8.8E-05 35.3 1.2 26 42-67 215-241 (292)
187 cd06425 M1P_guanylylT_B_like_N 61.3 4.1 8.9E-05 33.0 1.1 23 44-66 210-232 (233)
188 TIGR01207 rmlA glucose-1-phosp 59.0 4.8 0.0001 34.7 1.2 24 44-67 213-237 (286)
189 PRK10122 GalU regulator GalF; 58.9 5.1 0.00011 34.7 1.3 24 43-66 253-276 (297)
190 cd06428 M1P_guanylylT_A_like_N 58.0 5.3 0.00012 33.0 1.2 23 43-65 234-256 (257)
191 PF04519 Bactofilin: Polymer-f 57.1 31 0.00068 24.7 5.1 25 75-101 24-48 (101)
192 PF07959 Fucokinase: L-fucokin 55.9 17 0.00036 33.2 4.2 34 83-120 284-317 (414)
193 PRK13368 3-deoxy-manno-octulos 53.4 6.6 0.00014 31.8 1.0 20 45-64 217-236 (238)
194 cd02517 CMP-KDO-Synthetase CMP 52.7 7.2 0.00016 31.6 1.2 22 43-64 217-238 (239)
195 PF00483 NTP_transferase: Nucl 52.5 5.2 0.00011 32.3 0.3 25 43-67 220-246 (248)
196 PRK05450 3-deoxy-manno-octulos 52.4 6.5 0.00014 32.0 0.8 22 44-65 221-243 (245)
197 PRK00446 cyaY frataxin-like pr 50.5 12 0.00026 28.1 2.0 36 27-63 54-90 (105)
198 cd02538 G1P_TT_short G1P_TT_sh 47.8 9.5 0.0002 31.0 1.1 21 46-66 217-237 (240)
199 PRK13389 UTP--glucose-1-phosph 47.7 9.5 0.00021 33.1 1.2 23 43-65 256-278 (302)
200 cd06426 NTP_transferase_like_2 47.1 11 0.00023 29.9 1.3 22 42-63 199-220 (220)
201 cd02541 UGPase_prokaryotic Pro 43.7 12 0.00026 30.9 1.2 22 43-64 241-262 (267)
202 PF01491 Frataxin_Cyay: Fratax 40.6 24 0.00052 26.4 2.2 37 27-63 57-94 (109)
203 TIGR01099 galU UTP-glucose-1-p 38.7 16 0.00035 30.0 1.2 20 43-62 241-260 (260)
204 TIGR03421 FeS_CyaY iron donor 37.6 20 0.00044 26.7 1.5 36 27-63 52-88 (102)
205 PF09292 Neil1-DNA_bind: Endon 36.3 24 0.00052 22.3 1.4 22 19-40 15-36 (39)
206 cd06422 NTP_transferase_like_1 36.2 20 0.00043 28.6 1.3 19 44-62 203-221 (221)
207 cd04189 G1P_TT_long G1P_TT_lon 35.3 16 0.00035 29.3 0.7 24 44-67 211-234 (236)
208 TIGR03422 mito_frataxin fratax 31.7 27 0.00059 25.9 1.3 36 28-63 55-91 (97)
209 TIGR02623 G1P_cyt_trans glucos 31.3 23 0.0005 29.5 0.9 28 43-70 221-248 (254)
210 PF06521 PAR1: PAR1 protein; 28.4 24 0.00053 28.6 0.6 24 17-40 17-43 (158)
211 TIGR00062 L27 ribosomal protei 28.0 91 0.002 22.8 3.5 38 105-147 23-60 (83)
212 cd06915 NTP_transferase_WcbM_l 27.9 33 0.00071 26.8 1.3 19 44-62 204-222 (223)
213 PLN02474 UTP--glucose-1-phosph 26.8 56 0.0012 30.8 2.7 18 84-101 422-439 (469)
214 TIGR01479 GMP_PMI mannose-1-ph 25.9 90 0.0019 28.8 3.9 32 41-72 259-290 (468)
215 PRK05435 rpmA 50S ribosomal pr 24.5 1.4E+02 0.003 21.8 3.9 38 105-147 23-60 (82)
216 PF01502 PRA-CH: Phosphoribosy 23.4 17 0.00038 26.0 -1.0 40 7-46 4-43 (75)
217 cd02524 G1P_cytidylyltransfera 21.9 41 0.0009 27.6 0.8 28 43-70 222-249 (253)
218 PRK15313 autotransport protein 20.3 2.1E+02 0.0045 29.6 5.4 67 80-147 182-255 (955)
219 CHL00121 rpl27 ribosomal prote 20.2 1.5E+02 0.0032 21.9 3.3 38 105-147 23-60 (86)
No 1
>KOG3121|consensus
Probab=99.97 E-value=7.4e-32 Score=214.28 Aligned_cols=110 Identities=50% Similarity=0.842 Sum_probs=105.8
Q ss_pred CCccceeeCCCceEEeecccceeecccccceeeeecCCCCceeeeccceecccCCchhhhhhccccccCCeeecCCeEec
Q psy2215 1 MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAG 80 (172)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G 80 (172)
|||.+.|||++||+|| ++|||++|+..|+|
T Consensus 1 Melp~~yY~k~Ey~eT--------------------------------------------------asGNKVsr~~vlcG 30 (184)
T KOG3121|consen 1 MELPIVYYDKTEYAET--------------------------------------------------ASGNKVSRKHVLCG 30 (184)
T ss_pred CCCcceeecchhhhhh--------------------------------------------------ccCCcccceeEeec
Confidence 9999999999999999 89999999999999
Q ss_pred ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEee---CCCeEECCCcEEEecCCCeEECC
Q psy2215 81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP---GSTVYLVFTASVRLKSPFAQIYS 157 (172)
Q Consensus 81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p---Gd~V~IG~navI~i~~pga~IGs 157 (172)
+|||.|.|+++++++++||||+++|+||+||+++.+++|+|+.|+|+||..++| ||||+|++.|++. +++||+
T Consensus 31 sQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn----AAqIgs 106 (184)
T KOG3121|consen 31 SQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN----AAQIGS 106 (184)
T ss_pred cceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee----hhhhee
Confidence 999999999999999999999999999999999999999999999999987766 9999999999999 999999
Q ss_pred CceeCCe
Q psy2215 158 YIIAPCP 164 (172)
Q Consensus 158 ~v~iga~ 164 (172)
++++|.+
T Consensus 107 yVh~Gkn 113 (184)
T KOG3121|consen 107 YVHLGKN 113 (184)
T ss_pred eeEeccc
Confidence 9996654
No 2
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=129.74 Aligned_cols=86 Identities=30% Similarity=0.323 Sum_probs=77.3
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
....|++.|.|.| +++|+.++.|+++++||||..+|+||++|+|++||+||... ++++.+||+|+||++|+|+
T Consensus 16 ~~a~Va~~A~viG--dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~-----~~p~~IG~~vtIGH~aivH 88 (176)
T COG0663 16 PTAFVAPSATVIG--DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADP-----GYPVTIGDDVTIGHGAVVH 88 (176)
T ss_pred CceEECCCCEEEE--eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCC-----CCCeEECCCcEEcCccEEE
Confidence 4467899999999 79999999999999999999999999999999999999863 3567889999999999999
Q ss_pred ecCCCeEECCCceeCCe
Q psy2215 148 LKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 148 i~~pga~IGs~v~iga~ 164 (172)
||+||++|.+|-.
T Consensus 89 ----Gc~Ig~~~lIGmg 101 (176)
T COG0663 89 ----GCTIGDNVLIGMG 101 (176)
T ss_pred ----EeEECCCcEEecC
Confidence 8999999885433
No 3
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.63 E-value=3.4e-15 Score=117.77 Aligned_cols=81 Identities=59% Similarity=0.969 Sum_probs=71.0
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce---EEeeCCCeEECCC
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF---LVYPGSTVYLVFT 143 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~---~~~pGd~V~IG~n 143 (172)
..|++|++++.|.|.++|.|++++.|+++|+|+|+..++.||++|.|+++|+|+++.+...... .+.+||+++||++
T Consensus 5 ~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~ 84 (161)
T cd03359 5 ASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGEN 84 (161)
T ss_pred cCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCC
Confidence 7899999999999999999999999999999999988999999999999999998765433322 2456999999999
Q ss_pred cEEE
Q psy2215 144 ASVR 147 (172)
Q Consensus 144 avI~ 147 (172)
|++.
T Consensus 85 ~~i~ 88 (161)
T cd03359 85 CVVN 88 (161)
T ss_pred CEEE
Confidence 9887
No 4
>PLN02472 uncharacterized protein
Probab=99.40 E-value=2.4e-12 Score=109.45 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=70.7
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce--EEeeCCCeEECCCcE
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF--LVYPGSTVYLVFTAS 145 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~--~~~pGd~V~IG~nav 145 (172)
....+.+.+.+.| +++||+++.|+++++|+||..+|.||++|.|++||+|++..... .++ .+.+|++|+||++|+
T Consensus 64 ~~~~I~p~a~i~G--~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~-~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 64 VDAYVAPNVVLAG--QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSP-TGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred CCCEECCCCEEec--CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccc-cCCCCCcEECCCCEECCCcE
Confidence 5667888999999 69999999999999999999999999999999999999754211 111 256699999999998
Q ss_pred EEecCCCeEECCCceeC
Q psy2215 146 VRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 146 I~i~~pga~IGs~v~ig 162 (172)
|+ +++||+++.+|
T Consensus 141 L~----~~~Igd~v~IG 153 (246)
T PLN02472 141 LR----SCTIEPECIIG 153 (246)
T ss_pred EC----CeEEcCCCEEC
Confidence 88 66666665543
No 5
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.36 E-value=4.3e-12 Score=104.02 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=65.2
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV 146 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI 146 (172)
..+..|++.+.|.| ++.||+++.|+++|+|+||..++.||++|.||+||+|+... +..+.+|++++||++|+|
T Consensus 12 ~~~~~I~~~a~I~G--~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----~~~siIg~~~~Ig~~a~I 84 (192)
T TIGR02287 12 HPEAYVHPTAVLIG--DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----GQDTVVEENGHVGHGAIL 84 (192)
T ss_pred CCCcEECCCCEEEe--eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----CCCCeECCCCEECCCCEE
Confidence 35667888999998 69999999999999999999999999999999999997531 111345777777777776
Q ss_pred EecCCCeEECCCcee
Q psy2215 147 RLKSPFAQIYSYIIA 161 (172)
Q Consensus 147 ~i~~pga~IGs~v~i 161 (172)
+ ++.|++++.+
T Consensus 85 ~----~siIg~~~~I 95 (192)
T TIGR02287 85 H----GCIVGRNALV 95 (192)
T ss_pred c----CCEECCCCEE
Confidence 6 4555544443
No 6
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.33 E-value=4.3e-12 Score=106.59 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=68.6
Q ss_pred eeeccceecccCCchhhhhhccccccCC---------------------eeecCCeEecccceEECCCeEECCCcEEcCC
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGN---------------------KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD 101 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn---------------------~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd 101 (172)
-.+.+|+|.|+ |++|+++...+.+. .|.+.+.+.| ++.||.++.|+++++|.++
T Consensus 42 ~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g--~v~IG~~~~I~~~~~I~~~ 116 (231)
T TIGR03532 42 SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD--QVIIGDNAVIMMGAVINIG 116 (231)
T ss_pred cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC--CeEECCCCEEecCcccCCC
Confidence 45678999999 99999888887663 3344444444 4666666666666666544
Q ss_pred CcceEECCCCeeCCCCEEccCCcc-----CCCc------------eEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215 102 LANIRTGRYCIISKGVVIRPPFKK-----FAKG------------FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 102 l~~V~IG~~c~Ig~navI~p~~~~-----~~~g------------~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~ 164 (172)
+.||++|.|+++++|++.... ...+ ..+.+|++|+||++++|. ++++||+++.+++.
T Consensus 117 ---~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~---~g~~Ig~~~~Igag 190 (231)
T TIGR03532 117 ---AEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL---EGVRVGKGAVVAAG 190 (231)
T ss_pred ---eEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc---CCCEECCCCEECCC
Confidence 455555555444444322110 0000 013458888888888887 78888888886543
No 7
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.30 E-value=2.3e-11 Score=100.06 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=63.2
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV 146 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI 146 (172)
....+|++.+.|.| ++.||.++.|+++|+|+||..++.||++|.||++|+|+.... ....+|++++||++|++
T Consensus 14 ~~~a~I~~~a~I~g--~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----~~siIg~~~~Ig~~a~i 86 (196)
T PRK13627 14 HPTAFVHPSAVLIG--DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----TDTIVGENGHIGHGAIL 86 (196)
T ss_pred CCCeEECCCCEEEC--ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----CCCEECCCCEECCCcEE
Confidence 35567888899998 589999999999999999988899999999999999986532 11334666666666665
Q ss_pred EecCCCeEECCCcee
Q psy2215 147 RLKSPFAQIYSYIIA 161 (172)
Q Consensus 147 ~i~~pga~IGs~v~i 161 (172)
+ +++||+++.+
T Consensus 87 ~----g~vIG~~v~I 97 (196)
T PRK13627 87 H----GCVIGRDALV 97 (196)
T ss_pred e----eEEECCCCEE
Confidence 5 4444444443
No 8
>PLN02296 carbonate dehydratase
Probab=99.30 E-value=2.1e-11 Score=104.88 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=66.9
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc-eEEeeCCCeEECCCcEE
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG-FLVYPGSTVYLVFTASV 146 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g-~~~~pGd~V~IG~navI 146 (172)
.+..|.+.+.+.| ++.||.++.|+++|+|+|+..++.||++|.|+++|+|+......... ..+.+|++|+||++|+|
T Consensus 57 ~~~~I~p~A~V~G--~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 57 KDAFVAPSASVIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred CCCEECCCcEEEc--ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 5667888899988 69999999999999999998899999999999999998543211111 12456888888888877
Q ss_pred EecCCCeEECCCce
Q psy2215 147 RLKSPFAQIYSYII 160 (172)
Q Consensus 147 ~i~~pga~IGs~v~ 160 (172)
+ +++||++|.
T Consensus 135 ~----g~~Igd~v~ 144 (269)
T PLN02296 135 H----GCTVEDEAF 144 (269)
T ss_pred c----CCEECCCcE
Confidence 6 555555554
No 9
>PRK10502 putative acyl transferase; Provisional
Probab=99.27 E-value=4.8e-11 Score=96.35 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=80.7
Q ss_pred hhhhccccc-cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc------eE
Q psy2215 59 ILVYSGAVA-SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG------FL 131 (172)
Q Consensus 59 Ll~~~~~~~-~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g------~~ 131 (172)
||.+.+... .+..|...+.|.++.++.||+++.|++++.|.. ...++||++|.|++++.|....+.+... -+
T Consensus 46 ~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~-~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~ 124 (182)
T PRK10502 46 LLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN-LGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAP 124 (182)
T ss_pred HHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc-cCceEECCCcEECCCeEEECCCCCCcCCCcccccCC
Confidence 555554433 555677778888778999999999999999983 5579999999999999998665433111 12
Q ss_pred EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
+.+||+|+||++|+|. |+++||+++.+++..
T Consensus 125 i~Igd~~~Ig~~a~I~---~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 125 IVIGEGCWLAADVFVA---PGVTIGSGAVVGARS 155 (182)
T ss_pred EEEcCCcEEcCCCEEc---CCCEECCCCEECCCC
Confidence 4669999999999999 999999999976543
No 10
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.24 E-value=7.2e-11 Score=97.86 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=74.9
Q ss_pred hccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCc----eEE
Q psy2215 62 YSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKG----FLV 132 (172)
Q Consensus 62 ~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g----~~~ 132 (172)
+.+....+..|.+...+....|+.||++++|+.+++|.+ ..+++||++|.|+++|.|....+.+ ..+ -++
T Consensus 54 ~~~~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d-~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi 132 (203)
T PRK09527 54 MFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVD-DYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPI 132 (203)
T ss_pred hhhhcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEec-CCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCe
Confidence 333333455565555553347999999999999999984 4679999999999999998543221 112 125
Q ss_pred eeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 133 YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 133 ~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
.+||+|+||++|+|. ++++||+++.+++..
T Consensus 133 ~IGd~v~IG~~~~I~---~gv~IG~~~vIgags 162 (203)
T PRK09527 133 TIGNNVWIGSHVVIN---PGVTIGDNSVIGAGS 162 (203)
T ss_pred EECCCcEECCCCEEc---CCCEECCCCEECCCC
Confidence 679999999999999 999999999966543
No 11
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.23 E-value=9.3e-11 Score=95.41 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=66.0
Q ss_pred ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC-----c----eEEeeCCCeEECCCcEEEecCC
Q psy2215 81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK-----G----FLVYPGSTVYLVFTASVRLKSP 151 (172)
Q Consensus 81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~-----g----~~~~pGd~V~IG~navI~i~~p 151 (172)
..++.||++++|+.+|+|. |..+|+||++|.|+++|+|....+.... + -++.+||+|+||++|+|. |
T Consensus 71 g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~---~ 146 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVIN---P 146 (183)
T ss_pred cCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEEC---C
Confidence 4689999999999999995 6678999999999999999865543321 1 125669999999999999 9
Q ss_pred CeEECCCceeCCe
Q psy2215 152 FAQIYSYIIAPCP 164 (172)
Q Consensus 152 ga~IGs~v~iga~ 164 (172)
+++||+++++++.
T Consensus 147 gv~IG~~~vIgag 159 (183)
T PRK10092 147 GVTIGDNVVVASG 159 (183)
T ss_pred CCEECCCCEECCC
Confidence 9999999996554
No 12
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.22 E-value=9.6e-11 Score=86.55 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc-e-----EEeeCCCeEECCCcEEEecCCCeEE
Q psy2215 82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG-F-----LVYPGSTVYLVFTASVRLKSPFAQI 155 (172)
Q Consensus 82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g-~-----~~~pGd~V~IG~navI~i~~pga~I 155 (172)
.|+.||+++.|+++++|. +...++||++|.|++++.|....+.+... + ++.+||+|+||.++.|. ++++|
T Consensus 2 ~~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~---~g~~I 77 (107)
T cd05825 2 WNLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVG---PGVTI 77 (107)
T ss_pred ceEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEEC---CCCEE
Confidence 589999999999999998 34569999999999999998655433222 1 24569999999999999 99999
Q ss_pred CCCceeCCeE
Q psy2215 156 YSYIIAPCPL 165 (172)
Q Consensus 156 Gs~v~iga~i 165 (172)
|+++.+++..
T Consensus 78 g~~~~i~~gs 87 (107)
T cd05825 78 GEGAVVGARS 87 (107)
T ss_pred CCCCEECCCC
Confidence 9999965543
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.16 E-value=1e-10 Score=105.11 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=60.2
Q ss_pred eeccce--ecccCCchhhhhhcccccc---------CC-eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215 44 FLSRGW--WFESKSSHKILVYSGAVAS---------GN-KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC 111 (172)
Q Consensus 44 ~~~~g~--W~D~~~p~~Ll~~~~~~~~---------gn-~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c 111 (172)
+..+++ |+|.++|+++++++.+... +. .+.+.+...+ .++.|++++.|+++|+|.++ +.||++|
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~-~~v~ig~~~~I~~~~~I~~~---~~Ig~~~ 293 (459)
T PRK14355 218 FPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYID-RGVVIGRDTTIYPGVCISGD---TRIGEGC 293 (459)
T ss_pred EEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEEC-CCeEEcCCCEEeCCcEEeCC---CEECCCC
Confidence 344566 9999999999888654432 21 2233333333 36788888888888888876 7888888
Q ss_pred eeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 112 IISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 112 ~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
.|+++|+|+. ..+|++|+|+++|+|.
T Consensus 294 ~I~~~~~I~~----------~~Ig~~~~I~~~~~i~ 319 (459)
T PRK14355 294 TIEQGVVIKG----------CRIGDDVTVKAGSVLE 319 (459)
T ss_pred EECCCCEEeC----------CEEcCCCEECCCeEEe
Confidence 8888888864 2235555555555554
No 14
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.16 E-value=4e-10 Score=88.13 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=45.5
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP 121 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p 121 (172)
..+..+.+.+.|.| ++.||+++.|+++|+|+++..++.||++|.|+++|+|+.
T Consensus 4 ~~~~~i~~~a~i~g--~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~ 56 (155)
T cd04745 4 DPSSFVHPTAVLIG--DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHG 56 (155)
T ss_pred CCCeEECCCCEEEc--cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEee
Confidence 34555777888888 799999999999999998877899999999999999954
No 15
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.15 E-value=4.4e-10 Score=89.35 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc---------------CCCce---
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK---------------FAKGF--- 130 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~---------------~~~g~--- 130 (172)
+..|++.+.|.| ++.||+++.|+++++|..+..++.||++|.|+++|+|+.+... +..+.
T Consensus 5 ~~~I~~~a~i~g--~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~ 82 (164)
T cd04646 5 GAVVCQESEIRG--DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE 82 (164)
T ss_pred CcEECCCCEEcC--ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence 445667777776 7899999999999999866567999999999999999865321 01111
Q ss_pred EEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215 131 LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 131 ~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~ 164 (172)
.+.+||+|+||++|+|. ++++||+++.+|+.
T Consensus 83 ~~~IGd~~~Ig~~a~I~---~gv~Ig~~~~Igag 113 (164)
T cd04646 83 ALKIGNNNVFESKSFVG---KNVIITDGCIIGAG 113 (164)
T ss_pred eeEECCCCEEeCCCEEC---CCCEECCCCEEeCC
Confidence 13448888888888887 78888888886544
No 16
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.14 E-value=5e-10 Score=88.95 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=65.0
Q ss_pred ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC---------ceEEeeCCCeEECCCcEEEecCC
Q psy2215 81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK---------GFLVYPGSTVYLVFTASVRLKSP 151 (172)
Q Consensus 81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~---------g~~~~pGd~V~IG~navI~i~~p 151 (172)
..++.||+++.|+++++|. +..+++||++|.|+++|.|.+..+.+.. +-++.+||+|+||++|+|. +
T Consensus 60 ~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~---~ 135 (169)
T cd03357 60 GYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIIL---P 135 (169)
T ss_pred CCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEe---C
Confidence 3579999999999999987 3356999999999999999876543211 1125669999999999999 9
Q ss_pred CeEECCCceeCCeE
Q psy2215 152 FAQIYSYIIAPCPL 165 (172)
Q Consensus 152 ga~IGs~v~iga~i 165 (172)
+++||+++.+|+..
T Consensus 136 gv~Ig~~~~Vgaga 149 (169)
T cd03357 136 GVTIGDNSVIGAGS 149 (169)
T ss_pred CCEECCCCEECCCC
Confidence 99999999976543
No 17
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.8e-10 Score=101.99 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=69.0
Q ss_pred CceeeeccceecccCCchhhhhhccccccCCeeecCCeEeccc----ceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215 40 GAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQ----NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK 115 (172)
Q Consensus 40 ~~~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~----nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~ 115 (172)
...-+..+|.|.|+++|||++.++........-.......... .+.+.+.++|+++|+|+.. +.||++|+||+
T Consensus 208 ~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~---~~i~~~~~ig~ 284 (358)
T COG1208 208 DVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG---ALIGPYTVIGE 284 (358)
T ss_pred cEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC---CEECCCcEECC
Confidence 3556788899999999999999998877533211111111000 0444555555555555554 45555566666
Q ss_pred CCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 116 GVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 116 navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
||.|+...+. ....+.|+|.||+++.|. ++.|+++|.+|+
T Consensus 285 ~~~I~~~~~i----~~Sii~~~~~i~~~~~i~----~sIi~~~~~ig~ 324 (358)
T COG1208 285 GVTIGNGVEI----KNSIIMDNVVIGHGSYIG----DSIIGENCKIGA 324 (358)
T ss_pred CCEECCCcEE----EeeEEEcCCEECCCCEEe----eeEEcCCcEECC
Confidence 6666655321 012358899999999999 666666666664
No 18
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.13 E-value=6.7e-10 Score=87.36 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=52.5
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV 146 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI 146 (172)
..+..+++.+.|.| ++.||+++.|+++++|+++..++.||++|.|+++|.|+.... ..+.+|+++.|+++|.+
T Consensus 4 ~~~~~i~~~~~i~~--~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~-----~~~~Ig~~~~I~~~~~i 76 (154)
T cd04650 4 SPKAYVHPTSYVIG--DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHG-----YPTEIGDYVTIGHNAVV 76 (154)
T ss_pred CCCeEECCCCEEEe--eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCC-----CCeEECCCCEECCCcEE
Confidence 45566777888887 588999999999999998766789999999999999886421 11333445555555544
Q ss_pred E
Q psy2215 147 R 147 (172)
Q Consensus 147 ~ 147 (172)
+
T Consensus 77 ~ 77 (154)
T cd04650 77 H 77 (154)
T ss_pred E
Confidence 4
No 19
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.12 E-value=3.5e-10 Score=98.97 Aligned_cols=107 Identities=9% Similarity=0.093 Sum_probs=73.6
Q ss_pred eeccceecccCCchhhhhhccccccCC----------eeecCCeEecc----cceEECCCeEECCCcEEcCCCcceEECC
Q psy2215 44 FLSRGWWFESKSSHKILVYSGAVASGN----------KVSRKSLVAGA----QNIVLTGKVIIQCDAVLRGDLANIRTGR 109 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~~~~~~~gn----------~Is~~a~I~G~----~nI~Igg~v~I~~~avIrGdl~~V~IG~ 109 (172)
+..+|+|.|.++|++++.++...+... ++..++.+.|+ ++..| +++.|+++|+|++.+.+..||+
T Consensus 235 ~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~ 313 (380)
T PRK05293 235 YPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQ 313 (380)
T ss_pred EEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcC
Confidence 456789999999999998875444321 12222333331 23344 3567888888887666778999
Q ss_pred CCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCcee
Q psy2215 110 YCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIA 161 (172)
Q Consensus 110 ~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~i 161 (172)
+|.|+++|+|..+ .++++|.||++|.|. |+++++.|++++.+
T Consensus 314 ~~~I~~~~~i~~s----------vi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 357 (380)
T PRK05293 314 GVQVGEGSVVKDS----------VIMPGAKIGENVVIERAIIGENAVIGDGVII 357 (380)
T ss_pred CCEECCCCEEECC----------EEeCCCEECCCeEEeEEEECCCCEECCCCEE
Confidence 9999998888764 358899999999999 66666666666553
No 20
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.12 E-value=3.3e-10 Score=98.37 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=47.0
Q ss_pred eeeccceecccCCchhhhhhccccccCCe-----eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCC
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGNK-----VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGV 117 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~-----Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~na 117 (172)
.+...|+|.|.++|+||+.++...+.... +..++.+.| .+.|++++.| +++.|.|+ +.||++|.|+ ++
T Consensus 211 ~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~--~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~ 283 (353)
T TIGR01208 211 GSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRG--RVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NS 283 (353)
T ss_pred EEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcC--CEEECCCCEE-eCCEEECC---cEECCCCEEc-Cc
Confidence 45668899999999999998888776421 233445544 3566666666 55666554 5666666654 44
Q ss_pred EEccC
Q psy2215 118 VIRPP 122 (172)
Q Consensus 118 vI~p~ 122 (172)
+|.+.
T Consensus 284 ~i~~~ 288 (353)
T TIGR01208 284 YIGPY 288 (353)
T ss_pred EECCC
Confidence 44443
No 21
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.11 E-value=9.9e-10 Score=85.45 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
...+++++.|.| ++.||+++.|+++++|+++..++.||++|.|+++|+|..... ....+|+++.|+.+|+|.
T Consensus 5 ~~~i~~~a~i~g--~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-----~~~~Ig~~~~I~~~~~i~ 76 (153)
T cd04645 5 SAFIAPNATVIG--DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG-----YPTIIGDNVTVGHGAVLH 76 (153)
T ss_pred CeEECCCCEEEE--eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----CCeEEcCCcEECCCcEEe
Confidence 345778889998 699999999999999999888999999999999999987521 113345556665555555
No 22
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.03 E-value=1.6e-09 Score=95.95 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=62.6
Q ss_pred eccce--ecccCCchhhhhhccccc---------cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCee
Q psy2215 45 LSRGW--WFESKSSHKILVYSGAVA---------SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCII 113 (172)
Q Consensus 45 ~~~g~--W~D~~~p~~Ll~~~~~~~---------~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~I 113 (172)
..+++ |.|.++|+++..++.+.. .+..+...+...-...+.||.++.|+++|+|.++ +.||++|.|
T Consensus 212 ~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I 288 (451)
T TIGR01173 212 QVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGK---VKIGDDVVI 288 (451)
T ss_pred EcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCc---eEECCCCEE
Confidence 34565 999999999876644322 2222222222222335677888888888888765 777777777
Q ss_pred CCCCEEccCCccCCCceE---------EeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 114 SKGVVIRPPFKKFAKGFL---------VYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 114 g~navI~p~~~~~~~g~~---------~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+++|+|+... . ..+.. ..+|++|.||++|.|. +++.|+++|.++
T Consensus 289 ~~~~~i~~~~-i-~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~---~~~~i~~~~~Ig 341 (451)
T TIGR01173 289 GPGCVIKNSV-I-GSNVVIKAYSVLEGSEIGEGCDVGPFARLR---PGSVLGAGVHIG 341 (451)
T ss_pred CCCcEEeeeE-e-cCCCEEeeecEEecccccCCcEECCeeEEC---CCCEECCCcEEc
Confidence 7777776321 0 00000 1236666666666665 444444444433
No 23
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.03 E-value=2e-09 Score=88.01 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=81.0
Q ss_pred ecccCCchhhhhhcccccc-------CCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEc
Q psy2215 50 WFESKSSHKILVYSGAVAS-------GNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 50 W~D~~~p~~Ll~~~~~~~~-------gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~ 120 (172)
|+.+..+.+..-++.+... +-.|...+.|.|. ..|+||.++-|+++|+|+++- .|+.||++|.||.+++||
T Consensus 9 ~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH 88 (176)
T COG0663 9 GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH 88 (176)
T ss_pred CCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE
Confidence 3444444444444444443 3345677888885 679999999999999999864 599999999999999999
Q ss_pred cCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215 121 PPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH 166 (172)
Q Consensus 121 p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~ 166 (172)
.. .+||+|.||=||+|. .||.||+++.+||...
T Consensus 89 Gc----------~Ig~~~lIGmgA~vl---dga~IG~~~iVgAgal 121 (176)
T COG0663 89 GC----------TIGDNVLIGMGATVL---DGAVIGDGSIVGAGAL 121 (176)
T ss_pred Ee----------EECCCcEEecCceEe---CCcEECCCcEEccCCc
Confidence 83 469999999999999 7799999999777643
No 24
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.03 E-value=1.5e-09 Score=96.72 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=67.4
Q ss_pred cceecccCCchhhhhhccccccCCee----------------ecCCeEecc-------cceEECCCeEECCCcEEcCCCc
Q psy2215 47 RGWWFESKSSHKILVYSGAVASGNKV----------------SRKSLVAGA-------QNIVLTGKVIIQCDAVLRGDLA 103 (172)
Q Consensus 47 ~g~W~D~~~p~~Ll~~~~~~~~gn~I----------------s~~a~I~G~-------~nI~Igg~v~I~~~avIrGdl~ 103 (172)
+|+|.|.++|++++.++...+.+..- ...+.+.+. .+..|+.++.|+ ++.|+
T Consensus 256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~---- 330 (407)
T PRK00844 256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR---- 330 (407)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE----
Confidence 69999999999999987776643211 011222221 133444444444 44444
Q ss_pred ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCC
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPC 163 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga 163 (172)
+..||++|.|+++|.|... .++++|.||++|.|. |+++++.|+++++++.
T Consensus 331 ~svIg~~~~I~~~~~i~~s----------ii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 331 NSVLSPNVVVESGAEVEDS----------VLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred cCEECCCCEECCCCEEeee----------EECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 3667888888887777653 369999999999999 7777777777776655
No 25
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=1.7e-09 Score=96.28 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=14.4
Q ss_pred ceecccCCchhhhhhcc
Q psy2215 48 GWWFESKSSHKILVYSG 64 (172)
Q Consensus 48 g~W~D~~~p~~Ll~~~~ 64 (172)
++|.|.++|+||+.++.
T Consensus 224 ~~~~~I~t~~dl~~a~~ 240 (446)
T PRK14353 224 DEVRGINSRAELAEAEA 240 (446)
T ss_pred hhcccCCCHHHHHHHHH
Confidence 56999999999987764
No 26
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.98 E-value=5.9e-09 Score=70.35 Aligned_cols=73 Identities=21% Similarity=0.145 Sum_probs=58.8
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~ 164 (172)
.|++++.|+++++|.+. +.||++|.|+++|+|++..... .-....+|++++||++|+|. ++++||+++.+++.
T Consensus 2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~ig~~~~v~~~~~i~---~~~~ig~~~~i~~~ 74 (78)
T cd00208 2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATGPN-EKNPTIIGDNVEIGANAVIH---GGVKIGDNAVIGAG 74 (78)
T ss_pred EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccCCC-ccCCcEECCCcEECCCCEEe---CCCEECCCCEECcC
Confidence 57889999999999875 9999999999999999763211 11125569999999999999 88999999997654
No 27
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.97 E-value=4.9e-09 Score=81.00 Aligned_cols=76 Identities=22% Similarity=0.152 Sum_probs=42.7
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC------CCce---EEeeCCCeEECCCcEEEecCCCe
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF------AKGF---LVYPGSTVYLVFTASVRLKSPFA 153 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~------~~g~---~~~pGd~V~IG~navI~i~~pga 153 (172)
++.++.++.|+++++|..+ ++||++|.|++++.|..+...- +... ...+|++|+||++|+|. +++
T Consensus 96 ~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~---~~~ 169 (197)
T cd03360 96 SAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATII---QGV 169 (197)
T ss_pred CCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEc---CCC
Confidence 3555666666666666544 5555555555555554332210 0000 03347888888888877 778
Q ss_pred EECCCceeCCe
Q psy2215 154 QIYSYIIAPCP 164 (172)
Q Consensus 154 ~IGs~v~iga~ 164 (172)
+||+++.+++.
T Consensus 170 ~ig~~~~v~~~ 180 (197)
T cd03360 170 TIGAGAIIGAG 180 (197)
T ss_pred EECCCCEECCC
Confidence 88888775543
No 28
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.97 E-value=7.8e-09 Score=81.97 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=60.6
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCc----c-----CCCc-e---EEe
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFK----K-----FAKG-F---LVY 133 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~----~-----~~~g-~---~~~ 133 (172)
.+..|++.+.|.+ ++.||++++|+++++|+++. .++.||++|.|++++.|+.... . +..+ . .+.
T Consensus 7 ~~~~I~~~a~i~~--~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 7 PSAYVHPTAVVIG--DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred CCeEECCCCEEEe--eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 4556677777776 68888999999999888753 3688888888888888853210 0 0000 0 034
Q ss_pred eCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 134 PGSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 134 pGd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
+||+|+||++|.|. +++||+++.+|+
T Consensus 85 Ig~~~~Ig~~~~I~----~~~Ig~~~~Ig~ 110 (167)
T cd00710 85 IGDNCFIGFRSVVF----NAKVGDNCVIGH 110 (167)
T ss_pred ECCCCEECCCCEEE----CCEECCCCEEcC
Confidence 47777777777777 667777766443
No 29
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.96 E-value=8.1e-09 Score=74.51 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=57.5
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC----------ceEEeeCCCeEECCCcEEEecCCC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK----------GFLVYPGSTVYLVFTASVRLKSPF 152 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~----------g~~~~pGd~V~IG~navI~i~~pg 152 (172)
++.||+++.|+++++|.++ .++.||++|.|+++|+|......... .....+|++++||+++.+. ++
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~---~~ 76 (109)
T cd04647 1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVIL---PG 76 (109)
T ss_pred CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEc---CC
Confidence 4789999999999999974 46999999999999999876332211 1113458888888888887 67
Q ss_pred eEECCCceeC
Q psy2215 153 AQIYSYIIAP 162 (172)
Q Consensus 153 a~IGs~v~ig 162 (172)
+.|++++.++
T Consensus 77 ~~ig~~~~i~ 86 (109)
T cd04647 77 VTIGDGAVVG 86 (109)
T ss_pred CEECCCCEEC
Confidence 7777777744
No 30
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=2.2e-09 Score=95.83 Aligned_cols=111 Identities=12% Similarity=0.055 Sum_probs=65.3
Q ss_pred eecccCCchhhhhhccccccCC---eeecCCeEecccceEECCCeEECCCcEEcCCCc---ceEECCCCeeCCCCEEccC
Q psy2215 49 WWFESKSSHKILVYSGAVASGN---KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA---NIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 49 ~W~D~~~p~~Ll~~~~~~~~gn---~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~---~V~IG~~c~Ig~navI~p~ 122 (172)
.|+|+++|+||+.++.+..... .+.....|...+++.+++++.|+++++|.++.. ++.||++|.|+++|+|...
T Consensus 226 ~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~ 305 (456)
T PRK14356 226 NLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDA 305 (456)
T ss_pred eEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEee
Confidence 5899999999988776655321 122344555556677777777777777776531 4667777777766665531
Q ss_pred -----CccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 123 -----FKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 123 -----~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
...-+... ...+|++|.||+++.|. |++.||+++.+|
T Consensus 306 ~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~---~~~~ig~~~~ig 349 (456)
T PRK14356 306 VVSSGATIHSFSHLEGAEVGDGCSVGPYARLR---PGAVLEEGARVG 349 (456)
T ss_pred EECCCCEEeeeEEEcccceecccEECCceEEC---CCCEECCCCEec
Confidence 10000000 01236677777777766 555555555544
No 31
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.91 E-value=7.6e-09 Score=87.05 Aligned_cols=51 Identities=18% Similarity=0.036 Sum_probs=22.7
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
+.||++|.|+++|+|++....- . -.+.+||+|.|++++.|. .++.||+++.
T Consensus 78 v~IG~~~~Ig~~~~I~~~~~~~-~-~~~~IG~~~~I~~~~~I~---~~~~IG~~~~ 128 (254)
T cd03351 78 LEIGDNNTIREFVTIHRGTAQG-G-GVTRIGNNNLLMAYVHVA---HDCVIGNNVI 128 (254)
T ss_pred EEECCCCEECCccEEeccccCC-C-CceEECCCCEECCCCEEC---CCCEECCCcE
Confidence 4455555555555554432110 0 013445555555555553 2444444444
No 32
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.90 E-value=1e-08 Score=80.44 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=58.9
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-CccCCC--------------------c----eEEeeCCCe
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-FKKFAK--------------------G----FLVYPGSTV 138 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-~~~~~~--------------------g----~~~~pGd~V 138 (172)
+.||.++.|+++..+.+. ..++||++|.|++++.|... .+.+.. . -.+.+||+|
T Consensus 2 ~~iG~~s~i~~~~~~~~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 80 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGG-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV 80 (145)
T ss_pred EEEeCceeeCCCCceEeC-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence 678999999994444333 57999999999999999877 443321 0 013449999
Q ss_pred EECCCcEEEecCCCeEECCCceeCCe
Q psy2215 139 YLVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 139 ~IG~navI~i~~pga~IGs~v~iga~ 164 (172)
+||++|+|. ++++||+++++++.
T Consensus 81 ~Ig~~~~i~---~gv~Ig~~~vIgag 103 (145)
T cd03349 81 WIGHGATIL---PGVTIGDGAVIAAG 103 (145)
T ss_pred EECCCCEEe---CCCEECCCCEECCC
Confidence 999999998 89999999997664
No 33
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=1.4e-08 Score=79.55 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=36.5
Q ss_pred ecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 73 SRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 73 s~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
.+.+.+.+ .++|++++.|++++.|+++ +.||++|.|++++.|+++ ..+|+++.||+++.|.
T Consensus 9 ~~~~~i~~--~v~ig~~~~I~~~a~i~~~---v~Ig~~~~I~~~~~i~~~---------~~Ig~~~~I~~~~~i~ 69 (163)
T cd05636 9 EEGVTIKG--PVWIGEGAIVRSGAYIEGP---VIIGKGCEIGPNAYIRGY---------TVLGDGCVVGNSVEVK 69 (163)
T ss_pred CCCCEECC--CeEEcCCCEECCCCEEeCC---eEECCCCEECCCCEEcCC---------CEECCCCEECCCcEEe
Confidence 33445554 3667777777777777665 667777777666666654 2334455555544444
No 34
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.89 E-value=7.9e-09 Score=87.86 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=48.2
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc--CCCc-eEEeeCCCeEECCCcE
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK--FAKG-FLVYPGSTVYLVFTAS 145 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~--~~~g-~~~~pGd~V~IG~nav 145 (172)
+..|.+.+.|.+ +++||+++.|+++++|.++ +.||++|.|+++|+|++.... |.+. -.+.+||+++|+++|+
T Consensus 20 ~v~Igp~~~I~~--~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~ 94 (262)
T PRK05289 20 NVEIGPFCVIGP--NVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVT 94 (262)
T ss_pred CCEECCCeEECC--CCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeE
Confidence 333444444432 5777777777777777776 888888888888888764322 1211 1245688888888887
Q ss_pred EE
Q psy2215 146 VR 147 (172)
Q Consensus 146 I~ 147 (172)
|+
T Consensus 95 I~ 96 (262)
T PRK05289 95 IN 96 (262)
T ss_pred Ee
Confidence 76
No 35
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.89 E-value=1.6e-08 Score=77.76 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=51.7
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+..|++++.|++++.|..+ ++||++|.|++++.|+...+.... ....+||+|+||++++|. ++++||+++.++
T Consensus 31 ~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~~~~-~~v~Ig~~~~Ig~~a~I~---~gv~Ig~~~~Ig 103 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEPLQA-TPVIIEDDVFIGANCEVV---EGVIVGKGAVLA 103 (139)
T ss_pred CCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCccccccc-CCeEECCCCEECCCCEEC---CCCEECCCCEEc
Confidence 4567777777777777655 788888888888888754221111 124568888888888887 788888888854
Q ss_pred Ce
Q psy2215 163 CP 164 (172)
Q Consensus 163 a~ 164 (172)
+.
T Consensus 104 ~g 105 (139)
T cd03350 104 AG 105 (139)
T ss_pred CC
Confidence 43
No 36
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.89 E-value=6.8e-09 Score=90.65 Aligned_cols=108 Identities=9% Similarity=0.061 Sum_probs=64.7
Q ss_pred eeeccceecccCCchhhhhhccccccCCeee-----cC----CeEecccceEEC-----CCeEECCCcEEcCCCcceEEC
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGNKVS-----RK----SLVAGAQNIVLT-----GKVIIQCDAVLRGDLANIRTG 108 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is-----~~----a~I~G~~nI~Ig-----g~v~I~~~avIrGdl~~V~IG 108 (172)
.+...|+|+|+++|++|+.++...+.+.... .. ..+.-...+.|+ ++++|+++|+|.+.+.+..||
T Consensus 229 ~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~~~v~~s~i~ 308 (369)
T TIGR02092 229 AYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIEGKVENSILS 308 (369)
T ss_pred EEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEeeEEeCCEEC
Confidence 3456799999999999999885544332110 00 000001123333 355677777776443445677
Q ss_pred CCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 109 RYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 109 ~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
++|.|+++|.|... ..++++.|++++.+. |++++++|++++.
T Consensus 309 ~~~~I~~~~~i~~s----------ii~~~~~I~~~~~i~~~ii~~~~~v~~~~~ 352 (369)
T TIGR02092 309 RGVHVGKDALIKNC----------IIMQRTVIGEGAHLENVIIDKDVVIEPNVK 352 (369)
T ss_pred CCCEECCCCEEEee----------EEeCCCEECCCCEEEEEEECCCCEECCCCE
Confidence 77777777777543 358889999999998 4444444444444
No 37
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.88 E-value=2.4e-08 Score=79.20 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=38.4
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+.||+++.|.+++.|.++ +.||++|.||.+|.|.. ..+|++|+||++|.|. ++.|+++..++
T Consensus 65 v~Ig~~~~I~~~~~i~g~---~~Ig~~~~Ig~~~~I~~----------~~Ig~~~~Ig~~s~i~----~~~i~~~~~v~ 126 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGP---AYIGDNCFIGFRSVVFN----------AKVGDNCVIGHNAVVD----GVEIPPGRYVP 126 (167)
T ss_pred EEECCCceECCCCEEeCC---EEECCCCEECCCCEEEC----------CEECCCCEEcCCCEEe----CCEeCCCCEEC
Confidence 334444444444444433 55666666666665542 3569999999999998 66777776643
No 38
>PLN02296 carbonate dehydratase
Probab=98.86 E-value=1.8e-08 Score=86.84 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=67.1
Q ss_pred ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCC-------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215 67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGD-------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV 138 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGd-------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V 138 (172)
..+..|...+.|.|. .++.||.++.|+++|+|..+ ..+..||++|.|+++|+|+. ..+||+|
T Consensus 74 G~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g----------~~Igd~v 143 (269)
T PLN02296 74 GRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG----------CTVEDEA 143 (269)
T ss_pred CCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC----------CEECCCc
Confidence 345556677888875 47899999999999999732 24689999999999999865 3368999
Q ss_pred EECCCcEEEecCCCeEECCCceeCC
Q psy2215 139 YLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 139 ~IG~navI~i~~pga~IGs~v~iga 163 (172)
+||.+|+|. ++++|++++.+++
T Consensus 144 ~IG~ga~I~---~gv~Ig~~a~Iga 165 (269)
T PLN02296 144 FVGMGATLL---DGVVVEKHAMVAA 165 (269)
T ss_pred EECCCcEEC---CCeEECCCCEECC
Confidence 999999988 8888888888543
No 39
>PLN02472 uncharacterized protein
Probab=98.86 E-value=2e-08 Score=85.57 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=66.2
Q ss_pred cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeE
Q psy2215 68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVY 139 (172)
Q Consensus 68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~ 139 (172)
.+..|...+.|.|. ..|.||+++.|+++|+|..+. .++.||++|.||++|+|+. ..+||+|.
T Consensus 82 ~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~----------~~Igd~v~ 151 (246)
T PLN02472 82 DGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRS----------CTIEPECI 151 (246)
T ss_pred CCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECC----------eEEcCCCE
Confidence 34445566777774 569999999999999997532 3689999999999999974 45699999
Q ss_pred ECCCcEEEecCCCeEECCCceeCCe
Q psy2215 140 LVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 140 IG~navI~i~~pga~IGs~v~iga~ 164 (172)
||.+|+|. +++.||+++.+++.
T Consensus 152 IG~~svI~---~gavIg~~~~Ig~g 173 (246)
T PLN02472 152 IGQHSILM---EGSLVETHSILEAG 173 (246)
T ss_pred ECCCCEEC---CCCEECCCCEECCC
Confidence 99999888 78888888875543
No 40
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=2.6e-08 Score=78.52 Aligned_cols=54 Identities=15% Similarity=0.346 Sum_probs=44.2
Q ss_pred cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC---------cceEECCCCeeCCCCEEcc
Q psy2215 68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL---------ANIRTGRYCIISKGVVIRP 121 (172)
Q Consensus 68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl---------~~V~IG~~c~Ig~navI~p 121 (172)
..-.+.+.+.|.|. .++.||+++.|+++|+|++.. .+++||++|.|+++++|..
T Consensus 26 ~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 26 GKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA 89 (161)
T ss_pred CceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence 33446778888874 468999999999999999753 3789999999999999875
No 41
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.85 E-value=2.2e-08 Score=86.88 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=61.0
Q ss_pred eeccceecccCCchhhhhhccccccCC----eeecCCeEecc-----cceEEC-----CCeEECCCcEEcC-CCcceEEC
Q psy2215 44 FLSRGWWFESKSSHKILVYSGAVASGN----KVSRKSLVAGA-----QNIVLT-----GKVIIQCDAVLRG-DLANIRTG 108 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~~~~~~~gn----~Is~~a~I~G~-----~nI~Ig-----g~v~I~~~avIrG-dl~~V~IG 108 (172)
+...+.|.|+++|++++.++...+... ....+..+.+. ..+.++ +++.|+++|+|.+ .+....||
T Consensus 235 ~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s~i~ 314 (361)
T TIGR02091 235 YLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLG 314 (361)
T ss_pred EeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEccEEC
Confidence 445689999999999888765554321 11111111110 112222 2355666666654 12235666
Q ss_pred CCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 109 RYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 109 ~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
++|.|+++|+|.. ...++++.||++|.|+ ++.||+++.++
T Consensus 315 ~~~~I~~~~~i~~----------sii~~~~~v~~~~~l~----~~ivg~~~~i~ 354 (361)
T TIGR02091 315 IRVRIGSGSTVED----------SVIMGDVGIGRGAVIR----NAIIDKNVRIG 354 (361)
T ss_pred CCCEECCCCEEee----------eEEeCCCEECCCCEEe----eeEECCCCEEC
Confidence 7777777776654 2358888888888888 66666665543
No 42
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.85 E-value=2.9e-08 Score=83.58 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=33.1
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCC---------CcceEECCCCeeCCCCEEccC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------LANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------l~~V~IG~~c~Ig~navI~p~ 122 (172)
++..|.+.+.|.| ++.||+++.|+++++|+++ ..++.||++|.|+++|+|+..
T Consensus 33 ~~~~I~~~~~I~~--~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~ 94 (254)
T TIGR01852 33 DGVELKSHVVILG--HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRG 94 (254)
T ss_pred CCCEECCCCEEee--eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCc
Confidence 3444455555555 4677777777777777632 125777777777777777654
No 43
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.84 E-value=3e-08 Score=80.64 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=61.7
Q ss_pred cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCc-------cCC--------Cc---eEEeeCCCeEEC
Q psy2215 80 GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFK-------KFA--------KG---FLVYPGSTVYLV 141 (172)
Q Consensus 80 G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~-------~~~--------~g---~~~~pGd~V~IG 141 (172)
....+.||+++.|++++.|.. ..++.||++|.|++++.|....+ .+. +. -.+.+||+|+||
T Consensus 62 ~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig 140 (192)
T PRK09677 62 GRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIG 140 (192)
T ss_pred CCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEEC
Confidence 345688888899988888873 24699999999999999986432 110 00 124569999999
Q ss_pred CCcEEEecCCCeEECCCceeCCeE
Q psy2215 142 FTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 142 ~navI~i~~pga~IGs~v~iga~i 165 (172)
++++|. ++++||+++.+++..
T Consensus 141 ~~~~i~---~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 141 ENVTIL---PGVSIGNGCIVGANS 161 (192)
T ss_pred CCCEEc---CCCEECCCCEECCCC
Confidence 999999 899999999966543
No 44
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.84 E-value=1.3e-08 Score=90.04 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=40.2
Q ss_pred ceecccCCchhhhhhcccccc-----------------CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCC
Q psy2215 48 GWWFESKSSHKILVYSGAVAS-----------------GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRY 110 (172)
Q Consensus 48 g~W~D~~~p~~Ll~~~~~~~~-----------------gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~ 110 (172)
+.|+|+++|+||+.++.+... +..+..++.|.| .+.||.++.|+++|+|+ + +.||++
T Consensus 215 ~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g--~~~ig~~~~I~~~~~i~-~---~~i~~~ 288 (430)
T PRK14359 215 ENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEG--ECELEEGVRILGKSKIE-N---SHIKAH 288 (430)
T ss_pred CEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcC--ceEECCCCEECCCeEEE-e---eEECCC
Confidence 689999999998877654332 112344556666 46777777777777666 4 555655
Q ss_pred CeeCC
Q psy2215 111 CIISK 115 (172)
Q Consensus 111 c~Ig~ 115 (172)
|.|++
T Consensus 289 ~~I~~ 293 (430)
T PRK14359 289 SVIEE 293 (430)
T ss_pred CEEec
Confidence 55533
No 45
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.83 E-value=2.5e-08 Score=90.46 Aligned_cols=73 Identities=8% Similarity=0.109 Sum_probs=42.7
Q ss_pred eeccceecccCCchhh------hhhcc-----ccccCCeeec-CCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215 44 FLSRGWWFESKSSHKI------LVYSG-----AVASGNKVSR-KSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC 111 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~L------l~~~~-----~~~~gn~Is~-~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c 111 (172)
+..+|+|.|.+.|+++ +.++. ....|..+.. +..+.. .++.|+.++.|+++++|.++ +.||++|
T Consensus 221 ~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~v~ig~~~~I~~~~~i~~~---v~Ig~~~ 296 (482)
T PRK14352 221 HHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWID-VDVTIGRDVVIHPGTQLLGR---TTIGEDA 296 (482)
T ss_pred EecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEe-CCEEECCCcEEeCCcEEeec---CEECCCC
Confidence 4578999999999886 33332 2223322211 111111 25667777777777777665 6666666
Q ss_pred eeCCCCEEc
Q psy2215 112 IISKGVVIR 120 (172)
Q Consensus 112 ~Ig~navI~ 120 (172)
.|+++|+|.
T Consensus 297 ~I~~~~~i~ 305 (482)
T PRK14352 297 VVGPDTTLT 305 (482)
T ss_pred EECCCCEEe
Confidence 666666654
No 46
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=79.13 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=66.1
Q ss_pred cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCc-----eEEeeCCCeEECCCcEEEec
Q psy2215 80 GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKG-----FLVYPGSTVYLVFTASVRLK 149 (172)
Q Consensus 80 G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g-----~~~~pGd~V~IG~navI~i~ 149 (172)
|..++.+|.++.++.++.+. +...++||+++.+++++.|.+..+.. ..+ -++.+|++||||++++|.
T Consensus 64 ~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il-- 140 (190)
T COG0110 64 GEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVIL-- 140 (190)
T ss_pred CCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEEC--
Confidence 44789999999999999975 34579999999999999999754432 111 125569999999999999
Q ss_pred CCCeEECCCceeCCe
Q psy2215 150 SPFAQIYSYIIAPCP 164 (172)
Q Consensus 150 ~pga~IGs~v~iga~ 164 (172)
||++||+++++|+.
T Consensus 141 -pGV~IG~gavigag 154 (190)
T COG0110 141 -PGVTIGEGAVIGAG 154 (190)
T ss_pred -CCEEECCCcEEeeC
Confidence 99999999997764
No 47
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.81 E-value=2.1e-08 Score=90.16 Aligned_cols=107 Identities=7% Similarity=-0.047 Sum_probs=63.6
Q ss_pred cceecccCCchhhhhhccccccCC----------------eeecCCeEec-ccceE-ECCCeEECCCcEEcCC-CcceEE
Q psy2215 47 RGWWFESKSSHKILVYSGAVASGN----------------KVSRKSLVAG-AQNIV-LTGKVIIQCDAVLRGD-LANIRT 107 (172)
Q Consensus 47 ~g~W~D~~~p~~Ll~~~~~~~~gn----------------~Is~~a~I~G-~~nI~-Igg~v~I~~~avIrGd-l~~V~I 107 (172)
+|+|.|+++|++++.++...+... +..+.+.+.. .+++. +..++.|+++|+|.+- +.+..|
T Consensus 267 ~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi 346 (425)
T PRK00725 267 EPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVL 346 (425)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEE
Confidence 379999999999988876654321 1111122211 00100 1124555666655320 123667
Q ss_pred CCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCC
Q psy2215 108 GRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPC 163 (172)
Q Consensus 108 G~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga 163 (172)
|++|.|+++|.|... .++++|.||++|.|. |+++++.|+++++++.
T Consensus 347 ~~~~~I~~~~~i~~s----------vi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 347 FSRVRVNSFSNVEDS----------VLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred CCCCEECCCCEEeee----------EEcCCCEECCCCEEeeEEECCCCEECCCCEECC
Confidence 777777777777543 358899999999999 6666666666655543
No 48
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.81 E-value=5.1e-08 Score=71.64 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=59.6
Q ss_pred eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC------ceEEeeCCCeEECCCc
Q psy2215 71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK------GFLVYPGSTVYLVFTA 144 (172)
Q Consensus 71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~------g~~~~pGd~V~IG~na 144 (172)
.|.+.+.|.+ +..|++++.|++++.|..+ +.||++|.|++++.|......... --...+|++++||+++
T Consensus 6 ~I~~~~~i~~--~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 6 IIGTNVFIEN--DVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred EECCCcEECC--CcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence 4455555554 4677778888888877654 889999999998888743211000 0013569999999999
Q ss_pred EEEecCCCeEECCCceeCCe
Q psy2215 145 SVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 145 vI~i~~pga~IGs~v~iga~ 164 (172)
++. +++.|++++.+++.
T Consensus 81 ~v~---~~~~ig~~~~i~~~ 97 (119)
T cd03358 81 TIL---PGVTIGEYALVGAG 97 (119)
T ss_pred EEe---CCcEECCCCEEccC
Confidence 998 77888888886543
No 49
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.80 E-value=2.2e-08 Score=88.91 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=21.0
Q ss_pred cccceeecccccceeeeecCCCCcee--------eeccceecccCCchh
Q psy2215 18 SSGQRCLLANTNRRVWVQSQPSGAVD--------FLSRGWWFESKSSHK 58 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~W~D~~~p~~ 58 (172)
..+|-+.++|...+.-..+---+|+. .+....++-+..|.-
T Consensus 35 ~~~~i~f~~~~ky~~~l~~s~Agaviv~~~~~~~~~~~~~~Lv~~~P~~ 83 (338)
T COG1044 35 QPGDISFLANPKYRKELKTSRAGAVIVSAKDAAFAPAKKNALVVKDPYL 83 (338)
T ss_pred CcccceeecChhhhhhcccCcccEEEecHHHHhcccCCceEEEeCCchH
Confidence 34566666665444433333333332 234555666666775
No 50
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.80 E-value=3.9e-08 Score=75.92 Aligned_cols=68 Identities=13% Similarity=-0.005 Sum_probs=33.3
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
..+.+++.++++++|... +.|++++.||++|+|.+....... ..+|++++|+++|++. .+++||+++.
T Consensus 91 ~~i~~~~~ig~~~~i~~~---~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~---~~~~ig~~~~ 158 (197)
T cd03360 91 AVVSPSAVIGEGCVIMAG---AVINPDARIGDNVIINTGAVIGHD---CVIGDFVHIAPGVVLS---GGVTIGEGAF 158 (197)
T ss_pred eEECCCCEECCCCEEcCC---CEECCCCEECCCeEECCCCEECCC---CEECCCCEECCCCEEc---CCcEECCCCE
Confidence 345555555555555443 555666666666666544321000 1235555555555554 3455555544
No 51
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.79 E-value=6.9e-08 Score=75.92 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=67.3
Q ss_pred cccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCC
Q psy2215 66 VASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFT 143 (172)
Q Consensus 66 ~~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~n 143 (172)
...+..|...+.|.+. .++.|++++.|+++|.|+++. .++.||++|.|++++.|.. ..+|++|+||++
T Consensus 21 iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----------~~Ig~~~~Ig~~ 90 (154)
T cd04650 21 IGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG----------AKVGNYVIVGMG 90 (154)
T ss_pred ECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----------cEECCCCEEcCC
Confidence 3456667778888874 569999999999999998653 3689999999999998864 346888888888
Q ss_pred cEEEecCCCeEECCCceeCC
Q psy2215 144 ASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 144 avI~i~~pga~IGs~v~iga 163 (172)
+++. +++.||+++.+++
T Consensus 91 ~~i~---~~~~Ig~~~~vg~ 107 (154)
T cd04650 91 AILL---NGAKIGDHVIIGA 107 (154)
T ss_pred CEEe---CCCEECCCCEECC
Confidence 8887 6777888777554
No 52
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.78 E-value=5.5e-08 Score=76.38 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=47.0
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce----EEeeCCCeEECC
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF----LVYPGSTVYLVF 142 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~----~~~pGd~V~IG~ 142 (172)
+++.+.+. .++.|+.++.|+++++|..+ +.||++|.|++++.|......- ..+. ...+|++++||+
T Consensus 90 i~~~a~i~--~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~ 164 (201)
T TIGR03570 90 IHPSAIVS--PSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGA 164 (201)
T ss_pred ecCCeEEC--CCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECC
Confidence 34444443 25666777777777766654 5555555555555554322110 0000 023478888888
Q ss_pred CcEEEecCCCeEECCCceeCC
Q psy2215 143 TASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 143 navI~i~~pga~IGs~v~iga 163 (172)
+|+|. +++.||+++.+++
T Consensus 165 ~~~v~---~~~~i~~~~~i~~ 182 (201)
T TIGR03570 165 GATII---QGVTIGAGAIVGA 182 (201)
T ss_pred CCEEe---CCCEECCCCEECC
Confidence 88887 6777777777554
No 53
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.77 E-value=4.8e-08 Score=84.54 Aligned_cols=29 Identities=0% Similarity=-0.106 Sum_probs=24.5
Q ss_pred EeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
+.+||+|+||++|+|. ++++||+++++|+
T Consensus 174 ViIgDnv~IGa~a~I~---~GV~IG~gavIGa 202 (269)
T TIGR00965 174 TIIEDNCFIGARSEIV---EGVIVEEGSVISM 202 (269)
T ss_pred eEECCCCEECCCCEEc---CCCEECCCCEEeC
Confidence 5679999999999999 8888888888444
No 54
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.76 E-value=3.8e-08 Score=82.77 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=21.8
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
+..||.++.|++++.|.++ +.||++|.|+++++|.
T Consensus 116 ~~~IG~~~~I~~~a~I~~~---s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGR---ATVGKNVHIGAGAVLA 150 (231)
T ss_pred CeEECCCCEEccccccCCC---cEECCCcEEcCCcEEc
Confidence 4566666666666666554 6666666666666665
No 55
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.76 E-value=4.1e-08 Score=83.50 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=48.3
Q ss_pred eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+|++.|.|.. +..|++++.|+++|+|.++ +.||++|.|+++++|.++ +.+|++|.|+++|+|.
T Consensus 4 ~I~p~a~I~~--~a~Ig~~v~Igp~~~I~~~---v~IG~~~~I~~~~~I~g~---------~~IG~~~~I~~~a~Ig 66 (262)
T PRK05289 4 KIHPTAIVEP--GAKIGENVEIGPFCVIGPN---VVIGDGTVIGSHVVIDGH---------TTIGKNNRIFPFASIG 66 (262)
T ss_pred ccCCCCEECC--CCEECCCCEECCCeEECCC---CEECCCCEECCCCEEcCc---------cEECCCCEEcccceec
Confidence 4566666654 5788889999999998876 888888888888888876 4457777777777764
No 56
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.75 E-value=4.1e-08 Score=80.57 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=50.0
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE-------ecCCCeEECC
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR-------LKSPFAQIYS 157 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~-------i~~pga~IGs 157 (172)
.|+++++|+++++|.|+ +.||++|.|+++|+|+.+.- ++.+|+++.||++|+|+ +++++++|++
T Consensus 10 ~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~g------~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~ 80 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDFG------RIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGH 80 (192)
T ss_pred cCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccCC------ceEECCCCEECCCeEEeccCCCCCeECCCCEECC
Confidence 35788888888888887 88999999999999887521 15668888888888883 5555555555
Q ss_pred Cce
Q psy2215 158 YII 160 (172)
Q Consensus 158 ~v~ 160 (172)
++.
T Consensus 81 ~a~ 83 (192)
T TIGR02287 81 GAI 83 (192)
T ss_pred CCE
Confidence 544
No 57
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.74 E-value=1.3e-07 Score=73.97 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=60.8
Q ss_pred ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215 67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA 144 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na 144 (172)
..+..|...+.|.+. .++.||.++.|+++|+|++.. .++.||++|.|+++++|.. ..+|++++||++|
T Consensus 22 G~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~ 91 (155)
T cd04745 22 GKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG----------CTIGRNALVGMNA 91 (155)
T ss_pred CCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----------CEECCCCEECCCC
Confidence 345555566777653 358899999999999996421 2578888888888887764 3458888888888
Q ss_pred EEEecCCCeEECCCceeCC
Q psy2215 145 SVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 145 vI~i~~pga~IGs~v~iga 163 (172)
+|. +++.||+++.+++
T Consensus 92 ~I~---~g~~Ig~~~~Ig~ 107 (155)
T cd04745 92 VVM---DGAVIGEESIVGA 107 (155)
T ss_pred EEe---CCCEECCCCEECC
Confidence 888 6677777777554
No 58
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.74 E-value=4.8e-08 Score=87.95 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=66.5
Q ss_pred eeeccceecccCCchhhhhhccccccC-----CeeecCCeEe------------cc--cceEECCCeEECCCcEEcCCCc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASG-----NKVSRKSLVA------------GA--QNIVLTGKVIIQCDAVLRGDLA 103 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~g-----n~Is~~a~I~------------G~--~nI~Igg~v~I~~~avIrGdl~ 103 (172)
-+...|+|.|+++|+++++++...+.. ....++..++ +. .+..|+.++.| +++.|+
T Consensus 249 ~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~---- 323 (429)
T PRK02862 249 SYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNCSIH---- 323 (429)
T ss_pred EEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCcEEE----
Confidence 345689999999999999887554411 0011112222 11 12344555555 444443
Q ss_pred ceEECCCCeeCCCCEEccCCcc-------CCCceEE--eeCCCeEECCCcEEE--ecCCCeEECCCcee
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKK-------FAKGFLV--YPGSTVYLVFTASVR--LKSPFAQIYSYIIA 161 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~-------~~~g~~~--~pGd~V~IG~navI~--i~~pga~IGs~v~i 161 (172)
+..||++|.||++|+|..+.-. -+++... ....++.||++|+|. |+++++.||+++.+
T Consensus 324 ~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 324 HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 4688899999888887654110 0000000 113478899999999 67777777777664
No 59
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.74 E-value=8e-08 Score=81.90 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC--CCc-eEEeeCCCeEECCCcEE
Q psy2215 70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF--AKG-FLVYPGSTVYLVFTASV 146 (172)
Q Consensus 70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~--~~g-~~~~pGd~V~IG~navI 146 (172)
..|.+.+.|.+ +++||+++.|+++++|+++ +.||++|.|+++++|++....+ ... -.+.+||+++|+++++|
T Consensus 18 v~Igp~~~I~~--~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI 92 (255)
T PRK12461 18 VEIGPFAVIGA--NVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTI 92 (255)
T ss_pred CEECCCCEECC--CCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEE
Confidence 33444444433 5777777777777777766 7788888888888887543322 111 12455777777777777
Q ss_pred E
Q psy2215 147 R 147 (172)
Q Consensus 147 ~ 147 (172)
+
T Consensus 93 ~ 93 (255)
T PRK12461 93 H 93 (255)
T ss_pred e
Confidence 5
No 60
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.74 E-value=4.6e-08 Score=82.31 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=66.4
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC--CCc-eEEeeCCCeEECCCc
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF--AKG-FLVYPGSTVYLVFTA 144 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~--~~g-~~~~pGd~V~IG~na 144 (172)
++.+|.+.+.|.+ ++.||+++.|+++|+|.++ +.||++|.|+++++|++....+ .+. -.+.+|++|+|+++|
T Consensus 16 ~~~~I~p~~~I~~--~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~ 90 (254)
T cd03351 16 ENVEIGPFCVIGP--NVEIGDGTVIGSHVVIDGP---TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFV 90 (254)
T ss_pred CCCEECCCcEECC--CCEECCCCEECCCcEEeCC---eEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCcc
Confidence 4555555665544 7888999999999999887 9999999999999998643211 111 125679999999999
Q ss_pred EEE--ecC--CCeEECCCceeCCe
Q psy2215 145 SVR--LKS--PFAQIYSYIIAPCP 164 (172)
Q Consensus 145 vI~--i~~--pga~IGs~v~iga~ 164 (172)
+|. ... ..++||+++.+++.
T Consensus 91 ~I~~~~~~~~~~~~IG~~~~I~~~ 114 (254)
T cd03351 91 TIHRGTAQGGGVTRIGNNNLLMAY 114 (254)
T ss_pred EEeccccCCCCceEECCCCEECCC
Confidence 998 111 14888998886443
No 61
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.73 E-value=8.4e-08 Score=76.26 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=53.6
Q ss_pred cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCCc-------c-----------------eEECCCCeeCCCCEEccC
Q psy2215 68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA-------N-----------------IRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~-------~-----------------V~IG~~c~Ig~navI~p~ 122 (172)
++..|.+.+.|... ..+.||+++.|+++|+|+.+.. + +.||++|.|+++|+|.+.
T Consensus 22 ~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~g 101 (164)
T cd04646 22 PGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKN 101 (164)
T ss_pred CCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCC
Confidence 45556666666532 4578888888888888864421 2 445555555555555544
Q ss_pred CccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 123 FKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 123 ~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+.+|+++.||++|+|. ++++|+++++++
T Consensus 102 ---------v~Ig~~~~IgagsvV~---~~~~i~~~~vi~ 129 (164)
T cd04646 102 ---------VIITDGCIIGAGCKLP---SSEILPENTVIY 129 (164)
T ss_pred ---------CEECCCCEEeCCeEEC---CCcEECCCeEEe
Confidence 3458888888888877 888888887743
No 62
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.72 E-value=1.2e-07 Score=70.10 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=22.8
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~ 122 (172)
.+++++++.|.+++.|.++ +.||++|.|++++.|+++
T Consensus 11 ~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~~ 47 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYGN 47 (101)
T ss_pred CEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeCc
Confidence 3666666666666666655 556666666666555554
No 63
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.72 E-value=5e-08 Score=85.65 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=23.0
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~ 122 (172)
|++.+.+.. +..|++++.|+++++|.++ +.||++|.|+++|+|+++
T Consensus 94 i~p~a~i~~--~a~Ig~~v~I~~~~~I~~~---v~IG~~~~I~~~~~Ig~~ 139 (324)
T TIGR01853 94 IHPTAVVDP--SAKIGDGVTIGPNVVIGAG---VEIGENVIIGPGVVIGDD 139 (324)
T ss_pred cCCCCEeCC--CcEECCCCEECCCcEEccC---cEECCcEEECCCCEECCc
Confidence 455555443 3455555555555555544 444444444444444433
No 64
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.72 E-value=1.1e-07 Score=78.24 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=66.8
Q ss_pred ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215 67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA 144 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na 144 (172)
..+..|...+.|.|. ..+.|+.++.|+++|+|++.. .+..||++|.|+++++|+. ..+|++|+||.++
T Consensus 32 G~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g----------~vIG~~v~IG~ga 101 (196)
T PRK13627 32 GAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG----------CVIGRDALVGMNS 101 (196)
T ss_pred CCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee----------EEECCCCEECcCC
Confidence 345566777888774 248999999999999998643 2678888888888888765 3469999999999
Q ss_pred EEEecCCCeEECCCceeCCe
Q psy2215 145 SVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 145 vI~i~~pga~IGs~v~iga~ 164 (172)
+|. ++++||+++.+++.
T Consensus 102 ~V~---~g~~IG~~s~Vgag 118 (196)
T PRK13627 102 VIM---DGAVIGEESIVAAM 118 (196)
T ss_pred ccC---CCcEECCCCEEcCC
Confidence 998 88999999885544
No 65
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.71 E-value=6.9e-08 Score=84.80 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.1
Q ss_pred EeeCCCeEECCCcEEE
Q psy2215 132 VYPGSTVYLVFTASVR 147 (172)
Q Consensus 132 ~~pGd~V~IG~navI~ 147 (172)
+.+||+|.||+|++|.
T Consensus 196 vvIgd~v~IGa~~~I~ 211 (324)
T TIGR01853 196 VIIEDDVEIGANTTID 211 (324)
T ss_pred EEECCCcEECCCCEEe
Confidence 3459999999999994
No 66
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.71 E-value=1.4e-07 Score=74.05 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=15.8
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~ 122 (172)
.+++++.|++++.|..+ ..|++++.||++|.|.+.
T Consensus 95 ~i~~~~~ig~~~~i~~~---~~i~~~~~ig~~~~i~~~ 129 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAG---AVINPDVRIGDNVIINTG 129 (201)
T ss_pred EECCCCEECCCCEECCC---CEECCCCEECCCcEECCC
Confidence 34444444444444333 444455555555555443
No 67
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.70 E-value=7.1e-08 Score=84.65 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=22.9
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~ 122 (172)
+++.+.+.. ++.|++++.|+++++|..+ +.||++|.|+++|+|+++
T Consensus 103 i~~~a~v~~--~~~ig~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~ 148 (343)
T PRK00892 103 IHPSAVIDP--SAKIGEGVSIGPNAVIGAG---VVIGDGVVIGAGAVIGDG 148 (343)
T ss_pred CCCCcEECC--CCEECCCCEECCCeEEecc---ceeCCCcEECCCCEEcCC
Confidence 444554443 3455555555555555544 444444444444444443
No 68
>PRK10191 putative acyl transferase; Provisional
Probab=98.70 E-value=1.2e-07 Score=75.03 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=52.6
Q ss_pred ceEECCCeEECC--CcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 83 NIVLTGKVIIQC--DAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 83 nI~Igg~v~I~~--~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
+..||+++.|++ +++|.++ ++||++|.|+++++|+........ ...+||+|+||+++.|. ++++||+++.
T Consensus 47 ~a~Ig~~~~I~~g~~i~I~~~---~~IGd~~~I~h~v~IG~~~~~~~~--~~~IGd~~~Ig~~~~I~---~~v~IG~~~~ 118 (146)
T PRK10191 47 AATIGRRFTIHHGYAVVINKN---VVAGDDFTIRHGVTIGNRGADNMA--CPHIGNGVELGANVIIL---GDITIGNNVT 118 (146)
T ss_pred CCEECCCeEECCCCeEEECCC---cEECCCCEECCCCEECCCCcCCCC--CCEECCCcEEcCCCEEe---CCCEECCCCE
Confidence 345666666666 4566655 888888888888888754221111 13469999999999999 7889999888
Q ss_pred eCCeE
Q psy2215 161 APCPL 165 (172)
Q Consensus 161 iga~i 165 (172)
+++..
T Consensus 119 Igags 123 (146)
T PRK10191 119 VGAGS 123 (146)
T ss_pred ECCCC
Confidence 66644
No 69
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.69 E-value=1e-07 Score=66.73 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=42.3
Q ss_pred CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEec
Q psy2215 70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLK 149 (172)
Q Consensus 70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~ 149 (172)
.+|.+++.|. +..|++++.|++++.|+. ..|+++|.|++++.|... ..++++.||+++.+.
T Consensus 6 ~~I~~~~~i~---~~~Ig~~~~I~~~~~i~~----s~i~~~~~ig~~~~l~~s----------vi~~~~~i~~~~~v~-- 66 (81)
T cd04652 6 TQVGEKTSIK---RSVIGANCKIGKRVKITN----CVIMDNVTIEDGCTLENC----------IIGNGAVIGEKCKLK-- 66 (81)
T ss_pred CEECCCCEEe---CcEECCCCEECCCCEEeC----cEEeCCCEECCCCEEecc----------EEeCCCEECCCCEEc--
Confidence 3444445443 245566666666666652 456666666666666432 246677777777777
Q ss_pred CCCeEECCCceeCC
Q psy2215 150 SPFAQIYSYIIAPC 163 (172)
Q Consensus 150 ~pga~IGs~v~iga 163 (172)
++.|++++.++.
T Consensus 67 --~~ii~~~~~i~~ 78 (81)
T cd04652 67 --DCLVGSGYRVEA 78 (81)
T ss_pred --cCEECCCcEeCC
Confidence 666666665543
No 70
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.69 E-value=1.3e-07 Score=75.22 Aligned_cols=78 Identities=13% Similarity=-0.039 Sum_probs=47.2
Q ss_pred eEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSY 158 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~ 158 (172)
+.|+.++.|++++.|..... .+.||++|.|+++++|+...... ......+||+|+||++|+|. .+++||++
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~-~~~~~~Ig~~v~Ig~~a~I~---~~v~IG~~ 137 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEK-GKRHPTVGEGVMIGAGAKVL---GNIEVGEN 137 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCcccc-CCcCCEECCCcEEcCCCEEE---CCcEECCC
Confidence 44455555555554432210 25666666666666666432110 00113459999999999999 78999999
Q ss_pred ceeCCeE
Q psy2215 159 IIAPCPL 165 (172)
Q Consensus 159 v~iga~i 165 (172)
+.+|+..
T Consensus 138 ~~Iga~s 144 (162)
T TIGR01172 138 AKIGANS 144 (162)
T ss_pred CEECCCC
Confidence 9977654
No 71
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.69 E-value=1.6e-07 Score=75.17 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=26.7
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
.+.+|.+.+.|.+ ++.||+++.|++++.|++. .||++|.|++++.|.
T Consensus 20 ~~~~I~~~a~i~~--~~~Ig~~~~I~~~~~I~~~----~Ig~~~~I~~~~~i~ 66 (193)
T cd03353 20 VDVVIDPGVILEG--KTVIGEDCVIGPNCVIKDS----TIGDGVVIKASSVIE 66 (193)
T ss_pred CCcEECCCCEEeC--cCEECCCCEECCCcEEeCC----EECCCCEEcCCeEEE
Confidence 3334455555543 5667777777777777642 555555555555444
No 72
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.69 E-value=5.3e-08 Score=86.93 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=60.2
Q ss_pred eeccce--ecccCCchhhhhhccccc---------cC-CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215 44 FLSRGW--WFESKSSHKILVYSGAVA---------SG-NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC 111 (172)
Q Consensus 44 ~~~~g~--W~D~~~p~~Ll~~~~~~~---------~g-n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c 111 (172)
+..+|. |+|..+|+||..++.+.. .+ ..+.+.+...+. ++.||.++.|+++++|.++ +.||++|
T Consensus 215 ~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~-~~~ig~~~~i~~~~~i~~~---~~Ig~~~ 290 (458)
T PRK14354 215 YQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDA-DVEIGSDTVIEPGVVIKGN---TVIGEDC 290 (458)
T ss_pred EecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECC-CcEECCCCEEeCCeEEecc---eEECCCC
Confidence 345554 567779988876553321 11 112333333332 5677777777777777776 7888888
Q ss_pred eeCCCCEEccCC-----ccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 112 IISKGVVIRPPF-----KKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 112 ~Ig~navI~p~~-----~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
.|+++++|+.+. .. ..+. ...+|++|.||++|.|. +++.||+++.
T Consensus 291 ~I~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~Ig~~~~i~---~~~~Ig~~~~ 342 (458)
T PRK14354 291 VIGPGSRIVDSTIGDGVTI-TNSVIEESKVGDNVTVGPFAHLR---PGSVIGEEVK 342 (458)
T ss_pred EECCCcEEeccEECCCCEE-EEEEEeCCEECCCcEECCceEec---CCCEEeCCcE
Confidence 888877765321 00 0000 01336666666666666 4444444444
No 73
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.69 E-value=1.6e-07 Score=77.51 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=57.5
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC---------------------
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA--------------------- 127 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~--------------------- 127 (172)
+..|...+.|. ++.||.++.|++++.|+ .+.||++|.|++++.|.+..+...
T Consensus 25 ~~~Ig~~a~I~---~s~IG~~s~I~~~~~i~----~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 25 YTEIGERTRLR---EVALGDYSYVMRDCDII----YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred CcEECCCcEEe---CCEECCCCEECCCcEEe----eeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 33344444443 34555555555555555 378999999999999986532210
Q ss_pred -------CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 128 -------KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 128 -------~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
......+||+|+||.+++|. ++++||+++.+++..
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~---~gv~Ig~~~~I~~gs 139 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWIGHGAVIL---PGVTIGNGAVIAAGA 139 (204)
T ss_pred ccccccccCCCeEECCCCEECCCCEEC---CCCEECCCCEECCCC
Confidence 00113458999999999998 899999999866653
No 74
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.67 E-value=1e-07 Score=83.59 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=30.7
Q ss_pred eEECCCCeeCCCCEEccCCccC--CCc-e-------EEeeCCCeEECCCcEEE-ecCCCeEECCCce
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKF--AKG-F-------LVYPGSTVYLVFTASVR-LKSPFAQIYSYII 160 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~--~~g-~-------~~~pGd~V~IG~navI~-i~~pga~IGs~v~ 160 (172)
+.||++|.|+++|+|+...-.| ..+ . .+.+||+|.||++++|. -.+.++.||+++.
T Consensus 167 ~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~ 233 (343)
T PRK00892 167 VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 233 (343)
T ss_pred CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCE
Confidence 5666666666666665321111 001 0 14559999999999995 1112345555544
No 75
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.67 E-value=9.4e-08 Score=84.91 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=32.1
Q ss_pred eEECCCCeeCCCCEEccCCccC---CCc-eE------EeeCCCeEECCCcEEE-ecCCCeEECCCce
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKF---AKG-FL------VYPGSTVYLVFTASVR-LKSPFAQIYSYII 160 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~---~~g-~~------~~pGd~V~IG~navI~-i~~pga~IGs~v~ 160 (172)
+.||++|.|+++++|+.+.-.| ..| .. +.+||+|.||+|+.|- =-|.++.||+++.
T Consensus 166 ~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~k 232 (338)
T COG1044 166 VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232 (338)
T ss_pred cEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcE
Confidence 6666666666666666443222 223 11 2348999999998887 1112266666655
No 76
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.67 E-value=2.6e-07 Score=72.39 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=49.0
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
.+..|...+.|.+ ++.|++++.|++++.|+++ +.||++|.|++++.|... .+++++.|++++.+.
T Consensus 22 ~~~~I~~~a~i~~--~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~s----------iig~~~~I~~~~~i~ 86 (163)
T cd05636 22 EGAIVRSGAYIEG--PVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVKNS----------IIMDGTKVPHLNYVG 86 (163)
T ss_pred CCCEECCCCEEeC--CeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEeee----------EecCCCEeccCCEEe
Confidence 4455666666665 5888888888888888876 888888888888888642 347777777777776
No 77
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.66 E-value=1.8e-07 Score=78.70 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=60.1
Q ss_pred cCCeeecCCeEecc----------cceEECCCeEECCCcEEcCCC----cceEECCCCeeCCCCEEccCCcc-----CCC
Q psy2215 68 SGNKVSRKSLVAGA----------QNIVLTGKVIIQCDAVLRGDL----ANIRTGRYCIISKGVVIRPPFKK-----FAK 128 (172)
Q Consensus 68 ~gn~Is~~a~I~G~----------~nI~Igg~v~I~~~avIrGdl----~~V~IG~~c~Ig~navI~p~~~~-----~~~ 128 (172)
++..|...+.|.+. .++.||+++.|+++++|.... .++.||++|.|++++.|..+... +..
T Consensus 51 ~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~ 130 (254)
T TIGR01852 51 EGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILAN 130 (254)
T ss_pred CCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECC
Confidence 45555556666431 368889999999988887432 25777777777666666433221 011
Q ss_pred ceE----EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 129 GFL----VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 129 g~~----~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
+.. ..+||+|+||.++.|. ++++||+++.+++..
T Consensus 131 ~~~i~~~~~Igd~~~Ig~~~~i~---~~v~Ig~~~~Ig~~s 168 (254)
T TIGR01852 131 NATLAGHVEVGDYAIIGGLVAVH---QFVRIGRYAMIGGLS 168 (254)
T ss_pred CCEECCCcEECCCcEEeccCEEC---CCcEECCCCEEeeee
Confidence 110 2347778888888777 778888888855543
No 78
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.66 E-value=2.2e-07 Score=71.38 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCC
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFT 143 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~n 143 (172)
+..+...+.|. .+..|++++.|++++.|.+.+ .++.||++|.|+++++|.+. ..+|+++.||++
T Consensus 37 ~~~I~~~~~I~--~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~g---------v~Ig~~~~Ig~g 105 (139)
T cd03350 37 GTMVDSWATVG--SCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEG---------VIVGKGAVLAAG 105 (139)
T ss_pred CeEEcCCCEEC--CCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCC---------CEECCCCEEcCC
Confidence 33344444442 368899999999999998754 46999999999999999988 457999999999
Q ss_pred cEEEecCCCeEECCC
Q psy2215 144 ASVRLKSPFAQIYSY 158 (172)
Q Consensus 144 avI~i~~pga~IGs~ 158 (172)
++|. ++++|+++
T Consensus 106 ~~V~---~~~~I~~~ 117 (139)
T cd03350 106 VVLT---QSTPIYDR 117 (139)
T ss_pred CEEc---CCeEeccc
Confidence 9999 88999987
No 79
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.66 E-value=1.4e-07 Score=69.86 Aligned_cols=25 Identities=4% Similarity=-0.153 Sum_probs=12.4
Q ss_pred CCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 135 GSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 135 Gd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
++++.|++++.|. ++.||+++.+|+
T Consensus 66 ~~~~~i~~~~~lg----~siIg~~v~ig~ 90 (101)
T cd05635 66 EGYSNKQHDGFLG----HSYLGSWCNLGA 90 (101)
T ss_pred cCCCEecCcCEEe----eeEECCCCEECC
Confidence 4445555555544 555555555443
No 80
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.65 E-value=7.6e-08 Score=86.41 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=36.5
Q ss_pred ecccCCchhhhhhcc---ccccCCeeecCCe--EecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 50 WFESKSSHKILVYSG---AVASGNKVSRKSL--VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 50 W~D~~~p~~Ll~~~~---~~~~gn~Is~~a~--I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
|.|.+++++++.++. +...+..+...+. +.| ++.+|.++.|+++|.|.++ +.||++|.|+++|+|+
T Consensus 229 ~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~--~~~ig~~~~I~~~~~i~~~---v~ig~~~~I~~~~~i~ 299 (456)
T PRK09451 229 RLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRG--TLTHGRDVEIDTNVIIEGN---VTLGNRVKIGAGCVLK 299 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECC--cEEECCCCEEcCCeEEecC---cEECCCCEECCCceEe
Confidence 788888888776542 2222322211111 222 4566666666666666655 5666666666655554
No 81
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.64 E-value=2.6e-07 Score=62.22 Aligned_cols=68 Identities=25% Similarity=0.262 Sum_probs=54.5
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVF 142 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~ 142 (172)
.+.++...+.|.+ ++.||+++.|++++.|.+.. .++.||++|.|++++.|.+. ..+|+++.||+
T Consensus 5 ~~~~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~~ 73 (78)
T cd00208 5 EGVKIHPKAVIRG--PVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG---------VKIGDNAVIGA 73 (78)
T ss_pred CCeEECCCCEEeC--cEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC---------CEECCCCEECc
Confidence 4556666777755 79999999999999998652 36999999999999999986 34577888887
Q ss_pred CcEE
Q psy2215 143 TASV 146 (172)
Q Consensus 143 navI 146 (172)
+++|
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 7765
No 82
>KOG1322|consensus
Probab=98.64 E-value=7.3e-08 Score=85.72 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=74.8
Q ss_pred eeeeccceecccCCchhhhhhccccccCCeeecC------CeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215 42 VDFLSRGWWFESKSSHKILVYSGAVASGNKVSRK------SLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK 115 (172)
Q Consensus 42 ~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~------a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~ 115 (172)
--|+.+|+|+|.|.|.|.+.+..+.+..-..... +.+.| |+.+..-+.++++|.|+.| +.||++|.|++
T Consensus 219 ~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~--nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~ 293 (371)
T KOG1322|consen 219 YAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVG--NVLVDSIASIGENCSIGPN---VVIGPRVRIED 293 (371)
T ss_pred EEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccc--cEeeccccccCCccEECCC---ceECCCcEecC
Confidence 3588999999999999999988887755444322 33333 5555666666667777666 67777777777
Q ss_pred CCEEccCCccCCCceE-------EeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215 116 GVVIRPPFKKFAKGFL-------VYPGSTVYLVFTASVRLKSPFAQIYSYIIA 161 (172)
Q Consensus 116 navI~p~~~~~~~g~~-------~~pGd~V~IG~navI~i~~pga~IGs~v~i 161 (172)
++.|....-.-..-+. ...|-++.||.++.|. ..|+||++|.+
T Consensus 294 gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id---~~a~lG~nV~V 343 (371)
T KOG1322|consen 294 GVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARID---KNAVLGKNVIV 343 (371)
T ss_pred ceEEEeeEEEccceechhHHHHhhhccccccccCceEEe---cccEeccceEE
Confidence 6666543211000000 1127789999999888 88999999883
No 83
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.64 E-value=2.3e-07 Score=63.47 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=15.2
Q ss_pred CCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 87 TGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 87 gg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
+.++.|++++.|+ + ..||++|.|++++.|+
T Consensus 3 g~~~~I~~~~~i~-~---s~ig~~~~ig~~~~i~ 32 (79)
T cd05787 3 GRGTSIGEGTTIK-N---SVIGRNCKIGKNVVID 32 (79)
T ss_pred cCCCEECCCCEEe-c---cEECCCCEECCCCEEe
Confidence 4455555555554 2 4455555555555554
No 84
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.63 E-value=2.8e-07 Score=73.15 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=55.7
Q ss_pred CeeecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEee
Q psy2215 70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP 134 (172)
Q Consensus 70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p 134 (172)
..+...+.|....+|+||+++.|+++|.|... ..++.||++|.||++++|.++ +.+
T Consensus 69 v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~g---------v~I 139 (169)
T cd03357 69 FYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPG---------VTI 139 (169)
T ss_pred ceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCC---------CEE
Confidence 33444555554458999999999999999632 237999999999999999987 557
Q ss_pred CCCeEECCCcEEE
Q psy2215 135 GSTVYLVFTASVR 147 (172)
Q Consensus 135 Gd~V~IG~navI~ 147 (172)
|++++||++|+|.
T Consensus 140 g~~~~VgagavV~ 152 (169)
T cd03357 140 GDNSVIGAGSVVT 152 (169)
T ss_pred CCCCEECCCCEEc
Confidence 9999999999998
No 85
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.62 E-value=4.7e-07 Score=70.35 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=59.4
Q ss_pred ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCCc-ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215 67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA-NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA 144 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~-~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na 144 (172)
..+..|...+.|.|. ..+.||.++.|+++|+|.+... +..||++|.|+++|+|.. ..+|++++||+++
T Consensus 21 g~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----------~~Ig~~~~Ig~~~ 90 (153)
T cd04645 21 GEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG----------CTIGDNCLIGMGA 90 (153)
T ss_pred CCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----------eEECCCCEECCCC
Confidence 345556667777764 4689999999999999986422 578888888888888864 3357777777777
Q ss_pred EEEecCCCeEECCCceeC
Q psy2215 145 SVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 145 vI~i~~pga~IGs~v~ig 162 (172)
.|. .+++|++++.++
T Consensus 91 ~v~---~~~~ig~~~~ig 105 (153)
T cd04645 91 IIL---DGAVIGKGSIVA 105 (153)
T ss_pred EEc---CCCEECCCCEEC
Confidence 776 566666666544
No 86
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.61 E-value=2.2e-07 Score=68.24 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=36.0
Q ss_pred ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
|++++.|+++++|.++ +.||++|.|++++.|++. +.+|++|.|++++++.
T Consensus 1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~---------~~Ig~~~~I~~~~~i~ 50 (119)
T cd03358 1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYEG---------VTIEDDVFIGPNVVFT 50 (119)
T ss_pred CCCCCEECCCcEECCC---cEECCCcEECCCcEEeCC---------eEECCCcEEcCCeEEe
Confidence 3567777777777776 777777878777777655 4457777777777664
No 87
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.59 E-value=2.3e-07 Score=80.41 Aligned_cols=80 Identities=13% Similarity=-0.029 Sum_probs=56.1
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC----Cce-EEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA----KGF-LVYPGSTVYLVFTASVRLKSPFAQIYS 157 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~----~g~-~~~pGd~V~IG~navI~i~~pga~IGs 157 (172)
++.|+.++.|++++.|... ..+.||++|.||+||.|..+...-. .+. ...+||+|+||+||.|. ++++||+
T Consensus 141 gidI~~~a~IG~g~~I~h~-~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Il---ggv~IG~ 216 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHA-TGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKIL---GNIEVGR 216 (273)
T ss_pred eeEecCcceECCCeEEcCC-CCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEc---CCCEECC
Confidence 5778888888888887632 2367777777777776665543210 011 12459999999999999 9999999
Q ss_pred CceeCCeEE
Q psy2215 158 YIIAPCPLH 166 (172)
Q Consensus 158 ~v~iga~i~ 166 (172)
++.+|+...
T Consensus 217 ~a~IGAgSv 225 (273)
T PRK11132 217 GAKIGAGSV 225 (273)
T ss_pred CCEECCCCE
Confidence 999877654
No 88
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.59 E-value=3.5e-07 Score=73.62 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC---C-------CceEEeeCCCe
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF---A-------KGFLVYPGSTV 138 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~---~-------~g~~~~pGd~V 138 (172)
+..|.+.+.|.+ +++||+++.|+++++|..+ +.||++|.|+++++|+.....+ . ..-.+.+|+++
T Consensus 25 ~~~i~~~~~i~~--~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~ 99 (205)
T cd03352 25 GVVIGPGVVIGD--GVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV 99 (205)
T ss_pred CCEECCCCEECC--CCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCE
Confidence 333444444432 5677777777777777766 7888888888888887421100 0 00014559999
Q ss_pred EECCCcEEE-ecCCCeEECCCceeC
Q psy2215 139 YLVFTASVR-LKSPFAQIYSYIIAP 162 (172)
Q Consensus 139 ~IG~navI~-i~~pga~IGs~v~ig 162 (172)
.||+++++. -.+.++.||+++.++
T Consensus 100 ~Ig~~~~i~~~~~~~~~Ig~~~~i~ 124 (205)
T cd03352 100 EIGANTTIDRGALGDTVIGDGTKID 124 (205)
T ss_pred EECCCCEEeccccCCeEECCCCEEC
Confidence 999999996 112345666655533
No 89
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.59 E-value=2.8e-07 Score=83.12 Aligned_cols=75 Identities=13% Similarity=0.253 Sum_probs=45.6
Q ss_pred eeeccceecccCCchhhhhhccccccCCe----------e------ecCCeEecc--cceEECCCeEECCCcEEcCCCcc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGNK----------V------SRKSLVAGA--QNIVLTGKVIIQCDAVLRGDLAN 104 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~----------I------s~~a~I~G~--~nI~Igg~v~I~~~avIrGdl~~ 104 (172)
.+..+|+|.|.++|++++.++...+.... + .+.+.+.|. .+..|+.+|.|+ +|.|+ +
T Consensus 257 ~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~-~~~I~----~ 331 (436)
T PLN02241 257 AYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLR-ECKIE----H 331 (436)
T ss_pred EEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEc-CeEEE----e
Confidence 34467899999999998887776664421 0 011222222 113455555555 55553 3
Q ss_pred eEECCCCeeCCCCEEccC
Q psy2215 105 IRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~ 122 (172)
..||++|.|+++|+|..+
T Consensus 332 svI~~~~~Ig~~~~I~~s 349 (436)
T PLN02241 332 SVVGLRSRIGEGVEIEDT 349 (436)
T ss_pred eEEcCCCEECCCCEEEEe
Confidence 678888888888887654
No 90
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.59 E-value=8.1e-07 Score=65.50 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=58.8
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG 135 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG 135 (172)
++..|.+.+.|.....++||+++.|++++.|... ..++.||++|.|+.++.|.+. +.+|
T Consensus 8 ~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig 78 (107)
T cd05825 8 DNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG---------VTIG 78 (107)
T ss_pred CCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCC---------CEEC
Confidence 4445667788876668999999999999998521 127999999999999999987 5579
Q ss_pred CCeEECCCcEEE
Q psy2215 136 STVYLVFTASVR 147 (172)
Q Consensus 136 d~V~IG~navI~ 147 (172)
+++.||++|+|.
T Consensus 79 ~~~~i~~gs~v~ 90 (107)
T cd05825 79 EGAVVGARSVVV 90 (107)
T ss_pred CCCEECCCCEEe
Confidence 999999999998
No 91
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.58 E-value=3.3e-07 Score=79.24 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=73.7
Q ss_pred cceecccCCch-hhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEc------------CCCc---ceEECCC
Q psy2215 47 RGWWFESKSSH-KILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLR------------GDLA---NIRTGRY 110 (172)
Q Consensus 47 ~g~W~D~~~p~-~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIr------------Gdl~---~V~IG~~ 110 (172)
++||..+.... ....+..+...|-||.+.+.+.- ...|++++++++++.|. +... -+.||++
T Consensus 85 ~~~~~~v~~~~~~~~~~d~~~~~g~RI~p~a~VR~--ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn 162 (271)
T COG2171 85 RGYYDKVDSVDKAPRMLDYFVPEGVRIVPGAIVRL--GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN 162 (271)
T ss_pred ccceeeccccccccchhhhcccCceeecCccEEee--ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC
Confidence 34455554444 23556666777788888887754 46788888888755553 1110 2778888
Q ss_pred CeeCCCCEEccCCccCCCceEEeeCCCeEECCCc-EEEecCCCeEECCCceeCCeE
Q psy2215 111 CIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA-SVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 111 c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na-vI~i~~pga~IGs~v~iga~i 165 (172)
|.||-++.|..--.. ...-++.+||||.||+|+ ++. |+.+|++|++.+.+
T Consensus 163 ~higgGa~I~GVLep-~~a~Pv~IgdncliGAns~~ve----GV~vGdg~VV~aGv 213 (271)
T COG2171 163 SHIGGGASIGGVLEP-LQANPVIIGDNCLIGANSEVVE----GVIVGDGCVVAAGV 213 (271)
T ss_pred cccCCcceEeEEecC-CCCCCeEECCccEeccccceEe----eeEeCCCcEEecce
Confidence 888888887742111 122346779999999999 666 99999999965543
No 92
>KOG1461|consensus
Probab=98.56 E-value=1.6e-07 Score=88.84 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=50.9
Q ss_pred cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCc
Q psy2215 82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYI 159 (172)
Q Consensus 82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v 159 (172)
+++.||-++.|+.++.|+ +-.||++|.||+|++|..+ ++|++|+||.||.|+ |+-.+++|++++
T Consensus 332 ~~~~ig~gT~Ig~g~~I~----NSVIG~~c~IgsN~~I~~S----------~iw~~v~Igdnc~I~~aii~d~v~i~~~~ 397 (673)
T KOG1461|consen 332 ANVVIGAGTKIGSGSKIS----NSVIGANCRIGSNVRIKNS----------FIWNNVTIGDNCRIDHAIICDDVKIGEGA 397 (673)
T ss_pred ceEEecccccccCCCeee----cceecCCCEecCceEEeee----------eeecCcEECCCceEeeeEeecCcEeCCCc
Confidence 345555555555555555 4789999999999999874 469999999999999 666666666666
Q ss_pred e--eCCeEEe
Q psy2215 160 I--APCPLHV 167 (172)
Q Consensus 160 ~--iga~i~~ 167 (172)
. .||+++.
T Consensus 398 ~l~~g~vl~~ 407 (673)
T KOG1461|consen 398 ILKPGSVLGF 407 (673)
T ss_pred ccCCCcEEee
Confidence 5 3555543
No 93
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.56 E-value=3.4e-07 Score=78.08 Aligned_cols=61 Identities=21% Similarity=0.155 Sum_probs=43.1
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV 146 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI 146 (172)
|++.+.|.. +..|++++.|+++|+|.++ +.||++|.|+++++|+++. .+|+++.|+++++|
T Consensus 2 Ihp~a~I~~--~a~Ig~~v~Igp~~~I~~~---v~IG~~~~I~~~~~I~~~~---------~IG~~~~I~~~a~I 62 (255)
T PRK12461 2 IHPTAVIDP--SAKLGSGVEIGPFAVIGAN---VEIGDGTWIGPHAVILGPT---------RIGKNNKIHQGAVV 62 (255)
T ss_pred cCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCcEEccCCEEeCCC---------EECCCCEEccCcEe
Confidence 344555543 5678888999999999877 8888888888888888763 34555555555554
No 94
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.56 E-value=3.1e-07 Score=81.47 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
+..|...+.|.+ ++.||.++.|+++|+|++ ..||++|.|+++|.|.
T Consensus 267 ~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~----~~i~~~~~I~~~~~i~ 312 (451)
T TIGR01173 267 DVEIDPNVILEG--KVKIGDDVVIGPGCVIKN----SVIGSNVVIKAYSVLE 312 (451)
T ss_pred CCEEcCCeEEeC--ceEECCCCEECCCcEEee----eEecCCCEEeeecEEe
Confidence 345566666665 578888889988888873 5666666666554443
No 95
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.55 E-value=7.3e-07 Score=64.21 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCC----------------CcceEECCCCeeCCCCEEccCCccCCCceEE
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD----------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLV 132 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd----------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~ 132 (172)
+..|.+.+.|.+..++.||+++.|+++|+|... ..++.||++|.|++++.|.+. .
T Consensus 7 ~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~---------~ 77 (109)
T cd04647 7 NVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG---------V 77 (109)
T ss_pred CcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC---------C
Confidence 345666777877678999999999999999743 237889999999999999876 4
Q ss_pred eeCCCeEECCCcEEE
Q psy2215 133 YPGSTVYLVFTASVR 147 (172)
Q Consensus 133 ~pGd~V~IG~navI~ 147 (172)
.+|++++||+++.|.
T Consensus 78 ~ig~~~~i~~~~~v~ 92 (109)
T cd04647 78 TIGDGAVVGAGSVVT 92 (109)
T ss_pred EECCCCEECCCCEEe
Confidence 468889999998888
No 96
>PLN02739 serine acetyltransferase
Probab=98.53 E-value=3.2e-07 Score=82.05 Aligned_cols=58 Identities=14% Similarity=-0.044 Sum_probs=35.0
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH 166 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~ 166 (172)
+.||++|.|..+++|+...+.. +.-...+||+|+||+||+|. ++++||+++.+|+...
T Consensus 232 avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V~IGagA~Il---G~V~IGd~aiIGAGSV 289 (355)
T PLN02739 232 AVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGALLGACVTIL---GNISIGAGAMVAAGSL 289 (355)
T ss_pred CEECCCCEEcCCceeCCcCCcC-CCCCcEECCCCEEcCCCEEe---CCeEECCCCEECCCCE
Confidence 4455555555555554321110 00113458899999999888 7788888888776643
No 97
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.53 E-value=8.8e-07 Score=76.73 Aligned_cols=57 Identities=11% Similarity=-0.048 Sum_probs=37.2
Q ss_pred eEECCCCeeCCCCEEccCCccCC-----CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFA-----KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~-----~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~ 164 (172)
+.||.+|.||+||.|.+....-. ......+||+|+||++|+|. +++.||+++++++.
T Consensus 145 a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~---~Gv~IGdgavIgag 206 (272)
T PRK11830 145 ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVV---EGVIVEEGSVLGMG 206 (272)
T ss_pred cEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEc---CCCEECCCCEEcCC
Confidence 45566666666666665542100 00125669999999999997 78899998885543
No 98
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.53 E-value=8.3e-07 Score=64.38 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=43.8
Q ss_pred eEECCCeEECCCcEEcCCCcc------eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLAN------IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYS 157 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~------V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs 157 (172)
++|++++.|++++.|... .. +.||++|.|++++.|+.....- ..-...+||+++|++++.+. ++++||+
T Consensus 3 ~~i~~~~~ig~~~~i~~~-~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~-~~~~~~Ig~~~~Ig~~~~i~---~~~~Ig~ 77 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHG-TGIVIGETAVIGDNCTIYQGVTLGGKGKGG-GKRHPTIGDNVVIGAGAKIL---GNITIGD 77 (101)
T ss_pred eEeCCCCEECCCEEECCC-CeEEECCCCEECCCCEEcCCCEECCCccCC-cCCCCEECCCcEEcCCCEEE---CcCEECC
Confidence 556666666666666432 22 4444444444444444432200 00013468999999999988 7788888
Q ss_pred CceeCCe
Q psy2215 158 YIIAPCP 164 (172)
Q Consensus 158 ~v~iga~ 164 (172)
++.+++.
T Consensus 78 ~~~i~~~ 84 (101)
T cd03354 78 NVKIGAN 84 (101)
T ss_pred CCEECCC
Confidence 8875443
No 99
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.52 E-value=5.8e-07 Score=80.20 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=43.3
Q ss_pred eccce--ecccCCchhhhhhccc---------cccCCe-eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCe
Q psy2215 45 LSRGW--WFESKSSHKILVYSGA---------VASGNK-VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCI 112 (172)
Q Consensus 45 ~~~g~--W~D~~~p~~Ll~~~~~---------~~~gn~-Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~ 112 (172)
...+. |.+.++|.+|..+..+ ...+.. +++...+.+ .++.||.++.|++++.|.++ +.||++|.
T Consensus 206 ~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~Ig~~~~i~~~~~I~~~---~~ig~~~~ 281 (448)
T PRK14357 206 KTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIH-YDVEIGMDTIIYPMTFIEGK---TRIGEDCE 281 (448)
T ss_pred ecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEc-cceEECCCcEEcCCcEEEee---eEECCCcE
Confidence 34566 6667788877553222 223333 233333444 26777777777777777765 77777777
Q ss_pred eCCCCEEc
Q psy2215 113 ISKGVVIR 120 (172)
Q Consensus 113 Ig~navI~ 120 (172)
|+++|+|.
T Consensus 282 I~~~~~i~ 289 (448)
T PRK14357 282 IGPMTRIV 289 (448)
T ss_pred ECCCceec
Confidence 77776543
No 100
>PLN02694 serine O-acetyltransferase
Probab=98.52 E-value=3.9e-07 Score=79.81 Aligned_cols=80 Identities=13% Similarity=-0.007 Sum_probs=58.6
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc----e-EEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG----F-LVYPGSTVYLVFTASVRLKSPFAQIYS 157 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g----~-~~~pGd~V~IG~navI~i~~pga~IGs 157 (172)
+|.|+.++.|++++.|... ..+.||++|.||+||.|..+...-..+ . ...+||+|+||+||+|. ++++||+
T Consensus 160 gvdI~p~A~IG~gv~Idh~-tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Il---ggi~IGd 235 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATIL---GNVKIGE 235 (294)
T ss_pred eEEeCCcceecCCEEEeCC-CCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEEC---CCCEECC
Confidence 4788888888888888742 348888888888888888654321110 0 13459999999999998 7899999
Q ss_pred CceeCCeEE
Q psy2215 158 YIIAPCPLH 166 (172)
Q Consensus 158 ~v~iga~i~ 166 (172)
++.+|+...
T Consensus 236 ~a~IGAgSV 244 (294)
T PLN02694 236 GAKIGAGSV 244 (294)
T ss_pred CCEECCCCE
Confidence 998776543
No 101
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.51 E-value=7.4e-07 Score=61.44 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=33.5
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIA 161 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~i 161 (172)
..|+.++.|++++.|. + ..||++|.|++++.|... ..++++.|++++.+. .++.|++++.+
T Consensus 17 s~ig~~~~Ig~~~~i~-~---svi~~~~~i~~~~~i~~s----------vv~~~~~i~~~~~i~---~~~~ig~~~~i 77 (79)
T cd03356 17 SVIGDNVRIGDGVTIT-N---SILMDNVTIGANSVIVDS----------IIGDNAVIGENVRVV---NLCIIGDDVVV 77 (79)
T ss_pred CEECCCCEECCCCEEe-C---CEEeCCCEECCCCEEECC----------EECCCCEECCCCEEc---CCeEECCCeEE
Confidence 3455555555555554 2 445666666666655532 236666666666666 33666655554
No 102
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.49 E-value=5.9e-07 Score=72.31 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
++..+++.+.|. .+..|+++++|+++|+|.++ ++||++|.|+++++|+.. ..+|++|.|+++++|.
T Consensus 6 ~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 6 ENVSIGPNAVIG--EGVVIGDGVVIGPGVVIGDG---VVIGDDCVIHPNVTIYEG---------CIIGDRVIIHSGAVIG 71 (205)
T ss_pred CCCEECCCCEEC--CCCEECCCCEECCCCEECCC---CEECCCCEECCCCEEcCC---------CEECCCcEECCCCEEc
Confidence 455566666664 36788999999999999877 999999999999999987 4568999999999884
Q ss_pred -e---------------cCCCeEECCCceeCCe
Q psy2215 148 -L---------------KSPFAQIYSYIIAPCP 164 (172)
Q Consensus 148 -i---------------~~pga~IGs~v~iga~ 164 (172)
- .+..+.|++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~ 104 (205)
T cd03352 72 SDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGAN 104 (205)
T ss_pred CCCceeEecCCcEEEcCCcceEEECCCEEECCC
Confidence 0 0125788888886554
No 103
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.49 E-value=7.8e-07 Score=71.23 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=50.7
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce---EEeeCCCeEECCCcEEEecCCCeE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF---LVYPGSTVYLVFTASVRLKSPFAQ 154 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~---~~~pGd~V~IG~navI~i~~pga~ 154 (172)
.+.|+.++.|+++|.|.++ +.||++|.|+++|.|+... .. ..+. ...++++++||+++.|. +++.
T Consensus 15 ~v~ig~~~~I~~~a~i~~~---~~Ig~~~~I~~~~~I~~~~-Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~---~~~~ 87 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGK---TVIGEDCVIGPNCVIKDST-IGDGVVIKASSVIEGAVIGNGATVGPFAHLR---PGTV 87 (193)
T ss_pred CeEECCCcEECCCCEEeCc---CEECCCCEECCCcEEeCCE-ECCCCEEcCCeEEEeeEECCCCEECCccEEc---CccE
Confidence 5888999999999999876 8999999999999888651 10 1111 12336777777777776 5566
Q ss_pred ECCCceeCC
Q psy2215 155 IYSYIIAPC 163 (172)
Q Consensus 155 IGs~v~iga 163 (172)
|++++.++.
T Consensus 88 Ig~~~~Ig~ 96 (193)
T cd03353 88 LGEGVHIGN 96 (193)
T ss_pred ECCCCEECC
Confidence 665555443
No 104
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=3.9e-07 Score=83.35 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=66.8
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-----Ccc--CCCceEEeeCCCeE
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-----FKK--FAKGFLVYPGSTVY 139 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-----~~~--~~~g~~~~pGd~V~ 139 (172)
..|-.+..-++++=...+.||.++.|.++++|+|. +.||++|.||++|+|... ... |+-......|+++.
T Consensus 252 ~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~ 328 (460)
T COG1207 252 LAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGAT 328 (460)
T ss_pred HcCcEEeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcc
Confidence 45544433333333346899999999999999998 889999999988665543 221 11111123499999
Q ss_pred ECCCcEEEecCCCeEECCCceeCCeEEec
Q psy2215 140 LVFTASVRLKSPFAQIYSYIIAPCPLHVH 168 (172)
Q Consensus 140 IG~navI~i~~pga~IGs~v~iga~i~~~ 168 (172)
||+.+.++ |++.|++++++|.-++-+
T Consensus 329 VGPfA~LR---Pg~~L~~~~hIGNFVEvK 354 (460)
T COG1207 329 VGPFARLR---PGAVLGADVHIGNFVEVK 354 (460)
T ss_pred cCCccccC---CcCcccCCCeEeeeEEEe
Confidence 99999999 999999988877766554
No 105
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.48 E-value=1.1e-06 Score=71.45 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------------------CcceEECCCCeeCCCCEEccCC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------------------LANIRTGRYCIISKGVVIRPPF 123 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------------------l~~V~IG~~c~Ig~navI~p~~ 123 (172)
++..+...+.|....++.||+++.|++++.|.+. ..++.||++|.||++++|.++
T Consensus 70 ~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g- 148 (192)
T PRK09677 70 DNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPG- 148 (192)
T ss_pred CCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCC-
Confidence 3444556667665568999999999999999742 136899999999999999998
Q ss_pred ccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 124 KKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 124 ~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
+.+|++++||++|+|. . .|.+++.
T Consensus 149 --------~~Ig~~~~Iga~s~v~----~-~i~~~~~ 172 (192)
T PRK09677 149 --------VSIGNGCIVGANSVVT----K-SIPENTV 172 (192)
T ss_pred --------CEECCCCEECCCCEEC----c-ccCCCcE
Confidence 5579999999999999 3 2555555
No 106
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.48 E-value=3.8e-07 Score=81.30 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=22.2
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
+..|++++.|++++.|.++ +.||++|.|+++++|.
T Consensus 262 ~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~ 296 (450)
T PRK14360 262 TVELGPDVIIEPQTHLRGN---TVIGSGCRIGPGSLIE 296 (450)
T ss_pred CEEECCCCEECCCCEEeCC---cEECCCCEECCCcEEE
Confidence 4556666666666666655 6666666666666554
No 107
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.47 E-value=8.3e-07 Score=73.66 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=56.8
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS 136 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd 136 (172)
+...+.|.+..+|.||+++.|+++|.|..+ ..+|+||++|.||.+++|.++ +.+|+
T Consensus 84 In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g---------v~IG~ 154 (203)
T PRK09527 84 ANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---------VTIGD 154 (203)
T ss_pred ECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC---------CEECC
Confidence 455677777678999999999999999732 126999999999999999998 55799
Q ss_pred CeEECCCcEEE
Q psy2215 137 TVYLVFTASVR 147 (172)
Q Consensus 137 ~V~IG~navI~ 147 (172)
+++||++++|.
T Consensus 155 ~~vIgagsvV~ 165 (203)
T PRK09527 155 NSVIGAGSVVT 165 (203)
T ss_pred CCEECCCCEEc
Confidence 99999999998
No 108
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.46 E-value=9.2e-07 Score=76.59 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=32.7
Q ss_pred ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCc
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYI 159 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v 159 (172)
++.||++|.||++|.|.++ +.+|+++.||++++|. ++++|++..
T Consensus 173 ~ViIgDnv~IGa~a~I~~G---------V~IG~gavIGaGavI~---~~~~I~~~~ 216 (269)
T TIGR00965 173 PTIIEDNCFIGARSEIVEG---------VIVEEGSVISMGVFIG---QSTKIYDRE 216 (269)
T ss_pred CeEECCCCEECCCCEEcCC---------CEECCCCEEeCCCEEC---CCCEEeccc
Confidence 5778888888888888776 4457777777777777 777777654
No 109
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.46 E-value=2.1e-06 Score=59.95 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=54.2
Q ss_pred ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce-eC
Q psy2215 86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII-AP 162 (172)
Q Consensus 86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~-ig 162 (172)
|++++.|++++.|+ + ..||++|.|+++|.|+.. ..+++++||++|.|. ++++++.|++++. .+
T Consensus 2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~~s----------~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~ 67 (81)
T cd04652 2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKITNC----------VIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD 67 (81)
T ss_pred ccCCCEECCCCEEe-C---cEECCCCEECCCCEEeCc----------EEeCCCEECCCCEEeccEEeCCCEECCCCEEcc
Confidence 67889999999987 4 789999999999999863 358999999999999 6677777777766 34
Q ss_pred CeEEe
Q psy2215 163 CPLHV 167 (172)
Q Consensus 163 a~i~~ 167 (172)
|.+++
T Consensus 68 ~ii~~ 72 (81)
T cd04652 68 CLVGS 72 (81)
T ss_pred CEECC
Confidence 44443
No 110
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.43 E-value=3e-06 Score=57.85 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=54.6
Q ss_pred CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEec
Q psy2215 70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLK 149 (172)
Q Consensus 70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~ 149 (172)
-.|.+.+.|. +..|+.++.|++++.|+ + ..|+++|.|++++.|.. ..+++++.||+++.|.
T Consensus 6 ~~I~~~~~i~---~s~ig~~~~ig~~~~i~-~---s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~-- 66 (79)
T cd05787 6 TSIGEGTTIK---NSVIGRNCKIGKNVVID-N---SYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIP-- 66 (79)
T ss_pred CEECCCCEEe---ccEECCCCEECCCCEEe-C---cEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEEC--
Confidence 3445556554 35778888888888887 3 67888888888888863 3458888888888888
Q ss_pred CCCeEECCCceeC
Q psy2215 150 SPFAQIYSYIIAP 162 (172)
Q Consensus 150 ~pga~IGs~v~ig 162 (172)
+++.|++++.+|
T Consensus 67 -~~~~v~~~~~ig 78 (79)
T cd05787 67 -PGSLISFGVVIG 78 (79)
T ss_pred -CCCEEeCCcEeC
Confidence 778888887665
No 111
>PLN02357 serine acetyltransferase
Probab=98.43 E-value=1.4e-06 Score=78.22 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=49.5
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC----Cce-EEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA----KGF-LVYPGSTVYLVFTASVRLKSPFAQIYSY 158 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~----~g~-~~~pGd~V~IG~navI~i~~pga~IGs~ 158 (172)
+.|+.++.|++++.|... ..+.||++|.||++|.|..+...-. .+. ...+||+|+||+||.|. .+++||++
T Consensus 227 vdI~p~a~IG~Gv~Idh~-~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il---ggV~IGdg 302 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHA-TGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL---GNITIGEG 302 (360)
T ss_pred eeeCCCCEECCCeEECCC-CceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEE---CCeEECCC
Confidence 566777777777766642 2255555555555555554432110 111 13459999999999998 78889999
Q ss_pred ceeCCeEE
Q psy2215 159 IIAPCPLH 166 (172)
Q Consensus 159 v~iga~i~ 166 (172)
+.+|+...
T Consensus 303 a~IGAgSV 310 (360)
T PLN02357 303 AKIGAGSV 310 (360)
T ss_pred CEECCCCE
Confidence 88777544
No 112
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.42 E-value=1.8e-06 Score=70.29 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=53.7
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS 136 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd 136 (172)
+...+.|.....|+||+++.|+++|.|... ..++.||++|.||.+|+|.+. +.+|+
T Consensus 82 in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g---------v~IG~ 152 (183)
T PRK10092 82 ANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---------VTIGD 152 (183)
T ss_pred ECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCC---------CEECC
Confidence 344556655556899999999999999632 137999999999999999987 45688
Q ss_pred CeEECCCcEEE
Q psy2215 137 TVYLVFTASVR 147 (172)
Q Consensus 137 ~V~IG~navI~ 147 (172)
++.||++++|.
T Consensus 153 ~~vIgagsvV~ 163 (183)
T PRK10092 153 NVVVASGAVVT 163 (183)
T ss_pred CCEECCCCEEc
Confidence 88888888888
No 113
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.42 E-value=3.5e-06 Score=58.70 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=36.1
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
..|++++.|+++++|. +..|+++|.|++++.|... ..++++.||+++.+. .++.||+++.++
T Consensus 18 ~~Ig~~~~Ig~~~~i~----~sii~~~~~i~~~~~i~~s----------ii~~~~~v~~~~~~~---~~~~ig~~~~i~ 79 (80)
T cd05824 18 VVIGPNVTIGDGVRLQ----RCVILSNSTVRDHSWVKSS----------IVGWNSTVGRWTRLE---NVTVLGDDVTIK 79 (80)
T ss_pred CEECCCCEECCCcEEe----eeEEcCCCEECCCCEEeCC----------EEeCCCEECCCcEEe---cCEEECCceEEC
Confidence 3444444444444443 2455555555555555542 347778888888777 447777777655
No 114
>PRK10191 putative acyl transferase; Provisional
Probab=98.42 E-value=2.5e-06 Score=67.48 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=36.2
Q ss_pred eEECCCeEECCCcEEcCC----CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 84 IVLTGKVIIQCDAVLRGD----LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGd----l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+.||+++.|+++++|... ...+.||++|.||+++.|.++ +.+||+++||++++|.
T Consensus 68 ~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~---------v~IG~~~~Igags~V~ 126 (146)
T PRK10191 68 VVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGD---------ITIGNNVTVGAGSVVL 126 (146)
T ss_pred cEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC---------CEECCCCEECCCCEEC
Confidence 444445555555555311 123577777888878777776 5569999999999888
No 115
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.42 E-value=1.7e-06 Score=60.30 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=41.0
Q ss_pred CCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 87 TGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 87 gg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+.++.|++++.|.++ +.||++|.|+++|.|... ..++++.|++++.|. ++.+++++.++
T Consensus 3 ~~~~~I~~~~~i~~~---~~Ig~~~~Ig~~~~i~~s----------ii~~~~~i~~~~~i~----~sii~~~~~v~ 61 (80)
T cd05824 3 DPSAKIGKTAKIGPN---VVIGPNVTIGDGVRLQRC----------VILSNSTVRDHSWVK----SSIVGWNSTVG 61 (80)
T ss_pred CCCCEECCCCEECCC---CEECCCCEECCCcEEeee----------EEcCCCEECCCCEEe----CCEEeCCCEEC
Confidence 456667777776655 677777888777777753 358899999999998 45555444433
No 116
>PRK10502 putative acyl transferase; Provisional
Probab=98.41 E-value=2e-06 Score=69.40 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=58.7
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG 135 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG 135 (172)
++..|.+.+.|.....++||+++.|++++.|... ..++.||++|.||.+++|.+. +.+|
T Consensus 76 ~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~G---------v~Ig 146 (182)
T PRK10502 76 DYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPG---------VTIG 146 (182)
T ss_pred CCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCC---------CEEC
Confidence 4455666777776668999999999999998532 137999999999999999998 5579
Q ss_pred CCeEECCCcEEE
Q psy2215 136 STVYLVFTASVR 147 (172)
Q Consensus 136 d~V~IG~navI~ 147 (172)
+++.||+++++.
T Consensus 147 ~~~vIga~svV~ 158 (182)
T PRK10502 147 SGAVVGARSSVF 158 (182)
T ss_pred CCCEECCCCEEe
Confidence 999999999988
No 117
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.41 E-value=1.4e-06 Score=78.54 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=35.5
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
|...+.|.+ ++.||+++.|+++|+|++ ..||++|.|+++|+|... .+|+++.||++++|.
T Consensus 277 I~~~~~I~~--~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~----------~i~~~~~ig~~~~i~ 336 (459)
T PRK14355 277 IYPGVCISG--DTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDS----------VVGDDVAIGPMAHLR 336 (459)
T ss_pred EeCCcEEeC--CCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCC----------EECCCCEECCCCEEC
Confidence 333444433 567777777777777753 677777777777766432 235555555555444
No 118
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.40 E-value=1.5e-06 Score=79.39 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=51.4
Q ss_pred cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-----CccCCCce--EEeeCCCeEECCCcEEEecCCCeE
Q psy2215 82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-----FKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQ 154 (172)
Q Consensus 82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-----~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~ 154 (172)
.++.||+++.|+++|+|.++ +.||++|.|+++|+|+.. ...-+... ....|+++.||+++.|. +++.
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~---v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~---~~~~ 342 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQ---TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLR---PGTV 342 (481)
T ss_pred CCcEECCCCEEeCCcEEeCC---cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEc---CCcE
Confidence 46788899999999999887 777777777777666432 11000000 02347788888887777 6677
Q ss_pred ECCCceeCCeEE
Q psy2215 155 IYSYIIAPCPLH 166 (172)
Q Consensus 155 IGs~v~iga~i~ 166 (172)
||+++.++..++
T Consensus 343 Ig~~~~Ig~~~~ 354 (481)
T PRK14358 343 LGEGVHIGNFVE 354 (481)
T ss_pred ECCCCEECCCEE
Confidence 777777665433
No 119
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.39 E-value=4.5e-06 Score=57.46 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=48.0
Q ss_pred ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
|+.++.|++++.|. + ..||++|.|++++.|... .++++++||++|.|. ++++++.|++++.
T Consensus 2 ig~~~~I~~~~~i~-~---s~ig~~~~Ig~~~~i~~s----------vi~~~~~i~~~~~i~~svv~~~~~i~~~~~ 64 (79)
T cd03356 2 IGESTVIGENAIIK-N---SVIGDNVRIGDGVTITNS----------ILMDNVTIGANSVIVDSIIGDNAVIGENVR 64 (79)
T ss_pred ccCCcEECCCCEEe-C---CEECCCCEECCCCEEeCC----------EEeCCCEECCCCEEECCEECCCCEECCCCE
Confidence 56788888888886 3 789999999999999863 358999999999998 5556666666555
No 120
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.37 E-value=1.6e-06 Score=77.51 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=40.2
Q ss_pred eeecCCeEecc----cceEECCCeEECCCcEEcCC-------------CcceEECCCCeeCCCCEEccCCccCCCceEEe
Q psy2215 71 KVSRKSLVAGA----QNIVLTGKVIIQCDAVLRGD-------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVY 133 (172)
Q Consensus 71 ~Is~~a~I~G~----~nI~Igg~v~I~~~avIrGd-------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~ 133 (172)
.+...+.|.|. .++.||.++.|+++|+|++- +.++.||++|.||+++.|++. ..
T Consensus 271 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~ 341 (456)
T PRK14356 271 TIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AV 341 (456)
T ss_pred EECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CE
Confidence 44444555442 14566666666666665531 002334444444444444433 23
Q ss_pred eCCCeEECCCcEEE--ecCCCeEECCC
Q psy2215 134 PGSTVYLVFTASVR--LKSPFAQIYSY 158 (172)
Q Consensus 134 pGd~V~IG~navI~--i~~pga~IGs~ 158 (172)
+|+++.||+++.+. ++++++.+++.
T Consensus 342 ig~~~~ig~~~~i~~~~i~~~~~i~~~ 368 (456)
T PRK14356 342 LEEGARVGNFVEMKKAVLGKGAKANHL 368 (456)
T ss_pred ECCCCEecCCceeeeeEecCCcEeccc
Confidence 47777777777776 55555444433
No 121
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.36 E-value=1.8e-06 Score=77.64 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=33.4
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
+..|.+.+.|.| ++.||.++.|+++|+|+ + ..||++|.|++++.|.
T Consensus 271 ~~~I~~~~~i~~--~v~ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~ 316 (456)
T PRK09451 271 DVEIDTNVIIEG--NVTLGNRVKIGAGCVLK-N---CVIGDDCEISPYSVVE 316 (456)
T ss_pred CCEEcCCeEEec--CcEECCCCEECCCceEe-c---CEEcCCCEEcCCEEEe
Confidence 445666777766 67888889998888886 3 6677777776666665
No 122
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.36 E-value=2.1e-06 Score=76.60 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=28.9
Q ss_pred eEECCCeEECCCcEEcCCC--cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 84 IVLTGKVIIQCDAVLRGDL--ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl--~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
..|++++.|+++|+|.... .++.||++|.|+++++|++. ..+|++|.||++|.|.
T Consensus 281 ~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~~~~Ig~~~~i~ 337 (446)
T PRK14353 281 VVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPG---------AELGEGAKVGNFVEVK 337 (446)
T ss_pred CEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEecc---------ceecCCeEEcCceEEe
Confidence 3444444444444443321 13556666666666666544 3347777777777665
No 123
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.35 E-value=4.5e-06 Score=61.48 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=50.2
Q ss_pred cCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCC
Q psy2215 74 RKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSP 151 (172)
Q Consensus 74 ~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~p 151 (172)
+.+.|. +..||.++.|+ ++.|+ ...||++|.|++++.|... .+++++.||++|.+. ++.+
T Consensus 6 ~~~~i~---~s~Ig~~~~I~-~~~I~----~svi~~~~~Ig~~~~I~~s----------iI~~~~~Ig~~~~i~~siig~ 67 (104)
T cd04651 6 RRGEVK---NSLVSEGCIIS-GGTVE----NSVLFRGVRVGSGSVVEDS----------VIMPNVGIGRNAVIRRAIIDK 67 (104)
T ss_pred CCCEEE---eEEECCCCEEc-CeEEE----eCEEeCCCEECCCCEEEEe----------EEcCCCEECCCCEEEeEEECC
Confidence 345443 34566677776 66665 2678888888888888753 358899999999998 4455
Q ss_pred CeEECCCceeCCeEEe
Q psy2215 152 FAQIYSYIIAPCPLHV 167 (172)
Q Consensus 152 ga~IGs~v~iga~i~~ 167 (172)
++.|++++.++...++
T Consensus 68 ~~~Ig~~~~v~~~~~~ 83 (104)
T cd04651 68 NVVIPDGVVIGGDPEE 83 (104)
T ss_pred CCEECCCCEECCCccc
Confidence 5555555554444333
No 124
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.35 E-value=2.9e-06 Score=77.54 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=37.5
Q ss_pred eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc-----CCccCCCce----EEeeCCCeEEC
Q psy2215 71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP-----PFKKFAKGF----LVYPGSTVYLV 141 (172)
Q Consensus 71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p-----~~~~~~~g~----~~~pGd~V~IG 141 (172)
.|...+.|.| ++.||.++.|+++|+|. + ..||++|.|+++++|.. .... ..+. .+.+|+++.||
T Consensus 278 ~I~~~~~I~~--~v~Ig~~~~I~~~~~i~-~---svI~~~~~I~~~~~i~~~~ig~~~~i-g~~~~i~~~~~Ig~~~~Ig 350 (481)
T PRK14358 278 TIEPGVLLRG--QTRVADGVTIGAYSVVT-D---SVLHEGAVIKPHSVLEGAEVGAGSDV-GPFARLRPGTVLGEGVHIG 350 (481)
T ss_pred EEeCCcEEeC--CcEECCCCEECCCCEEe-e---eEECCCCEEeecceecCCeEeCceEE-CCccEEcCCcEECCCCEEC
Confidence 4445555555 46677777777777774 2 45666666655554432 1110 0000 03347777777
Q ss_pred CCcEEE
Q psy2215 142 FTASVR 147 (172)
Q Consensus 142 ~navI~ 147 (172)
+++.|.
T Consensus 351 ~~~~i~ 356 (481)
T PRK14358 351 NFVETK 356 (481)
T ss_pred CCEEEC
Confidence 766654
No 125
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.32 E-value=3.4e-06 Score=70.03 Aligned_cols=81 Identities=16% Similarity=0.025 Sum_probs=50.4
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC----CCceEE-eeCCCeEECCCcEEEecCCCeEECCC
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF----AKGFLV-YPGSTVYLVFTASVRLKSPFAQIYSY 158 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~----~~g~~~-~pGd~V~IG~navI~i~~pga~IGs~ 158 (172)
+.|+..+.|+++..|.= -..|.||+-+.||+||.|+.....= .++-.. .+|++|.||++|.|. .+.+||++
T Consensus 68 ieIhp~A~IG~g~fIdH-g~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkIL---G~I~IGd~ 143 (194)
T COG1045 68 IEIHPGAKIGRGLFIDH-GTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKIL---GNIEIGDN 143 (194)
T ss_pred eeeCCCCeECCceEEcC-CceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEE---cceEECCC
Confidence 66677777777666651 1236666666666666655443210 111101 338999999999888 77888888
Q ss_pred ceeCCeEEec
Q psy2215 159 IIAPCPLHVH 168 (172)
Q Consensus 159 v~iga~i~~~ 168 (172)
+.+||+..-+
T Consensus 144 akIGA~sVVl 153 (194)
T COG1045 144 AKIGAGSVVL 153 (194)
T ss_pred CEECCCceEc
Confidence 8888776544
No 126
>KOG1461|consensus
Probab=98.31 E-value=1.5e-06 Score=82.40 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=58.3
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
|-.||.+|.|+.+++|.+ ..|+++|.||+||.|+.. .++|+|.|+++|++. ||+.||.+|++|
T Consensus 350 NSVIG~~c~IgsN~~I~~----S~iw~~v~Igdnc~I~~a----------ii~d~v~i~~~~~l~---~g~vl~~~VVv~ 412 (673)
T KOG1461|consen 350 NSVIGANCRIGSNVRIKN----SFIWNNVTIGDNCRIDHA----------IICDDVKIGEGAILK---PGSVLGFGVVVG 412 (673)
T ss_pred cceecCCCEecCceEEee----eeeecCcEECCCceEeee----------EeecCcEeCCCcccC---CCcEEeeeeEeC
Confidence 558889999999999986 789999999999999974 359999999999999 999999999977
Q ss_pred CeEE
Q psy2215 163 CPLH 166 (172)
Q Consensus 163 a~i~ 166 (172)
....
T Consensus 413 ~~~~ 416 (673)
T KOG1461|consen 413 RNFV 416 (673)
T ss_pred CCcc
Confidence 6543
No 127
>KOG4042|consensus
Probab=98.31 E-value=1.9e-06 Score=69.84 Aligned_cols=93 Identities=22% Similarity=0.186 Sum_probs=68.2
Q ss_pred eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc----CCCc----------eEE----
Q psy2215 71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK----FAKG----------FLV---- 132 (172)
Q Consensus 71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~----~~~g----------~~~---- 132 (172)
-+.-++.|.| .|+|+++++++|.+++..+..||.||++|+|.|-++|+..... -+.+ |.+
T Consensus 16 vVCvEs~irG--dvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s 93 (190)
T KOG4042|consen 16 VVCVESDIRG--DVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS 93 (190)
T ss_pred EEEEeccccc--ceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence 3445666777 6999999999999999999999999999999999999852210 0112 111
Q ss_pred ---eeCCCeEECCCcEEEecCCCeEECCCceeCC--eEEec
Q psy2215 133 ---YPGSTVYLVFTASVRLKSPFAQIYSYIIAPC--PLHVH 168 (172)
Q Consensus 133 ---~pGd~V~IG~navI~i~~pga~IGs~v~iga--~i~~~ 168 (172)
+.||+-.|+..|.+. +|+++-++|.+|| +++.+
T Consensus 94 ~A~kvGd~NVieskayvg---~gv~vssgC~vGA~c~v~~~ 131 (190)
T KOG4042|consen 94 SAKKVGDRNVIESKAYVG---DGVSVSSGCSVGAKCTVFSH 131 (190)
T ss_pred hhhhhcCcceEeeeeEec---CCcEEcCCceeccceEEecc
Confidence 228888888888888 8888888888554 44444
No 128
>KOG3121|consensus
Probab=98.27 E-value=1.1e-06 Score=70.67 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=55.6
Q ss_pred cCCeee-cCCeEecc-cceEECCCeEECCCcEEcCCCc---------ceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215 68 SGNKVS-RKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA---------NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS 136 (172)
Q Consensus 68 ~gn~Is-~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~---------~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd 136 (172)
.|..|- ..+.|.|. .|+.+|..+++.++++||.... |+.||+++.|+|+|++....- |--+..|.
T Consensus 37 nGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqI----gsyVh~Gk 112 (184)
T KOG3121|consen 37 NGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQI----GSYVHLGK 112 (184)
T ss_pred cCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhh----eeeeEecc
Confidence 344433 35677885 8999999999999999997643 999999999999999987631 11134466
Q ss_pred CeEECCCcEEE
Q psy2215 137 TVYLVFTASVR 147 (172)
Q Consensus 137 ~V~IG~navI~ 147 (172)
++.||.+|+++
T Consensus 113 naviGrrCVlk 123 (184)
T KOG3121|consen 113 NAVIGRRCVLK 123 (184)
T ss_pred ceeEcCceEhh
Confidence 66666666665
No 129
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.26 E-value=5.2e-06 Score=74.03 Aligned_cols=31 Identities=3% Similarity=-0.156 Sum_probs=23.9
Q ss_pred EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
+.+||+|+||.+++|. ++++||+++.+++..
T Consensus 391 ~~Ig~~~~iG~~~~i~---~~~~ig~~~~v~~~~ 421 (450)
T PRK14360 391 TVIGDRSKTGANSVLV---APITLGEDVTVAAGS 421 (450)
T ss_pred cEeCCCeEeCCCCEEe---CCcEECCCCEECCCC
Confidence 4558888888888888 888888888865543
No 130
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.6e-06 Score=75.56 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=79.9
Q ss_pred ceeeeccceecccCCchhhhhhcccccc-CCee---ecCCeEecc----c-----ceEECCCeEECCCcEEcCCCcceEE
Q psy2215 41 AVDFLSRGWWFESKSSHKILVYSGAVAS-GNKV---SRKSLVAGA----Q-----NIVLTGKVIIQCDAVLRGDLANIRT 107 (172)
Q Consensus 41 ~~~~~~~g~W~D~~~p~~Ll~~~~~~~~-gn~I---s~~a~I~G~----~-----nI~Igg~v~I~~~avIrGdl~~V~I 107 (172)
+..+..+|+|.|+|+-....++|=..++ .+.. .++-.|+.. + +-..-.++.|..||+|.|.+.+-.|
T Consensus 235 v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL 314 (393)
T COG0448 235 VYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVL 314 (393)
T ss_pred EEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEeEEEeeEE
Confidence 6778899999999998876655543333 1111 011122220 0 0011356788999999998778888
Q ss_pred CCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCCe
Q psy2215 108 GRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPCP 164 (172)
Q Consensus 108 G~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga~ 164 (172)
++++.|+++|+|..+ + +-.+|.||+||+|+ |++.+|.|++++.++..
T Consensus 315 ~~~v~I~~gs~i~~s---------v-im~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 315 FRGVRIGKGSVIENS---------V-IMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ecCeEECCCCEEEee---------E-EeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 888888888888875 2 23469999999999 88899999999887655
No 131
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.22 E-value=8.9e-06 Score=70.51 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=44.6
Q ss_pred eEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215 84 IVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSY 158 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~ 158 (172)
..||+++.|+.++.|.|-+ .++.||++|.||.+|+|.+. +.+|+++.||++++|. +++.|+++
T Consensus 151 a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G---------v~IGdgavIgag~vV~---~gt~I~~~ 218 (272)
T PRK11830 151 AQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG---------VIVEEGSVLGMGVFLG---QSTKIYDR 218 (272)
T ss_pred CEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC---------CEECCCCEEcCCCEEc---CCeEECcC
Confidence 3444444444444444321 16889999999999888876 4568899999999888 78888864
Q ss_pred c
Q psy2215 159 I 159 (172)
Q Consensus 159 v 159 (172)
+
T Consensus 219 ~ 219 (272)
T PRK11830 219 E 219 (272)
T ss_pred C
Confidence 3
No 132
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.19 E-value=9.4e-06 Score=64.81 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=28.0
Q ss_pred eEECCCCeeCCCCEEccCCccCCCc--eEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKG--FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g--~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
+.||.+|.|++++.|... +.++ -++.+|++|+||++|+| ++.||+++.+|+
T Consensus 48 a~Ighd~~IG~~~~I~~~---l~G~~~~pV~IG~~~~IG~ga~I-----gv~IG~~~vIGa 100 (147)
T cd04649 48 VIVGKGSDVGGGASIMGT---LSGGGNNVISIGKRCLLGANSGI-----GISLGDNCIVEA 100 (147)
T ss_pred EEECCCCEECCCCEEEEE---CCCCcccCEEECCCCEECCCCEE-----eEEECCCCEECC
Confidence 455555555555555511 1111 12455788888888776 366666666544
No 133
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.19 E-value=8.1e-06 Score=78.39 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=48.3
Q ss_pred cCCeeecCCeEec-----ccceEECCCeEECCCcEEcCC--------CcceEECCCCeeCCCCEEccCCccCCCceEEee
Q psy2215 68 SGNKVSRKSLVAG-----AQNIVLTGKVIIQCDAVLRGD--------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP 134 (172)
Q Consensus 68 ~gn~Is~~a~I~G-----~~nI~Igg~v~I~~~avIrGd--------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p 134 (172)
-|.+|.+++.|.. ...++||+++.|+++|.|.+. ..+|+||++|.||.+|+|.++ +.+
T Consensus 111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g---------~~I 181 (695)
T TIGR02353 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDID---------TSI 181 (695)
T ss_pred cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCC---------CEE
Confidence 4455555554433 345667777777777776542 125677777777777777666 445
Q ss_pred CCCeEECCCcEEEecCCCeEECCCce
Q psy2215 135 GSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 135 Gd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
||++.||+++.+. .+..|.++..
T Consensus 182 gd~a~vgagS~V~---~g~~v~~~~~ 204 (695)
T TIGR02353 182 GDGAQLGHGSALQ---GGQSIPDGER 204 (695)
T ss_pred CCCCEECCCCEec---CCcccCCCCE
Confidence 7777777777666 4344444444
No 134
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.18 E-value=1.1e-05 Score=71.65 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=55.7
Q ss_pred cccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-------------ceEECCCCeeCCCCEEccCCccCCCc-
Q psy2215 64 GAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-------------NIRTGRYCIISKGVVIRPPFKKFAKG- 129 (172)
Q Consensus 64 ~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-------------~V~IG~~c~Ig~navI~p~~~~~~~g- 129 (172)
+....|.+|...+.|.. +..||++++|+++++|.-+.. .+.||.+|.||.+|.|+.. ++++
T Consensus 173 yVvp~gVrI~~sa~Vr~--gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~t---LsGg~ 247 (341)
T TIGR03536 173 YVVPKGVRIADTARVRL--GAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGT---LSGGG 247 (341)
T ss_pred eEccCCcEEcCCCeEcC--CcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEE---EeCCC
Confidence 34456666766666643 466777777777666653211 4567777777777777432 2222
Q ss_pred -eEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215 130 -FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC 163 (172)
Q Consensus 130 -~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga 163 (172)
..+.+|++|+||.||.| +..||+++++|+
T Consensus 248 ~~~V~IGe~~lIGagA~I-----GI~IGd~~iIGA 277 (341)
T TIGR03536 248 NIVISVGEGCLLGANAGI-----GIPLGDRCTVEA 277 (341)
T ss_pred ceeEEECCCcEECCCCEE-----eeEECCCCEECC
Confidence 22566899999999987 566666666444
No 135
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.18 E-value=6e-06 Score=68.18 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=30.0
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
|++.+.|.+ ..||.++.|+++|+|+ + +.||++|.|++++.|.. ..+|++|.|++++.|.
T Consensus 11 I~~~a~i~~---~~IG~~~~Ig~~a~I~-~---s~IG~~s~I~~~~~i~~----------~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 11 LHPTAELTE---SKLGRYTEIGERTRLR-E---VALGDYSYVMRDCDIIY----------TTIGKFCSIAAMVRIN 69 (204)
T ss_pred ECCCcEEec---cEeCCCcEECCCcEEe-C---CEECCCCEECCCcEEee----------eEECCCCEECCCCEEC
Confidence 444455532 3555555555555554 2 55555555555555542 2235555555555544
No 136
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.16 E-value=2.2e-05 Score=56.88 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=39.1
Q ss_pred ceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
++.|++++.|+++++|..+. .++.||++|.|++++.+.+. ..+||+++|+++++|.
T Consensus 28 ~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 28 TAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN---------ITIGDNVKIGANAVVT 88 (101)
T ss_pred CCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc---------CEECCCCEECCCCEEC
Confidence 45666666666666665442 25678888888888888765 3468888898888888
No 137
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.16 E-value=1.2e-05 Score=69.74 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=40.0
Q ss_pred ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+|.||.++.|+++|.|..++ ...+||++|.||.||+|.++ +.+|+++.||++++|.
T Consensus 161 givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg---------v~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 161 GIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN---------IEVGRGAKIGAGSVVL 227 (273)
T ss_pred CeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC---------CEECCCCEECCCCEEC
Confidence 45555555555555554321 13578888888888888877 5679999999999998
No 138
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.16 E-value=1.1e-05 Score=69.17 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=36.4
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCc--cCCCce-EEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFK--KFAKGF-LVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~--~~~~g~-~~~pGd~V~IG~navI~ 147 (172)
++.|++++.|.+.++|.|. .+||+++.|-+.+.|+.... ++++.- .+.+||+++|-+.++|+
T Consensus 33 ~V~ig~~t~l~shvvv~G~---T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~ 97 (260)
T COG1043 33 NVEIGDGTVLKSHVVVEGH---TTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIH 97 (260)
T ss_pred CcEECCCcEEcccEEEeCC---eEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEe
Confidence 5667777777777777766 66777777777677764443 223331 12335555555555554
No 139
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.15 E-value=2.6e-05 Score=69.06 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=41.5
Q ss_pred ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH 166 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~ 166 (172)
...||++|.||+++++..... ..+..+.+||+|+||.||.|. ++++||+++.+++...
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~--~~~~~~~ig~~~~ig~~~~i~---~~~~ig~~~~i~~g~~ 399 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDG--KKKHKTIIGKNVFIGSDTQLV---APVNIEDNVLIAAGST 399 (430)
T ss_pred CCEECCCCEECCCceEccccC--ccCcCCEECCCeEEcCCCEEe---CCcEECCCCEECCCCE
Confidence 466777777777766653211 112235679999999999999 9999999999776544
No 140
>KOG1462|consensus
Probab=98.14 E-value=3.9e-06 Score=76.11 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=57.0
Q ss_pred eEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeE
Q psy2215 77 LVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQ 154 (172)
Q Consensus 77 ~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~ 154 (172)
.+.|. ...+++++.|++++.|. .-.||.+|.||++++|-.+ .+-++|+||+++.|+ |+-++|+
T Consensus 329 ~l~g~-d~iv~~~t~i~~~s~ik----~SviG~nC~Ig~~~~v~nS----------ilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 329 ALVGA-DSIVGDNTQIGENSNIK----RSVIGSNCDIGERVKVANS----------ILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred eccch-hhccCCCceecccceee----eeeecCCccccCCcEEEee----------EeecCcEecCCcceecceecccce
Confidence 55553 34557777777666665 2679999999999998875 236788888888888 6668888
Q ss_pred ECCCce-eCCeEEec
Q psy2215 155 IYSYII-APCPLHVH 168 (172)
Q Consensus 155 IGs~v~-iga~i~~~ 168 (172)
||+++. .+|.|+++
T Consensus 394 Ig~gs~L~nC~Ig~~ 408 (433)
T KOG1462|consen 394 IGSGSKLKNCIIGPG 408 (433)
T ss_pred ecCCCeeeeeEecCC
Confidence 888877 77888776
No 141
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.10 E-value=1.9e-05 Score=61.98 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=49.0
Q ss_pred eEecccceEECCCeEECCCcEEcCC-------------------------------CcceEECCCCeeCCCCEEccCCcc
Q psy2215 77 LVAGAQNIVLTGKVIIQCDAVLRGD-------------------------------LANIRTGRYCIISKGVVIRPPFKK 125 (172)
Q Consensus 77 ~I~G~~nI~Igg~v~I~~~avIrGd-------------------------------l~~V~IG~~c~Ig~navI~p~~~~ 125 (172)
.+.+...+.||.+|.|++++.|... ..++.||++|.||.+|+|.++
T Consensus 15 ~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~g--- 91 (145)
T cd03349 15 CDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPG--- 91 (145)
T ss_pred ceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEECCCCEEeCC---
Confidence 3444457899999999999888533 126889999999999999887
Q ss_pred CCCceEEeeCCCeEECCCcEEE
Q psy2215 126 FAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 126 ~~~g~~~~pGd~V~IG~navI~ 147 (172)
+.+|+++.||++|+|.
T Consensus 92 ------v~Ig~~~vIgags~V~ 107 (145)
T cd03349 92 ------VTIGDGAVIAAGAVVT 107 (145)
T ss_pred ------CEECCCCEECCCCEEc
Confidence 4569999999999988
No 142
>PLN02739 serine acetyltransferase
Probab=98.06 E-value=2.5e-05 Score=70.09 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=39.5
Q ss_pred ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
++.||++++|+.+|.|...+ ...+||++|.||.|++|..+ +.+|+++.||+|++|.
T Consensus 225 GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~---------V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 225 GVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN---------ISIGAGAMVAAGSLVL 291 (355)
T ss_pred ceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC---------eEECCCCEECCCCEEC
Confidence 45566565555555554221 13678888888888888776 6679999999999998
No 143
>PLN02357 serine acetyltransferase
Probab=98.06 E-value=3e-05 Score=69.69 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=39.5
Q ss_pred ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
++.||++++|+++|.|...+ ...+||++|.||.|+.|..+ +.+||++.||++++|.
T Consensus 246 giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Ilgg---------V~IGdga~IGAgSVV~ 312 (360)
T PLN02357 246 GVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGN---------ITIGEGAKIGAGSVVL 312 (360)
T ss_pred ceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECC---------eEECCCCEECCCCEEC
Confidence 45666666666665554331 13677777777777777766 6679999999999998
No 144
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.06 E-value=6.4e-06 Score=50.24 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=16.3
Q ss_pred ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
|++||++|.||++|.| + +.+||+|.|++|++|.
T Consensus 1 pv~IG~~~~ig~~~~i--g---------i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--G---------ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp TEEE-TTEEE-TT-EE--T---------SEE-TTEEE-TTEEEE
T ss_pred CeEECCCEEECccccc--C---------CEEcCCCEECCCCEEc
Confidence 4566666666666665 2 3346666666666654
No 145
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.05 E-value=4e-05 Score=60.83 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=38.4
Q ss_pred eEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 84 IVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
..||+++.|.+++.|.+.. ....||++|.|+++++|..+ +.+||+|+||++++|.
T Consensus 88 ~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~---------v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 88 AVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN---------IEVGENAKIGANSVVL 147 (162)
T ss_pred CEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECC---------cEECCCCEECCCCEEC
Confidence 4455555555555554321 13578888888888888876 5579999999999988
No 146
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.3e-05 Score=71.22 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=44.3
Q ss_pred cEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 96 AVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 96 avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
+.|.|+ +.||++|.|++++.|++. +.+|++|.||+++.|. |+|.++.|+++++
T Consensus 256 ~~i~gp---~~ig~~~~i~~~~~i~~~---------~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~ 310 (358)
T COG1208 256 AYIIGP---VVIGPGAKIGPGALIGPY---------TVIGEGVTIGNGVEIKNSIIMDNVVIGHGSY 310 (358)
T ss_pred ceEeCC---EEECCCCEECCCCEECCC---------cEECCCCEECCCcEEEeeEEEcCCEECCCCE
Confidence 566665 889999999999998887 5568899999998888 8888888888877
No 147
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.04 E-value=2e-05 Score=75.69 Aligned_cols=75 Identities=17% Similarity=0.072 Sum_probs=47.7
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce----EEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF----LVYPGSTVYLVFTASVRLKSPFAQIYSY 158 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~----~~~pGd~V~IG~navI~i~~pga~IGs~ 158 (172)
+..||+++.|+....+..| .+.||++|.|+++|+|.+. .+.++. .+.+||+|+||++|+|. |+++||++
T Consensus 597 Ga~IG~~v~i~~~~~~~~d--lv~IGd~~~I~~~~~i~~h--~~~~~~~~~~~v~IG~~~~IG~~a~V~---~g~~IGd~ 669 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERD--LVTIGDDSTLNEGSVIQTH--LFEDRVMKSDTVTIGDGATLGPGAIVL---YGVVMGEG 669 (695)
T ss_pred CCEECCCeEECCeeccCCC--CeEECCCCEECCCCEEEec--cccccccccCCeEECCCCEECCCCEEC---CCCEECCC
Confidence 3566666666665555544 4678888888888877652 222221 14557777777777777 77777777
Q ss_pred ceeCCe
Q psy2215 159 IIAPCP 164 (172)
Q Consensus 159 v~iga~ 164 (172)
+.+|+.
T Consensus 670 a~Ig~~ 675 (695)
T TIGR02353 670 SVLGPD 675 (695)
T ss_pred CEECCC
Confidence 775543
No 148
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=9.3e-06 Score=74.47 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=47.9
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcC-----CC--------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRG-----DL--------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV 138 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrG-----dl--------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V 138 (172)
|.+...|.| ++.||+++.|+++++|+. +. ....||++|.|||-+.+||.. .++++|
T Consensus 277 I~p~v~l~G--~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~---------~L~~~~ 345 (460)
T COG1207 277 IEPNVILEG--NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA---------VLGADV 345 (460)
T ss_pred EecCcEEee--eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC---------cccCCC
Confidence 445667777 678888888888866661 11 134566666666666666663 347778
Q ss_pred EECCCcEEEecCCCeEECCCce
Q psy2215 139 YLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 139 ~IG~navI~i~~pga~IGs~v~ 160 (172)
.||..+.+. .++||.++.
T Consensus 346 hIGNFVEvK----~a~ig~gsK 363 (460)
T COG1207 346 HIGNFVEVK----KATIGKGSK 363 (460)
T ss_pred eEeeeEEEe----cccccCCcc
Confidence 888777777 666665544
No 149
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.04 E-value=4e-05 Score=68.51 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred eeecCCeEecccceEECCCeEECCCcEEcCCC------------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215 71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV 138 (172)
Q Consensus 71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V 138 (172)
.+.+.+.|.+ ++.||.++.|++++.|.+.. ....||++|.|+++|.|++. ..+|++|
T Consensus 273 ~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~ 341 (458)
T PRK14354 273 VIEPGVVIKG--NTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEV 341 (458)
T ss_pred EEeCCeEEec--ceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCC---------CEEeCCc
Confidence 3334444443 45666666666666664210 02345555555555555543 2346666
Q ss_pred EECCCcEEE
Q psy2215 139 YLVFTASVR 147 (172)
Q Consensus 139 ~IG~navI~ 147 (172)
.||+++.|.
T Consensus 342 ~i~~~~~i~ 350 (458)
T PRK14354 342 KIGNFVEIK 350 (458)
T ss_pred EECCceEEe
Confidence 666666664
No 150
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.03 E-value=4.1e-05 Score=67.71 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=48.8
Q ss_pred ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-------------ceEECCCCeeCCCCEEccCCccCCCc--eE
Q psy2215 67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-------------NIRTGRYCIISKGVVIRPPFKKFAKG--FL 131 (172)
Q Consensus 67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-------------~V~IG~~c~Ig~navI~p~~~~~~~g--~~ 131 (172)
++|-+|...+.+.= .-.|+++++|++++.|.-+.. .+.||++|.|++++.|... ++++ .+
T Consensus 151 p~gVRI~~~~rVRl--GAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~---LsGg~~~p 225 (319)
T TIGR03535 151 PTGVRIGDADRVRL--GAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGT---LSGGGKEV 225 (319)
T ss_pred CCccEECCCceeee--ccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceecce---ecCCCccc
Confidence 45555544443311 124555555555555543321 3445555555555554331 1112 34
Q ss_pred EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
+.+|++|+||+||.| +..||+++++|+..
T Consensus 226 V~IGe~~~IGagA~I-----GI~IGd~~VVGAGa 254 (319)
T TIGR03535 226 ISIGERCLLGANSGL-----GISLGDDCVVEAGL 254 (319)
T ss_pred EEECCCcEECCCCEE-----CeEECCCCEECCCC
Confidence 677999999999997 67888888866543
No 151
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.02 E-value=2.4e-05 Score=64.98 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=50.9
Q ss_pred ccCCeeecCCeE-------ecccceEECCCeEECCCcEEcCCCc-----------ceEECCCCeeCCCCEEccCCccCCC
Q psy2215 67 ASGNKVSRKSLV-------AGAQNIVLTGKVIIQCDAVLRGDLA-----------NIRTGRYCIISKGVVIRPPFKKFAK 128 (172)
Q Consensus 67 ~~gn~Is~~a~I-------~G~~nI~Igg~v~I~~~avIrGdl~-----------~V~IG~~c~Ig~navI~p~~~~~~~ 128 (172)
..|-.|++.+.| +| ..|.||+.+.|+++|.|...+. .-+||++++||.+|.|-.+
T Consensus 65 ~~gieIhp~A~IG~g~fIdHg-~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~------ 137 (194)
T COG1045 65 LFGIEIHPGAKIGRGLFIDHG-TGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN------ 137 (194)
T ss_pred hcceeeCCCCeECCceEEcCC-ceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc------
Confidence 355556666655 22 3577777777777777763311 3578888888888888776
Q ss_pred ceEEeeCCCeEECCCcEEE
Q psy2215 129 GFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 129 g~~~~pGd~V~IG~navI~ 147 (172)
+.+|||+.||+||+|.
T Consensus 138 ---I~IGd~akIGA~sVVl 153 (194)
T COG1045 138 ---IEIGDNAKIGAGSVVL 153 (194)
T ss_pred ---eEECCCCEECCCceEc
Confidence 6789999999999999
No 152
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.02 E-value=3.2e-05 Score=68.38 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=50.2
Q ss_pred cceEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEE
Q psy2215 82 QNIVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQI 155 (172)
Q Consensus 82 ~nI~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~I 155 (172)
+.+.||+.+.|++++.|.|.+. +|+||++|.||.||.| . +.+||++.||++++|. ++++|
T Consensus 198 HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--G---------I~IGd~~VVGAGaVVt---kgT~v 262 (319)
T TIGR03535 198 AGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--G---------ISLGDDCVVEAGLYVT---AGTKV 262 (319)
T ss_pred cCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--C---------eEECCCCEECCCCEEe---CCeEE
Confidence 5678999999999999776433 6999999999999999 3 5679999999999999 55544
No 153
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.02 E-value=2e-05 Score=70.34 Aligned_cols=31 Identities=6% Similarity=-0.027 Sum_probs=26.0
Q ss_pred EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
+.+||+|+||.+++|. |+++||+++.+++..
T Consensus 384 ~~Igd~~~ig~~~~i~---~gv~Ig~~~~i~ag~ 414 (448)
T PRK14357 384 TFIEDGAFIGSNSSLV---APVRIGKGALIGAGS 414 (448)
T ss_pred cEECCCCEECCCCEEe---CCcEECCCCEEcCCC
Confidence 4569999999999998 999999999966553
No 154
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.98 E-value=3.7e-05 Score=69.86 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=22.9
Q ss_pred cCCeeecCCeEecccceEECCCeEECCCcEEcC
Q psy2215 68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRG 100 (172)
Q Consensus 68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrG 100 (172)
.+.+|...+.|.| ++.||.++.|+++|+|++
T Consensus 276 ~~~~I~~~~~i~~--~v~Ig~~~~I~~~~~i~~ 306 (482)
T PRK14352 276 RDVVIHPGTQLLG--RTTIGEDAVVGPDTTLTD 306 (482)
T ss_pred CCcEEeCCcEEee--cCEECCCCEECCCCEEec
Confidence 4555666677766 578888888888888863
No 155
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.96 E-value=3.1e-05 Score=56.99 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=27.8
Q ss_pred EECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 91 IIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 91 ~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
.|++++.|. + ..||++|.|+ ++.|... .+++++.||++|.|. ++++++.||+++.
T Consensus 3 ~i~~~~~i~-~---s~Ig~~~~I~-~~~I~~s----------vi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~ 59 (104)
T cd04651 3 YIGRRGEVK-N---SLVSEGCIIS-GGTVENS----------VLFRGVRVGSGSVVEDSVIMPNVGIGRNAV 59 (104)
T ss_pred eecCCCEEE-e---EEECCCCEEc-CeEEEeC----------EEeCCCEECCCCEEEEeEEcCCCEECCCCE
Confidence 344445443 2 4455555555 5555432 235556666666665 5555555554444
No 156
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.96 E-value=4.7e-05 Score=60.24 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=54.7
Q ss_pred cCCeEecccceEECCCeEECCCcEEcCC----------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCC
Q psy2215 74 RKSLVAGAQNIVLTGKVIIQCDAVLRGD----------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGST 137 (172)
Q Consensus 74 ~~a~I~G~~nI~Igg~v~I~~~avIrGd----------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~ 137 (172)
..+.+.-..+++||.++.+.+++.|... ..++.||++|.||.|++|.|. +.+||+
T Consensus 78 ~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG---------V~IG~g 148 (190)
T COG0110 78 VNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG---------VTIGEG 148 (190)
T ss_pred CCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC---------EEECCC
Confidence 4555555678999999999999999841 115999999999999999998 667999
Q ss_pred eEECCCcEEE
Q psy2215 138 VYLVFTASVR 147 (172)
Q Consensus 138 V~IG~navI~ 147 (172)
+.||+++++.
T Consensus 149 avigagsVVt 158 (190)
T COG0110 149 AVIGAGSVVT 158 (190)
T ss_pred cEEeeCCEEe
Confidence 9999999999
No 157
>KOG1460|consensus
Probab=97.95 E-value=6.5e-06 Score=73.11 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=62.5
Q ss_pred eeeccceecccCCchhhhhhccccccCCeeecCCeEe---cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVA---GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI 119 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~---G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI 119 (172)
.+...++|-...++-.-|.++++.++--+-.-...+. |++ -+|-++++|+|+|++... .+||+|+.||+|++|
T Consensus 240 ~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~-a~IigdVyIhPsakvhpt---AkiGPNVSIga~vrv 315 (407)
T KOG1460|consen 240 AYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ-AEIIGDVYIHPSAKVHPT---AKIGPNVSIGANVRV 315 (407)
T ss_pred EEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC-ceEEeeeEEcCcceeCCc---cccCCCceecCCcee
Confidence 4556677777777777677666665422211112222 222 344456777777776654 555555555555555
Q ss_pred ccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215 120 RPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP 162 (172)
Q Consensus 120 ~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig 162 (172)
+++.+.-+ ..+-|++.|.+|+++. .+.||-++.+|
T Consensus 316 g~GvRl~~----sIIl~d~ei~enavVl----~sIigw~s~iG 350 (407)
T KOG1460|consen 316 GPGVRLRE----SIILDDAEIEENAVVL----HSIIGWKSSIG 350 (407)
T ss_pred cCCceeee----eeeccCcEeeccceEE----eeeeccccccc
Confidence 55543200 1247889999999998 66666655544
No 158
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.92 E-value=5.5e-05 Score=60.41 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=6.6
Q ss_pred EECCCeEECCCcEEcC
Q psy2215 85 VLTGKVIIQCDAVLRG 100 (172)
Q Consensus 85 ~Igg~v~I~~~avIrG 100 (172)
.||.+++|.+++++.-
T Consensus 15 ~IG~GtvI~~gavV~~ 30 (147)
T cd04649 15 YLAEGTTVMHEGFVNF 30 (147)
T ss_pred EECCCcEECCCCEEcc
Confidence 3344444444444443
No 159
>PLN02694 serine O-acetyltransferase
Probab=97.91 E-value=7.5e-05 Score=65.56 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=47.3
Q ss_pred CeeecCCeEecccceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215 70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV 138 (172)
Q Consensus 70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V 138 (172)
.+|.+...|-..-++.||+++.|+++|.|...+ ....||++|.||.||+|.++ +.+|+++
T Consensus 167 A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilgg---------i~IGd~a 237 (294)
T PLN02694 167 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGN---------VKIGEGA 237 (294)
T ss_pred ceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCC---------CEECCCC
Confidence 334444444333357777777777777775331 14677888888888777766 5579999
Q ss_pred EECCCcEEE
Q psy2215 139 YLVFTASVR 147 (172)
Q Consensus 139 ~IG~navI~ 147 (172)
.||++++|.
T Consensus 238 ~IGAgSVV~ 246 (294)
T PLN02694 238 KIGAGSVVL 246 (294)
T ss_pred EECCCCEEC
Confidence 999999998
No 160
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=97.91 E-value=4e-05 Score=65.86 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=38.7
Q ss_pred CCeeecCCeEecccceEECCCeEECCCcEEcCCCc---------ceEECCCCeeCCCCEEccCCc
Q psy2215 69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA---------NIRTGRYCIISKGVVIRPPFK 124 (172)
Q Consensus 69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~---------~V~IG~~c~Ig~navI~p~~~ 124 (172)
+-.+-..+.+.| ..+||.++.|.+.|.|.++-. .+.||++|.|-|.++|+..+.
T Consensus 39 ~t~l~shvvv~G--~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~ 101 (260)
T COG1043 39 GTVLKSHVVVEG--HTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTV 101 (260)
T ss_pred CcEEcccEEEeC--CeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEecccc
Confidence 333334455566 467777777777777765422 799999999999999998864
No 161
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.89 E-value=1.6e-05 Score=47.71 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=15.2
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI 119 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI 119 (172)
.|++++.|++++.|.++ +.||++|.|+++++|
T Consensus 3 ~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETT---EEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCC---CEECCCCEEcCCCEE
Confidence 44445555555555444 445555544444444
No 162
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.82 E-value=9.7e-05 Score=65.82 Aligned_cols=78 Identities=15% Similarity=-0.067 Sum_probs=59.3
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceE-------EeeCCCeEECCCcEEE-ecCCC----
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFL-------VYPGSTVYLVFTASVR-LKSPF---- 152 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~-------~~pGd~V~IG~navI~-i~~pg---- 152 (172)
.+..+++|.+.++|+.. +.||++|.|.++++|..+......+.- ..+|++|.||.+|.|. .+.++
T Consensus 174 Vvp~gVrI~~sa~Vr~g---A~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~ 250 (341)
T TIGR03536 174 VVPKGVRIADTARVRLG---AYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIV 250 (341)
T ss_pred EccCCcEEcCCCeEcCC---cEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCcee
Confidence 66778888888888876 888999999888888876552222211 2459999999999998 77788
Q ss_pred eEECCCceeCCeE
Q psy2215 153 AQIYSYIIAPCPL 165 (172)
Q Consensus 153 a~IGs~v~iga~i 165 (172)
+.||++|.+|+..
T Consensus 251 V~IGe~~lIGagA 263 (341)
T TIGR03536 251 ISVGEGCLLGANA 263 (341)
T ss_pred EEECCCcEECCCC
Confidence 8999999965543
No 163
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.82 E-value=2.8e-05 Score=47.36 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=25.6
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP 121 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p 121 (172)
++.||+++.|++++.| | ++||++|.|++|++|.+
T Consensus 1 pv~IG~~~~ig~~~~i-g----i~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI-G----ITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE-T----SEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc-C----CEEcCCCEECCCCEEcC
Confidence 5789999999999998 3 99999999999999863
No 164
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.79 E-value=3e-05 Score=46.48 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=25.3
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+.||++|.|+++++|.++ ..+|+++.|+++|+|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETT---------EEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEEC
Confidence 678888888888888886 4557777777777665
No 165
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.78 E-value=4.7e-05 Score=66.04 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=41.1
Q ss_pred ceEECCCeEECCCcEEcCC------Cc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCC
Q psy2215 83 NIVLTGKVIIQCDAVLRGD------LA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSP 151 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGd------l~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~p 151 (172)
++++|+.++|++|+-|.|. +. |+.||++|.||.|+++... +..||+|.|+++..|. .
T Consensus 150 ~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veG---------V~vGdg~VV~aGv~I~---~ 217 (271)
T COG2171 150 RASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEG---------VIVGDGCVVAAGVFIT---Q 217 (271)
T ss_pred eeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEee---------eEeCCCcEEecceEEe---C
Confidence 3455555555555444433 22 9999999999999988776 4457777777777666 5
Q ss_pred CeEECC
Q psy2215 152 FAQIYS 157 (172)
Q Consensus 152 ga~IGs 157 (172)
++.|..
T Consensus 218 ~tki~~ 223 (271)
T COG2171 218 DTKIYD 223 (271)
T ss_pred CcceEE
Confidence 555544
No 166
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.76 E-value=0.00013 Score=63.93 Aligned_cols=60 Identities=17% Similarity=0.030 Sum_probs=33.6
Q ss_pred EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCC----eEECCCce
Q psy2215 85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPF----AQIYSYII 160 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pg----a~IGs~v~ 160 (172)
.|+.++.|+++|+|+ +..|+++|.|+++|+|.. ..+|+++.||+++.+. ++ ..||+++.
T Consensus 310 ~ig~~~~I~~~~~i~----~svi~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~---~~~~~~~~ig~~~~ 372 (380)
T PRK05293 310 VLFQGVQVGEGSVVK----DSVIMPGAKIGENVVIER----------AIIGENAVIGDGVIIG---GGKEVITVIGENEV 372 (380)
T ss_pred EEcCCCEECCCCEEE----CCEEeCCCEECCCeEEeE----------EEECCCCEECCCCEEc---CCCceeEEEeCCCC
Confidence 344444444444443 244555555555555543 2347777777777777 32 56777766
Q ss_pred e
Q psy2215 161 A 161 (172)
Q Consensus 161 i 161 (172)
+
T Consensus 373 ~ 373 (380)
T PRK05293 373 I 373 (380)
T ss_pred C
Confidence 3
No 167
>KOG4750|consensus
Probab=97.57 E-value=0.00014 Score=62.33 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=43.8
Q ss_pred ceEECCCCeeCCCCEEccCCccC--CC--ceEE-eeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKF--AK--GFLV-YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL 165 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~--~~--g~~~-~pGd~V~IG~navI~i~~pga~IGs~v~iga~i 165 (172)
.|.||+-.+||+|+.|..+...- -+ |... .+||+|+||.++.|. |+++||+++.++|..
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtIL---gnV~IGegavIaAGs 231 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTIL---GNVTIGEGAVIAAGS 231 (269)
T ss_pred ceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEe---CCeeECCCcEEeccc
Confidence 68888888888888887654311 11 1111 459999999999999 999999999976643
No 168
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.52 E-value=0.00033 Score=60.84 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=26.8
Q ss_pred eeCCCeEECCCcEEE--ecCCCeEECCCce-eCCeEEe
Q psy2215 133 YPGSTVYLVFTASVR--LKSPFAQIYSYII-APCPLHV 167 (172)
Q Consensus 133 ~pGd~V~IG~navI~--i~~pga~IGs~v~-iga~i~~ 167 (172)
.+|++|.||++|+|. ++|+++.||+++. .+|.+++
T Consensus 312 ~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~ 349 (361)
T TIGR02091 312 VLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDK 349 (361)
T ss_pred EECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECC
Confidence 458899999999998 8888888888877 3444443
No 169
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=97.44 E-value=0.00084 Score=58.36 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=35.6
Q ss_pred eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc-EEE
Q psy2215 72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA-SVR 147 (172)
Q Consensus 72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na-vI~ 147 (172)
+.+.+.|. +..|.+.+.|+++|.|. + ..|+++|.|+++|+|+. ... . ...+++++.|++++ .+.
T Consensus 257 i~~~~~i~---~~~i~~~~~Ig~~~~I~-~---~~i~~~~~Ig~~~~i~~-~~i-~---~s~i~~~~~i~~~~~~~~ 321 (353)
T TIGR01208 257 VGEGAKIV---NSVIRGPAVIGEDCIIE-N---SYIGPYTSIGEGVVIRD-AEV-E---HSIVLDESVIEGVQARIV 321 (353)
T ss_pred ECCCCEEe---CCEEECCcEECCCCEEc-C---cEECCCCEECCCCEEee-eEE-E---eeEEcCCCEEcCCcceee
Confidence 34445552 34556667777777775 2 46667777777777652 110 0 02346666666653 555
No 170
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.32 E-value=0.00051 Score=60.06 Aligned_cols=28 Identities=11% Similarity=-0.154 Sum_probs=24.3
Q ss_pred eeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 133 YPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 133 ~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
.++++|.||++|.|. |+++++.|++++.
T Consensus 306 ~i~~~~~I~~~~~i~~sii~~~~~I~~~~~ 335 (369)
T TIGR02092 306 ILSRGVHVGKDALIKNCIIMQRTVIGEGAH 335 (369)
T ss_pred EECCCCEECCCCEEEeeEEeCCCEECCCCE
Confidence 469999999999998 8888888888776
No 171
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.19 E-value=0.00069 Score=61.11 Aligned_cols=28 Identities=14% Similarity=-0.112 Sum_probs=24.7
Q ss_pred eeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 133 YPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 133 ~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
.+|++|.||++|.|. |+|++|.||+++.
T Consensus 345 vi~~~~~I~~~~~i~~svi~~~~~I~~~~~ 374 (425)
T PRK00725 345 VLFSRVRVNSFSNVEDSVLLPDVNVGRSCR 374 (425)
T ss_pred EECCCCEECCCCEEeeeEEcCCCEECCCCE
Confidence 358999999999999 8999999998887
No 172
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.16 E-value=0.00075 Score=60.32 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=35.2
Q ss_pred ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
++.||++|.|+ ++.|.. ..+|++|.||++|.|. |+|+++.||+++.
T Consensus 315 ~~~ig~~~~I~-~~~i~~----------svIg~~~~I~~~~~i~~sii~~~~~i~~~~~ 362 (407)
T PRK00844 315 DSLVSAGSIIS-GATVRN----------SVLSPNVVVESGAEVEDSVLMDGVRIGRGAV 362 (407)
T ss_pred eCEEcCCCEEC-CeeeEc----------CEECCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 35566666665 555553 3469999999999998 9999999999877
No 173
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.14 E-value=0.0027 Score=57.43 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=8.9
Q ss_pred eEECCCeEECCCcEEc
Q psy2215 84 IVLTGKVIIQCDAVLR 99 (172)
Q Consensus 84 I~Igg~v~I~~~avIr 99 (172)
-.|+.++.|+++|+|.
T Consensus 332 svI~~~~~Ig~~~~I~ 347 (436)
T PLN02241 332 SVVGLRSRIGEGVEIE 347 (436)
T ss_pred eEEcCCCEECCCCEEE
Confidence 3555555555555554
No 174
>KOG4750|consensus
Probab=97.02 E-value=0.0015 Score=56.17 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=39.7
Q ss_pred ceEECCCeEECCCc------EEcCC------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 83 NIVLTGKVIIQCDA------VLRGD------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 83 nI~Igg~v~I~~~a------vIrGd------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
.|.||+.++|+.++ .+.|. --| .||++|.||.++.|-++ +.+|++..||++++|.
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP-~Igd~vliGaGvtILgn---------V~IGegavIaAGsvV~ 234 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHP-KIGDNVLIGAGVTILGN---------VTIGEGAVIAAGSVVL 234 (269)
T ss_pred ceeecceeEeccceeeecceeeccccccccccCC-cccCCeEEccccEEeCC---------eeECCCcEEeccceEE
Confidence 35555555555544 44432 227 99999999999999998 5568888888888887
No 175
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.00019 Score=62.68 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=45.0
Q ss_pred eeeeccceecccCCchhhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215 42 VDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK 115 (172)
Q Consensus 42 ~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~ 115 (172)
+.-+.+|||+|+|+|.+|++++.+..+.. ...| ...+....++. +..|+|+ ..||..|.|+.
T Consensus 211 ~~~~~~G~WlDtGt~~slleA~~~i~~~~------~~~G--~~~~~~~~~~~-~~~i~~~---~~~~~~~~l~~ 272 (286)
T COG1209 211 VAILIRGWWLDTGTPESLLEANNFVRTVS------KRQG--FKIACPEEIAW-NGWIDGP---GLIGLASQLEK 272 (286)
T ss_pred EEEEccceEEecCChhhHHHHHHHHHHHH------hhcC--CEEeChhHEEE-ecEEech---Hhhccccchhh
Confidence 45678999999999999999999998732 2344 34455666666 7778876 66666666653
No 176
>KOG1460|consensus
Probab=96.93 E-value=0.0019 Score=57.75 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=23.8
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII 160 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~ 160 (172)
|.|-+.+.+.|.++|+|+ +.+|.+|.||+++-++ |+.++++|.+|+.
T Consensus 289 VyIhPsakvhptAkiGPN---------VSIga~vrvg~GvRl~~sIIl~d~ei~enav 337 (407)
T KOG1460|consen 289 VYIHPSAKVHPTAKIGPN---------VSIGANVRVGPGVRLRESIILDDAEIEENAV 337 (407)
T ss_pred eEEcCcceeCCccccCCC---------ceecCCceecCCceeeeeeeccCcEeeccce
Confidence 444444444444555544 3345555555555555 5555555555543
No 177
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.89 E-value=0.0052 Score=55.51 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.8
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECC------------------CCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGR------------------YCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA 144 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~------------------~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na 144 (172)
+-.|++++.|+++|+|... |..|+ +|.||++|+|... .++++|.||+++
T Consensus 324 ~svi~~~~~Ig~~~~i~~s---vi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~----------ii~~~~~i~~~~ 390 (429)
T PRK02862 324 HSVLGIRSRIESGCTIEDT---LVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRA----------IIDKNARIGNNV 390 (429)
T ss_pred EEEEeCCcEECCCCEEEee---EEecCcccccccccccccccCCcccEECCCCEEEEE----------EECCCcEECCCc
Confidence 4567777777777777653 44453 6777777777653 346777777777
Q ss_pred EEE
Q psy2215 145 SVR 147 (172)
Q Consensus 145 vI~ 147 (172)
.|.
T Consensus 391 ~~~ 393 (429)
T PRK02862 391 RIV 393 (429)
T ss_pred EEe
Confidence 775
No 178
>KOG1462|consensus
Probab=96.80 E-value=0.0044 Score=56.67 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=28.5
Q ss_pred EECCCeEECCCcEEcCCCc--ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215 85 VLTGKVIIQCDAVLRGDLA--NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII 160 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~--~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ 160 (172)
.||.+|.|++.++|.+.+- +|.||++|.| +||+| |+++.||++|.+. +|.||.+=+
T Consensus 353 viG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensII---------------g~gA~Ig~gs~L~----nC~Ig~~yv 410 (433)
T KOG1462|consen 353 VIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSII---------------GMGAQIGSGSKLK----NCIIGPGYV 410 (433)
T ss_pred eecCCccccCCcEEEeeEeecCcEecCCcce-eccee---------------cccceecCCCeee----eeEecCCcE
Confidence 4566666666666654321 3333333333 13333 3456666666666 555554433
No 179
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.011 Score=53.97 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=29.7
Q ss_pred eecCCeEecc-cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215 72 VSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP 121 (172)
Q Consensus 72 Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p 121 (172)
++..|.|.|. .|=.|+.++.|+++|+|.. ..|=++|.||+||+|+.
T Consensus 299 v~~GciI~G~V~nSVL~~~v~I~~gs~i~~----svim~~~~IG~~~~l~~ 345 (393)
T COG0448 299 VAGGCIISGTVENSVLFRGVRIGKGSVIEN----SVIMPDVEIGEGAVLRR 345 (393)
T ss_pred eeCCeEEEeEEEeeEEecCeEECCCCEEEe----eEEeCCcEECCCCEEEE
Confidence 3445566664 4556777788888887774 44555577777777764
No 180
>KOG4042|consensus
Probab=94.25 E-value=0.035 Score=45.32 Aligned_cols=55 Identities=18% Similarity=0.351 Sum_probs=37.3
Q ss_pred eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
|.|...+++-..+-|||| |+|+++|++.|-+++-... | ++++|+++.|.+.++|.
T Consensus 9 vkIap~AvVCvEs~irGd---vti~~gcVvHP~a~~iA~a-----G-PI~iGEnniiEEyA~i~ 63 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGD---VTIKEGCVVHPFAVFIATA-----G-PIYIGENNIIEEYAVIR 63 (190)
T ss_pred eeecCceEEEEecccccc---eEecCCcEecceEEEEccc-----C-CEEEccCchhhhHHHHH
Confidence 566667777777788888 8888888888877776542 1 14556666666655554
No 181
>KOG1322|consensus
Probab=93.66 E-value=0.084 Score=47.68 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=8.1
Q ss_pred eEECCCCeeCCCCEEccC
Q psy2215 105 IRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~ 122 (172)
+.||++|.||+|++|+|.
T Consensus 271 ~~iG~~C~Ig~~vvIG~r 288 (371)
T KOG1322|consen 271 ASIGENCSIGPNVVIGPR 288 (371)
T ss_pred cccCCccEECCCceECCC
Confidence 344444444444444443
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=86.46 E-value=2.3 Score=37.09 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=16.5
Q ss_pred EECCCeEECCCcEEcCCCc--ceEECCCCeeCCC
Q psy2215 85 VLTGKVIIQCDAVLRGDLA--NIRTGRYCIISKG 116 (172)
Q Consensus 85 ~Igg~v~I~~~avIrGdl~--~V~IG~~c~Ig~n 116 (172)
.++.++++++++.|.||+. .++|+-.|-+.-|
T Consensus 35 V~g~~iivge~v~i~Gdiva~diridmw~kv~gN 68 (277)
T COG4801 35 VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN 68 (277)
T ss_pred eeeeeEEeccCcEEeeeEEecceeeeeeeEeecc
Confidence 4456666666666666632 3444444443333
No 183
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=85.01 E-value=2.9 Score=36.42 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=22.3
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP 122 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~ 122 (172)
+|...+.++|++++.++-. .+|+..+.|+++.|...
T Consensus 16 ~ivv~gdViIG~nS~l~~~----V~g~~iivge~v~i~Gd 51 (277)
T COG4801 16 IIVVKGDVIIGKNSMLKYG----VVGEEIIVGERVRIYGD 51 (277)
T ss_pred eEEEeccEEEcccceeeee----eeeeeEEeccCcEEeee
Confidence 4555667777777777632 45666666666666644
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=64.05 E-value=11 Score=34.47 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=8.8
Q ss_pred CCCeEECCCcEEE
Q psy2215 135 GSTVYLVFTASVR 147 (172)
Q Consensus 135 Gd~V~IG~navI~ 147 (172)
+.++.||++|+|.
T Consensus 305 ~~~~~IG~~cIis 317 (414)
T PF07959_consen 305 GGPWSIGSNCIIS 317 (414)
T ss_pred CCCCEECCCCEEE
Confidence 4457777777777
No 185
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=62.43 E-value=4 Score=35.43 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=18.7
Q ss_pred eeeccceecccCCchhhhhhccc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGA 65 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~ 65 (172)
-+..+|.|.|+|+|++++.++..
T Consensus 253 ~~~~~g~w~DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 253 AMLMTGDSYDCGKKMGYMQAFVK 275 (297)
T ss_pred EEEeccEEECCCCHHHHHHHHHH
Confidence 34568999999999999998544
No 186
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=61.95 E-value=4.1 Score=35.34 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=21.7
Q ss_pred eeeeccc-eecccCCchhhhhhccccc
Q psy2215 42 VDFLSRG-WWFESKSSHKILVYSGAVA 67 (172)
Q Consensus 42 ~~~~~~g-~W~D~~~p~~Ll~~~~~~~ 67 (172)
+.++.+| .|+|+|+|++|++++.+..
T Consensus 215 ~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 215 VAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 3456778 4999999999999998775
No 187
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=61.30 E-value=4.1 Score=33.00 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=19.2
Q ss_pred eeccceecccCCchhhhhhcccc
Q psy2215 44 FLSRGWWFESKSSHKILVYSGAV 66 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~~~~~ 66 (172)
+..+|+|.|.++|+++++++.+.
T Consensus 210 ~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 210 YELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EeeCCEEEcCCCHHHHHHHHHHh
Confidence 44579999999999999987653
No 188
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=59.01 E-value=4.8 Score=34.68 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=20.0
Q ss_pred eeccce-ecccCCchhhhhhccccc
Q psy2215 44 FLSRGW-WFESKSSHKILVYSGAVA 67 (172)
Q Consensus 44 ~~~~g~-W~D~~~p~~Ll~~~~~~~ 67 (172)
.+.+|. |+|+|+|++|++++.+..
T Consensus 213 ~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 213 LLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EecCCCEEEeCCCHHHHHHHHHHHH
Confidence 344776 999999999999988775
No 189
>PRK10122 GalU regulator GalF; Provisional
Probab=58.88 E-value=5.1 Score=34.65 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=19.6
Q ss_pred eeeccceecccCCchhhhhhcccc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAV 66 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~ 66 (172)
-+..+|.|.|+|+|++++.++-..
T Consensus 253 ~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 253 AMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEeCCEEEcCCCHHHHHHHHHHH
Confidence 345689999999999998887654
No 190
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=58.01 E-value=5.3 Score=32.98 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=19.4
Q ss_pred eeeccceecccCCchhhhhhccc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGA 65 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~ 65 (172)
-+..+|+|.|+++|+++++++.+
T Consensus 234 ~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 234 VYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EecCCCeeecCCCHHHHHhHhhc
Confidence 34567999999999999998864
No 191
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=57.11 E-value=31 Score=24.67 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=15.6
Q ss_pred CCeEecccceEECCCeEECCCcEEcCC
Q psy2215 75 KSLVAGAQNIVLTGKVIIQCDAVLRGD 101 (172)
Q Consensus 75 ~a~I~G~~nI~Igg~v~I~~~avIrGd 101 (172)
...+.| +|...+.+.|.+++.++|+
T Consensus 24 ~G~v~G--~i~~~g~v~i~~~~~v~G~ 48 (101)
T PF04519_consen 24 DGRVEG--NIKAEGKVKIGGNGEVKGD 48 (101)
T ss_pred EEEEEE--EEEEceEEEEcCCCEEEEE
Confidence 334444 4666667777777777776
No 192
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=55.93 E-value=17 Score=33.24 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=21.8
Q ss_pred ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215 83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120 (172)
Q Consensus 83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~ 120 (172)
|-.|.+++.++++++|. . ..++.++.||+||+|-
T Consensus 284 nSil~~~~~vg~~svIe-~---s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIE-H---SHLGGPWSIGSNCIIS 317 (414)
T ss_pred EeEecCCceECCCCEEE-e---eecCCCCEECCCCEEE
Confidence 45677788888888876 2 4555555555555555
No 193
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=53.41 E-value=6.6 Score=31.75 Aligned_cols=20 Identities=0% Similarity=-0.180 Sum_probs=17.0
Q ss_pred eccceecccCCchhhhhhcc
Q psy2215 45 LSRGWWFESKSSHKILVYSG 64 (172)
Q Consensus 45 ~~~g~W~D~~~p~~Ll~~~~ 64 (172)
..++.|+|.++|+||+.+..
T Consensus 217 ~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 217 EVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred EeCCCCCCCCCHHHHHHHHH
Confidence 46788999999999988764
No 194
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=52.69 E-value=7.2 Score=31.55 Aligned_cols=22 Identities=0% Similarity=-0.198 Sum_probs=17.8
Q ss_pred eeeccceecccCCchhhhhhcc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSG 64 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~ 64 (172)
.+...++|+|+++|+||..+..
T Consensus 217 ~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 217 VVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred EEEeCCCCCCCCCHHHHHHHHh
Confidence 3446788999999999998764
No 195
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=52.54 E-value=5.2 Score=32.26 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=19.2
Q ss_pred eeeccc--eecccCCchhhhhhccccc
Q psy2215 43 DFLSRG--WWFESKSSHKILVYSGAVA 67 (172)
Q Consensus 43 ~~~~~g--~W~D~~~p~~Ll~~~~~~~ 67 (172)
-+...+ .|.|+|+|+++++++...+
T Consensus 220 ~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 220 AFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp EEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred EEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 446667 7999999999999986543
No 196
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=52.44 E-value=6.5 Score=31.96 Aligned_cols=22 Identities=0% Similarity=-0.138 Sum_probs=17.7
Q ss_pred eeccc-eecccCCchhhhhhccc
Q psy2215 44 FLSRG-WWFESKSSHKILVYSGA 65 (172)
Q Consensus 44 ~~~~g-~W~D~~~p~~Ll~~~~~ 65 (172)
+..+| .|+|+++|+||+.++..
T Consensus 221 ~~~~~~~w~~i~~~~dl~~a~~~ 243 (245)
T PRK05450 221 VVVEEAPSIGVDTPEDLERVRAL 243 (245)
T ss_pred EEeCCCCCCCcCCHHHHHHHHHH
Confidence 35664 89999999999988753
No 197
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=50.54 E-value=12 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=26.9
Q ss_pred cccceeeeecCCCCceee-eccceecccCCchhhhhhc
Q psy2215 27 NTNRRVWVQSQPSGAVDF-LSRGWWFESKSSHKILVYS 63 (172)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~~~g~W~D~~~p~~Ll~~~ 63 (172)
-.||.+|+-| |||...| ..+|.|.+...=..|.++.
T Consensus 54 ~p~~QIWlas-~sG~~hf~~~~~~W~~~r~g~~L~~~L 90 (105)
T PRK00446 54 EPLHELWLAA-KSGGFHFDYKDGEWICDRSGEEFWALL 90 (105)
T ss_pred CchhheeEec-CCCCccceecCCeEEECCCCcHHHHHH
Confidence 3689999999 6998766 4578999887666665544
No 198
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=47.75 E-value=9.5 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred ccceecccCCchhhhhhcccc
Q psy2215 46 SRGWWFESKSSHKILVYSGAV 66 (172)
Q Consensus 46 ~~g~W~D~~~p~~Ll~~~~~~ 66 (172)
..|.|.|+++|+++++++.+.
T Consensus 217 ~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 217 RGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCcEEEeCCCHHHHHHHHHHH
Confidence 349999999999999988653
No 199
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=47.67 E-value=9.5 Score=33.10 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=19.0
Q ss_pred eeeccceecccCCchhhhhhccc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGA 65 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~ 65 (172)
-+..+|.|.|+|+|++++.++..
T Consensus 256 ~~~~~G~w~DIGtpe~~~~a~~~ 278 (302)
T PRK13389 256 AYHMKGKSHDCGNKLGYMQAFVE 278 (302)
T ss_pred EEEeeeEEEeCCCHHHHHHHHHH
Confidence 44568999999999999988644
No 200
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=47.07 E-value=11 Score=29.93 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=17.9
Q ss_pred eeeeccceecccCCchhhhhhc
Q psy2215 42 VDFLSRGWWFESKSSHKILVYS 63 (172)
Q Consensus 42 ~~~~~~g~W~D~~~p~~Ll~~~ 63 (172)
.-+..+|.|.|.++|+||..++
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 3445678999999999998874
No 201
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=43.66 E-value=12 Score=30.90 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.5
Q ss_pred eeeccceecccCCchhhhhhcc
Q psy2215 43 DFLSRGWWFESKSSHKILVYSG 64 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~ 64 (172)
-+..+|.|.|.++|++++.++.
T Consensus 241 ~~~~~g~w~digt~~~y~~a~~ 262 (267)
T cd02541 241 AYVFEGKRYDCGNKLGYLKATV 262 (267)
T ss_pred EEEeeeEEEeCCCHHHHHHHHH
Confidence 4556799999999999998874
No 202
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=40.58 E-value=24 Score=26.44 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=28.2
Q ss_pred cccceeeeecCCCCceeeec-cceecccCCchhhhhhc
Q psy2215 27 NTNRRVWVQSQPSGAVDFLS-RGWWFESKSSHKILVYS 63 (172)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~g~W~D~~~p~~Ll~~~ 63 (172)
-.+|.+|+.|.-||...|=- +|.|.+...-.+|.++.
T Consensus 57 ~p~~QIWlsSpisG~~hf~~~~~~W~~~r~g~~l~~~L 94 (109)
T PF01491_consen 57 PPNRQIWLSSPISGPFHFDYDDGKWIDTRDGEELFELL 94 (109)
T ss_dssp CCCTEEEEEETTTEEEEEEEESSSEEETTTTEBHHHHH
T ss_pred CHHHHHHHhcccCCceEEEEcCCEEEECCCCchHHHHH
Confidence 46899999987799876544 58999888777766544
No 203
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=38.70 E-value=16 Score=29.96 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.5
Q ss_pred eeeccceecccCCchhhhhh
Q psy2215 43 DFLSRGWWFESKSSHKILVY 62 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~ 62 (172)
-+..+|+|.|.++|++++++
T Consensus 241 ~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 241 AYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred EEEcceEEEeCCCHHHHhhC
Confidence 35668999999999998764
No 204
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=37.58 E-value=20 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.608 Sum_probs=27.0
Q ss_pred cccceeeeecCCCCceee-eccceecccCCchhhhhhc
Q psy2215 27 NTNRRVWVQSQPSGAVDF-LSRGWWFESKSSHKILVYS 63 (172)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~~~g~W~D~~~p~~Ll~~~ 63 (172)
-.||.+|+-|+ ||...| ..++.|.|...=..|+++.
T Consensus 52 ~p~~QIWlasp-sG~~hF~~~~~~Wi~~r~g~~l~~~L 88 (102)
T TIGR03421 52 EPLHQIWLAAK-SGGFHFDYDGGAWIDTRDGEELWALL 88 (102)
T ss_pred chhhhheeecC-CCCccceecCCEEEECCCCcHHHHHH
Confidence 36899999998 988776 4578999877666665544
No 205
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=36.33 E-value=24 Score=22.29 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=13.2
Q ss_pred ccceeecccccceeeeecCCCC
Q psy2215 19 SGQRCLLANTNRRVWVQSQPSG 40 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (172)
.|..+|--...|.+|+|..|--
T Consensus 15 ~gM~sl~D~~gRTiWFqGdPGp 36 (39)
T PF09292_consen 15 PGMKSLRDRNGRTIWFQGDPGP 36 (39)
T ss_dssp TT-EEEE-TTS-EEEESS---T
T ss_pred cccccccccCCCEEEeeCCCCC
Confidence 3677788889999999998853
No 206
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=36.18 E-value=20 Score=28.62 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=15.8
Q ss_pred eeccceecccCCchhhhhh
Q psy2215 44 FLSRGWWFESKSSHKILVY 62 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~ 62 (172)
+...|.|.|.++|++++.+
T Consensus 203 ~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 203 LVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred EecCCEEEcCCCHHHHhhC
Confidence 4467999999999998764
No 207
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=35.35 E-value=16 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.534 Sum_probs=19.3
Q ss_pred eeccceecccCCchhhhhhccccc
Q psy2215 44 FLSRGWWFESKSSHKILVYSGAVA 67 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~~~~~~ 67 (172)
+..+|.|.|.++|+||..++...+
T Consensus 211 ~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 211 SIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EEcCceEEeCCCHHHHHHHHHHHH
Confidence 345789999999999998886543
No 208
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=31.68 E-value=27 Score=25.85 Aligned_cols=36 Identities=19% Similarity=0.490 Sum_probs=26.4
Q ss_pred ccceeeeecCCCCceee-eccceecccCCchhhhhhc
Q psy2215 28 TNRRVWVQSQPSGAVDF-LSRGWWFESKSSHKILVYS 63 (172)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~g~W~D~~~p~~Ll~~~ 63 (172)
.||.+|+-|.-||..-| ..++.|.+...=..|.++.
T Consensus 55 p~~QIWlsSp~sGp~hfd~~~~~Wi~~r~g~~L~~~L 91 (97)
T TIGR03422 55 PNKQIWLSSPVSGPKRYDYVNGEWIYLRDGSSLTELL 91 (97)
T ss_pred hhhHHheecCCCCCcceeecCCEEEECCCCChHHHHH
Confidence 58999999977886554 3578999977666665543
No 209
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=31.29 E-value=23 Score=29.48 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=22.5
Q ss_pred eeeccceecccCCchhhhhhccccccCC
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGN 70 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn 70 (172)
-+..+|.|.|.++|.++..+..+..++.
T Consensus 221 ~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 221 AYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred EEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 4556799999999999988887766653
No 210
>PF06521 PAR1: PAR1 protein; InterPro: IPR009489 This family consists of several plant specific PAR1 proteins from Nicotiana tabacum (Common tobacco) and Arabidopsis thaliana (Mouse-ear cress). The function of this family is unknown.
Probab=28.42 E-value=24 Score=28.60 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=15.8
Q ss_pred ecccceeeccccc---ceeeeecCCCC
Q psy2215 17 VSSGQRCLLANTN---RRVWVQSQPSG 40 (172)
Q Consensus 17 ~~~~~~~~~~~~~---~~~~~~~~~~~ 40 (172)
-|+|.||+|-++- ..+=.|-|-|.
T Consensus 17 sssG~RCvLEk~~~~~g~~~y~C~TSe 43 (158)
T PF06521_consen 17 SSSGKRCVLEKSVKRDGEEEYQCQTSE 43 (158)
T ss_pred ecCCcceEEeeccccCCceEEEecchH
Confidence 3789999999863 33444555544
No 211
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=27.96 E-value=91 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=24.2
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+..-.+-.+-++.+|--. +|..+.||+||-+|.+-+|.
T Consensus 23 vK~~~gq~V~~G~IivRQ-----RGtk~hPG~nVg~GrD~Tlf 60 (83)
T TIGR00062 23 VKRAGGQFVRAGSIIVRQ-----RGTKFHPGNNVGMGKDHTLF 60 (83)
T ss_pred eEecCCEEEcCCcEEEEc-----CCceECCCCcccccCCCeEE
Confidence 444444455555555433 34557778888888888888
No 212
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=27.85 E-value=33 Score=26.81 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=15.7
Q ss_pred eeccceecccCCchhhhhh
Q psy2215 44 FLSRGWWFESKSSHKILVY 62 (172)
Q Consensus 44 ~~~~g~W~D~~~p~~Ll~~ 62 (172)
+..+|.|+|+++|.||..+
T Consensus 204 ~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 204 FEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EecCCeEEecCCHHHHHhh
Confidence 3356899999999999876
No 213
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=26.76 E-value=56 Score=30.78 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=8.2
Q ss_pred eEECCCeEECCCcEEcCC
Q psy2215 84 IVLTGKVIIQCDAVLRGD 101 (172)
Q Consensus 84 I~Igg~v~I~~~avIrGd 101 (172)
.++.|++..+++++++|+
T Consensus 422 LtV~Gdv~fG~~v~l~G~ 439 (469)
T PLN02474 422 LKVSGDVWFGSGIVLKGK 439 (469)
T ss_pred EEEeeeeEECCCcEEEEE
Confidence 344444444444444444
No 214
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=25.90 E-value=90 Score=28.83 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=24.9
Q ss_pred ceeeeccceecccCCchhhhhhccccccCCee
Q psy2215 41 AVDFLSRGWWFESKSSHKILVYSGAVASGNKV 72 (172)
Q Consensus 41 ~~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~I 72 (172)
.+-..++..|.|+|++++|+++...-..||.+
T Consensus 259 v~vv~~~~~W~DvGsw~~l~~~~~~d~~~n~~ 290 (468)
T TIGR01479 259 AVVVPMDAGWSDVGSWSALWEISDKDADGNVL 290 (468)
T ss_pred EEEEeCCCCccccCCHHHHHHhhcccccCCee
Confidence 34467788999999999999987666666644
No 215
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=24.48 E-value=1.4e+02 Score=21.82 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=23.0
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+..-.+-.+-++.+|--. +|..+.||.||-+|.+-+|.
T Consensus 23 vK~~~g~~V~~G~IivRQ-----RGtk~~PG~nVg~GrD~Tlf 60 (82)
T PRK05435 23 VKRFGGQFVKAGNIIVRQ-----RGTKFHPGVNVGRGKDHTLF 60 (82)
T ss_pred eEecCCEEEcCCcEEEEe-----CCCeECCCCCEeecCCceEE
Confidence 333334444444444432 34456778888888888888
No 216
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=23.36 E-value=17 Score=25.98 Aligned_cols=40 Identities=18% Similarity=0.513 Sum_probs=30.2
Q ss_pred eeCCCceEEeecccceeecccccceeeeecCCCCceeeec
Q psy2215 7 YYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLS 46 (172)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (172)
|-|++.+.+|+..|+-........++|++-.-||...-+.
T Consensus 4 ymn~eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~ 43 (75)
T PF01502_consen 4 YMNKEALEKTLETGRATYYSRSRNRLWRKGETSGNTQKVV 43 (75)
T ss_dssp EE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEE
T ss_pred ecCHHHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEEEE
Confidence 5677788889999999999988889999999999665443
No 217
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=21.86 E-value=41 Score=27.62 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=22.3
Q ss_pred eeeccceecccCCchhhhhhccccccCC
Q psy2215 43 DFLSRGWWFESKSSHKILVYSGAVASGN 70 (172)
Q Consensus 43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn 70 (172)
.+..+|+|.|.++|.++..+..+...+.
T Consensus 222 ~~~~~g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 222 AYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred EEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence 3456799999999999999887765553
No 218
>PRK15313 autotransport protein MisL; Provisional
Probab=20.27 E-value=2.1e+02 Score=29.59 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=29.3
Q ss_pred cccceEECCCeEE----CCCcEEcCC--CcceEECCCCeeCCCCEEccCCccCCCceEEee-CCCeEECCCcEEE
Q psy2215 80 GAQNIVLTGKVII----QCDAVLRGD--LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP-GSTVYLVFTASVR 147 (172)
Q Consensus 80 G~~nI~Igg~v~I----~~~avIrGd--l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p-Gd~V~IG~navI~ 147 (172)
|+.+|.||+++.| ..+.=|+.. .....++..-++|+++.|-..-. -+.++.+.+ |.-+++|.++.|+
T Consensus 182 ~~~~i~~g~~~~i~t~g~~~~g~~~~~~~~~~~~~~~i~~gd~~~i~t~g~-~~~~~~~~~~~~~~~lg~~~~i~ 255 (955)
T PRK15313 182 GSANIYVGDDLYIKTTGSQGRGITANAMRDASRAKNTIVVGNRAHIVTTGD-SSEGLRTGQSGSLIRLGDDATIE 255 (955)
T ss_pred ccceEEEcCceEEEeeccccccccccccccccccccceEecccceEEEecc-cccceeecCCcceEEecCcceEE
Confidence 3456677776666 222222211 00223344444455555442210 012222222 4566777777765
No 219
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=20.18 E-value=1.5e+02 Score=21.89 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=21.4
Q ss_pred eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215 105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR 147 (172)
Q Consensus 105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~ 147 (172)
+..-.+-.+.++.+|--. +|..+.||.||-+|.+-+|.
T Consensus 23 vK~~~gq~V~~G~IivRQ-----RGtk~hPG~NVg~GrD~Tlf 60 (86)
T CHL00121 23 VKRFGGEKVSAGNILIRQ-----RGTKFKPGLNVGCGKDFTLY 60 (86)
T ss_pred eEEcCCEEEcCCcEEEEc-----CCCeECCCCcccccCCceEE
Confidence 333333444444444432 34446677788888877777
Done!