Query psy2219
Match_columns 75
No_of_seqs 101 out of 687
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 99.9 2.3E-28 4.9E-33 192.7 4.4 72 2-74 594-665 (719)
2 PF03098 An_peroxidase: Animal 99.9 1E-26 2.2E-31 177.1 5.5 70 2-74 435-504 (530)
3 PLN02283 alpha-dioxygenase 99.9 1.9E-24 4.1E-29 168.8 5.1 72 2-74 510-582 (633)
4 PF12080 GldM_C: GldM C-termin 51.2 7.4 0.00016 26.4 0.8 27 35-61 148-174 (181)
5 PF11919 DUF3437: Domain of un 44.4 9 0.00019 23.5 0.4 34 35-74 44-77 (90)
6 PF14040 DNase_NucA_NucB: Deox 38.7 11 0.00025 24.0 0.2 12 49-60 102-113 (114)
7 KOG0358|consensus 37.3 22 0.00047 28.0 1.6 36 4-40 200-235 (534)
8 TIGR00292 thiazole biosynthesi 35.8 18 0.0004 25.4 0.9 26 21-46 215-241 (254)
9 PRK04176 ribulose-1,5-biphosph 34.9 19 0.0004 25.4 0.8 26 21-46 216-242 (257)
10 KOG1712|consensus 33.1 5.8 0.00012 27.5 -1.9 45 5-53 44-90 (183)
11 PRK02866 cyanate hydratase; Va 32.9 83 0.0018 21.1 3.6 45 1-48 45-108 (147)
12 COG3082 Uncharacterized protei 31.6 81 0.0018 18.8 3.0 47 4-51 18-64 (74)
13 PLN03242 diacylglycerol o-acyl 30.7 40 0.00086 26.1 2.0 20 41-60 276-295 (410)
14 KOG3951|consensus 30.2 47 0.001 24.8 2.2 47 5-52 85-135 (321)
15 PRK13689 hypothetical protein; 29.8 80 0.0017 19.0 2.8 36 15-50 28-63 (75)
16 KOG3424|consensus 29.3 50 0.0011 21.8 2.1 29 3-34 38-67 (132)
17 PLN02401 diacylglycerol o-acyl 28.6 44 0.00096 26.2 2.0 20 41-60 301-320 (446)
18 PF15005 IZUMO: Izumo sperm-eg 28.6 68 0.0015 21.7 2.7 35 16-56 52-86 (160)
19 PLN02661 Putative thiazole syn 26.4 31 0.00068 26.1 0.8 25 21-45 289-314 (357)
20 PF04726 Microvir_J: Microviru 25.0 27 0.00059 16.5 0.2 11 52-62 11-21 (24)
21 PF08424 NRDE-2: NRDE-2, neces 24.6 72 0.0016 23.1 2.4 26 2-27 2-27 (321)
22 TIGR00140 hupD hydrogenase exp 23.8 50 0.0011 20.6 1.3 22 4-25 2-23 (134)
23 PHA00008 J DNA packaging prote 23.6 28 0.0006 16.8 0.1 11 52-62 12-22 (26)
24 PF03778 DUF321: Protein of un 23.5 21 0.00046 16.3 -0.3 7 56-62 2-8 (20)
25 PF13428 TPR_14: Tetratricopep 23.1 95 0.0021 15.4 2.1 22 4-25 19-41 (44)
26 COG3764 SrtA Sortase (surface 22.2 9.8 0.00021 26.8 -2.4 48 15-63 92-147 (210)
27 PF14907 NTP_transf_5: Unchara 21.3 41 0.00089 22.7 0.6 16 9-24 82-102 (249)
28 COG1635 THI4 Ribulose 1,5-bisp 21.2 38 0.00082 24.8 0.4 26 21-46 221-247 (262)
29 PF07904 Eaf7: Chromatin modif 21.1 70 0.0015 19.4 1.5 18 3-20 47-66 (91)
30 PF08633 Rox3: Rox3 mediator c 21.0 52 0.0011 23.0 1.0 35 4-41 33-72 (192)
31 PF12826 HHH_2: Helix-hairpin- 20.8 87 0.0019 17.4 1.8 46 3-51 13-58 (64)
No 1
>KOG2408|consensus
Probab=99.95 E-value=2.3e-28 Score=192.66 Aligned_cols=72 Identities=49% Similarity=0.834 Sum_probs=69.1
Q ss_pred CHHHHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHhhcCccccccCCCCCCCCCccccC
Q psy2219 2 AKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFTKQLYS 74 (75)
Q Consensus 2 ~~e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rlr~gDRf~yen~~~~~~ft~~ql~ 74 (75)
+++++++|+.+|++|||||||||+++|++++|+++|||++|||++||+|+|+|||||||| .+|+.||++||.
T Consensus 594 ~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-~~~~~Ft~~QL~ 665 (719)
T KOG2408|consen 594 EPEIINKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-FNPGVFTPEQLE 665 (719)
T ss_pred hHHHHHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecC-CCCCccCHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999 688999999985
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.93 E-value=1e-26 Score=177.11 Aligned_cols=70 Identities=53% Similarity=0.955 Sum_probs=65.2
Q ss_pred CHHHHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHhhcCccccccCCCCCCCCCccccC
Q psy2219 2 AKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFTKQLYS 74 (75)
Q Consensus 2 ~~e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rlr~gDRf~yen~~~~~~ft~~ql~ 74 (75)
+++++++|+++|++|+|||||||+++|++++|+++|||++|||++||.|+|+||||||||+ +.||++||+
T Consensus 435 ~~~i~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen~---~~ft~~ql~ 504 (530)
T PF03098_consen 435 DEEIAAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYENP---GSFTPEQLE 504 (530)
T ss_dssp SHHHHHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTSC---TTCTHHHHH
T ss_pred HHHHHHHHHHhccchhcccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccCc---CcCCHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999999966 899999974
No 3
>PLN02283 alpha-dioxygenase
Probab=99.90 E-value=1.9e-24 Score=168.77 Aligned_cols=72 Identities=29% Similarity=0.398 Sum_probs=68.1
Q ss_pred CHHHHHHHHHhhC-CCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHhhcCccccccCCCCCCCCCccccC
Q psy2219 2 AKSTIAKLKSLYK-KVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFTKQLYS 74 (75)
Q Consensus 2 ~~e~~~~L~~lY~-~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rlr~gDRf~yen~~~~~~ft~~ql~ 74 (75)
+++++++|+++|+ +|||||||||+++|++++|+.+|||+.||+..||.|+++||||||||. +|+.||++|++
T Consensus 510 d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~-np~~fT~~gl~ 582 (633)
T PLN02283 510 DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNF-NEKTYTKKGLE 582 (633)
T ss_pred CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecC-CcCcCCHHHHH
Confidence 5789999999998 899999999999999999999999999999999999999999999987 58999999984
No 4
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=51.17 E-value=7.4 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHhhcCccccccC
Q psy2219 35 IVGPTFRCILAEQFIRTRAGDRFFYDN 61 (75)
Q Consensus 35 ~~Gpt~~cii~~qf~rlr~gDRf~yen 61 (75)
.-|..|+--+...+.+++.||||+..+
T Consensus 148 ~~G~~~s~~~~~~l~~~~~Gd~i~I~~ 174 (181)
T PF12080_consen 148 VNGNKFSARAKSALRKAKRGDRIYISD 174 (181)
T ss_pred cccccccHHHHHHHHhcCCCCEEEEEE
Confidence 356677777788999999999998764
No 5
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=44.44 E-value=9 Score=23.46 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHhhcCccccccCCCCCCCCCccccC
Q psy2219 35 IVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFTKQLYS 74 (75)
Q Consensus 35 ~~Gpt~~cii~~qf~rlr~gDRf~yen~~~~~~ft~~ql~ 74 (75)
.++.|....+. .|+|...-. |.+.. ..||++||+
T Consensus 44 ~I~~tvk~tl~-eFkrtH~D~--W~~~~---~~Ft~~ql~ 77 (90)
T PF11919_consen 44 PIRTTVKKTLS-EFKRTHQDT--WHEHK---KKFTEDQLE 77 (90)
T ss_dssp SHHHHTHHHHH-HHHHHTSTT--HHHHG---GG--SSTTG
T ss_pred hHHHHHHHHHH-HHHHhCccc--HHHHH---HhCCHHHHH
Confidence 45556666655 788888544 44444 689999985
No 6
>PF14040 DNase_NucA_NucB: Deoxyribonuclease NucA/NucB
Probab=38.75 E-value=11 Score=23.95 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=9.4
Q ss_pred HHhhcCcccccc
Q psy2219 49 IRTRAGDRFFYD 60 (75)
Q Consensus 49 ~rlr~gDRf~ye 60 (75)
.++.+||+|+..
T Consensus 102 ~~~~dG~~f~v~ 113 (114)
T PF14040_consen 102 NRILDGDKFYVI 113 (114)
T ss_pred cCCCCCCEEEEe
Confidence 477799999864
No 7
>KOG0358|consensus
Probab=37.31 E-value=22 Score=28.02 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHH
Q psy2219 4 STIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTF 40 (75)
Q Consensus 4 e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~ 40 (75)
..++..+++=|++||.+++-|.+++....++. |||=
T Consensus 200 kdIkivkklGgtvdDte~i~glvl~~~~~~~~-gptr 235 (534)
T KOG0358|consen 200 KDIKIVKKLGGTVDDTELIKGLVLTQKASKSA-GPTR 235 (534)
T ss_pred hhhhhHHhhCCccchhhhhcceEEeeecccCC-Ccch
Confidence 44566777778999999999999999987766 8873
No 8
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=35.76 E-value=18 Score=25.44 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=19.1
Q ss_pred hhhhhhccccCC-CCCCChHHHHHHHH
Q psy2219 21 LIVGGIAEVAQD-GAIVGPTFRCILAE 46 (75)
Q Consensus 21 L~vG~l~E~~~~-g~~~Gpt~~cii~~ 46 (75)
|||+||+=..+. +-++||+|.-++..
T Consensus 215 ~~~~gm~~~~~~~~~rmgp~fg~m~~s 241 (254)
T TIGR00292 215 LYVAGMAVAAVHGLPRMGPIFGGMLLS 241 (254)
T ss_pred EEEechhhhhhcCCCCcCchHHHHHHh
Confidence 677888766654 45899999977664
No 9
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=34.91 E-value=19 Score=25.37 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=19.0
Q ss_pred hhhhhhccccCC-CCCCChHHHHHHHH
Q psy2219 21 LIVGGIAEVAQD-GAIVGPTFRCILAE 46 (75)
Q Consensus 21 L~vG~l~E~~~~-g~~~Gpt~~cii~~ 46 (75)
|||+||+=..+. +-++||+|.-++..
T Consensus 216 ~~~~gm~~~~~~~~~rmg~~fg~m~~s 242 (257)
T PRK04176 216 LYVAGMAANAVHGLPRMGPIFGGMLLS 242 (257)
T ss_pred EEEeehhhhhhcCCCccCchhHhHHHh
Confidence 677888766654 45899999876654
No 10
>KOG1712|consensus
Probab=33.14 E-value=5.8 Score=27.52 Aligned_cols=45 Identities=29% Similarity=0.461 Sum_probs=32.5
Q ss_pred HHHHHHHhhCC-C-CcchhhhhhhccccCCCCCCChHHHHHHHHHHHHhhc
Q psy2219 5 TIAKLKSLYKK-V-DDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRA 53 (75)
Q Consensus 5 ~~~~L~~lY~~-~-ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rlr~ 53 (75)
++..+...|.+ . ..||..+|.=+ .|-++||+.+--++--|.-+|+
T Consensus 44 lidlf~~h~~~~~~~~Id~iaGlEa----RGFLFGP~iAlalG~~fVPiRK 90 (183)
T KOG1712|consen 44 LIDLFVDHYRETFEMKIDVIAGLEA----RGFLFGPSIALALGAGFVPIRK 90 (183)
T ss_pred HHHHHHHHHHHHhcCcceEEEeeee----cceecCcHHHHHhCCCeeeccc
Confidence 45556666653 3 34898888755 6889999999888888876663
No 11
>PRK02866 cyanate hydratase; Validated
Probab=32.86 E-value=83 Score=21.06 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhhCCCCcchhhhhhhccccCCCC-------------------CCChHHHHHHHHHH
Q psy2219 1 MAKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGA-------------------IVGPTFRCILAEQF 48 (75)
Q Consensus 1 ~~~e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~-------------------~~Gpt~~cii~~qf 48 (75)
++++.++++.++.+-+++ .+..+.+-|..|+ ..|+++..+|-++|
T Consensus 45 ls~e~A~kla~~LgL~~~---~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vYG~~~K~~i~E~F 108 (147)
T PRK02866 45 LPAEEAEKVAELLGLDED---AVALLQEVPYRGSLPPAVPTDPLIYRFYEMVQVYGTTLKALIHEKF 108 (147)
T ss_pred CCHHHHHHHHHHhCCCHH---HHHHHhcCCcCCCCCCCCCCCcHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 467889999998874444 3344555666664 35788888888877
No 12
>COG3082 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.59 E-value=81 Score=18.82 Aligned_cols=47 Identities=28% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHh
Q psy2219 4 STIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRT 51 (75)
Q Consensus 4 e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rl 51 (75)
|++..|.+.- .|-|+-|.|-|-+-.-+-.+.++|.-...|+.-|.+.
T Consensus 18 e~iaVLeKH~-ap~dLsLmvlGNmvtNlintsVa~aQr~alA~~Fa~a 64 (74)
T COG3082 18 ELIAVLEKHK-APTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARA 64 (74)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444454433 4556777765555455567789999999999999864
No 13
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=30.66 E-value=40 Score=26.14 Aligned_cols=20 Identities=30% Similarity=0.188 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhcCcccccc
Q psy2219 41 RCILAEQFIRTRAGDRFFYD 60 (75)
Q Consensus 41 ~cii~~qf~rlr~gDRf~ye 60 (75)
.|++.--..-+|-|||-||+
T Consensus 276 h~~LN~~AEltrFgDR~FY~ 295 (410)
T PLN03242 276 HLWLNIVAELLCFGDREFYK 295 (410)
T ss_pred HHHHHHHHHHHHhhhhhhhh
Confidence 34444445678999999997
No 14
>KOG3951|consensus
Probab=30.19 E-value=47 Score=24.76 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHH----HHHHHHHHHHhh
Q psy2219 5 TIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTF----RCILAEQFIRTR 52 (75)
Q Consensus 5 ~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~----~cii~~qf~rlr 52 (75)
.+.++++.|+++-.||-.|-.++..-..| -+.|+- ...+++||.++-
T Consensus 85 lV~r~k~~ye~~~~lek~v~~llg~L~~~-pl~~~~~l~~~QalaKQfAeil 135 (321)
T KOG3951|consen 85 LVGRTKSYYEHVAKIEKIVPIILGSLSSG-PLPLEEQLANKQALAKQFAEIL 135 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHHHHHHH
Confidence 45788999999999998888888666443 333442 278899998764
No 15
>PRK13689 hypothetical protein; Provisional
Probab=29.84 E-value=80 Score=19.00 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHH
Q psy2219 15 KVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIR 50 (75)
Q Consensus 15 ~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~r 50 (75)
-|-|+-|+|-|-+=..+-.+.++|.-+..|+++|..
T Consensus 28 Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~ 63 (75)
T PRK13689 28 APTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFAR 63 (75)
T ss_pred CCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 466788888777766766778889999999999985
No 16
>KOG3424|consensus
Probab=29.26 E-value=50 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhC-CCCcchhhhhhhccccCCCC
Q psy2219 3 KSTIAKLKSLYK-KVDDIDLIVGGIAEVAQDGA 34 (75)
Q Consensus 3 ~e~~~~L~~lY~-~~ddiDL~vG~l~E~~~~g~ 34 (75)
.|+.++|+++|. ++|. .+-.=.+.+.-|+
T Consensus 38 ~EirEKla~mYkt~~d~---V~vfgfrt~~Ggg 67 (132)
T KOG3424|consen 38 TEIREKLAKMYKTTPDA---VFVFGFRTHFGGG 67 (132)
T ss_pred HHHHHHHHHHhcCCcce---EEEEEeeeccCCc
Confidence 478999999999 5554 3333345565443
No 17
>PLN02401 diacylglycerol o-acyltransferase
Probab=28.64 E-value=44 Score=26.20 Aligned_cols=20 Identities=35% Similarity=0.301 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhcCcccccc
Q psy2219 41 RCILAEQFIRTRAGDRFFYD 60 (75)
Q Consensus 41 ~cii~~qf~rlr~gDRf~ye 60 (75)
.|++.--..-+|-|||-||.
T Consensus 301 h~~LN~~AEltrFgDR~FY~ 320 (446)
T PLN02401 301 HLWLNILAELLRFGDREFYK 320 (446)
T ss_pred HHHHHHHHHHHhhhhhhhhh
Confidence 35555555678999999997
No 18
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=28.56 E-value=68 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHhhcCcc
Q psy2219 16 VDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDR 56 (75)
Q Consensus 16 ~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rlr~gDR 56 (75)
+.+.|-|+|.+.|+.+. ..+-.+..|++|+.++|-
T Consensus 52 ~~~~~a~~g~vd~~~L~------~va~~~~~~lkrl~~s~~ 86 (160)
T PF15005_consen 52 PYAEDAFMGVVDEDTLD------KVAWSFKNQLKRLTDSDL 86 (160)
T ss_pred ccchhhhhhhccHHHHH------HHHHHHHHHHHHHhcCCc
Confidence 44455566666665542 567788899999998873
No 19
>PLN02661 Putative thiazole synthesis
Probab=26.41 E-value=31 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=18.2
Q ss_pred hhhhhhccccCCC-CCCChHHHHHHH
Q psy2219 21 LIVGGIAEVAQDG-AIVGPTFRCILA 45 (75)
Q Consensus 21 L~vG~l~E~~~~g-~~~Gpt~~cii~ 45 (75)
|||+||+=..+.| -++||+|.-++.
T Consensus 289 l~~~gm~~~~~~g~~rmgp~fg~m~~ 314 (357)
T PLN02661 289 MIVTGMEVAEIDGSPRMGPTFGAMMI 314 (357)
T ss_pred EEEeccchhhhcCCCccCchhHhHHh
Confidence 6888887666654 489999976554
No 20
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=25.02 E-value=27 Score=16.52 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=4.5
Q ss_pred hcCccccccCC
Q psy2219 52 RAGDRFFYDNP 62 (75)
Q Consensus 52 r~gDRf~yen~ 62 (75)
+.|-|.||--.
T Consensus 11 ~kgarlwyvgg 21 (24)
T PF04726_consen 11 RKGARLWYVGG 21 (24)
T ss_dssp SSSS----SSS
T ss_pred cCceEEEEecc
Confidence 57889999643
No 21
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=24.57 E-value=72 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhhCCCCcchhhhhhhc
Q psy2219 2 AKSTIAKLKSLYKKVDDIDLIVGGIA 27 (75)
Q Consensus 2 ~~e~~~~L~~lY~~~ddiDL~vG~l~ 27 (75)
..+.++.=+++-.+|.||+.|+-.+.
T Consensus 2 ~~r~~el~~~v~~~P~di~~Wl~li~ 27 (321)
T PF08424_consen 2 RKRTAELNRRVRENPHDIEAWLELIE 27 (321)
T ss_pred chHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34566777778889999999998773
No 22
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=23.76 E-value=50 Score=20.58 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCCcchhhhhh
Q psy2219 4 STIAKLKSLYKKVDDIDLIVGG 25 (75)
Q Consensus 4 e~~~~L~~lY~~~ddiDL~vG~ 25 (75)
+++++|++.|..+++|+++-|+
T Consensus 2 ~v~~~L~~~~~~~~~v~vid~g 23 (134)
T TIGR00140 2 RLVEALQQRYAFPDNVTLLDGG 23 (134)
T ss_pred HHHHHHHHhCCCCCCeEEEecC
Confidence 5788999999877777665443
No 23
>PHA00008 J DNA packaging protein
Probab=23.56 E-value=28 Score=16.80 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=8.2
Q ss_pred hcCccccccCC
Q psy2219 52 RAGDRFFYDNP 62 (75)
Q Consensus 52 r~gDRf~yen~ 62 (75)
+.|-|.||--.
T Consensus 12 ~KGARLWYVGG 22 (26)
T PHA00008 12 RKGARLWYVGG 22 (26)
T ss_pred cCceEEEEecc
Confidence 57889999643
No 24
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=23.50 E-value=21 Score=16.32 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=5.5
Q ss_pred cccccCC
Q psy2219 56 RFFYDNP 62 (75)
Q Consensus 56 Rf~yen~ 62 (75)
|||=||.
T Consensus 2 rFwreN~ 8 (20)
T PF03778_consen 2 RFWRENH 8 (20)
T ss_pred ccceeec
Confidence 7888876
No 25
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=23.13 E-value=95 Score=15.42 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=14.7
Q ss_pred HHHHHHHHhhC-CCCcchhhhhh
Q psy2219 4 STIAKLKSLYK-KVDDIDLIVGG 25 (75)
Q Consensus 4 e~~~~L~~lY~-~~ddiDL~vG~ 25 (75)
+.++.++++-. +|+|.+.|...
T Consensus 19 ~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 19 EAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHCcCCHHHHHHh
Confidence 34566666666 88888887643
No 26
>COG3764 SrtA Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]
Probab=22.18 E-value=9.8 Score=26.76 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCcchhhhhhhccccCCCC-----CCChHHHHHHHHHH---HHhhcCccccccCCC
Q psy2219 15 KVDDIDLIVGGIAEVAQDGA-----IVGPTFRCILAEQF---IRTRAGDRFFYDNPG 63 (75)
Q Consensus 15 ~~ddiDL~vG~l~E~~~~g~-----~~Gpt~~cii~~qf---~rlr~gDRf~yen~~ 63 (75)
+.+++..=+|.+-|.++||. +.|.... --..+| -.+|.||.+++++.+
T Consensus 92 ~~~~L~~Gvgh~~~~~~pG~~gn~~laGHr~~-~~~~~F~~L~~lk~GD~iyv~~~~ 147 (210)
T COG3764 92 DEEDLLYGVGHYKESQVPGENGNYVLAGHRGT-RYGSLFRPLGKLKVGDKIYVTTKN 147 (210)
T ss_pred CHHHhhcCccccccccCCCCCCcEEEEecccc-cccccccchhhhcCCCEEEEEeCC
Confidence 34456677888888888871 2222221 112334 468899999998664
No 27
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=21.26 E-value=41 Score=22.66 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=12.1
Q ss_pred HHHhhCCC-----Ccchhhhh
Q psy2219 9 LKSLYKKV-----DDIDLIVG 24 (75)
Q Consensus 9 L~~lY~~~-----ddiDL~vG 24 (75)
|+.+|+++ .|||++|-
T Consensus 82 l~~~Y~~~~~R~~~DiDlLV~ 102 (249)
T PF14907_consen 82 LAQLYPDPGLRPMGDIDLLVP 102 (249)
T ss_pred HHHhCCCCCCCCCCCeEEEEe
Confidence 44588765 89999985
No 28
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=21.23 E-value=38 Score=24.81 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=19.8
Q ss_pred hhhhhhccccCCC-CCCChHHHHHHHH
Q psy2219 21 LIVGGIAEVAQDG-AIVGPTFRCILAE 46 (75)
Q Consensus 21 L~vG~l~E~~~~g-~~~Gpt~~cii~~ 46 (75)
||++||+=..+.| -++||+|.-++..
T Consensus 221 L~vaGMa~~av~G~pRMGPiFGgMllS 247 (262)
T COG1635 221 LYVAGMAVNAVHGLPRMGPIFGGMLLS 247 (262)
T ss_pred eEeehhhHHhhcCCcccCchhhhhhhc
Confidence 7899998777654 4899999866653
No 29
>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S. cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex
Probab=21.13 E-value=70 Score=19.41 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhC--CCCcch
Q psy2219 3 KSTIAKLKSLYK--KVDDID 20 (75)
Q Consensus 3 ~e~~~~L~~lY~--~~ddiD 20 (75)
++++++|+.+|+ -.|+++
T Consensus 47 ~~IW~kL~~~YdL~~lde~E 66 (91)
T PF07904_consen 47 DDIWKKLRTLYDLEALDELE 66 (91)
T ss_pred HHHHHHHHHhcCHHHhcccc
Confidence 478999999997 566665
No 30
>PF08633 Rox3: Rox3 mediator complex subunit; InterPro: IPR013942 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the Med19 subunit of the Mediator complex in fungi. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.97 E-value=52 Score=22.97 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=25.9
Q ss_pred HHHHHHHHhhC-CCCcchhhhhhhc----cccCCCCCCChHHH
Q psy2219 4 STIAKLKSLYK-KVDDIDLIVGGIA----EVAQDGAIVGPTFR 41 (75)
Q Consensus 4 e~~~~L~~lY~-~~ddiDL~vG~l~----E~~~~g~~~Gpt~~ 41 (75)
|-+.+||+.|+ ++-++ .|..- |+..+|++..++..
T Consensus 33 eK~nkLRKSYkg~Ik~L---~Gk~~~v~~~~~~~ggl~~~~~~ 72 (192)
T PF08633_consen 33 EKINKLRKSYKGHIKDL---AGKFKPVKTDPNGPGGLLDPILF 72 (192)
T ss_pred hHHHHHHHHHHHHHHhc---cCCCcccCCCCCCCccchhHHHh
Confidence 56789999997 88875 77776 55556777777763
No 31
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.82 E-value=87 Score=17.41 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCcchhhhhhhccccCCCCCCChHHHHHHHHHHHHh
Q psy2219 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRT 51 (75)
Q Consensus 3 ~e~~~~L~~lY~~~ddiDL~vG~l~E~~~~g~~~Gpt~~cii~~qf~rl 51 (75)
+.+++.|.+.|++.+. +...-.|+-..=--+||..+.-|.+.|..-
T Consensus 13 ~~~ak~L~~~f~sl~~---l~~a~~e~L~~i~gIG~~~A~si~~ff~~~ 58 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEA---LMNASVEELSAIPGIGPKIAQSIYEFFQDP 58 (64)
T ss_dssp HHHHHHHHHCCSCHHH---HCC--HHHHCTSTT--HHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCHHH---HHHcCHHHHhccCCcCHHHHHHHHHHHCCH
Confidence 4678899998887544 333344443221249999998888877643
Done!