RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2219
(75 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 122 bits (308), Expect = 2e-35
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 1 MAKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYD 60
M+ TI KL+ LYK VDDIDL VGG++E G +VGPTF CI+ EQF R R GDRF+Y+
Sbjct: 291 MSPETIQKLRRLYKSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYE 350
Query: 61 NPGQPSSFTK-QL 72
N GQPSSFT QL
Sbjct: 351 NGGQPSSFTPAQL 363
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 102 bits (257), Expect = 1e-27
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
+ KLK LY DDIDL VGG+AE G +VGPTF CI+AEQF+R R GDRF+Y+NP
Sbjct: 427 EELAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYENP 486
Query: 63 GQPSSFTKQ 71
G FT +
Sbjct: 487 G---VFTGE 492
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 93.9 bits (234), Expect = 1e-24
Identities = 38/69 (55%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 5 TIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQ 64
KLK LY +IDL VGGI E GA VGPT C+LAEQF R R GDRF+Y+NPG
Sbjct: 334 VREKLKRLYGHPGNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWYENPG- 392
Query: 65 PSSFTK-QL 72
F+ QL
Sbjct: 393 --VFSPAQL 399
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 91.2 bits (227), Expect = 1e-23
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 7 AKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPG 63
A+L S+Y VD IDL VGG+AE +G +VG TF I+A+QF R R GDRFFY+N
Sbjct: 330 ARLASVYGDVDQIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYENDD 386
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 74.8 bits (184), Expect = 8e-18
Identities = 26/66 (39%), Positives = 32/66 (48%)
Query: 6 IAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQP 65
KL LY DD+DL VGG+ E A +G I+ EQF R GDRF+Y N
Sbjct: 290 AKKLAELYGDPDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYVNYNPF 349
Query: 66 SSFTKQ 71
K+
Sbjct: 350 GKSGKE 355
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 71.7 bits (176), Expect = 1e-16
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
++ K+ LYK D+ID+ +GG+AE GA GP F C++ +Q R GDRF+++N
Sbjct: 447 QAVADKILDLYKHPDNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWENS 506
Query: 63 G 63
Sbjct: 507 N 507
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 65.9 bits (161), Expect = 2e-14
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 8 KLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSS 67
KL LY D+ID+ +GG+AE G VGP C+++ QF R R GDRF+++NPG
Sbjct: 313 KLLDLYGTPDNIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFWWENPG---V 369
Query: 68 FTKQ 71
FT++
Sbjct: 370 FTEE 373
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 58.5 bits (142), Expect = 7e-12
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 6 IAKLKSLY-KKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDN 61
+ +L LY + +DL VGG+ E G G FR I+ +QF R R GDRF+++N
Sbjct: 431 LERLAELYGNDLSKLDLYVGGMLESKGGGP--GELFRAIILDQFQRLRDGDRFWFEN 485
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 50.5 bits (121), Expect = 4e-09
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 16 VDDIDLIVGGIAEV-AQDGAIVGPTFRCILAEQFIRTRAGDRFFY 59
+D++DL VGG+AE G ++G TF + EQ R + GDRF+Y
Sbjct: 483 LDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYY 527
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 35.4 bits (82), Expect = 0.001
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 8 KLKSLYKKVDDIDLIVGGIAEVAQD----GAIVGPTF---RCILAEQFIRTRAGDRF 57
L+ LY D+++L G +AE A+ G+ + P + R IL++ R GDRF
Sbjct: 418 ALELLYGHPDNVELYPGLVAEDAKPPMPPGSGLCPGYTISRAILSDAVALVR-GDRF 473
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 7 AKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPT 39
A+L+ LY VD ++ VG AE + + + P
Sbjct: 402 AELEELYGDVDAVEFYVGLFAEDPRPNSPLPPL 434
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 31.5 bits (72), Expect = 0.020
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 2 AKSTIAKLKSLY-KKVDDIDLIVGGIAEVAQDG-AIVGPTFRCILAEQFI----RTRAGD 55
+ A+L+ +Y V+ +DL+VG +AE G FR FI R D
Sbjct: 379 DEEVAAELREVYGGDVEKVDLLVGLLAEPLPPGFGFSDTAFRI-----FILMASRRLKSD 433
Query: 56 RFFYDNPGQPSSFTKQLYSP 75
RFF ++ F ++Y+P
Sbjct: 434 RFFTND------FRPEVYTP 447
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 28.8 bits (65), Expect = 0.20
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 27 AEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFT 69
AEV G +GP I+AE FI GD Y + G +T
Sbjct: 400 AEVRGGGNRLGPVGSRIVAEVFIGLLEGDPSSYLSLGFNPDWT 442
>gnl|CDD|163652 cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related
proteins, N-terminal metallophosphatase domain. CD73 is
a mammalian ecto-5'-nucleotidase expressed in
endothelial cells and lymphocytes that catalyzes the
conversion of 5'-AMP to adenosine in the final step of a
pathway that generates adenosine from ATP. This pathway
also includes a CD39 nucleoside triphosphate
dephosphorylase that mediates the dephosphorylation of
ATP to ADP and then to 5'-AMP. These enzymes all have
an N-terminal metallophosphatase domain and a C-terminal
5'nucleotidase domain. The N-terminal
metallophosphatase domain belongs to a large superfamily
of distantly related metallophosphatases (MPPs) that
includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA
lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 281
Score = 28.3 bits (64), Expect = 0.26
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 10 KSLYKKVDDIDLIVGG 25
K + +KV +D+IVGG
Sbjct: 198 KEIARKVPGVDVIVGG 213
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 26.8 bits (60), Expect = 0.97
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 20 DLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYD 60
D G A+ A + C L E F R G+R ++D
Sbjct: 346 DDAPGDPAQGDAPPARIS----CTLPEAFRAARVGERVWFD 382
>gnl|CDD|114220 pfam05484, LRV_FeS, LRV protein FeS4 cluster. This Iron sulphur
cluster is found at the N-terminus of some proteins
containing pfam01816 repeats.
Length = 57
Score = 25.2 bits (55), Expect = 1.6
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 38 PTFRCILAEQFIRTRAG---DRFFYDNPG 63
+ RC + + R+ DRFF NP
Sbjct: 24 ESGRCTPGDSCVADRSARRIDRFFRLNPE 52
>gnl|CDD|215643 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
Length = 1315
Score = 26.0 bits (57), Expect = 1.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 3 KSTIAKLKSLYKKVDDI 19
+ T+AKLKSLY DD
Sbjct: 1290 EETLAKLKSLYSDADDE 1306
>gnl|CDD|187756 cd09299, TDT, The Tellurite-resistance/Dicarboxylate Transporter
(TDT) family. The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family includes members from all three
kingdoms, but only three members of the family have been
functionally characterized: the TehA protein of E. coli
functioning as a tellurite-resistance uptake permease,
the Mae1 protein of S. pombe functioning in the uptake
of malate and other dicarboxylates, and the sulfite
efflux pump (SSU1) of Saccharomyces cerevisiae. In
plants, the plasma membrane protein SLAC1 (Slow Anion
Channel-Associated 1), which is preferentially expressed
in guard cells, encodes a distant homolog of fungal and
bacterial dicarboxylate/malic acid transport proteins.
SLAC1 is essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane alpha-helical
spanners (TMSs).
Length = 326
Score = 25.8 bits (57), Expect = 2.2
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 27 AEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSSFTKQLYS 74
++GP + I A + A FF S
Sbjct: 204 QLAPTLMIVLGPMGQSIFALLLLGKNARLIFFL--YASFLQALAVFAS 249
>gnl|CDD|218639 pfam05564, Auxin_repressed, Dormancy/auxin associated protein.
This family contains several plant dormancy-associated
and auxin-repressed proteins the function of which are
poorly understood.
Length = 119
Score = 25.6 bits (56), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 49 IRTRAGDRFFYDNPGQPSSFTK--QLYS 74
+ T+ +D P P+S T LYS
Sbjct: 84 LATKTIGANLFDKPSHPNSPTVYDWLYS 111
>gnl|CDD|169939 PRK09517, PRK09517, multifunctional thiamine-phosphate
pyrophosphorylase/synthase/phosphomethylpyrimidine
kinase; Provisional.
Length = 755
Score = 25.7 bits (56), Expect = 2.4
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 26 IAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
IA V + GP R A F+ +R F+D
Sbjct: 713 IARVEKALENAGPEQRVDAARAFLSASVHEREFFDQA 749
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 25.1 bits (54), Expect = 3.8
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 14 KKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDR----FFYDNPGQPSSFT 69
++D + + +++ DGA V F L + F + ++ F+ D Q +
Sbjct: 392 GRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQ-ERYP 450
Query: 70 KQ 71
K+
Sbjct: 451 KK 452
>gnl|CDD|236505 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 1163
Score = 25.2 bits (55), Expect = 3.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 12 LYKKVDDIDLIVGG 25
L KKV +D I+
Sbjct: 864 LAKKVKGVDAIISA 877
>gnl|CDD|216713 pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase
or penicillin acylase EC:3.5.1.11 catalyzes the
hydrolysis of benzylpenicillin to phenylacetic acid and
6-aminopenicillanic acid (6-APA) a key intermediate in
the the synthesis of penicillins. Also in the family are
cephalosporin acylase and aculeacin A acylase, which are
involved in the synthesis of related peptide
antibiotics.
Length = 668
Score = 25.0 bits (55), Expect = 3.9
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 23 VGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNPGQPSS 67
+G + G +F ++ + RA G P+S
Sbjct: 593 ASYGPGGGYNGPVWGVSFGSMVVDFGDGVRARGILPGGQSGNPAS 637
>gnl|CDD|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit
(mitochondrial delta subunit) [Energy production and
conversion].
Length = 135
Score = 24.5 bits (54), Expect = 4.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIR 50
K + ++K+ ++ + GG EV + ILA+ R
Sbjct: 46 KPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEV-------TILADSAER 86
>gnl|CDD|188254 TIGR02845, spore_V_AD, stage V sporulation protein AD. Bacillus
and Clostridium species contain about 10 % dipicolinic
acid (pyridine-2,6-dicarboxylic acid) by weight. This
protein family, SpoVAD, belongs to the spoVA operon that
is suggested to act in the transport of dipicolinic acid
(DPA) from the mother cell, where DPA is synthesized, to
the forespore, a process essential to sporulation.
Members of this protein family are found, so far, in
exactly those species believed capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 327
Score = 24.7 bits (54), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 2 AKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVG-PTFRCILAEQ 47
A + K + VDD DLIV G D + VG R +L E+
Sbjct: 205 ADTIEQHFKDTGRTVDDYDLIVTG------DLSRVGSEILRDLLKER 245
>gnl|CDD|222893 PHA02587, 30, DNA ligase; Provisional.
Length = 488
Score = 24.7 bits (54), Expect = 6.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 13 YKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRF 57
+K+V DIDL + G+ E +D VG F A I G
Sbjct: 360 FKEVIDIDLEIVGVYEHKKDPNKVG-GFTLESACGKITVNTGSGL 403
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate.
Length = 242
Score = 24.4 bits (54), Expect = 6.8
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 4 STIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILA 45
+ +A L L K VD E+A+ A + ++
Sbjct: 119 AALAGLTGLGKGVDSSSSDEEDALELAKALAR---KYGAVVV 157
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 24.3 bits (53), Expect = 8.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 2 AKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILA 45
+ + +LK + + ID+I G + E + TF IL
Sbjct: 134 VEQILRELKIGVELGEGIDIIGGVVVESRDGKIRLDNTFESILE 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.403
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,896,961
Number of extensions: 310897
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 29
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)