RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2219
(75 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 99.8 bits (248), Expect = 1e-26
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
K A+LK+LY +D ++L + E + AI G T + A ++ G+
Sbjct: 454 KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQY 513
Query: 63 GQPSSFTKQ 71
+PS+F +
Sbjct: 514 WKPSTFGGE 522
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 98.6 bits (245), Expect = 3e-26
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
K A+L+ LY +D ++ G + E +I G + + A ++ G+
Sbjct: 454 KEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEY 513
Query: 63 GQPSSFTKQ 71
+ S+F +
Sbjct: 514 WKASTFGGE 522
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 77.2 bits (189), Expect = 1e-18
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
KL Y ++ID+ +GG++E + VGP CI+ QF + R GDRF+++N
Sbjct: 346 LKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENE 405
Query: 63 G 63
G
Sbjct: 406 G 406
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 76.2 bits (186), Expect = 3e-18
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 3 KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
K KL LYK D+ID+ +GG AE + VGP C+L QF + R GDRF+++NP
Sbjct: 474 KILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENP 533
Query: 63 G 63
G
Sbjct: 534 G 534
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.32
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 26/46 (56%)
Query: 3 KSTIAKLKS---LYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILA 45
K + KL++ LY A D A P LA
Sbjct: 19 KQALKKLQASLKLY----------------ADDSA---PA----LA 41
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 26.7 bits (60), Expect = 0.64
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 4 STIAKLKSLYKKVDDIDLIV-GG-----IAEVAQDGA 34
+ K+ L + +D+ V GG + + A+ GA
Sbjct: 155 DMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGA 191
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 26.5 bits (59), Expect = 0.84
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 14 KKVDDIDLIVGG 25
+++ + +IVGG
Sbjct: 226 RRLVGVQVIVGG 237
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 26.0 bits (58), Expect = 0.98
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 4 STIAKLKSLYKKVDDIDLIV-GG-----IAEVAQDGA 34
+ K+ L KK ++++ V GG A GA
Sbjct: 159 DMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGA 195
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 25.6 bits (57), Expect = 1.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 4 STIAKLKSLYKKVDDIDLIV-GGI-----AEVAQDGA 34
+ K+++L KK +D+ V GG+ A GA
Sbjct: 159 EMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGA 195
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 25.8 bits (57), Expect = 1.6
Identities = 3/14 (21%), Positives = 8/14 (57%)
Query: 12 LYKKVDDIDLIVGG 25
+V +D+++ G
Sbjct: 219 TASQVKGLDILITG 232
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics,
PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus
subtilis subsp}
Length = 341
Score = 25.4 bits (56), Expect = 1.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 12 LYKKVDDIDLIVGG 25
L K ID I+ G
Sbjct: 235 LATKTKGIDAIISG 248
>3afv_A DYP; DYE-decolorizing peroxidase, beta barrel, oxidoreductas
aspartic acid; HET: HEM NAG; 1.40A {Bjerkandera adusta}
PDB: 2d3q_A* 3mm2_A* 3mm3_A* 3mm1_A*
Length = 442
Score = 25.1 bits (54), Expect = 2.1
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 17 DDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFF 58
I+ I+G G F+ + G+ FF
Sbjct: 388 PGIEPIIGQTTPRTVGGLDPLNQNETFTVPLFVIPKGGEYFF 429
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative
involvement in human inherited and disorders of purkinje
cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Length = 205
Score = 24.9 bits (54), Expect = 2.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 38 PTFRCILAEQFIRTRAGDR 56
FR I A+ +++ A DR
Sbjct: 128 RKFRVICADSYLKNFASDR 146
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 24.7 bits (54), Expect = 3.0
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 14 KKVDDIDLIVGG 25
+V +D I+ G
Sbjct: 230 SQVPGVDAIMFG 241
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 24.3 bits (53), Expect = 3.8
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 41 RCILAEQFIRTRAGDRF 57
R +A + AG
Sbjct: 94 RSQIASALLSHYAGSSV 110
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 24.5 bits (53), Expect = 3.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 10 KSLYKKVDDIDLIVGG 25
+ +KV+DID+IV G
Sbjct: 210 IEIAQKVNDIDVIVTG 225
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase;
1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A
1z2e_A 2ipa_B
Length = 139
Score = 24.1 bits (53), Expect = 3.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 41 RCILAEQFIRTRAGDRF 57
R +AE + + GD +
Sbjct: 16 RSQMAEGWAKQYLGDEW 32
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid,
oxidoreductase; 1.12A {Staphylococcus aureus} SCOP:
c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A
1ljl_A 2cd7_A 1lk0_A
Length = 131
Score = 24.1 bits (53), Expect = 4.3
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 41 RCILAEQFIRTRAGDRF 57
R +AE + + G+ +
Sbjct: 16 RSQMAEGWGKEILGEGW 32
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI;
1.75A {Escherichia coli O157}
Length = 376
Score = 24.3 bits (53), Expect = 4.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 5 TIAKLKSLYKKVDDIDLIVGG 25
+K +K ID I+GG
Sbjct: 58 NAEIIKGFFKNDMPIDGIIGG 78
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase;
NMR {Synechocystis} PDB: 2l18_A 2l19_A
Length = 134
Score = 23.3 bits (51), Expect = 7.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 41 RCILAEQFIRTRAGDRF 57
R +AE F +T +
Sbjct: 17 RSQMAEGFAKTLGAGKI 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.403
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,183,420
Number of extensions: 60548
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 22
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)