RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2219
         (75 letters)



>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score =  109 bits (273), Expect = 1e-30
 Identities = 18/69 (26%), Positives = 32/69 (46%)

Query: 3   KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
           K   A+LK+LY  +D ++L    + E  +  AI G T   + A   ++   G+       
Sbjct: 413 KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQY 472

Query: 63  GQPSSFTKQ 71
            +PS+F  +
Sbjct: 473 WKPSTFGGE 481


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score =  105 bits (263), Expect = 3e-29
 Identities = 14/69 (20%), Positives = 29/69 (42%)

Query: 3   KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
           K   A+L+ LY  +D ++   G + E     +I G +   + A   ++   G+       
Sbjct: 412 KEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEY 471

Query: 63  GQPSSFTKQ 71
            + S+F  +
Sbjct: 472 WKASTFGGE 480


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score =  103 bits (258), Expect = 2e-28
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 3   KSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFFYDNP 62
                KL   Y   ++ID+ +GG++E  +    VGP   CI+  QF + R GDRF+++N 
Sbjct: 450 LKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENE 509

Query: 63  GQPSSFTK 70
           G    F+ 
Sbjct: 510 G---VFSM 514


>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus
           [TaxId: 274]}
          Length = 116

 Score = 24.4 bits (53), Expect = 1.2
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 17  DDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDR 56
             +   V  I + A+ G +       +  E+  R R G+ 
Sbjct: 68  PFVKPTVEAILKAARTGEVGDGKIFVLPVEKVYRIRTGEE 107


>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain
           {Escherichia coli, HPII [TaxId: 562]}
          Length = 156

 Score = 23.5 bits (50), Expect = 3.1
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 21  LIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFF 58
                IA+  ++G +   +      ++ +   A  R +
Sbjct: 108 KATIKIADQGEEGIVEADSADGSFMDELLTLMAAHRVW 145


>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
           candidum [TaxId: 27317]}
          Length = 439

 Score = 23.2 bits (49), Expect = 4.3
 Identities = 8/42 (19%), Positives = 13/42 (30%)

Query: 17  DDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFIRTRAGDRFF 58
             I+ I+G        G              F+  + G+ FF
Sbjct: 385 PGIEPIIGQTTPRTVGGLDPLNQNETFTVPLFVIPKGGEYFF 426


>d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId:
          28095]}
          Length = 377

 Score = 23.1 bits (48), Expect = 4.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 2  AKSTIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIV 36
          A S  A+L +++ +      +VG +A VA+ G I+
Sbjct: 1  AASLAARLDAVFDQALRERRLVGAVAIVARHGEIL 35


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
           10891]}
          Length = 1264

 Score = 23.0 bits (49), Expect = 5.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 27  AEVAQDGAIVGPTFRCILAEQFIRTRAG 54
           A +A       P F+ I+  Q++  R G
Sbjct: 433 ARMAAQPRTWDPLFQAIMRSQYVTARGG 460


>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
           flavoprotein ETFP {Paracoccus denitrificans [TaxId:
           266]}
          Length = 246

 Score = 22.7 bits (48), Expect = 5.4
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 5   TIAKLKSLYKKVDDIDLIVGGIAEVAQDGAIVGPTFRCILAEQFI 49
            +AK+ +   + +  +LI+ G   +  D    G     IL     
Sbjct: 100 AVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQA 144


>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 21.9 bits (47), Expect = 7.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 4  STIAKLKSLYKKVDDIDLIVGGIA-----EVAQDGAIVGPTF-RCI 43
           T+A ++ + K   D DLI+  +      +V + G  V P+  RCI
Sbjct: 43 WTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCI 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,998
Number of extensions: 10870
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 12
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)