Query psy222
Match_columns 225
No_of_seqs 240 out of 2537
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:14:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0113|consensus 99.9 6.6E-24 1.4E-28 172.3 13.9 166 42-208 53-220 (335)
2 PLN03134 glycine-rich RNA-bind 99.9 6.7E-22 1.4E-26 150.2 15.5 87 86-172 30-116 (144)
3 TIGR01659 sex-lethal sex-letha 99.9 4.6E-21 9.9E-26 164.9 14.6 84 89-172 192-277 (346)
4 KOG0121|consensus 99.8 3.8E-18 8.3E-23 123.0 8.0 82 87-168 33-114 (153)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.5E-17 3.3E-22 143.9 11.9 84 88-171 267-350 (352)
6 KOG0105|consensus 99.7 2.5E-17 5.5E-22 125.9 10.1 79 88-169 4-82 (241)
7 TIGR01659 sex-lethal sex-letha 99.7 3.5E-17 7.5E-22 140.9 11.2 85 85-169 102-186 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.8E-17 1E-21 140.8 11.2 83 89-171 2-84 (352)
9 PF00076 RRM_1: RNA recognitio 99.7 1E-16 2.2E-21 106.3 9.5 70 93-163 1-70 (70)
10 KOG0122|consensus 99.7 7.6E-17 1.7E-21 128.2 10.3 85 86-170 185-269 (270)
11 KOG0107|consensus 99.7 3.5E-16 7.6E-21 118.7 12.6 80 88-172 8-87 (195)
12 KOG4207|consensus 99.7 1.4E-16 2.9E-21 123.9 10.3 84 87-170 10-93 (256)
13 KOG0149|consensus 99.7 1.8E-16 4E-21 125.5 7.4 79 90-169 12-90 (247)
14 TIGR01645 half-pint poly-U bin 99.7 5.3E-16 1.2E-20 140.8 10.3 89 89-177 203-291 (612)
15 TIGR01648 hnRNP-R-Q heterogene 99.7 2.8E-15 6E-20 135.9 14.9 78 88-173 231-310 (578)
16 PF14259 RRM_6: RNA recognitio 99.6 3.2E-15 7E-20 99.5 9.3 70 93-163 1-70 (70)
17 KOG0125|consensus 99.6 1.1E-15 2.4E-20 126.1 8.3 86 85-172 91-176 (376)
18 PLN03120 nucleic acid binding 99.6 3.7E-15 8.1E-20 121.5 11.0 77 90-170 4-80 (260)
19 TIGR01622 SF-CC1 splicing fact 99.6 1.3E-15 2.8E-20 136.4 7.8 81 89-169 185-265 (457)
20 TIGR01645 half-pint poly-U bin 99.6 3E-15 6.6E-20 136.0 9.9 81 88-168 105-185 (612)
21 KOG0130|consensus 99.6 8.7E-15 1.9E-19 106.7 8.9 92 80-171 62-153 (170)
22 PLN03213 repressor of silencin 99.6 5.9E-15 1.3E-19 127.7 9.3 78 88-169 8-87 (759)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.7E-14 3.7E-19 130.7 11.3 82 88-169 293-374 (509)
24 KOG0148|consensus 99.6 1.4E-14 3.1E-19 116.8 9.5 81 85-171 159-239 (321)
25 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-14 3.6E-19 132.4 10.7 78 92-169 2-79 (562)
26 PLN03121 nucleic acid binding 99.6 3E-14 6.6E-19 114.5 10.2 77 89-169 4-80 (243)
27 KOG0148|consensus 99.5 1.2E-14 2.6E-19 117.3 7.3 82 90-171 62-143 (321)
28 TIGR01622 SF-CC1 splicing fact 99.5 3.9E-14 8.5E-19 126.8 11.5 84 85-169 84-167 (457)
29 TIGR01628 PABP-1234 polyadenyl 99.5 4.4E-14 9.5E-19 129.6 11.9 83 87-170 282-364 (562)
30 KOG0126|consensus 99.5 8.4E-16 1.8E-20 117.3 0.2 85 87-171 32-116 (219)
31 smart00362 RRM_2 RNA recogniti 99.5 6.2E-14 1.4E-18 92.2 9.3 72 92-165 1-72 (72)
32 KOG0117|consensus 99.5 4.5E-14 9.8E-19 120.8 10.1 77 89-173 258-334 (506)
33 TIGR01648 hnRNP-R-Q heterogene 99.5 3.7E-14 8E-19 128.6 10.1 79 88-167 56-135 (578)
34 KOG0415|consensus 99.5 2.4E-14 5.1E-19 119.4 7.1 109 67-176 217-325 (479)
35 COG0724 RNA-binding proteins ( 99.5 1E-13 2.2E-18 114.0 10.2 79 90-168 115-193 (306)
36 KOG0131|consensus 99.5 3.5E-14 7.6E-19 108.5 6.4 82 87-168 6-87 (203)
37 smart00360 RRM RNA recognition 99.5 1.6E-13 3.5E-18 89.9 8.7 71 95-165 1-71 (71)
38 KOG0145|consensus 99.5 8.9E-14 1.9E-18 111.8 8.6 85 87-171 38-122 (360)
39 KOG0116|consensus 99.5 3.3E-13 7.2E-18 117.7 12.6 87 88-175 286-372 (419)
40 KOG0117|consensus 99.5 1.4E-13 3E-18 117.8 9.8 83 87-169 80-163 (506)
41 KOG0111|consensus 99.5 3E-14 6.4E-19 112.0 4.6 85 88-172 8-92 (298)
42 KOG0144|consensus 99.5 1.2E-13 2.7E-18 117.7 8.4 84 87-170 31-117 (510)
43 KOG0108|consensus 99.5 1.3E-13 2.9E-18 120.8 8.6 82 91-172 19-100 (435)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.3E-13 7.2E-18 121.6 11.2 79 87-170 272-351 (481)
45 cd00590 RRM RRM (RNA recogniti 99.5 1E-12 2.2E-17 86.8 10.1 74 92-166 1-74 (74)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.3E-13 9.3E-18 120.9 10.3 75 89-169 1-77 (481)
47 KOG0114|consensus 99.4 1.2E-12 2.6E-17 91.3 9.6 82 85-169 13-94 (124)
48 KOG4212|consensus 99.4 1.5E-12 3.2E-17 111.4 11.5 79 90-169 44-123 (608)
49 KOG0144|consensus 99.4 2.1E-13 4.5E-18 116.4 5.7 84 89-173 123-209 (510)
50 KOG0127|consensus 99.4 6.9E-13 1.5E-17 116.1 9.0 85 87-172 114-198 (678)
51 KOG0127|consensus 99.4 1.7E-12 3.8E-17 113.7 9.2 86 86-171 288-379 (678)
52 KOG0145|consensus 99.4 4.2E-12 9.2E-17 102.2 9.8 82 89-170 277-358 (360)
53 KOG0146|consensus 99.4 1.1E-12 2.3E-17 106.0 5.9 89 85-173 280-368 (371)
54 PF13893 RRM_5: RNA recognitio 99.3 7.5E-12 1.6E-16 79.6 8.2 56 107-167 1-56 (56)
55 smart00361 RRM_1 RNA recogniti 99.3 5.9E-12 1.3E-16 83.9 7.9 61 104-164 2-69 (70)
56 KOG0124|consensus 99.3 9.6E-13 2.1E-17 110.4 4.5 78 90-167 113-190 (544)
57 KOG0109|consensus 99.3 2.6E-12 5.7E-17 104.8 6.0 73 91-171 3-75 (346)
58 KOG4208|consensus 99.3 1.1E-11 2.5E-16 96.6 8.6 84 87-170 46-130 (214)
59 KOG0147|consensus 99.3 1E-11 2.2E-16 109.0 7.6 86 87-172 275-360 (549)
60 KOG0131|consensus 99.2 1.8E-11 3.8E-16 93.8 6.8 85 87-171 93-178 (203)
61 KOG4205|consensus 99.2 2E-11 4.4E-16 102.9 7.9 113 56-174 68-180 (311)
62 KOG0109|consensus 99.2 3E-11 6.4E-16 98.7 6.1 78 87-172 75-152 (346)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.4E-11 1.6E-15 107.0 8.7 76 86-168 171-258 (509)
64 KOG0132|consensus 99.2 2.3E-10 4.9E-15 104.1 10.9 82 85-172 416-497 (894)
65 KOG0123|consensus 99.2 1.2E-10 2.6E-15 101.2 8.8 77 93-172 79-155 (369)
66 KOG4206|consensus 99.2 1.5E-10 3.4E-15 91.6 8.5 80 88-170 7-90 (221)
67 KOG4205|consensus 99.1 5.8E-11 1.3E-15 100.2 5.4 83 89-172 5-87 (311)
68 KOG0110|consensus 99.1 5.8E-11 1.2E-15 107.0 3.0 83 87-169 610-692 (725)
69 KOG0146|consensus 99.1 2.1E-10 4.6E-15 92.8 5.7 83 89-172 18-103 (371)
70 KOG4212|consensus 99.1 3.7E-10 8E-15 96.9 7.2 77 86-167 532-608 (608)
71 KOG0533|consensus 99.0 4.8E-09 1E-13 85.4 12.9 82 89-171 82-163 (243)
72 KOG0153|consensus 99.0 1.4E-09 3.1E-14 90.9 9.8 78 86-169 224-302 (377)
73 KOG4661|consensus 99.0 2.5E-09 5.5E-14 94.6 11.5 83 87-169 402-484 (940)
74 KOG0124|consensus 99.0 8.6E-10 1.9E-14 92.8 7.0 81 89-169 209-289 (544)
75 KOG4209|consensus 99.0 3.4E-09 7.3E-14 86.3 9.6 85 85-170 96-180 (231)
76 KOG0123|consensus 99.0 1.9E-09 4E-14 93.8 8.4 74 91-170 2-75 (369)
77 KOG0110|consensus 99.0 1.8E-09 3.9E-14 97.6 8.1 76 93-168 518-596 (725)
78 KOG0106|consensus 98.9 1.8E-09 3.9E-14 86.2 5.2 71 91-169 2-72 (216)
79 KOG1548|consensus 98.9 5.7E-09 1.2E-13 87.3 8.1 79 90-169 134-220 (382)
80 KOG1995|consensus 98.8 2.2E-08 4.8E-13 84.3 9.2 89 87-175 63-159 (351)
81 KOG4454|consensus 98.8 2.4E-09 5.2E-14 84.5 2.5 80 88-169 7-86 (267)
82 PF04059 RRM_2: RNA recognitio 98.8 1E-07 2.2E-12 67.1 9.3 79 91-169 2-86 (97)
83 KOG1457|consensus 98.7 9.6E-08 2.1E-12 75.8 9.9 85 87-171 31-119 (284)
84 KOG0226|consensus 98.7 1.7E-08 3.6E-13 81.4 4.9 85 85-169 185-269 (290)
85 KOG0151|consensus 98.7 3.9E-08 8.4E-13 89.1 6.8 85 87-171 171-258 (877)
86 KOG4211|consensus 98.6 1.4E-07 3E-12 82.5 8.8 78 88-169 8-85 (510)
87 KOG4660|consensus 98.6 5.5E-08 1.2E-12 86.0 3.9 72 87-163 72-143 (549)
88 KOG4210|consensus 98.4 3.6E-07 7.9E-12 76.8 4.8 86 86-172 180-266 (285)
89 KOG0120|consensus 98.4 3E-07 6.5E-12 81.8 4.0 85 85-169 284-368 (500)
90 KOG4849|consensus 98.3 2.1E-06 4.6E-11 72.3 8.0 79 87-165 77-157 (498)
91 KOG0147|consensus 98.3 2.2E-07 4.7E-12 82.2 2.0 84 85-169 174-257 (549)
92 KOG1190|consensus 98.3 3.9E-06 8.4E-11 72.1 8.3 77 90-171 297-374 (492)
93 PF11608 Limkain-b1: Limkain b 98.1 1.1E-05 2.5E-10 54.5 6.7 67 92-168 4-75 (90)
94 KOG1457|consensus 98.1 2.5E-06 5.4E-11 67.9 4.0 69 85-157 205-273 (284)
95 KOG4206|consensus 98.1 1.8E-05 4E-10 63.0 7.7 79 85-168 141-220 (221)
96 KOG4211|consensus 98.0 1.5E-05 3.3E-10 70.0 7.4 79 88-168 101-180 (510)
97 PF08777 RRM_3: RNA binding mo 98.0 1.6E-05 3.6E-10 57.0 6.0 71 91-167 2-77 (105)
98 KOG3152|consensus 98.0 1.4E-05 3E-10 64.8 6.1 73 89-161 73-157 (278)
99 KOG0106|consensus 98.0 4E-06 8.6E-11 67.2 2.8 71 87-165 96-166 (216)
100 KOG0105|consensus 97.8 0.00028 6E-09 54.9 9.9 66 87-159 112-177 (241)
101 KOG1456|consensus 97.8 0.00089 1.9E-08 57.3 13.5 81 85-170 115-199 (494)
102 COG5175 MOT2 Transcriptional r 97.7 8.2E-05 1.8E-09 62.7 6.5 81 89-169 113-202 (480)
103 KOG1190|consensus 97.6 0.00016 3.4E-09 62.4 6.9 79 87-169 411-490 (492)
104 KOG0129|consensus 97.6 0.00017 3.8E-09 63.8 7.2 67 85-151 365-432 (520)
105 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.7E-09 45.0 5.1 52 91-149 2-53 (53)
106 KOG4307|consensus 97.6 0.00026 5.7E-09 64.8 8.0 79 88-166 864-943 (944)
107 KOG1548|consensus 97.5 0.00036 7.8E-09 59.0 7.5 81 85-169 260-351 (382)
108 KOG0120|consensus 97.5 0.00032 6.9E-09 62.8 7.3 63 106-168 425-490 (500)
109 KOG2416|consensus 97.4 0.00045 9.7E-09 62.2 7.4 83 81-169 435-521 (718)
110 KOG1456|consensus 97.4 0.0014 3E-08 56.2 9.5 81 85-170 282-363 (494)
111 KOG0129|consensus 97.4 0.00065 1.4E-08 60.3 7.7 66 87-153 256-327 (520)
112 KOG2314|consensus 97.4 0.0015 3.3E-08 58.7 9.9 79 89-168 57-142 (698)
113 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0014 3E-08 46.4 6.7 77 90-168 6-90 (100)
114 PF08952 DUF1866: Domain of un 97.2 0.0022 4.7E-08 48.3 7.9 74 87-169 24-106 (146)
115 KOG1855|consensus 97.1 0.00062 1.3E-08 59.1 4.5 68 87-154 228-308 (484)
116 KOG1365|consensus 97.1 0.00094 2E-08 57.3 5.2 79 89-168 279-360 (508)
117 KOG1365|consensus 96.9 0.00084 1.8E-08 57.6 3.5 73 91-165 162-238 (508)
118 KOG4676|consensus 96.9 0.0013 2.7E-08 56.7 4.4 77 91-168 8-87 (479)
119 KOG0112|consensus 96.9 0.0012 2.5E-08 62.2 4.5 78 86-169 451-530 (975)
120 KOG2202|consensus 96.9 0.00057 1.2E-08 55.7 2.1 62 106-168 84-146 (260)
121 KOG1996|consensus 96.9 0.0036 7.8E-08 52.0 6.8 65 104-168 300-365 (378)
122 KOG0128|consensus 96.8 0.00094 2E-08 62.5 3.4 79 90-169 736-814 (881)
123 KOG2193|consensus 96.7 0.0016 3.5E-08 56.6 4.0 74 91-170 2-76 (584)
124 PF10309 DUF2414: Protein of u 96.7 0.011 2.4E-07 37.9 6.7 54 91-152 6-62 (62)
125 KOG4307|consensus 96.7 0.0014 2.9E-08 60.3 3.4 82 85-167 429-511 (944)
126 KOG0128|consensus 96.6 0.00014 3.1E-09 67.8 -3.9 70 88-157 665-734 (881)
127 PF08675 RNA_bind: RNA binding 96.5 0.012 2.5E-07 40.0 6.0 55 91-154 10-64 (87)
128 PRK11634 ATP-dependent RNA hel 96.4 0.083 1.8E-06 49.6 13.0 69 92-169 488-562 (629)
129 KOG0112|consensus 96.0 0.0021 4.5E-08 60.6 0.4 83 85-168 367-449 (975)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.014 3E-07 45.8 4.7 81 89-169 6-97 (176)
131 KOG0115|consensus 95.9 0.012 2.6E-07 48.1 4.2 65 91-156 32-96 (275)
132 KOG2253|consensus 95.9 0.0069 1.5E-07 55.5 3.1 76 83-167 33-108 (668)
133 KOG2068|consensus 95.9 0.0034 7.5E-08 53.1 1.1 79 90-169 77-162 (327)
134 PF07576 BRAP2: BRCA1-associat 95.3 0.25 5.5E-06 35.6 9.0 68 90-159 13-81 (110)
135 PF15023 DUF4523: Protein of u 95.3 0.13 2.7E-06 38.7 7.4 74 87-168 83-160 (166)
136 PF03880 DbpA: DbpA RNA bindin 94.9 0.15 3.3E-06 33.8 6.6 67 92-167 2-74 (74)
137 KOG2591|consensus 94.5 0.072 1.6E-06 48.2 5.2 71 87-164 172-246 (684)
138 KOG4210|consensus 94.2 0.037 8E-07 46.7 2.8 84 88-171 86-169 (285)
139 KOG4660|consensus 94.2 0.083 1.8E-06 47.7 4.9 81 88-168 386-471 (549)
140 KOG2135|consensus 93.9 0.037 7.9E-07 49.0 2.1 73 90-169 372-445 (526)
141 KOG4285|consensus 93.6 0.27 5.8E-06 41.4 6.6 71 92-170 199-270 (350)
142 PF04847 Calcipressin: Calcipr 93.6 0.2 4.4E-06 39.5 5.7 60 104-169 9-70 (184)
143 KOG4574|consensus 92.0 0.14 2.9E-06 48.6 3.0 74 91-170 299-374 (1007)
144 PF11767 SET_assoc: Histone ly 91.9 0.86 1.9E-05 29.7 5.9 55 101-164 11-65 (66)
145 KOG2193|consensus 89.8 0.034 7.5E-07 48.6 -2.7 76 89-168 79-155 (584)
146 KOG0804|consensus 89.5 1.4 3E-05 39.2 6.8 68 90-159 74-142 (493)
147 KOG2318|consensus 87.5 3.8 8.2E-05 37.7 8.3 83 85-167 169-303 (650)
148 KOG4676|consensus 87.3 0.076 1.7E-06 46.0 -2.2 72 91-167 152-223 (479)
149 KOG4410|consensus 82.7 5 0.00011 33.7 6.4 58 89-152 329-394 (396)
150 smart00596 PRE_C2HC PRE_C2HC d 78.2 4.5 9.7E-05 26.5 3.8 62 105-169 2-64 (69)
151 PF07530 PRE_C2HC: Associated 77.6 5.8 0.00013 25.9 4.3 62 105-169 2-64 (68)
152 KOG4483|consensus 75.4 9.8 0.00021 33.5 6.2 60 85-151 386-446 (528)
153 KOG4454|consensus 68.8 1.1 2.3E-05 36.3 -1.0 70 90-160 80-153 (267)
154 PF03468 XS: XS domain; Inter 67.4 18 0.00038 26.3 5.2 56 92-150 10-75 (116)
155 COG0724 RNA-binding proteins ( 63.5 9 0.00019 30.6 3.5 65 85-149 220-284 (306)
156 KOG4019|consensus 58.1 9.9 0.00021 29.8 2.6 73 91-169 11-89 (193)
157 KOG2295|consensus 56.7 1.7 3.8E-05 39.6 -1.9 73 89-161 230-302 (648)
158 PF10567 Nab6_mRNP_bdg: RNA-re 50.1 42 0.00091 28.5 5.2 82 87-168 12-106 (309)
159 COG5638 Uncharacterized conser 47.6 1.3E+02 0.0028 26.9 8.0 38 86-123 142-184 (622)
160 KOG2891|consensus 47.3 31 0.00067 29.1 4.0 37 88-124 147-195 (445)
161 PF15513 DUF4651: Domain of un 46.6 54 0.0012 21.0 4.2 18 105-122 9-26 (62)
162 PF09707 Cas_Cas2CT1978: CRISP 46.2 48 0.0011 22.7 4.2 47 91-140 26-72 (86)
163 KOG4008|consensus 46.1 20 0.00042 29.4 2.6 35 85-119 35-69 (261)
164 PRK10590 ATP-dependent RNA hel 43.3 1.5E+02 0.0032 26.6 8.2 7 132-138 342-348 (456)
165 PF02714 DUF221: Domain of unk 42.6 36 0.00078 28.9 4.0 39 135-175 1-39 (325)
166 COG3254 Uncharacterized conser 42.5 96 0.0021 22.1 5.3 43 104-149 26-68 (105)
167 PRK14548 50S ribosomal protein 42.4 1.1E+02 0.0023 20.8 5.8 56 93-151 23-80 (84)
168 PRK11558 putative ssRNA endonu 39.7 54 0.0012 23.0 3.7 48 91-141 28-75 (97)
169 KOG1295|consensus 39.6 30 0.00066 30.3 3.0 70 90-159 7-79 (376)
170 KOG4365|consensus 38.0 6.1 0.00013 35.2 -1.5 77 92-169 5-81 (572)
171 KOG3973|consensus 37.0 75 0.0016 27.7 4.8 6 103-108 199-204 (465)
172 PRK11901 hypothetical protein; 33.8 1.1E+02 0.0023 26.5 5.3 60 91-155 246-307 (327)
173 PF11823 DUF3343: Protein of u 33.1 65 0.0014 20.9 3.2 26 134-159 3-28 (73)
174 COG0030 KsgA Dimethyladenosine 32.0 62 0.0013 27.0 3.6 35 90-124 95-129 (259)
175 COG0150 PurM Phosphoribosylami 31.5 17 0.00036 31.5 0.1 48 104-155 275-322 (345)
176 COG5193 LHP1 La protein, small 31.4 21 0.00045 31.5 0.7 60 90-149 174-243 (438)
177 KOG3702|consensus 30.3 25 0.00055 33.0 1.1 71 92-163 513-583 (681)
178 COG4907 Predicted membrane pro 27.9 57 0.0012 29.6 2.8 12 143-154 526-537 (595)
179 PF07292 NID: Nmi/IFP 35 domai 26.3 35 0.00075 23.5 1.0 25 87-111 49-73 (88)
180 PRK11230 glycolate oxidase sub 25.9 3.6E+02 0.0077 24.8 7.7 49 104-153 203-255 (499)
181 PF13689 DUF4154: Domain of un 25.2 1.4E+02 0.0031 22.1 4.3 59 104-167 2-60 (145)
182 KOG3262|consensus 25.1 1.7E+02 0.0038 23.1 4.7 7 91-97 81-87 (215)
183 KOG0116|consensus 24.5 1.3E+02 0.0028 27.0 4.5 9 142-150 302-310 (419)
184 PF04026 SpoVG: SpoVG; InterP 24.4 1.7E+02 0.0038 19.8 4.1 26 116-141 2-27 (84)
185 TIGR01873 cas_CT1978 CRISPR-as 24.0 76 0.0016 21.8 2.3 48 91-141 26-74 (87)
186 PF03439 Spt5-NGN: Early trans 24.0 1.4E+02 0.0031 19.9 3.7 24 131-154 43-66 (84)
187 PF11411 DNA_ligase_IV: DNA li 22.3 75 0.0016 18.0 1.7 16 100-115 19-34 (36)
188 PRK13259 regulatory protein Sp 21.1 2E+02 0.0044 20.0 3.9 26 116-141 2-27 (94)
189 KOG4213|consensus 20.2 1.3E+02 0.0029 23.7 3.2 56 91-151 112-169 (205)
190 PF00398 RrnaAD: Ribosomal RNA 20.0 97 0.0021 25.6 2.7 23 90-112 97-119 (262)
No 1
>KOG0113|consensus
Probab=99.91 E-value=6.6e-24 Score=172.34 Aligned_cols=166 Identities=40% Similarity=0.708 Sum_probs=138.8
Q ss_pred CCCccccccccCccccCCCCCcccCcccHHHHHHHhccCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEE
Q psy222 42 VKYWYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHT-SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV 120 (225)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v 120 (225)
+..+.+++...++++...++..+..++. ...+.+..+..... ...++-+||||+.|+++++|..|+..|+.||.|..|
T Consensus 53 ~p~~~p~~t~~e~~er~~~~k~e~~~~~-~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikri 131 (335)
T KOG0113|consen 53 APPKFPVETPEEPLERGRREKTEKIPHK-LERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRI 131 (335)
T ss_pred CCCcCcccchhhHHHhhhhhhhhhhHHH-HHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeE
Confidence 3456777777777777777766666664 33333333222222 566889999999999999999999999999999999
Q ss_pred EEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q psy222 121 RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVLPGWKPRRLGGGWGGNR-NSGQLRFGGRN 199 (225)
Q Consensus 121 ~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~r~~gg~gg~~-~~g~~~~gg~~ 199 (225)
.|++++.||+++|||||+|.++.++.+|.+..+|..|+|+.|.|++-..+..++|.|++.+||.||.+ ..+...++++.
T Consensus 132 rlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~PRRLGGGLGg~r~~~~~~~~~~R~ 211 (335)
T KOG0113|consen 132 RLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLPRRLGGGLGGRRYESRQLRFGGRE 211 (335)
T ss_pred EEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccccccccccccccCCcCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 45666788888
Q ss_pred CCCCCCccC
Q psy222 200 KPWVKPVQL 208 (225)
Q Consensus 200 ~~~~~p~~~ 208 (225)
+++..|...
T Consensus 212 R~~~s~~~g 220 (335)
T KOG0113|consen 212 RPFRSPLNG 220 (335)
T ss_pred ccccCCCCC
Confidence 887777654
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=6.7e-22 Score=150.20 Aligned_cols=87 Identities=32% Similarity=0.521 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....++|||+|||+.++|++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=4.6e-21 Score=164.85 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG--SEIIVDF 166 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~ 166 (225)
...+|||+|||+.++|++|+++|++||.|+.|.|++++.+++.++||||+|.+.++|++||+.||+..|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999999899999999999999999999999999999876 6899999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 887543
No 4
>KOG0121|consensus
Probab=99.75 E-value=3.8e-18 Score=123.02 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
...+++|||+||++.++|++|.++|+.+|.|..|.+-.|+.+..++|||||+|.+.++|+.|++.+++..|++++|+|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy222 167 EC 168 (225)
Q Consensus 167 a~ 168 (225)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 65
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.5e-17 Score=143.88 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
..+.+|||+|||+.+++++|+++|++||.|..|+|+++..++.++|||||+|.+.++|.+||..|||..|+|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34557999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8764
No 6
>KOG0105|consensus
Probab=99.73 E-value=2.5e-17 Score=125.95 Aligned_cols=79 Identities=22% Similarity=0.517 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||.++.+.+|+++|-+||.|..|.|... .....||||+|++..+|+.||..-+|..++|+.|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999988643 224679999999999999999999999999999999998
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
+.
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 75
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.5e-17 Score=140.90 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
......++|||+|||+++++++|+++|+.||.|+.|+|+.+..+++++|||||+|.++++|++||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98864
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=4.8e-17 Score=140.76 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+..+|||+|||+.+++++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 644
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=1e-16 Score=106.29 Aligned_cols=70 Identities=33% Similarity=0.691 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 93 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
|||+|||+.+++++|+++|++||.|..+.+..+ .++..++||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5888999999999999999999999999999999885
No 10
>KOG0122|consensus
Probab=99.71 E-value=7.6e-17 Score=128.16 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|-|.||+.+++|++|+++|..||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99885
No 11
>KOG0107|consensus
Probab=99.70 E-value=3.5e-16 Score=118.68 Aligned_cols=80 Identities=29% Similarity=0.573 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.-.++|||+||+..+++.+|+.+|..||.|..|.|... +.|||||+|++..+|+.|+..|+|..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34679999999999999999999999999999998865 4899999999999999999999999999999999999
Q ss_pred eCCCC
Q psy222 168 CGRVL 172 (225)
Q Consensus 168 ~~~~~ 172 (225)
+.+..
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87654
No 12
>KOG4207|consensus
Probab=99.70 E-value=1.4e-16 Score=123.91 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.....+|-|-||.+.++.++|+.+|++||.|-+|.|++|+.|...+|||||.|....+|+.|+++|+|..|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q psy222 167 ECGR 170 (225)
Q Consensus 167 a~~~ 170 (225)
|+-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 9853
No 13
>KOG0149|consensus
Probab=99.66 E-value=1.8e-16 Score=125.50 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
-.+||||+|+|++..+.|+++|++||+|+++.|+.|+.++++|||+||+|.+.+.|++|++. ..-.|+||+..+.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 36899999999999999999999999999999999999999999999999999999999985 45679999999998763
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=5.3e-16 Score=140.84 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=82.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
..++|||+||++++++++|+++|+.||.|..|+|++++.+++.+|||||+|.+.++|.+||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCCCCCCC
Q psy222 169 GRVLPGWKP 177 (225)
Q Consensus 169 ~~~~~~~~~ 177 (225)
..+...+.+
T Consensus 283 ~pP~~~~~p 291 (612)
T TIGR01645 283 TPPDALLQP 291 (612)
T ss_pred CCccccCCC
Confidence 765555543
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=2.8e-15 Score=135.89 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC--CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEY--GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...++|||+||++.+++++|+++|++| |.|+.|.++ ++||||+|.+.++|++||+.||+..|+|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 999999876 4599999999999999999999999999999999
Q ss_pred EeeCCCCC
Q psy222 166 FECGRVLP 173 (225)
Q Consensus 166 ~a~~~~~~ 173 (225)
++++....
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99986544
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=3.2e-15 Score=99.47 Aligned_cols=70 Identities=27% Similarity=0.575 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 93 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
|||+|||+.+++++|+++|..||.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999999874
No 17
>KOG0125|consensus
Probab=99.62 E-value=1.1e-15 Score=126.08 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
..+...++|||.|||+...|.||+.+|.+||.|++|.|+.+ ..-+|||+||+|++.++|++|-++|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 44556689999999999999999999999999999999987 3457999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
..|..|..
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987654
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.7e-15 Score=121.47 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .++||||+|.++++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998853 46899999999999999996 999999999999999875
Q ss_pred C
Q psy222 170 R 170 (225)
Q Consensus 170 ~ 170 (225)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=1.3e-15 Score=136.36 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+++.+|||||+|.+.++|.+||..|+|..|.|+.|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999999976
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3e-15 Score=135.95 Aligned_cols=81 Identities=26% Similarity=0.459 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+||++.+++++|+++|.+||.|.+|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred e
Q psy222 168 C 168 (225)
Q Consensus 168 ~ 168 (225)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 21
>KOG0130|consensus
Probab=99.59 E-value=8.7e-15 Score=106.66 Aligned_cols=92 Identities=27% Similarity=0.463 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 80 YKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
..|.++..-.+..|||.++...++|++|...|..||.|..|+|..|+.||-.+|||+|+|.+.+.|++|+..||+..|.+
T Consensus 62 ~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 62 MRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 34555667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeeCCC
Q psy222 160 SEIIVDFECGRV 171 (225)
Q Consensus 160 ~~l~V~~a~~~~ 171 (225)
+.|.|.|+.-+.
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 999999998654
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=5.9e-15 Score=127.69 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCH--HHHHHHHHHhCCCccCCcEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE--KACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~--~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....+||||||++.+++++|+.+|..||.|..|.|++. +| +|||||+|... .++.+||..|||..|+|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34579999999999999999999999999999999944 66 99999999987 78999999999999999999999
Q ss_pred EeeC
Q psy222 166 FECG 169 (225)
Q Consensus 166 ~a~~ 169 (225)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9986
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=1.7e-14 Score=130.71 Aligned_cols=82 Identities=27% Similarity=0.467 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+.+++++|+++|..||.|..+.|+.+..++.++|||||+|.+.+.|..||..|++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 65
No 24
>KOG0148|consensus
Probab=99.57 E-value=1.4e-14 Score=116.84 Aligned_cols=81 Identities=21% Similarity=0.445 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
...++.++||||||+..++|++|++.|+.||.|.+|+|..+ +||+||.|.+.+.|..||..||+.+|.|+.+++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 66778899999999999999999999999999999999987 799999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.|-+...
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9987643
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.7e-14 Score=132.38 Aligned_cols=78 Identities=31% Similarity=0.537 Sum_probs=75.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
+|||+|||.+++|++|+++|++||.|..|+|+++..+++++|||||+|.+.++|++||..|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999998999999999999999999999999999999999999999753
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3e-14 Score=114.51 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.+.+|||+||++.+|+++|++||+.||.|.+|.|+++. ..++||||+|.+++.++.||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999999884 345799999999999999996 99999999999988765
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 27
>KOG0148|consensus
Probab=99.55 E-value=1.2e-14 Score=117.29 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=79.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
...|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|||.-|+.|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy222 170 RV 171 (225)
Q Consensus 170 ~~ 171 (225)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=3.9e-14 Score=126.76 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||. |++..|.|+.|.|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 344567899999999999999999999999999999999999899999999999999999999998 8999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.++..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 88653
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=4.4e-14 Score=129.62 Aligned_cols=83 Identities=19% Similarity=0.416 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.....+|||+||++.+++++|+++|++||.|.+|+|+.+ .++.++|||||+|.+.++|.+||..||+..|.|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 456678999999999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred eeCC
Q psy222 167 ECGR 170 (225)
Q Consensus 167 a~~~ 170 (225)
+..+
T Consensus 361 a~~k 364 (562)
T TIGR01628 361 AQRK 364 (562)
T ss_pred ccCc
Confidence 9864
No 30
>KOG0126|consensus
Probab=99.54 E-value=8.4e-16 Score=117.30 Aligned_cols=85 Identities=28% Similarity=0.502 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
-.++.-|||||||+..||.+|..+|++||+|+.|.|++|+.||+++||||+.|++-.+---|+.-|||..|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 44667899999999999999999999999999999999999999999999999998888888999999999999999998
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
.....
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65433
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=6.2e-14 Score=92.22 Aligned_cols=72 Identities=36% Similarity=0.677 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
+|||.|||..+++++|+++|.+||.|..+.+..+. +..+++|||+|.+.+.|+.|+..|++..|.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 6778999999999999999999999999999998873
No 32
>KOG0117|consensus
Probab=99.53 E-value=4.5e-14 Score=120.83 Aligned_cols=77 Identities=26% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.-+.|||.||+.++||+.|+++|.+||.|+.|+.++| ||||.|.+.++|.+|++.||++.|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3478999999999999999999999999999998855 99999999999999999999999999999999999
Q ss_pred CCCCC
Q psy222 169 GRVLP 173 (225)
Q Consensus 169 ~~~~~ 173 (225)
+....
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 85543
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=3.7e-14 Score=128.61 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSEIIVDF 166 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~~ 166 (225)
...++|||+|||++++|++|+++|++||.|..|+|++| .+++++|||||+|.+.++|++||+.||+..|. ++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 69999999999999999999999999998885 66666654
Q ss_pred e
Q psy222 167 E 167 (225)
Q Consensus 167 a 167 (225)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 34
>KOG0415|consensus
Probab=99.52 E-value=2.4e-14 Score=119.44 Aligned_cols=109 Identities=27% Similarity=0.505 Sum_probs=94.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHH
Q psy222 67 PHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACL 146 (225)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~ 146 (225)
++..++..++..+ .|.....+|.+.|||-.|.+.++.++|.-+|+.||.|..|.|+++..||.+..||||+|.+.++|+
T Consensus 217 a~~~A~iLEmvGD-lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 217 AKAQAVILEMVGD-LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCE 295 (479)
T ss_pred HHhhHhHHHHhcC-CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHH
Confidence 3344455555555 345567888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCcEEEEEEeeCCCCCCCC
Q psy222 147 AAIRALNRQNFQGSEIIVDFECGRVLPGWK 176 (225)
Q Consensus 147 ~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~ 176 (225)
+|...|++..|+++.|+|.|++.-....|+
T Consensus 296 ~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r 325 (479)
T KOG0415|consen 296 QAYFKMDNVLIDDRRIHVDFSQSVSKVKYR 325 (479)
T ss_pred HHHhhhcceeeccceEEeehhhhhhhhhcc
Confidence 999999999999999999999865444444
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=1e-13 Score=114.02 Aligned_cols=79 Identities=35% Similarity=0.610 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.++|||+|||+.+++++|+++|..||.|..|.+..++.++..+|||||+|.+.++|..|+..|++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 36
>KOG0131|consensus
Probab=99.50 E-value=3.5e-14 Score=108.52 Aligned_cols=82 Identities=29% Similarity=0.468 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.....+|||+||+..++++.|.++|-+.|.|+.+++++++.+...+|||||+|.++++|+-|++.||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy222 167 EC 168 (225)
Q Consensus 167 a~ 168 (225)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.6e-13 Score=89.88 Aligned_cols=71 Identities=37% Similarity=0.659 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 95 IGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 95 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
|+|||..+++++|+.+|.+||.|..+.+..++.++.+++||||+|.+.++|..|+..|++..+.++.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999998873
No 38
>KOG0145|consensus
Probab=99.50 E-value=8.9e-14 Score=111.80 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.+....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
|++-.
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 99743
No 39
>KOG0116|consensus
Probab=99.49 E-value=3.3e-13 Score=117.68 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
....+|||.|||.++++.+|+++|..||.|+...|..-...++...|+||+|.+.+.++.||++ +-..|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3445699999999999999999999999999887765432344448999999999999999996 677899999999998
Q ss_pred eCCCCCCC
Q psy222 168 CGRVLPGW 175 (225)
Q Consensus 168 ~~~~~~~~ 175 (225)
++......
T Consensus 365 ~~~~~g~~ 372 (419)
T KOG0116|consen 365 RPGFRGNG 372 (419)
T ss_pred cccccccc
Confidence 87554433
No 40
>KOG0117|consensus
Probab=99.49 E-value=1.4e-13 Score=117.84 Aligned_cols=83 Identities=22% Similarity=0.426 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc-CCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF-QGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l-~g~~l~V~ 165 (225)
..-++.||||.||.++.|++|.-+|.+.|.|-+++|++|+.+|.++|||||.|.+.++|+.||+.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999988 57888888
Q ss_pred EeeC
Q psy222 166 FECG 169 (225)
Q Consensus 166 ~a~~ 169 (225)
.+..
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 7653
No 41
>KOG0111|consensus
Probab=99.48 E-value=3e-14 Score=111.95 Aligned_cols=85 Identities=25% Similarity=0.506 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++||||+|..+++|.-|...|-.||.|..|.++.|..+++.+||+||+|...++|.+||.-||+.+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q psy222 168 CGRVL 172 (225)
Q Consensus 168 ~~~~~ 172 (225)
+|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98443
No 42
>KOG0144|consensus
Probab=99.48 E-value=1.2e-13 Score=117.73 Aligned_cols=84 Identities=31% Similarity=0.574 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc-cCC--cEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN-FQG--SEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~-l~g--~~l~ 163 (225)
....-++||+-||..++|.+|+++|++||.|.+|.|++|+.|+..+|||||.|.+.++|.+|+.+||+.. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3555689999999999999999999999999999999999999999999999999999999999998864 555 6789
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|++|...
T Consensus 111 vk~Ad~E 117 (510)
T KOG0144|consen 111 VKYADGE 117 (510)
T ss_pred ecccchh
Confidence 9998753
No 43
>KOG0108|consensus
Probab=99.47 E-value=1.3e-13 Score=120.80 Aligned_cols=82 Identities=33% Similarity=0.558 Sum_probs=79.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
+.|||||||+++++++|..+|+..|.|..++++.|+.+|+.+||+|++|.+.++|+.|++.||+.++.|++|+|.|+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q psy222 171 VL 172 (225)
Q Consensus 171 ~~ 172 (225)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=3.3e-13 Score=121.59 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
..++++|||+||++ .+++++|+++|+.||.|..|+|+.++ +|||||+|.+.++|+.||..||+..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999874 6899999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98764
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=1e-12 Score=86.84 Aligned_cols=74 Identities=42% Similarity=0.697 Sum_probs=68.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
+|||+|||+.+++++|+++|..||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 6789999999999999999999999999999998864
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=4.3e-13 Score=120.89 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL--NRQNFQGSEIIVDF 166 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l--~g~~l~g~~l~V~~ 166 (225)
++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||..| ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999999854 579999999999999999864 77889999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 47
>KOG0114|consensus
Probab=99.44 E-value=1.2e-12 Score=91.32 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.+....+.|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|+..|+|..++++.|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 445567889999999999999999999999999999997654 45889999999999999999999999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
-+-.+
T Consensus 90 lyyq~ 94 (124)
T KOG0114|consen 90 LYYQP 94 (124)
T ss_pred EecCH
Confidence 88654
No 48
>KOG4212|consensus
Probab=99.43 E-value=1.5e-12 Score=111.43 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 90 TRTLFIGRLNKNSREADLEQAFA-EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.+.+||.|||+++.|.+|+++|. +.|+|+.|.|+.|. +++.+|||.|+|++++.+++|++.||.+.+.|+.|+|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999995 78999999999996 89999999999999999999999999999999999999876
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 5
No 49
>KOG0144|consensus
Probab=99.42 E-value=2.1e-13 Score=116.35 Aligned_cols=84 Identities=27% Similarity=0.547 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc-cCC--cEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN-FQG--SEIIVD 165 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~-l~g--~~l~V~ 165 (225)
..++|||+-|+..++|.+|+++|++||.|++|.|+++. .+.++|||||.|.+.+-|..||+.||+.. +.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 36789999999999999999999999999999999996 78999999999999999999999999974 555 589999
Q ss_pred EeeCCCCC
Q psy222 166 FECGRVLP 173 (225)
Q Consensus 166 ~a~~~~~~ 173 (225)
||.+...+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99875543
No 50
>KOG0127|consensus
Probab=99.42 E-value=6.9e-13 Score=116.14 Aligned_cols=85 Identities=22% Similarity=0.441 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+..+|+|.||||.|.+.+|+.+|+.||.|..|.|++.. .++.+|||||.|....+|..||+.||+..|+|++|-|+|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 4447799999999999999999999999999999999776 556669999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
|-++..
T Consensus 193 AV~Kd~ 198 (678)
T KOG0127|consen 193 AVDKDT 198 (678)
T ss_pred eccccc
Confidence 987553
No 51
>KOG0127|consensus
Probab=99.38 E-value=1.7e-12 Score=113.67 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh-----CC-CccCC
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL-----NR-QNFQG 159 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l-----~g-~~l~g 159 (225)
......+|||.|||+++++++|..+|++||.|..+.|+.++.|++++|.|||.|.+..+|+.||... .+ ..|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3455689999999999999999999999999999999999999999999999999999999999865 23 57899
Q ss_pred cEEEEEEeeCCC
Q psy222 160 SEIIVDFECGRV 171 (225)
Q Consensus 160 ~~l~V~~a~~~~ 171 (225)
+.|.|..|-.|.
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999999997653
No 52
>KOG0145|consensus
Probab=99.36 E-value=4.2e-12 Score=102.22 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
....|||=||.++++|.-|.++|.+||.|..|+|++|..|.++|||+||...+-++|..||..|||+.+.++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999976
Q ss_pred CC
Q psy222 169 GR 170 (225)
Q Consensus 169 ~~ 170 (225)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 53
>KOG0146|consensus
Probab=99.36 E-value=1.1e-12 Score=106.03 Aligned_cols=89 Identities=27% Similarity=0.382 Sum_probs=84.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
...+++|+|||=.||.++.+.+|..+|-.||.|.+.++..|+.|..+|.|+||.|.+..+++.||..|||..|+=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.+.+++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 999887643
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=7.5e-12 Score=79.57 Aligned_cols=56 Identities=23% Similarity=0.567 Sum_probs=50.9
Q ss_pred HHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 107 LEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 107 L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
|.++|++||.|..+.+..+. +++|||+|.+.++|.+|+..||+..|.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999986
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=5.9e-12 Score=83.91 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=55.1
Q ss_pred HHHHHHHHh----cCCceeEEE-EeecCCC--CccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 104 EADLEQAFA----EYGKVISVR-VVRDFVT--GHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 104 e~~L~~~F~----~~G~v~~v~-i~~~~~~--g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
+++|+++|. +||.|..|. |+.++.+ +..+||+||+|.+.++|.+|+..|||..|.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777656 889999999999999999999999999999999876
No 56
>KOG0124|consensus
Probab=99.33 E-value=9.6e-13 Score=110.38 Aligned_cols=78 Identities=27% Similarity=0.488 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
-|+||||.|.+++.|+.|+..|..||.|.+|.+-+|..|+++||||||+|+-++.|+-|++.||+..++|+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998743
No 57
>KOG0109|consensus
Probab=99.32 E-value=2.6e-12 Score=104.82 Aligned_cols=73 Identities=34% Similarity=0.599 Sum_probs=69.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
.+|||+|||..+++.+|+.+|++||.|++|.|+ |.|+||..++...++.||.-||+..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999998 559999999999999999999999999999999999876
Q ss_pred C
Q psy222 171 V 171 (225)
Q Consensus 171 ~ 171 (225)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 58
>KOG4208|consensus
Probab=99.30 E-value=1.1e-11 Score=96.64 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEY-GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....-+||..||.-+.+.+|..+|.+| |.|..+++-+++.||.++|||||+|.+++.|+.|.+.||++.|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445578999999999999999999988 778888888999999999999999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
+..+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97764
No 59
>KOG0147|consensus
Probab=99.27 E-value=1e-11 Score=108.98 Aligned_cols=86 Identities=33% Similarity=0.507 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+...|||+||..++++++|+.+|+.||.|..|.++.+..||..+||+||+|.+.++|.+|++.|||.+|-|+.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 34444599999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
-..+..
T Consensus 355 v~~r~~ 360 (549)
T KOG0147|consen 355 VTERVD 360 (549)
T ss_pred eeeecc
Confidence 776443
No 60
>KOG0131|consensus
Probab=99.25 E-value=1.8e-11 Score=93.83 Aligned_cols=85 Identities=32% Similarity=0.499 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEE-EEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV-RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.+|||+||.++++|..|.+.|+.||.+... +|+++..|+..++|+||.|.+.+.+.+|+..||++.+..++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 4455799999999999999999999999987654 889998899999999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++..+.
T Consensus 173 ya~k~~ 178 (203)
T KOG0131|consen 173 YAFKKD 178 (203)
T ss_pred EEEecC
Confidence 998654
No 61
>KOG4205|consensus
Probab=99.24 E-value=2e-11 Score=102.90 Aligned_cols=113 Identities=23% Similarity=0.435 Sum_probs=93.3
Q ss_pred ccCCCCCcccCcccHHHHHHHhccCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEE
Q psy222 56 QAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYG 135 (225)
Q Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~a 135 (225)
..+.||++.+++. ++..+.... .........+|||++||.++++++++++|.+||.|..+.++.|..+.+.++|+
T Consensus 68 ~~h~~dgr~ve~k-~av~r~~~~----~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFg 142 (311)
T KOG4205|consen 68 RTHKLDGRSVEPK-RAVSREDQT----KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFG 142 (311)
T ss_pred cccccCCccccce-eccCccccc----ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccce
Confidence 4577999999987 332222111 11223367799999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCCCCCC
Q psy222 136 FLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVLPG 174 (225)
Q Consensus 136 fV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~ 174 (225)
||.|.+++.+.+++. ..-+.|.++.+.|+.|.++....
T Consensus 143 fv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 143 FVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 999999999999988 57889999999999999876543
No 62
>KOG0109|consensus
Probab=99.19 E-value=3e-11 Score=98.74 Aligned_cols=78 Identities=28% Similarity=0.608 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.....+|+|+||.+.++..+|+..|.+||.|.+|.|+ ++|+||.|...++|..|++.|++.+|+|++|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 4567899999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
+..|..
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 987654
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=7.4e-11 Score=107.02 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcC------------CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEY------------GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
.....++|||+|||+.+++++|+++|..| +.|..+.+ .+.++||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34456899999999999999999999975 22333333 3357999999999999999996 99
Q ss_pred CCccCCcEEEEEEee
Q psy222 154 RQNFQGSEIIVDFEC 168 (225)
Q Consensus 154 g~~l~g~~l~V~~a~ 168 (225)
+..|.|+.|+|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 999999999987543
No 64
>KOG0132|consensus
Probab=99.16 E-value=2.3e-10 Score=104.09 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
...--++|||||.|+..++|.+|..+|+.||.|.+|.++.. ++||||...+..+|++||.+|+...+.++.|+|
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 44556789999999999999999999999999999998865 789999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.|+.....
T Consensus 490 ~Wa~g~G~ 497 (894)
T KOG0132|consen 490 AWAVGKGP 497 (894)
T ss_pred eeeccCCc
Confidence 99987544
No 65
>KOG0123|consensus
Probab=99.16 E-value=1.2e-10 Score=101.20 Aligned_cols=77 Identities=30% Similarity=0.526 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCCCC
Q psy222 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVL 172 (225)
Q Consensus 93 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~ 172 (225)
|||.||+..++..+|.++|+.||.|++|++.++. .| .+|| ||+|.+++.|.+||..|||..+.+++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999996 55 8999 9999999999999999999999999999988876443
No 66
>KOG4206|consensus
Probab=99.16 E-value=1.5e-10 Score=91.63 Aligned_cols=80 Identities=25% Similarity=0.531 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQ----AFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
.+..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|..|-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3455999999999999998887 999999999988763 677899999999999999999999999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|.+|+..
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9999864
No 67
>KOG4205|consensus
Probab=99.13 E-value=5.8e-11 Score=100.18 Aligned_cols=83 Identities=25% Similarity=0.453 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
..++|||++|+|+++++.|+++|.+||+|.+|.+++++.+++.++|+||+|++.+.+..+|. ...+.|+++.|.++-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999888887 35678999999999888
Q ss_pred CCCC
Q psy222 169 GRVL 172 (225)
Q Consensus 169 ~~~~ 172 (225)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7653
No 68
>KOG0110|consensus
Probab=99.07 E-value=5.8e-11 Score=107.03 Aligned_cols=83 Identities=14% Similarity=0.423 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
......|+|.|||+.++-.+|+.+|..||.|..|+|+.....+..+|||||+|-+..+|.+|+..|..+.|.|+.|+++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 33467999999999999999999999999999999997755677899999999999999999999999999999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
|..
T Consensus 690 A~~ 692 (725)
T KOG0110|consen 690 AKS 692 (725)
T ss_pred hcc
Confidence 975
No 69
>KOG0146|consensus
Probab=99.07 E-value=2.1e-10 Score=92.84 Aligned_cols=83 Identities=31% Similarity=0.532 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc-cCC--cEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN-FQG--SEIIVD 165 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~-l~g--~~l~V~ 165 (225)
+.++||||-|...-.|++++.+|..||.|.+|.+++.. .|.+||||||.|.+..+|+.||..|||.. +-| ..|+|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56799999999999999999999999999999999886 78899999999999999999999999975 444 579999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
++....+
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9976443
No 70
>KOG4212|consensus
Probab=99.06 E-value=3.7e-10 Score=96.95 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....|+|||.|||.++||..|++-|..||.|..+.|+ ..++.+| .|.|.++++|++|+..|++..|+|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 34567899999999999999999999999999999985 3577776 899999999999999999999999999998
Q ss_pred Ee
Q psy222 166 FE 167 (225)
Q Consensus 166 ~a 167 (225)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 73
No 71
>KOG0533|consensus
Probab=99.05 E-value=4.8e-09 Score=85.44 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
...+|+|.|||+.+++++|+++|..|+.+..+.|..++ .|.+.|.|-|.|...++|++|++.|++..|+|+.|++.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999999886 89999999999999999999999999999999999999876
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 533
No 72
>KOG0153|consensus
Probab=99.04 E-value=1.4e-09 Score=90.88 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL-NRQNFQGSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V 164 (225)
....-.+|||++|...++|.+|+.+|.+||.|..|.+... +++|||+|.+.+.|+.|.+.+ +...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445579999999999999999999999999999998865 569999999999999998754 545689999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 73
>KOG4661|consensus
Probab=99.04 E-value=2.5e-09 Score=94.60 Aligned_cols=83 Identities=27% Similarity=0.494 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..-.++|||.+|...+...+|+.+|++||.|+-.+|+++..+.-.++|+||++.+.++|.+||..||.+.|.|+.|.|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44567999999999999999999999999999999999977777889999999999999999999999999999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 875
No 74
>KOG0124|consensus
Probab=99.00 E-value=8.6e-10 Score=92.85 Aligned_cols=81 Identities=20% Similarity=0.399 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.-++|||..+.++.+|++|+..|+.||.|+.|.+.+....+.++||+|++|.+......||..||-..|+|+.|+|--+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 45799999999999999999999999999999999998888899999999999999999999999999999999998765
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 4
No 75
>KOG4209|consensus
Probab=98.98 E-value=3.4e-09 Score=86.34 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+...+||+|+.+.++.+++..+|+.||.|..+.|+.++..+++++|+||+|.+.+.++.+|. |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567899999999999999999999999999999999999899999999999999999999999 9999999999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
.+.+.+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998765
No 76
>KOG0123|consensus
Probab=98.98 E-value=1.9e-09 Score=93.77 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
..|||| +.+|+..|.++|+.+|.|++++|.+|. | +.|||||.|.++++|++||..||...|.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 6 9999999999999999999999999999999999998753
No 77
>KOG0110|consensus
Probab=98.97 E-value=1.8e-09 Score=97.56 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCC---ccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTG---HSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 93 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g---~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
|||.||++.++.++|..+|..+|.|..|.|...+... .+.||+||+|.+.++|+.|++.|+|+.|+|+.|.|+++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999999999999999999999887654221 234999999999999999999999999999999999998
No 78
>KOG0106|consensus
Probab=98.90 E-value=1.8e-09 Score=86.20 Aligned_cols=71 Identities=28% Similarity=0.600 Sum_probs=66.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
..|||++||+.+.+.+|+.||..||.|..|.+. .+|+||+|.+..+|..|+..||+.+|.+-.+.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 369999999999999999999999999999876 57999999999999999999999999998888998875
No 79
>KOG1548|consensus
Probab=98.90 E-value=5.7e-09 Score=87.32 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVI--------SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE 161 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~ 161 (225)
...|||.|||.++|-+++.++|++||.|. .|+|.++. .|+.+|-|++.|.-.++++-||..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45699999999999999999999999875 48888886 5999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q psy222 162 IIVDFECG 169 (225)
Q Consensus 162 l~V~~a~~ 169 (225)
|+|+.|+=
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999873
No 80
>KOG1995|consensus
Probab=98.82 E-value=2.2e-08 Score=84.33 Aligned_cols=89 Identities=22% Similarity=0.250 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVI--------SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ 158 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~ 158 (225)
....-+|||.+||..+++++|.++|.+|+.|. .|.|.+++.|++.|+-|.|.|.+...|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999875 4778889999999999999999999999999999999999
Q ss_pred CcEEEEEEeeCCCCCCC
Q psy222 159 GSEIIVDFECGRVLPGW 175 (225)
Q Consensus 159 g~~l~V~~a~~~~~~~~ 175 (225)
+.+|+|.+|..+..-++
T Consensus 143 gn~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVES 159 (351)
T ss_pred CCCchhhhhhhccCccc
Confidence 99999999987764443
No 81
>KOG4454|consensus
Probab=98.80 E-value=2.4e-09 Score=84.47 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
+..++|||+|+...++|+.|.++|-+.|.|..|.|..++ .++.+ ||||.|.++..+.-|++.|||..+.+..+.|.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345799999999999999999999999999999998876 56667 9999999999999999999999999998888876
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 54
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=1e-07 Score=67.09 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEE
Q psy222 91 RTLFIGRLNKNSREADLEQAFAE--YGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ----GSEIIV 164 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~----g~~l~V 164 (225)
+||.|.|||...+.+.|.+++.. .|..-.+.++.|..+..+.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988864 356777889999889999999999999999999999999999875 466788
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88763
No 83
>KOG1457|consensus
Probab=98.74 E-value=9.6e-08 Score=75.76 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeec-CCCCccceEEEEEeCCHHHHHHHHHHhCCCccC---CcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRD-FVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ---GSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~---g~~l 162 (225)
...-+||||.+||.++...+|..+|..|--.+.+.|... +.....+-+|||.|.+...|++|+.+|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345689999999999999999999999876666666543 222234579999999999999999999999986 5789
Q ss_pred EEEEeeCCC
Q psy222 163 IVDFECGRV 171 (225)
Q Consensus 163 ~V~~a~~~~ 171 (225)
+|++|+...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999998643
No 84
>KOG0226|consensus
Probab=98.71 E-value=1.7e-08 Score=81.36 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.......+||++.|..+++++.|-..|.+|-.....++++++.|++.+||+||.|.+..++..|+..|+|..++.+.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 44556689999999999999999999999998889999999999999999999999999999999999999999999887
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.-...
T Consensus 265 RkS~w 269 (290)
T KOG0226|consen 265 RKSEW 269 (290)
T ss_pred hhhhH
Confidence 65543
No 85
>KOG0151|consensus
Probab=98.68 E-value=3.9e-08 Score=89.06 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCC---CCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV---TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
.+.+++|||+||++.++++.|...|..||.|..|+|++.+. ....+.|+||.|-+..+|++|++.|+|..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44568999999999999999999999999999999998752 234567899999999999999999999999999999
Q ss_pred EEEeeCCC
Q psy222 164 VDFECGRV 171 (225)
Q Consensus 164 V~~a~~~~ 171 (225)
+-|.+.-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99997543
No 86
>KOG4211|consensus
Probab=98.64 E-value=1.4e-07 Score=82.45 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
....-|-+.+|||++|+++|.+||+-|+ |..+.+.+. +|+..|-|||+|.+++++++||+ .+...+..+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3456778899999999999999999987 777666554 79999999999999999999999 4777888888988877
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
..
T Consensus 84 ~~ 85 (510)
T KOG4211|consen 84 GG 85 (510)
T ss_pred CC
Confidence 54
No 87
>KOG4660|consensus
Probab=98.55 E-value=5.5e-08 Score=86.04 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
.-+..+|+|-|||..+++++|..+|+.||+|..|+.- -..++.+||+|.+..+|++|+++|++..|.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456899999999999999999999999999997653 33588999999999999999999999999998887
No 88
>KOG4210|consensus
Probab=98.39 E-value=3.6e-07 Score=76.83 Aligned_cols=86 Identities=23% Similarity=0.448 Sum_probs=76.7
Q ss_pred CCCCCCeEE-EcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 86 STDPTRTLF-IGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
......++| |++|+..+++++|+.+|..+|.|..+++..+..++..++|+||+|.....+..++.. ....+.++++.|
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 344556777 999999999999999999999999999999999999999999999999999999886 788899999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
....++..
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 99887643
No 89
>KOG0120|consensus
Probab=98.37 E-value=3e-07 Score=81.83 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
......+.|||++||..+++.++.+++..||.+....++.+..++.++||||.+|.+......|+..|||..+.+..|+|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 33445679999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
..|..
T Consensus 364 q~A~~ 368 (500)
T KOG0120|consen 364 QRAIV 368 (500)
T ss_pred ehhhc
Confidence 99875
No 90
>KOG4849|consensus
Probab=98.34 E-value=2.1e-06 Score=72.27 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYG--KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
......+|||||-|++|+++|.+.+..-| .+.++++..++.+|.+||||+|...+...+.+.++.|..+.|.|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33445789999999999999998887666 4677888888889999999999999999999999999999999875444
Q ss_pred E
Q psy222 165 D 165 (225)
Q Consensus 165 ~ 165 (225)
-
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 91
>KOG0147|consensus
Probab=98.32 E-value=2.2e-07 Score=82.19 Aligned_cols=84 Identities=30% Similarity=0.415 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.+..+.++||+-.|...+++.+|.+||+.+|.|..|.|+.|+.++..+|.|||+|.+.+.+..||. |.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 344556899999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.....
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 88653
No 92
>KOG1190|consensus
Probab=98.27 E-value=3.9e-06 Score=72.05 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 90 TRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 90 ~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
...|-|.||.. .+|.+.|..+|..||.|.+|+|+.++ +--|+|.|.+...|+-|++.|+|+.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888899855 58999999999999999999999886 4569999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 644
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=1.1e-05 Score=54.53 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=46.9
Q ss_pred eEEEcCCCCCCCHHHHH----HHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 92 TLFIGRLNKNSREADLE----QAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~----~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.|||.|||.+.+...|+ .++..|| .|..|. .+.|+|.|.+.+.|.+|++.|+|-.+-|++|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 68999999999887654 5566776 454442 35799999999999999999999999999999999
Q ss_pred ee
Q psy222 167 EC 168 (225)
Q Consensus 167 a~ 168 (225)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 74
No 94
>KOG1457|consensus
Probab=98.13 E-value=2.5e-06 Score=67.86 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=56.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
.....+.+|||.||..+++|++|+.+|+.|--...++|... .| -.+|||+|++.+.|..|+..|+|..|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 34456679999999999999999999999987766666532 23 34899999999999999998888765
No 95
>KOG4206|consensus
Probab=98.07 E-value=1.8e-05 Score=63.04 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=69.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~ 163 (225)
...++...+|+.|||..++.+.|..+|.+|.....|+++... ++.|||+|.+...+..|...|++..|- ...+.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 336677899999999999999999999999999999988664 789999999999999999999998876 77888
Q ss_pred EEEee
Q psy222 164 VDFEC 168 (225)
Q Consensus 164 V~~a~ 168 (225)
|.++.
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 87764
No 96
>KOG4211|consensus
Probab=98.04 E-value=1.5e-05 Score=69.95 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVIS-VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.....|-+.+||+.|++++|.+||+..-.|.. |.++.+. .+++.|-|||.|++.+.|++||.. |...|..+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35568899999999999999999997655544 4455554 677999999999999999999985 77778888888876
Q ss_pred ee
Q psy222 167 EC 168 (225)
Q Consensus 167 a~ 168 (225)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 64
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.6e-05 Score=56.95 Aligned_cols=71 Identities=21% Similarity=0.443 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC-----ccCCcEEEEE
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ-----NFQGSEIIVD 165 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~-----~l~g~~l~V~ 165 (225)
+.|+|.+++..++.++|+++|+.||.|..|.+... ..-|||.|.+.+.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56889999999999999999999999999988643 236999999999999999876544 4566666655
Q ss_pred Ee
Q psy222 166 FE 167 (225)
Q Consensus 166 ~a 167 (225)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 98
>KOG3152|consensus
Probab=98.01 E-value=1.4e-05 Score=64.81 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCC--------Cccce----EEEEEeCCHHHHHHHHHHhCCCc
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVT--------GHSKR----YGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~--------g~~kg----~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
..-.||+++||+.+...-|+++|+.||.|-.|.|.....+ +..+. -+.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999988776544 22222 25799999999999999999999
Q ss_pred cCCcE
Q psy222 157 FQGSE 161 (225)
Q Consensus 157 l~g~~ 161 (225)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 99
>KOG0106|consensus
Probab=98.00 E-value=4e-06 Score=67.17 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....+.|+|.+++..+.+.+|.++|.++|.+....+ ..+++||+|...+++.+||..|++..|.++.|.+.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 445578899999999999999999999999854443 25689999999999999999999999999999993
No 100
>KOG0105|consensus
Probab=97.81 E-value=0.00028 Score=54.85 Aligned_cols=66 Identities=26% Similarity=0.345 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
......|.|.+||...+|.+|++++.+.|.|+...+.+| |++.|+|...++++-||..|....+..
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 334568999999999999999999999999999999876 478999999999999999998877643
No 101
>KOG1456|consensus
Probab=97.79 E-value=0.00089 Score=57.31 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=64.8
Q ss_pred CCCCCCCeEEEc--CCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC--Cc
Q psy222 85 SSTDPTRTLFIG--RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ--GS 160 (225)
Q Consensus 85 ~~~~~~~~l~V~--nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~--g~ 160 (225)
....+.+.|.+. |--+.+|-+-|..+...+|.|..|.|.+. ++. -|.|+|++.+.|++|.+.|||..|. -+
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccce
Confidence 344455555544 54566899999999999999999998865 333 4899999999999999999999874 47
Q ss_pred EEEEEEeeCC
Q psy222 161 EIIVDFECGR 170 (225)
Q Consensus 161 ~l~V~~a~~~ 170 (225)
+|+|++|++.
T Consensus 190 TLKIeyAkP~ 199 (494)
T KOG1456|consen 190 TLKIEYAKPT 199 (494)
T ss_pred eEEEEecCcc
Confidence 8999999874
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.74 E-value=8.2e-05 Score=62.68 Aligned_cols=81 Identities=11% Similarity=0.276 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHH----H--HHHHhcCCceeEEEEeecCCCCc-cce--EEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 89 PTRTLFIGRLNKNSREAD----L--EQAFAEYGKVISVRVVRDFVTGH-SKR--YGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~----L--~~~F~~~G~v~~v~i~~~~~~g~-~kg--~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
...-+||-+|++.+..++ | .++|.+||.|..|.|.+....-. ..+ -.||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999988876655 3 48999999999987765431111 112 24999999999999999999999999
Q ss_pred cEEEEEEeeC
Q psy222 160 SEIIVDFECG 169 (225)
Q Consensus 160 ~~l~V~~a~~ 169 (225)
+.|+..+-..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999888653
No 103
>KOG1190|consensus
Probab=97.64 E-value=0.00016 Score=62.44 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS-EIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~-~l~V~ 165 (225)
.+++.+|.+.|||.+++|++|+.+|..-|......... ++.+-+|++.+.+.++|-.|+..++.+.+... .|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 46778999999999999999999999888765543332 33456999999999999999999999998765 89999
Q ss_pred EeeC
Q psy222 166 FECG 169 (225)
Q Consensus 166 ~a~~ 169 (225)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9864
No 104
>KOG0129|consensus
Probab=97.63 E-value=0.00017 Score=63.82 Aligned_cols=67 Identities=27% Similarity=0.401 Sum_probs=61.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHH
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFA-EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRA 151 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 151 (225)
..-++.+|||||+||.-++.++|..+|. -||.|+.+-|-+|.+-+-++|-+-|+|.+-..-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4566789999999999999999999998 899999999999977888999999999999999999874
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00017 Score=45.00 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHH
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al 149 (225)
+.|-|.+.+.+..+. +..+|..||.|+.+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467788888876644 556888999999988762 2458999999999999985
No 106
>KOG4307|consensus
Probab=97.60 E-value=0.00026 Score=64.76 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 88 DPTR-TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 88 ~~~~-~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.+++ .|-|.|+|+.++-++|-+||.-|-.+-.-.+++-.+.|+..|-|.|.|++.++|.+|...|+++.|..++|.|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 778899999999999999999997654433333345899999999999999999999999999999999998875
No 107
>KOG1548|consensus
Probab=97.53 E-value=0.00036 Score=59.03 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=63.9
Q ss_pred CCCCCCCeEEEcCCCC----CCC-------HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 85 SSTDPTRTLFIGRLNK----NSR-------EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~----~~t-------e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
......++|.|.||=. ..+ .++|.+-..+||.|..|.|. ..++.|.+.|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhc
Confidence 3344567899988832 223 23555667899999999886 33468999999999999999999999
Q ss_pred CCccCCcEEEEEEeeC
Q psy222 154 RQNFQGSEIIVDFECG 169 (225)
Q Consensus 154 g~~l~g~~l~V~~a~~ 169 (225)
|..|+|+.|...+-..
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 9999999999887654
No 108
>KOG0120|consensus
Probab=97.50 E-value=0.00032 Score=62.84 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=51.7
Q ss_pred HHHHHHhcCCceeEEEEeecCCC---CccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 106 DLEQAFAEYGKVISVRVVRDFVT---GHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 106 ~L~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+++.-+++||.|..|.|.++... .-..|-.||+|.+.+++++|.+.|+|.+|.++.|+..|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34566678999999999887212 2345678999999999999999999999999999988754
No 109
>KOG2416|consensus
Probab=97.44 E-value=0.00045 Score=62.23 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc--
Q psy222 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFA-EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF-- 157 (225)
Q Consensus 81 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l-- 157 (225)
.+.+.....++.|||.||-.-+|.-+|+.++. .+|.|+.. +.|+ .|..|||.|.+.++|...+.+|||..+
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 34446778889999999999999999999998 56667666 3333 477899999999999999999999876
Q ss_pred -CCcEEEEEEeeC
Q psy222 158 -QGSEIIVDFECG 169 (225)
Q Consensus 158 -~g~~l~V~~a~~ 169 (225)
+.+.|.|.|...
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 457788988864
No 110
>KOG1456|consensus
Probab=97.41 E-value=0.0014 Score=56.17 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNKN-SREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....+++.+.|-+|... +.-+.|..+|=.||.|+.|++++.+ .|-|.|+..+..++++|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 45567789999999876 6678899999999999999999876 56799999999999999999999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998753
No 111
>KOG0129|consensus
Probab=97.40 E-value=0.00065 Score=60.27 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=50.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCC---CCccce---EEEEEeCCHHHHHHHHHHhC
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV---TGHSKR---YGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~kg---~afV~F~~~~~a~~Al~~l~ 153 (225)
..-.++||||+||++++|+.|...|..||.+ .|.+..... --.++| |+|+.|+++..+..-|.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3456899999999999999999999999975 555553211 122466 99999999998888776543
No 112
>KOG2314|consensus
Probab=97.39 E-value=0.0015 Score=58.65 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCH------HHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcE
Q psy222 89 PTRTLFIGRLNKNSRE------ADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSE 161 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te------~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~ 161 (225)
-...|+|.|+|.--.. ..|..+|+++|.|+.+.++-+.. |..+||.|++|.+...|+.|++.|||+.|+ .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3457889999975332 24568999999999999988864 448999999999999999999999999875 466
Q ss_pred EEEEEee
Q psy222 162 IIVDFEC 168 (225)
Q Consensus 162 l~V~~a~ 168 (225)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776543
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.26 E-value=0.0014 Score=46.44 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=50.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEE-EeecC------CCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE-
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVR-VVRDF------VTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE- 161 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~------~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~- 161 (225)
..-|.|-+.|.. .-..|.++|++||.|++.. +..+. ........-.|.|.++.+|++||. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 346778899988 4567888999999998764 11100 001124578999999999999999 5999999865
Q ss_pred EEEEEee
Q psy222 162 IIVDFEC 168 (225)
Q Consensus 162 l~V~~a~ 168 (225)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466663
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0022 Score=48.32 Aligned_cols=74 Identities=24% Similarity=0.415 Sum_probs=52.6
Q ss_pred CCCCCeEEEcCCC------CCCCH---HHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 87 TDPTRTLFIGRLN------KNSRE---ADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 87 ~~~~~~l~V~nLp------~~~te---~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
.++-.||.|.=+. ..+.+ .+|.+.|..||.+.-++++.+ .-+|+|.+-..|.+|+. |+|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3455577776554 12332 256678889999998888744 36899999999999999 899999
Q ss_pred CCcEEEEEEeeC
Q psy222 158 QGSEIIVDFECG 169 (225)
Q Consensus 158 ~g~~l~V~~a~~ 169 (225)
.|+.|+|++..+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999999765
No 115
>KOG1855|consensus
Probab=97.11 E-value=0.00062 Score=59.13 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=56.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeec---CCC--Cc--------cceEEEEEeCCHHHHHHHHHHhC
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRD---FVT--GH--------SKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~~~--g~--------~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
..+.++|.+-|||.+-.-+.|.++|..||.|..|+|+.. ... +. .+-+|||+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357899999999999888999999999999999999865 211 11 25589999999999999999875
Q ss_pred C
Q psy222 154 R 154 (225)
Q Consensus 154 g 154 (225)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 116
>KOG1365|consensus
Probab=97.08 E-value=0.00094 Score=57.33 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCc-eeE--EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGK-VIS--VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~--v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....|-+.+||+..+.++|..||..|-. |.. |+++.+. .|++.|-|||+|.+.+.|..|....+.+....+.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3567889999999999999999988864 333 6666664 78999999999999999999999888877778888887
Q ss_pred Eee
Q psy222 166 FEC 168 (225)
Q Consensus 166 ~a~ 168 (225)
-+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 654
No 117
>KOG1365|consensus
Probab=96.92 E-value=0.00084 Score=57.62 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC----CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEY----GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~----G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
-.|-+.+||+++++.++.+||..- +..+.|.+++.. .|+..|-|||.|..+++|+.||.. |...|+-+-|.+-
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 355667999999999999999632 234456555543 788999999999999999999985 5555655554443
No 118
>KOG4676|consensus
Probab=96.90 E-value=0.0013 Score=56.68 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=61.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCC---CCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV---TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
..|.|.||.+.++.++++.||...|.|..+.|+.... -....-.|||.|.+...+..|.. |.++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3799999999999999999999999999998876321 12334589999999999999987 6777777776666554
Q ss_pred e
Q psy222 168 C 168 (225)
Q Consensus 168 ~ 168 (225)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 119
>KOG0112|consensus
Probab=96.90 E-value=0.0012 Score=62.24 Aligned_cols=78 Identities=22% Similarity=0.396 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG--SEII 163 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~ 163 (225)
...+...+||++|..++....|...|..||.|..|.+-.. .-||||.|.+...++.|++.|.+..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4556789999999999999999999999999988876432 4599999999999999999999999987 6799
Q ss_pred EEEeeC
Q psy222 164 VDFECG 169 (225)
Q Consensus 164 V~~a~~ 169 (225)
|.|+.+
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 999975
No 120
>KOG2202|consensus
Probab=96.88 E-value=0.00057 Score=55.66 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=50.2
Q ss_pred HHHHHHh-cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 106 DLEQAFA-EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 106 ~L~~~F~-~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+|...|. +||+|+.+.|..+. .-...|=+||.|..+++|++|+..||+.-|.|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444454 89999988765543 33457789999999999999999999999999999988864
No 121
>KOG1996|consensus
Probab=96.88 E-value=0.0036 Score=52.04 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCccce-EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKR-YGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 104 e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg-~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
++++++.+.+||.|..|.|......-.... -.||+|...+.|.+|+-.|||..|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356778899999999998877642222221 36999999999999999999999999998877754
No 122
>KOG0128|consensus
Probab=96.84 E-value=0.00094 Score=62.50 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
...|||.|+|+..|.++|+.++..+|.+.++.+++.+ .|+++|.|||.|.++.++.+++..++...+.-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4579999999999999999999999999999988876 899999999999999999999988887778777788888665
No 123
>KOG2193|consensus
Probab=96.75 E-value=0.0016 Score=56.57 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=57.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC-ccCCcEEEEEEeeC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ-NFQGSEIIVDFECG 169 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~-~l~g~~l~V~~a~~ 169 (225)
..+|++||.+.++..+|+.+|...-.-..-.++. -.||+||++.+...|.+|++.++++ .+.|.++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999996431111111221 2579999999999999999999997 58999999998765
Q ss_pred C
Q psy222 170 R 170 (225)
Q Consensus 170 ~ 170 (225)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 3
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.72 E-value=0.011 Score=37.95 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC---CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEY---GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l 152 (225)
..|+|.++.. ++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999964 6778899999988 235689999774 4789999999999999764
No 125
>KOG4307|consensus
Probab=96.72 E-value=0.0014 Score=60.29 Aligned_cols=82 Identities=16% Similarity=0.031 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS-VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
.....+..|||..||..+++.++-.+|...-.|++ |.|.+-. +++.++.|||.|.+++++..|+..-+.+.++.+.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 55667789999999999999999999987666776 5555544 778889999999998888888875566667778888
Q ss_pred EEEe
Q psy222 164 VDFE 167 (225)
Q Consensus 164 V~~a 167 (225)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 8754
No 126
>KOG0128|consensus
Probab=96.56 E-value=0.00014 Score=67.78 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
....++||.||+..+.+++|...|..++.+..+++.....+++.+|+|||+|...+.+.+||.......+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3456899999999999999999999999888877664455788999999999999999999985444333
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.51 E-value=0.012 Score=40.05 Aligned_cols=55 Identities=16% Similarity=0.370 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR 154 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g 154 (225)
+..||. +|..+...+|.++|+.||.| .|.++.+. -|||...+.+.|..++..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345555 99999999999999999977 77777664 699999999999999887753
No 128
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.36 E-value=0.083 Score=49.60 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=49.7
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCcee-----EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 92 TLFIG-RLNKNSREADLEQAFAEYGKVI-----SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 92 ~l~V~-nLp~~~te~~L~~~F~~~G~v~-----~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
++||. +--..++..+|-.++..-+.|. .|.|. ..|.||+.. ...+...+..|++..+.|+.|.|+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 45553 3345678888877776554443 45554 348999987 566788889999999999999999
Q ss_pred EeeC
Q psy222 166 FECG 169 (225)
Q Consensus 166 ~a~~ 169 (225)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8753
No 129
>KOG0112|consensus
Probab=95.99 E-value=0.0021 Score=60.61 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.....+.+||++||+..+++.+|+..|..+|.|..|.|.+.+ -+....|+||.|.+...+..|+..+.+..|....+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344567899999999999999999999999999999987664 2334558999999999999999989888887666666
Q ss_pred EEee
Q psy222 165 DFEC 168 (225)
Q Consensus 165 ~~a~ 168 (225)
.+..
T Consensus 446 glG~ 449 (975)
T KOG0112|consen 446 GLGQ 449 (975)
T ss_pred cccc
Confidence 6654
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.93 E-value=0.014 Score=45.84 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=50.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-CCce---eEEEEeecCCC--CccceEEEEEeCCHHHHHHHHHHhCCCccCC---
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAE-YGKV---ISVRVVRDFVT--GHSKRYGFLEYDCEKACLAAIRALNRQNFQG--- 159 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~v---~~v~i~~~~~~--g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g--- 159 (225)
...+|.|++||+.+||+++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++..-+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4468999999999999998886665 5544 33331122111 1123458999999999999999999988754
Q ss_pred --cEEEEEEeeC
Q psy222 160 --SEIIVDFECG 169 (225)
Q Consensus 160 --~~l~V~~a~~ 169 (225)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3466777654
No 131
>KOG0115|consensus
Probab=95.87 E-value=0.012 Score=48.14 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
..|||.||+..+.-+.|...|+.||.|....++-|. .++..+-++|.|...-.+.+|+..+.-.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCc
Confidence 689999999999999999999999999887666663 57777889999999999999998774433
No 132
>KOG2253|consensus
Probab=95.86 E-value=0.0069 Score=55.45 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 83 HTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 83 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
.....++..+|||+||...+..+-++.++..||.|..+..+. |+|.+|........|+..|+...+++..+
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 336677888999999999999999999999999988776542 99999999999999999999999999887
Q ss_pred EEEEe
Q psy222 163 IVDFE 167 (225)
Q Consensus 163 ~V~~a 167 (225)
.+...
T Consensus 104 ~~~~d 108 (668)
T KOG2253|consen 104 IENVD 108 (668)
T ss_pred hccch
Confidence 76653
No 133
>KOG2068|consensus
Probab=95.86 E-value=0.0034 Score=53.09 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCeEEEcCCCCCCCHH-HHH--HHHhcCCceeEEEEeecCC----CCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 90 TRTLFIGRLNKNSREA-DLE--QAFAEYGKVISVRVVRDFV----TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~-~L~--~~F~~~G~v~~v~i~~~~~----~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
.+-+||-+|+.....+ .|+ ++|.+||.|..|.+..+.. .+... -+||+|...++|..||...+|..++++.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3567888998876554 443 7899999999998877651 12222 37999999999999999999999999887
Q ss_pred EEEEeeC
Q psy222 163 IVDFECG 169 (225)
Q Consensus 163 ~V~~a~~ 169 (225)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7777654
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.30 E-value=0.25 Score=35.60 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=50.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
...+.+...|+.++-++|..+.+.+- .|..++|+++. ..++-.+++.|.+.+.|..-...+||+.|.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33445555666666677766666554 47788999874 3356689999999999999999999998754
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.27 E-value=0.13 Score=38.70 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=53.9
Q ss_pred CCCCCeEEEcCCCCCCCH-H---HHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 87 TDPTRTLFIGRLNKNSRE-A---DLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te-~---~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
.++-.+|.|.=|..++.. + .+...++.||.|.+|.+. .+.-|.|.|.+..+|.+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 456678888766555432 3 445667899999998765 245799999999999999998765 4556666
Q ss_pred EEEEee
Q psy222 163 IVDFEC 168 (225)
Q Consensus 163 ~V~~a~ 168 (225)
...|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 666643
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.93 E-value=0.15 Score=33.83 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=38.7
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCc-----eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 92 TLFIG-RLNKNSREADLEQAFAEYGK-----VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 92 ~l~V~-nLp~~~te~~L~~~F~~~G~-----v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
++||. +--..++..+|..++...+. |-.|.|. ..|+||+... +.+..++..|++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 33445788888888876544 4466765 3389999874 57889999999999999999998
Q ss_pred Ee
Q psy222 166 FE 167 (225)
Q Consensus 166 ~a 167 (225)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 137
>KOG2591|consensus
Probab=94.48 E-value=0.072 Score=48.16 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh--cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC--CccCCcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFA--EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR--QNFQGSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~--~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g--~~l~g~~l 162 (225)
....|.|.|.-||..+..++++.+|. .|-.+.+|.+..+. -=||+|.+..+|+.|.++|.. +.|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 44567888999999999999999996 46777888776542 258999999999999887644 24555554
Q ss_pred EE
Q psy222 163 IV 164 (225)
Q Consensus 163 ~V 164 (225)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 43
No 138
>KOG4210|consensus
Probab=94.22 E-value=0.037 Score=46.75 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
....++|++++.+.+.+.++..++..+|.+..+.+.........+++++|.|...+.+..||.....+.+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35678999999999999989999999998877776665567788999999999999999999954445666766666665
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5433
No 139
>KOG4660|consensus
Probab=94.15 E-value=0.083 Score=47.66 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHH-hcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC---C-cEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAF-AEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ---G-SEI 162 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~---g-~~l 162 (225)
...+++.|.|+|...|-..|.+.. ...|.-..+.++.|-.+..+.|||||.|.+.+.+..+.+++||+.+. . +.+
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia 465 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIA 465 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeee
Confidence 344566777777665555444333 24566667888888778888999999999999999999999998753 2 446
Q ss_pred EEEEee
Q psy222 163 IVDFEC 168 (225)
Q Consensus 163 ~V~~a~ 168 (225)
.+.||+
T Consensus 466 ~itYAr 471 (549)
T KOG4660|consen 466 SITYAR 471 (549)
T ss_pred eeehhh
Confidence 666765
No 140
>KOG2135|consensus
Probab=93.86 E-value=0.037 Score=49.03 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 90 TRTLFIGRLNKNS-READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 90 ~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.+.|-+.-+|+.. +-++|..+|.+||.|..|.+-.. -.-|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3455555556554 45889999999999999988644 2358999999999977776 68999999999999987
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 141
>KOG4285|consensus
Probab=93.62 E-value=0.27 Score=41.37 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=51.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE-EEEEeeCC
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI-IVDFECGR 170 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l-~V~~a~~~ 170 (225)
=|-|-++|+.-. .-|..+|++||.|++.... ..-.+-+|.|.+.-+|++||.+ ||..|++..+ -|+-+..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 344557777643 4567889999998775433 2245889999999999999994 9999988654 36654443
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.58 E-value=0.2 Score=39.52 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC--CCccCCcEEEEEEeeC
Q psy222 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN--RQNFQGSEIIVDFECG 169 (225)
Q Consensus 104 e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~--g~~l~g~~l~V~~a~~ 169 (225)
...|+++|..|+.+..+.++..- +=..|.|.+.+.|..|...|+ +..+.|..|+|-++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 47899999999998888776442 236799999999999999999 8999999999999854
No 143
>KOG4574|consensus
Probab=91.98 E-value=0.14 Score=48.63 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEEee
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF--QGSEIIVDFEC 168 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l--~g~~l~V~~a~ 168 (225)
.+.++.|.+-..+-..|..+|..||.|.++..+++ -..|.|+|...+.|-.|+.+|+|+++ -|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 35556666667788889999999999999988776 34799999999999999999999874 57789999988
Q ss_pred CC
Q psy222 169 GR 170 (225)
Q Consensus 169 ~~ 170 (225)
.-
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 63
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.93 E-value=0.86 Score=29.65 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 101 NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 101 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.++-++|+..|..|. ...|. .++ .| =||.|.+..+|++|....++..+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356789999999997 33443 332 23 479999999999999999999887777654
No 145
>KOG2193|consensus
Probab=89.79 E-value=0.034 Score=48.60 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe-ecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVV-RDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~-~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
..+.+-|.|||+...|+.|..++.+||.+..|..+ ++..+ ...-|+|...+.+..||..|++..|....++|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 34568899999999999999999999999988654 33322 23347888999999999999999999999999886
Q ss_pred e
Q psy222 168 C 168 (225)
Q Consensus 168 ~ 168 (225)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 4
No 146
>KOG0804|consensus
Probab=89.54 E-value=1.4 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC-CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEY-GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
...|+|=.+|..++-.+|..|+..| -.|..++|++|.. -++-..+|.|.+.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999998765 4588999999642 234468999999999999999999998764
No 147
>KOG2318|consensus
Probab=87.48 E-value=3.8 Score=37.66 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=62.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CceeEEEEeecC----------CCCc-------------------
Q psy222 85 SSTDPTRTLFIGRLNKN-SREADLEQAFAEY----GKVISVRVVRDF----------VTGH------------------- 130 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~----------~~g~------------------- 130 (225)
.....+++|-|-||.|. +...+|..+|..| |.|.+|.|.... ..|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567889999999997 7788999999876 578888875422 1111
Q ss_pred ------------------cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 131 ------------------SKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 131 ------------------~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
..-||.|+|.+...|.+....++|..|...-..+.+.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 1237999999999999999999999987655555443
No 148
>KOG4676|consensus
Probab=87.29 E-value=0.076 Score=46.04 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
++|+|++|+..+...++-+.|..+|.|...++. .+....+|-|.|........|+. ++|..+.-+...+.+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAII 223 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhc
Confidence 689999999999999999999999998877764 34456678899998888888888 5777765444444333
No 149
>KOG4410|consensus
Probab=82.75 E-value=5 Score=33.72 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCce-eEEEEeecCCCCccceEEEEEeCCH-------HHHHHHHHHh
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKV-ISVRVVRDFVTGHSKRYGFLEYDCE-------KACLAAIRAL 152 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~kg~afV~F~~~-------~~a~~Al~~l 152 (225)
...-|||+||+.++.-.+|+..+.+-+.+ .++.+. | +.+-||+.|.+. .++.+++..+
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCccCCCCCchHHHHHhccC
Confidence 34569999999999999999999877653 344432 1 356799999764 3455555444
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.17 E-value=4.5 Score=26.47 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=43.9
Q ss_pred HHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 105 ADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 105 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
++|++.|..+| .+..+.-++.+.+..+..+-||+.....+... .|+-+.|+++++.|+-...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 47788888777667677778888875543333 3566778898888876543
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.62 E-value=5.8 Score=25.87 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=43.1
Q ss_pred HHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 105 ADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 105 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
++|.+.|...| .|..|.-+..+.+..+...-||++....+ ..+.|+-+.|.+..|.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 46777787777 47777777766567777788898876544 2333556778888888877554
No 152
>KOG4483|consensus
Probab=75.43 E-value=9.8 Score=33.53 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHH
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGK-VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRA 151 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 151 (225)
...+-.+.|=|-++|...-.++|...|..|+. -.+|+|+-+. .||..|.+...|..||-.
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 33445678888899999988999999999864 4677877664 699999999999999884
No 153
>KOG4454|consensus
Probab=68.82 E-value=1.1 Score=36.26 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=57.3
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q psy222 90 TRTLFIGR----LNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160 (225)
Q Consensus 90 ~~~l~V~n----Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~ 160 (225)
..+++.|+ |...++++.+...|++.+.+..+++.++. .++++.+.|+++......-.++....+..+--+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 35677888 88889999999999999999999999886 488899999999888888888877666554333
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.44 E-value=18 Score=26.28 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=30.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCC-HHHHHHHHH
Q psy222 92 TLFIGRLNKN---------SREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC-EKACLAAIR 150 (225)
Q Consensus 92 ~l~V~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~-~~~a~~Al~ 150 (225)
++.|-|++.. ++.+.|++.|+.|..+ .++.+.+. .-..|+++|.|.. -.-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 5666777553 3457899999999876 45555654 2458899999975 444555554
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=63.45 E-value=9 Score=30.59 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=44.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHH
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al 149 (225)
........+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 44556778999999999999999999999999977776655433333334444444333333333
No 156
>KOG4019|consensus
Probab=58.14 E-value=9.9 Score=29.84 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCHH-----HHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEEE
Q psy222 91 RTLFIGRLNKNSREA-----DLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS-EIIV 164 (225)
Q Consensus 91 ~~l~V~nLp~~~te~-----~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~-~l~V 164 (225)
.++++.+|+..+..+ ....+|.+|-......+++. .++..|.|.+.+.|..|...++...|.+. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 356666776654322 23456666655544444432 34566899999999999999999999988 7777
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
-++.+
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 77764
No 157
>KOG2295|consensus
Probab=56.74 E-value=1.7 Score=39.56 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE 161 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~ 161 (225)
..++|||.|+++.++-++|..++..+-.+..+.+-......+..-+..|+|.---...-|+.+||+.-+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4578999999999999999999998877777666544434445567789998666666666667776655443
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=50.10 E-value=42 Score=28.48 Aligned_cols=82 Identities=15% Similarity=0.313 Sum_probs=56.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCC-------CCccceEEEEEeCCHHHHHHHH----HHhCC-
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV-------TGHSKRYGFLEYDCEKACLAAI----RALNR- 154 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~-------~g~~kg~afV~F~~~~~a~~Al----~~l~g- 154 (225)
.-.++.|.+.||..+++-..+-..|-+||.|++|.++.+.. .-+......+-|-+.+.|.... +.|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34456788899999998888888899999999999997651 1123356788888877755432 22221
Q ss_pred -CccCCcEEEEEEee
Q psy222 155 -QNFQGSEIIVDFEC 168 (225)
Q Consensus 155 -~~l~g~~l~V~~a~ 168 (225)
+.|.-..|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23566667776654
No 159
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=47.61 E-value=1.3e+02 Score=26.91 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=29.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CceeEEEEe
Q psy222 86 STDPTRTLFIGRLNKN-SREADLEQAFAEY----GKVISVRVV 123 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~ 123 (225)
...++.+|-|-||.|. +...+|...|+.| |.|..|.|.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3567788999999997 6778899888865 567666653
No 160
>KOG2891|consensus
Probab=47.34 E-value=31 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHhcCCceeEEEEee
Q psy222 88 DPTRTLFIGRLNKN------------SREADLEQAFAEYGKVISVRVVR 124 (225)
Q Consensus 88 ~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~v~~v~i~~ 124 (225)
.-+.|||+.+||-. .++.-|+..|..||.|..|.|+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34468898888753 35678999999999999887753
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.59 E-value=54 Score=20.98 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCceeEEEE
Q psy222 105 ADLEQAFAEYGKVISVRV 122 (225)
Q Consensus 105 ~~L~~~F~~~G~v~~v~i 122 (225)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999866554
No 162
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=46.20 E-value=48 Score=22.69 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~ 140 (225)
.-|||++++..+.|.-...+....+.-.-+-+..+ ....||+|-.+.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 46999999999887766666665554434444433 226789988874
No 163
>KOG4008|consensus
Probab=46.09 E-value=20 Score=29.43 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS 119 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~ 119 (225)
.......++|+-|||..++++.|.++.+++|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 45566678999999999999999999999986544
No 164
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=43.31 E-value=1.5e+02 Score=26.63 Aligned_cols=7 Identities=0% Similarity=-0.282 Sum_probs=3.1
Q ss_pred ceEEEEE
Q psy222 132 KRYGFLE 138 (225)
Q Consensus 132 kg~afV~ 138 (225)
.|.|++.
T Consensus 342 ~G~ai~l 348 (456)
T PRK10590 342 TGEALSL 348 (456)
T ss_pred CeeEEEE
Confidence 3455433
No 165
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.64 E-value=36 Score=28.91 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=28.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCCCCCCC
Q psy222 135 GFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVLPGW 175 (225)
Q Consensus 135 afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~ 175 (225)
|||+|.+..+|+.|++.+.... ...++|..|.+...=.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 7999999999999999655443 35567777765544444
No 166
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=42.46 E-value=96 Score=22.07 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHH
Q psy222 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149 (225)
Q Consensus 104 e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al 149 (225)
+.+|..+++.+| |..-.|..+. ..+.-|+++++.+.+...++|
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde--~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDE--EENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecC--CcccEEEEEEEcChHHHHHHH
Confidence 356778888888 6677777664 234679999999655555554
No 167
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.38 E-value=1.1e+02 Score=20.85 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHH
Q psy222 93 LFIGRLNKNSREADLEQAFAE-YG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRA 151 (225)
Q Consensus 93 l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 151 (225)
.|+--++..++..+|+..++. |+ .|..|..+.-+ .+ .-=|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 455567889999999988875 55 36677665543 12 22499999887777766543
No 168
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=39.72 E-value=54 Score=23.01 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=30.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.-|||++++..+.+.-...+-+.++.-.-+-+..+ ....||+|-.+.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 46999999988877655555555554333333333 2335899988864
No 169
>KOG1295|consensus
Probab=39.56 E-value=30 Score=30.30 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=46.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEeecCC--CCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGK-VISVRVVRDFV--TGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~--~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
-..|.|.+||+..++.+|.+....|-. +....+..... ...-.+.+||.|...++...-...++|++|-+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 457889999999999998877776532 22222221110 11125678999999999888777788876533
No 170
>KOG4365|consensus
Probab=38.01 E-value=6.1 Score=35.20 Aligned_cols=77 Identities=6% Similarity=-0.132 Sum_probs=56.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
..|+..||....+.++.-+|.-||.|..+.+.+.-..+..+-.+||+.. ...+..+|..+.-..+.+..++|.++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567788999999999999999999988876654434444556777765 3556777776666677788888888764
No 171
>KOG3973|consensus
Probab=36.98 E-value=75 Score=27.71 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.3
Q ss_pred CHHHHH
Q psy222 103 READLE 108 (225)
Q Consensus 103 te~~L~ 108 (225)
++.+|+
T Consensus 199 ~w~~iE 204 (465)
T KOG3973|consen 199 TWPEIE 204 (465)
T ss_pred hHHHHH
Confidence 333343
No 172
>PRK11901 hypothetical protein; Reviewed
Probab=33.77 E-value=1.1e+02 Score=26.51 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEE--EEEeCCHHHHHHHHHHhCCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYG--FLEYDCEKACLAAIRALNRQ 155 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~a--fV~F~~~~~a~~Al~~l~g~ 155 (225)
++|-|-. ...++.|..|..+++ +..+.+......|+.- |. |-.|.+.++|..|+..|...
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 4554443 345788888888775 4556666554445432 33 34789999999999987643
No 173
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.10 E-value=65 Score=20.90 Aligned_cols=26 Identities=12% Similarity=0.301 Sum_probs=21.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 134 YGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 134 ~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
+.+|.|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999988877655533
No 174
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=32.05 E-value=62 Score=27.04 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVR 124 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~ 124 (225)
.....|+|||++++-.-|..++...-.+....++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 34677999999999999999987654444444443
No 175
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.48 E-value=17 Score=31.52 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC
Q psy222 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ 155 (225)
Q Consensus 104 e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~ 155 (225)
...|.+++.+.|.|..-.+.+.- +.|.+||....+++++++++.|...
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 45677888888877654444332 4678899999999999999998865
No 176
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.39 E-value=21 Score=31.54 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=46.9
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHHhc--CCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHH
Q psy222 90 TRTLFIGRLNKNSREA--------DLEQAFAE--YGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~--------~L~~~F~~--~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al 149 (225)
.+.+|+.++......+ ++..+|.. .+.+..+...++......+|..|++|.....+++.+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4567887777765544 88889987 566667777777667778888999999999999987
No 177
>KOG3702|consensus
Probab=30.31 E-value=25 Score=33.00 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=54.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
+||+-|--..-+..-+..++..++.++...+++.-..+..+.-++++|.....+..|.. |.+..+....+.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 88888877777788888889899998888877766567667789999999988877755 566665554433
No 178
>COG4907 Predicted membrane protein [Function unknown]
Probab=27.90 E-value=57 Score=29.57 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=5.9
Q ss_pred HHHHHHHHHhCC
Q psy222 143 KACLAAIRALNR 154 (225)
Q Consensus 143 ~~a~~Al~~l~g 154 (225)
+.+.+|++.++.
T Consensus 526 dkVvkam~~~~~ 537 (595)
T COG4907 526 DKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhCc
Confidence 445555554443
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.29 E-value=35 Score=23.52 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHH
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAF 111 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F 111 (225)
....++|-|.|||....+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3456799999999999999998644
No 180
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=25.87 E-value=3.6e+02 Score=24.78 Aligned_cols=49 Identities=20% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHHh----cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 104 EADLEQAFA----EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 104 e~~L~~~F~----~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
..+|..+|- .+|.|+.+.+...+.. ......++.|.+.+++..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 456767664 5777888876655432 234567889999999999987764
No 181
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=25.16 E-value=1.4e+02 Score=22.12 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 104 e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
|.+|+..| -|..+..+.|+... ....+-+..+.+.. ...+|..|.+..+.+++|.|..-
T Consensus 2 e~~lkAa~-l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~ 60 (145)
T PF13689_consen 2 EYQLKAAY-LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRL 60 (145)
T ss_pred HHHHHHHH-HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEEC
Confidence 45565544 22224455555432 23346666666555 45677788889999999998764
No 182
>KOG3262|consensus
Probab=25.08 E-value=1.7e+02 Score=23.13 Aligned_cols=7 Identities=0% Similarity=0.463 Sum_probs=3.4
Q ss_pred CeEEEcC
Q psy222 91 RTLFIGR 97 (225)
Q Consensus 91 ~~l~V~n 97 (225)
.-||+.|
T Consensus 81 APIylen 87 (215)
T KOG3262|consen 81 APIYLEN 87 (215)
T ss_pred Cceeecc
Confidence 3455543
No 183
>KOG0116|consensus
Probab=24.53 E-value=1.3e+02 Score=27.01 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy222 142 EKACLAAIR 150 (225)
Q Consensus 142 ~~~a~~Al~ 150 (225)
...++.+.+
T Consensus 302 ~~~l~~~Fk 310 (419)
T KOG0116|consen 302 PAELEEVFK 310 (419)
T ss_pred HHHHHHHHh
Confidence 444555544
No 184
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.37 E-value=1.7e+02 Score=19.80 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred ceeEEEEeecCCCCccceEEEEEeCC
Q psy222 116 KVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 116 ~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.|.+|+|..-...++.++||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778877766568899999999976
No 185
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.00 E-value=76 Score=21.80 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=27.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc-CCceeEEEEeecCCCCccceEEEEEeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAE-YGKVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.-|||++++..+.+.-...+-+. .+.-.-+-+..+ ....||.|-.+..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 46999999988876544444444 233222222222 3346788887754
No 186
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.96 E-value=1.4e+02 Score=19.94 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCC
Q psy222 131 SKRYGFLEYDCEKACLAAIRALNR 154 (225)
Q Consensus 131 ~kg~afV~F~~~~~a~~Al~~l~g 154 (225)
.+||-||+=.+..++..|+..+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 699999999999999999876654
No 187
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.28 E-value=75 Score=17.95 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhcCC
Q psy222 100 KNSREADLEQAFAEYG 115 (225)
Q Consensus 100 ~~~te~~L~~~F~~~G 115 (225)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998754
No 188
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.05 E-value=2e+02 Score=20.05 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=19.4
Q ss_pred ceeEEEEeecCCCCccceEEEEEeCC
Q psy222 116 KVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 116 ~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.|++|+|..-...|+.++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36777776554568889999999976
No 189
>KOG4213|consensus
Probab=20.17 E-value=1.3e+02 Score=23.69 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=36.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC-CceeEEEEeecCC-CCccceEEEEEeCCHHHHHHHHHH
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEY-GKVISVRVVRDFV-TGHSKRYGFLEYDCEKACLAAIRA 151 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~-~g~~kg~afV~F~~~~~a~~Al~~ 151 (225)
+++|.. .++++|..+..-. |.+..|..-.... ....+|-.||.|...+.|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456654 5666665554322 6777776554321 125678899999999999988764
No 190
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.04 E-value=97 Score=25.56 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh
Q psy222 90 TRTLFIGRLNKNSREADLEQAFA 112 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~ 112 (225)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45689999999999999988886
Done!