Query psy222
Match_columns 225
No_of_seqs 240 out of 2537
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:15:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 6.8E-23 2.3E-27 145.3 11.9 83 87-169 16-98 (99)
2 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.5E-22 1.2E-26 152.7 13.1 86 86-171 35-120 (156)
3 3pgw_S U1-70K; protein-RNA com 99.9 1.4E-21 4.9E-26 172.4 16.0 102 86-187 98-199 (437)
4 2dnz_A Probable RNA-binding pr 99.9 1.6E-21 5.5E-26 136.7 13.1 84 88-171 3-86 (95)
5 3s8s_A Histone-lysine N-methyl 99.9 1.2E-21 4.1E-26 141.5 12.0 82 88-169 4-85 (110)
6 2dgs_A DAZ-associated protein 99.9 2.5E-21 8.5E-26 136.8 13.3 88 86-174 6-93 (99)
7 1u6f_A Tcubp1, RNA-binding pro 99.9 2.4E-21 8.1E-26 145.2 13.8 88 85-172 37-124 (139)
8 3ex7_B RNA-binding protein 8A; 99.9 9.1E-22 3.1E-26 145.1 11.1 89 85-173 17-105 (126)
9 2cqd_A RNA-binding region cont 99.9 4.9E-21 1.7E-25 139.2 13.8 87 85-172 12-98 (116)
10 3q2s_C Cleavage and polyadenyl 99.9 5.2E-22 1.8E-26 161.2 9.4 81 89-169 67-149 (229)
11 2cpz_A CUG triplet repeat RNA- 99.9 3.8E-21 1.3E-25 139.6 12.8 88 86-173 21-108 (115)
12 1whw_A Hypothetical protein ri 99.9 4.1E-21 1.4E-25 135.6 12.6 86 87-172 5-90 (99)
13 2dnm_A SRP46 splicing factor; 99.9 2.7E-21 9.2E-26 137.6 11.5 88 85-172 8-95 (103)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.7E-21 5.7E-26 138.4 10.3 88 87-174 9-96 (102)
15 2fy1_A RNA-binding motif prote 99.9 5.7E-21 1.9E-25 139.1 13.3 84 87-171 4-87 (116)
16 1x5s_A Cold-inducible RNA-bind 99.9 3.9E-21 1.3E-25 136.5 12.1 87 86-172 8-94 (102)
17 1x5u_A Splicing factor 3B subu 99.9 4.6E-21 1.6E-25 136.8 12.5 87 85-171 10-96 (105)
18 1x5t_A Splicing factor 3B subu 99.9 2.5E-21 8.6E-26 135.9 10.8 85 88-172 3-88 (96)
19 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.7E-21 1.3E-25 132.5 11.3 83 88-170 4-86 (87)
20 2cq0_A Eukaryotic translation 99.9 4E-21 1.4E-25 136.7 11.8 88 85-172 10-97 (103)
21 1x4h_A RNA-binding protein 28; 99.9 6.8E-21 2.3E-25 137.2 13.1 89 85-173 10-104 (111)
22 2lxi_A RNA-binding protein 10; 99.9 4.9E-22 1.7E-26 138.7 6.5 83 90-172 1-85 (91)
23 2dng_A Eukaryotic translation 99.9 6.4E-21 2.2E-25 135.7 12.4 86 85-172 10-95 (103)
24 2cpf_A RNA binding motif prote 99.9 5E-21 1.7E-25 134.9 11.6 86 88-173 3-91 (98)
25 1wi8_A EIF-4B, eukaryotic tran 99.9 6E-21 2E-25 136.1 12.0 86 85-172 10-96 (104)
26 2dgo_A Cytotoxic granule-assoc 99.9 2.3E-20 7.7E-25 135.4 15.1 88 85-172 10-97 (115)
27 2d9p_A Polyadenylate-binding p 99.9 1E-20 3.5E-25 134.6 13.0 87 85-173 10-96 (103)
28 3md1_A Nuclear and cytoplasmic 99.9 7.7E-21 2.6E-25 129.8 11.7 82 90-171 1-82 (83)
29 2cph_A RNA binding motif prote 99.9 1.1E-20 3.7E-25 135.3 13.0 88 85-172 10-99 (107)
30 1p27_B RNA-binding protein 8A; 99.9 6.8E-21 2.3E-25 136.1 11.8 87 85-171 18-104 (106)
31 2do4_A Squamous cell carcinoma 99.9 1.3E-20 4.5E-25 133.3 13.0 86 85-171 12-97 (100)
32 2dgp_A Bruno-like 4, RNA bindi 99.8 9.4E-21 3.2E-25 135.4 11.6 87 85-171 8-97 (106)
33 2cq3_A RNA-binding protein 9; 99.8 3E-20 1E-24 132.2 14.1 91 85-177 10-100 (103)
34 2cpe_A RNA-binding protein EWS 99.8 9.7E-21 3.3E-25 137.0 11.5 88 85-172 10-105 (113)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.1E-21 3.1E-25 130.0 10.8 82 87-168 4-85 (85)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-20 1E-24 132.6 13.8 87 86-173 11-100 (105)
37 2lkz_A RNA-binding protein 5; 99.8 1.6E-21 5.6E-26 137.0 7.1 83 87-169 6-94 (95)
38 3p5t_L Cleavage and polyadenyl 99.8 1.8E-21 6.3E-26 135.3 6.9 82 91-172 2-85 (90)
39 2x1f_A MRNA 3'-END-processing 99.8 1.3E-20 4.5E-25 132.4 11.1 83 89-171 1-83 (96)
40 2la6_A RNA-binding protein FUS 99.8 2.1E-20 7.2E-25 132.1 12.2 84 85-168 8-99 (99)
41 2cqc_A Arginine/serine-rich sp 99.8 1.8E-20 6.2E-25 131.2 11.4 85 85-169 10-94 (95)
42 2dhg_A TRNA selenocysteine ass 99.8 2.1E-20 7.1E-25 133.1 11.7 85 87-172 6-92 (104)
43 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-20 4.8E-25 135.4 10.8 87 85-171 21-107 (110)
44 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-20 6.1E-25 131.0 10.8 84 85-168 11-94 (94)
45 4f25_A Polyadenylate-binding p 99.8 2.4E-20 8.3E-25 135.5 11.3 80 90-171 5-84 (115)
46 2do0_A HnRNP M, heterogeneous 99.8 1.3E-19 4.4E-24 131.1 15.0 85 85-170 10-94 (114)
47 2div_A TRNA selenocysteine ass 99.8 2.1E-20 7.3E-25 131.9 10.6 84 87-170 6-94 (99)
48 2dh8_A DAZ-associated protein 99.8 1.8E-20 6.3E-25 133.7 10.1 87 85-172 11-97 (105)
49 3ns6_A Eukaryotic translation 99.8 4.2E-21 1.4E-25 136.2 6.6 82 89-170 5-93 (100)
50 2jrs_A RNA-binding protein 39; 99.8 3.2E-20 1.1E-24 133.5 11.3 87 85-171 21-107 (108)
51 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.5E-20 2.2E-24 130.4 12.7 86 85-172 10-95 (103)
52 4a8x_A RNA-binding protein wit 99.8 3.7E-20 1.3E-24 127.7 10.7 82 89-170 3-85 (88)
53 2dgu_A Heterogeneous nuclear r 99.8 9E-20 3.1E-24 129.8 12.9 79 87-173 8-86 (103)
54 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-19 3.7E-24 129.3 13.0 86 86-173 11-96 (103)
55 1x4a_A Splicing factor, argini 99.8 1.1E-19 3.8E-24 130.6 13.1 83 86-171 18-100 (109)
56 3ulh_A THO complex subunit 4; 99.8 7.8E-20 2.7E-24 130.8 12.0 82 86-168 25-106 (107)
57 2kxn_B Transformer-2 protein h 99.8 3.3E-20 1.1E-24 137.6 10.4 87 85-171 41-127 (129)
58 2cpi_A CCR4-NOT transcription 99.8 3.3E-20 1.1E-24 133.9 9.8 86 87-172 12-103 (111)
59 3n9u_C Cleavage and polyadenyl 99.8 4.4E-20 1.5E-24 141.3 10.9 82 89-170 54-137 (156)
60 2dgv_A HnRNP M, heterogeneous 99.8 9.2E-20 3.1E-24 126.9 11.6 83 87-171 5-87 (92)
61 1x4b_A Heterogeneous nuclear r 99.8 4.7E-20 1.6E-24 134.0 10.5 83 89-172 26-108 (116)
62 2khc_A Testis-specific RNP-typ 99.8 3.2E-20 1.1E-24 135.2 9.5 83 86-168 36-118 (118)
63 1x4c_A Splicing factor, argini 99.8 1.2E-19 4E-24 130.4 12.3 78 87-171 12-94 (108)
64 3s7r_A Heterogeneous nuclear r 99.8 8.5E-20 2.9E-24 125.8 11.1 81 86-167 7-87 (87)
65 2dgw_A Probable RNA-binding pr 99.8 1.4E-19 4.8E-24 125.8 12.2 84 86-172 6-89 (91)
66 2dgx_A KIAA0430 protein; RRM d 99.8 7.8E-20 2.7E-24 128.6 10.9 82 87-171 6-91 (96)
67 2ywk_A Putative RNA-binding pr 99.8 6.6E-20 2.3E-24 128.3 10.3 83 86-169 12-94 (95)
68 2fc8_A NCL protein; structure 99.8 1.4E-19 4.8E-24 128.4 11.9 84 85-171 10-93 (102)
69 3ucg_A Polyadenylate-binding p 99.8 8.6E-20 2.9E-24 126.1 10.4 80 90-170 6-85 (89)
70 2cqp_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 130.7 8.4 85 86-170 11-95 (98)
71 1wez_A HnRNP H', FTP-3, hetero 99.8 6.4E-20 2.2E-24 130.6 10.0 83 86-171 11-93 (102)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1E-19 3.5E-24 140.3 11.9 88 85-172 67-154 (165)
73 1sjq_A Polypyrimidine tract-bi 99.8 6.5E-20 2.2E-24 130.7 9.5 83 86-174 12-96 (105)
74 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 3.9E-24 133.4 11.1 80 90-170 36-115 (124)
75 2ek1_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 129.9 7.7 82 88-169 13-94 (95)
76 2m2b_A RNA-binding protein 10; 99.8 2.9E-20 9.8E-25 138.2 7.8 84 87-171 20-109 (131)
77 2dnq_A RNA-binding protein 4B; 99.8 2.3E-19 7.9E-24 124.5 11.8 78 87-172 5-82 (90)
78 2fc9_A NCL protein; structure 99.8 1.4E-19 4.8E-24 128.2 10.9 82 86-171 11-92 (101)
79 1p1t_A Cleavage stimulation fa 99.8 7.7E-20 2.6E-24 130.1 9.6 83 89-171 7-89 (104)
80 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 4E-24 130.7 10.1 87 85-172 20-106 (109)
81 1s79_A Lupus LA protein; RRM, 99.8 7.1E-20 2.4E-24 130.6 8.9 81 87-169 8-88 (103)
82 2cq4_A RNA binding motif prote 99.8 2.1E-20 7.1E-25 135.4 6.0 82 89-171 24-105 (114)
83 2kn4_A Immunoglobulin G-bindin 99.8 2.2E-19 7.6E-24 137.2 12.0 86 86-171 66-151 (158)
84 2dis_A Unnamed protein product 99.8 2.3E-19 8E-24 128.7 11.3 87 87-173 5-95 (109)
85 1wg5_A Heterogeneous nuclear r 99.8 2.7E-19 9.1E-24 127.7 11.5 85 86-172 11-96 (104)
86 2cq1_A PTB-like protein L; RRM 99.8 4.2E-19 1.4E-23 126.0 12.4 84 85-174 10-95 (101)
87 1x4d_A Matrin 3; structural ge 99.8 1.3E-19 4.3E-24 128.9 9.5 81 85-171 10-93 (102)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.5E-20 1.5E-24 130.7 6.9 85 85-171 14-99 (100)
89 2cpx_A Hypothetical protein FL 99.8 5.1E-20 1.8E-24 133.5 7.2 87 87-173 22-108 (115)
90 1x4e_A RNA binding motif, sing 99.8 2.6E-20 8.7E-25 127.9 5.2 80 88-167 3-82 (85)
91 2dgt_A RNA-binding protein 30; 99.8 5.7E-19 2E-23 123.0 12.1 79 86-172 6-84 (92)
92 2kt5_A RNA and export factor-b 99.8 5.8E-19 2E-23 129.7 12.8 86 86-172 31-116 (124)
93 2mss_A Protein (musashi1); RNA 99.8 6.9E-20 2.4E-24 122.7 7.1 75 92-167 1-75 (75)
94 1why_A Hypothetical protein ri 99.8 3.9E-19 1.3E-23 125.0 11.2 80 86-171 13-94 (97)
95 1wex_A Hypothetical protein (r 99.8 4.4E-19 1.5E-23 126.7 11.5 81 86-172 11-93 (104)
96 1x5o_A RNA binding motif, sing 99.8 5E-19 1.7E-23 128.1 12.0 83 87-170 22-112 (114)
97 2cpd_A Apobec-1 stimulating pr 99.8 8.9E-19 3.1E-23 123.6 12.9 80 85-172 10-91 (99)
98 3r27_A HnRNP L, heterogeneous 99.8 3.1E-19 1.1E-23 126.0 10.3 81 85-171 16-98 (100)
99 2lea_A Serine/arginine-rich sp 99.8 9.8E-20 3.4E-24 136.1 8.1 88 85-172 42-129 (135)
100 2err_A Ataxin-2-binding protei 99.8 3.1E-19 1.1E-23 128.4 10.2 85 85-171 24-108 (109)
101 2cpj_A Non-POU domain-containi 99.8 4.9E-19 1.7E-23 125.0 11.0 81 85-171 10-90 (99)
102 2cpy_A RNA-binding protein 12; 99.8 3.1E-20 1.1E-24 134.7 4.7 83 87-171 12-95 (114)
103 1x4g_A Nucleolysin TIAR; struc 99.8 6.1E-19 2.1E-23 126.7 11.4 80 87-172 22-101 (109)
104 2ad9_A Polypyrimidine tract-bi 99.8 4E-19 1.4E-23 129.5 10.5 84 85-174 26-111 (119)
105 2kvi_A Nuclear polyadenylated 99.8 3.1E-19 1.1E-23 125.4 9.3 78 87-172 7-85 (96)
106 2lcw_A RNA-binding protein FUS 99.7 5.3E-21 1.8E-25 139.1 0.0 85 87-171 4-96 (116)
107 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1E-19 3.5E-24 122.4 6.2 76 91-167 1-76 (77)
108 2ki2_A SS-DNA binding protein 99.8 4.6E-20 1.6E-24 127.9 4.4 81 91-172 2-82 (90)
109 2cqh_A IGF-II mRNA-binding pro 99.8 5.5E-19 1.9E-23 123.2 9.9 80 87-173 5-86 (93)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.3E-19 1.5E-23 132.7 9.9 83 85-167 58-140 (140)
111 2nlw_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 126.9 9.3 84 85-170 10-100 (105)
112 2e5j_A Methenyltetrahydrofolat 99.8 7.7E-19 2.6E-23 123.6 10.5 82 85-171 14-95 (97)
113 2hgn_A Heterogeneous nuclear r 99.8 5.8E-20 2E-24 137.8 4.9 82 87-171 43-124 (139)
114 2db1_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 129.7 9.0 82 87-170 14-98 (118)
115 2wbr_A GW182, gawky, LD47780P; 99.8 4.3E-19 1.5E-23 121.5 8.5 74 89-168 6-79 (89)
116 1wel_A RNA-binding protein 12; 99.8 1.6E-19 5.4E-24 132.9 6.8 83 87-170 22-104 (124)
117 3beg_B Splicing factor, argini 99.8 5E-19 1.7E-23 128.6 9.1 76 88-170 14-94 (115)
118 1wf1_A RNA-binding protein RAL 99.8 1.2E-18 4.2E-23 125.3 11.0 77 87-171 24-101 (110)
119 1x4f_A Matrin 3; structural ge 99.8 5.6E-19 1.9E-23 127.4 9.0 82 87-174 22-106 (112)
120 2dnp_A RNA-binding protein 14; 99.8 1.8E-18 6E-23 120.0 11.0 78 86-171 5-82 (90)
121 2a3j_A U1 small nuclear ribonu 99.8 1.2E-18 4.1E-23 128.7 10.6 84 85-171 24-111 (127)
122 1fj7_A Nucleolin RBD1, protein 99.8 7.9E-20 2.7E-24 129.5 4.0 84 86-171 13-96 (101)
123 2hgl_A HNRPF protein, heteroge 99.8 4.3E-19 1.5E-23 132.6 8.1 83 86-170 40-125 (136)
124 2jvr_A Nucleolar protein 3; RN 99.8 5.6E-19 1.9E-23 127.5 8.4 80 87-170 25-105 (111)
125 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-18 7.1E-23 118.2 10.3 77 86-168 8-85 (85)
126 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.3E-23 123.2 9.3 76 91-171 1-76 (101)
127 3lqv_A PRE-mRNA branch site pr 99.8 2.8E-18 9.4E-23 124.3 10.8 81 87-170 5-85 (115)
128 2la4_A Nuclear and cytoplasmic 99.8 1.2E-18 4.2E-23 123.3 8.6 77 88-170 25-101 (101)
129 2e5g_A U6 snRNA-specific termi 99.8 3.5E-18 1.2E-22 119.5 10.8 79 88-172 6-84 (94)
130 2krb_A Eukaryotic translation 99.8 6.4E-19 2.2E-23 119.9 6.7 72 91-164 2-80 (81)
131 1x5p_A Negative elongation fac 99.8 7.1E-18 2.4E-22 118.6 12.3 81 85-173 10-90 (97)
132 2jvo_A Nucleolar protein 3; nu 99.8 2.4E-18 8.1E-23 123.6 9.9 79 85-171 26-104 (108)
133 1iqt_A AUF1, heterogeneous nuc 99.8 3.5E-19 1.2E-23 119.2 5.2 75 92-167 1-75 (75)
134 2xnq_A Nuclear polyadenylated 99.8 4.7E-18 1.6E-22 119.7 11.1 78 85-170 17-95 (97)
135 1nu4_A U1A RNA binding domain; 99.8 1.2E-18 4E-23 122.4 7.8 82 87-171 5-90 (97)
136 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-18 4.1E-23 122.1 7.7 80 87-171 13-92 (96)
137 2f3j_A RNA and export factor b 99.8 2.9E-18 9.9E-23 133.8 10.6 85 86-171 84-168 (177)
138 2lmi_A GRSF-1, G-rich sequence 99.8 5.4E-19 1.9E-23 126.7 6.0 83 86-170 7-92 (107)
139 4f02_A Polyadenylate-binding p 99.8 4.2E-18 1.4E-22 136.4 11.8 83 87-169 12-94 (213)
140 1l3k_A Heterogeneous nuclear r 99.8 3E-19 1E-23 140.3 4.6 86 87-173 101-186 (196)
141 2dnn_A RNA-binding protein 12; 99.8 2.5E-18 8.7E-23 123.7 8.9 77 90-169 16-92 (109)
142 2g4b_A Splicing factor U2AF 65 99.8 2E-18 7E-23 132.8 8.9 118 44-167 54-171 (172)
143 1whx_A Hypothetical protein ri 99.8 5.7E-18 1.9E-22 122.2 10.3 77 89-171 9-85 (111)
144 2dha_A FLJ20171 protein; RRM d 99.7 2.2E-18 7.7E-23 126.5 7.3 80 88-169 21-104 (123)
145 2i2y_A Fusion protein consists 99.7 5.3E-18 1.8E-22 128.6 9.6 81 85-170 68-148 (150)
146 2e44_A Insulin-like growth fac 99.7 6.6E-18 2.3E-22 118.4 9.4 81 87-171 12-93 (96)
147 3egn_A RNA-binding protein 40; 99.7 6.6E-19 2.3E-23 132.6 4.4 84 85-171 40-131 (143)
148 2qfj_A FBP-interacting repress 99.7 1.7E-17 5.8E-22 132.2 12.6 86 88-173 123-208 (216)
149 1fxl_A Paraneoplastic encephal 99.7 2.2E-17 7.4E-22 126.1 12.2 82 90-171 2-83 (167)
150 3md3_A Nuclear and cytoplasmic 99.7 2.6E-17 9E-22 125.5 12.5 84 85-168 82-165 (166)
151 2cq2_A Hypothetical protein LO 99.7 1E-17 3.4E-22 121.0 9.3 81 85-171 20-107 (114)
152 2xs2_A Deleted in azoospermia- 99.7 4.9E-18 1.7E-22 120.4 7.6 81 88-171 7-87 (102)
153 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-17 5.4E-22 127.2 10.9 83 89-171 2-84 (168)
154 2hgm_A HNRPF protein, heteroge 99.7 5.1E-18 1.8E-22 125.0 7.6 81 87-170 39-121 (126)
155 2j8a_A Histone-lysine N-methyl 99.7 6.7E-18 2.3E-22 123.2 8.0 78 91-168 3-94 (136)
156 1wg1_A KIAA1579 protein, homol 99.7 1.4E-17 4.7E-22 115.1 8.7 76 88-170 3-78 (88)
157 3zzy_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 120.7 11.2 78 90-172 28-108 (130)
158 2yh0_A Splicing factor U2AF 65 99.7 4.2E-17 1.4E-21 128.2 11.6 84 88-171 112-195 (198)
159 1sjr_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 125.1 10.8 78 90-171 46-125 (164)
160 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.7E-22 127.6 8.2 83 85-167 84-168 (168)
161 2diu_A KIAA0430 protein; struc 99.7 4.1E-17 1.4E-21 112.8 9.4 75 87-171 5-85 (96)
162 4f02_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 130.7 10.7 81 89-171 102-182 (213)
163 2cjk_A Nuclear polyadenylated 99.7 2E-17 6.8E-22 126.6 7.9 81 89-170 86-166 (167)
164 1l3k_A Heterogeneous nuclear r 99.7 6E-17 2E-21 127.1 10.7 85 86-171 9-93 (196)
165 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.6E-22 114.6 6.3 78 88-172 3-80 (88)
166 3d2w_A TAR DNA-binding protein 99.7 5.4E-17 1.8E-21 112.5 8.9 77 86-171 7-85 (89)
167 2e5i_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 117.6 10.7 75 92-172 27-104 (124)
168 1fxl_A Paraneoplastic encephal 99.7 2.2E-17 7.5E-22 126.0 7.2 81 87-167 85-167 (167)
169 2dnl_A Cytoplasmic polyadenyla 99.7 1E-16 3.4E-21 116.1 10.1 79 87-168 5-86 (114)
170 3tyt_A Heterogeneous nuclear r 99.7 8E-17 2.7E-21 128.4 10.4 79 88-171 2-81 (205)
171 2bz2_A Negative elongation fac 99.7 8.6E-17 2.9E-21 117.8 9.7 80 85-172 34-113 (121)
172 3md3_A Nuclear and cytoplasmic 99.7 1.3E-16 4.3E-21 121.7 10.8 80 91-171 1-80 (166)
173 2hzc_A Splicing factor U2AF 65 99.7 6E-17 2.1E-21 111.2 8.0 72 88-166 4-86 (87)
174 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.7E-21 127.5 10.1 82 89-170 27-108 (216)
175 2pe8_A Splicing factor 45; RRM 99.7 5.5E-16 1.9E-20 110.7 10.9 83 87-169 5-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.7 3.4E-16 1.2E-20 120.4 10.6 81 87-168 92-175 (175)
177 3nmr_A Cugbp ELAV-like family 99.7 5E-16 1.7E-20 119.5 11.2 83 89-171 2-89 (175)
178 3pgw_A U1-A; protein-RNA compl 99.6 7.8E-16 2.7E-20 127.8 11.6 83 86-171 5-91 (282)
179 2voo_A Lupus LA protein; RNA-b 99.6 6.5E-16 2.2E-20 122.0 10.4 78 90-169 109-186 (193)
180 1fje_B Nucleolin RBD12, protei 99.6 3.9E-16 1.3E-20 120.5 8.9 80 86-170 95-174 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.6 3.5E-16 1.2E-20 127.0 8.9 80 87-172 131-231 (240)
182 2cjk_A Nuclear polyadenylated 99.6 2.8E-16 9.7E-21 120.2 7.7 79 89-169 2-80 (167)
183 2adc_A Polypyrimidine tract-bi 99.6 8.7E-16 3E-20 124.1 9.1 81 85-170 29-110 (229)
184 2ghp_A U4/U6 snRNA-associated 99.6 9.2E-16 3.2E-20 128.0 9.2 83 87-170 207-291 (292)
185 2dit_A HIV TAT specific factor 99.6 5.1E-15 1.7E-19 106.7 11.5 82 86-171 11-103 (112)
186 3pgw_A U1-A; protein-RNA compl 99.6 2.5E-15 8.4E-20 124.8 11.1 78 86-168 203-281 (282)
187 3smz_A Protein raver-1, ribonu 99.6 4.7E-15 1.6E-19 123.2 11.9 84 88-171 93-176 (284)
188 3smz_A Protein raver-1, ribonu 99.6 4E-15 1.4E-19 123.6 11.3 85 86-171 180-265 (284)
189 3tyt_A Heterogeneous nuclear r 99.6 2.5E-15 8.7E-20 119.7 8.3 78 88-167 121-204 (205)
190 1qm9_A Polypyrimidine tract-bi 99.6 2.2E-15 7.7E-20 118.6 7.5 77 90-171 3-80 (198)
191 1qm9_A Polypyrimidine tract-bi 99.6 4.5E-15 1.5E-19 116.8 9.0 79 87-170 117-197 (198)
192 2adc_A Polypyrimidine tract-bi 99.6 8.3E-15 2.8E-19 118.4 10.4 79 87-170 148-228 (229)
193 3sde_A Paraspeckle component 1 99.6 6.2E-15 2.1E-19 121.4 9.7 79 85-169 17-95 (261)
194 1fje_B Nucleolin RBD12, protei 99.6 7E-16 2.4E-20 119.0 3.3 84 86-171 9-92 (175)
195 3v4m_A Splicing factor U2AF 65 99.5 1.9E-14 6.6E-19 102.6 9.1 82 88-169 3-96 (105)
196 3sde_A Paraspeckle component 1 99.5 3.3E-14 1.1E-18 117.1 10.7 84 87-171 93-180 (261)
197 1jmt_A Splicing factor U2AF 35 99.5 4.1E-15 1.4E-19 105.9 4.4 72 95-167 20-103 (104)
198 2ghp_A U4/U6 snRNA-associated 99.5 2E-14 6.8E-19 119.8 9.3 83 88-171 115-198 (292)
199 3ue2_A Poly(U)-binding-splicin 99.5 4.3E-14 1.5E-18 102.8 9.8 81 89-169 19-108 (118)
200 2g4b_A Splicing factor U2AF 65 99.5 2.4E-14 8.1E-19 109.9 8.7 75 89-170 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 4E-14 1.4E-18 111.0 8.6 76 89-171 3-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.3E-13 1.1E-17 95.3 11.6 65 100-171 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.2E-18 117.0 8.9 78 85-168 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3.6E-12 1.2E-16 92.0 9.9 78 88-169 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 2.2E-11 7.5E-16 83.3 7.8 74 87-169 4-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 2.8E-11 9.6E-16 87.8 8.4 79 85-169 13-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.4E-10 4.9E-15 79.7 4.8 73 87-168 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.4E-09 4.7E-14 87.1 9.0 68 102-169 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 5.3E-07 1.8E-11 63.2 8.6 74 87-166 18-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.8 0.00037 1.3E-08 48.3 10.4 73 89-170 7-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.7 0.00023 7.9E-09 48.6 8.4 78 91-168 2-86 (91)
212 1wey_A Calcipressin 1; structu 97.7 0.0001 3.4E-09 51.4 6.4 76 89-170 4-84 (104)
213 1whv_A Poly(A)-specific ribonu 97.5 0.00031 1.1E-08 48.2 7.0 55 90-153 16-70 (100)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00019 6.4E-09 49.4 4.9 53 92-153 8-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0019 6.3E-08 46.2 7.6 71 89-167 23-94 (119)
216 2l08_A Regulator of nonsense t 97.0 0.0011 3.9E-08 45.5 5.1 79 90-168 9-94 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.5 0.0015 5.2E-08 57.4 3.4 54 91-150 54-107 (464)
218 2kn4_A Immunoglobulin G-bindin 96.3 0.0049 1.7E-07 45.8 4.9 36 119-156 2-37 (158)
219 3p3d_A Nucleoporin 53; structu 95.9 0.008 2.7E-07 43.5 4.3 77 91-169 8-98 (132)
220 2i2y_A Fusion protein consists 95.5 0.0077 2.6E-07 44.4 3.0 40 129-169 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 92.2 0.41 1.4E-05 42.6 7.8 55 91-154 441-495 (507)
222 2g0c_A ATP-dependent RNA helic 81.4 3.2 0.00011 26.3 5.1 68 92-168 2-75 (76)
223 4eyt_A Telomerase associated p 39.8 80 0.0028 20.9 8.6 58 87-152 9-66 (129)
224 4e8u_A Putative uncharacterize 38.5 91 0.0031 23.3 6.3 56 92-150 14-81 (172)
225 3fut_A Dimethyladenosine trans 32.2 36 0.0012 27.2 3.4 34 90-124 110-143 (271)
226 3uzu_A Ribosomal RNA small sub 27.8 23 0.00077 28.5 1.5 35 91-125 115-149 (279)
227 2i9x_A Putative septation prot 25.5 1.1E+02 0.0036 20.1 4.2 26 116-141 5-30 (87)
228 2ia9_A Putative septation prot 22.4 1.3E+02 0.0044 20.3 4.2 26 116-141 5-30 (100)
229 3tqs_A Ribosomal RNA small sub 22.0 25 0.00086 27.8 0.7 34 92-125 98-131 (255)
230 4bby_A Alkyldihydroxyacetoneph 21.7 1.1E+02 0.0039 27.6 5.2 56 97-153 350-409 (658)
231 3ftd_A Dimethyladenosine trans 21.4 51 0.0017 25.8 2.4 33 91-123 96-128 (249)
232 2i9z_A Putative septation prot 21.0 1.4E+02 0.0049 20.2 4.3 26 116-141 5-30 (105)
233 3ts2_A Protein LIN-28 homolog 20.7 12 0.00042 27.2 -1.2 27 106-140 3-29 (148)
234 3pgw_S U1-70K; protein-RNA com 20.4 8.7 0.0003 33.2 -2.5 14 107-120 9-22 (437)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=145.26 Aligned_cols=83 Identities=31% Similarity=0.462 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
...+++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=3.5e-22 Score=152.74 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++++..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998754
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=1.4e-21 Score=172.38 Aligned_cols=102 Identities=35% Similarity=0.759 Sum_probs=92.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+.+|++||.|+.|.|+.++.+++++|||||+|.+.++|++||..||++.|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCC
Q psy222 166 FECGRVLPGWKPRRLGGGWGGN 187 (225)
Q Consensus 166 ~a~~~~~~~~~~~r~~gg~gg~ 187 (225)
++.++...+|.+.+.+||+|++
T Consensus 178 ~a~~~~~~~~~~~~~ggG~gg~ 199 (437)
T 3pgw_S 178 VERGRTVKGWRPRRLGGGLGGT 199 (437)
T ss_pred EeCCCCCCCCCCCCcCCCCCCC
Confidence 9999888888877665555443
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=136.66 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8765
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=141.48 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=136.82 Aligned_cols=88 Identities=20% Similarity=0.406 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+ |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred EeeCCCCCC
Q psy222 166 FECGRVLPG 174 (225)
Q Consensus 166 ~a~~~~~~~ 174 (225)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998765443
No 7
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=145.22 Aligned_cols=88 Identities=27% Similarity=0.430 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.+++++..
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 8
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=9.1e-22 Score=145.08 Aligned_cols=89 Identities=31% Similarity=0.477 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.++.++..+
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 9
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=139.20 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||+.|++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4455778999999999999999999999999999999999988999999999999999999999999998 899999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99986543
No 10
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=5.2e-22 Score=161.19 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYG--KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..++|||+||++++++++|+++|++|| .|+.|.|++++.+++++|||||+|.+.++|++||+.||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=3.8e-21 Score=139.58 Aligned_cols=88 Identities=28% Similarity=0.380 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q psy222 166 FECGRVLP 173 (225)
Q Consensus 166 ~a~~~~~~ 173 (225)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=135.62 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=81.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 988654
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=137.62 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.+++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987543
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-21 Score=138.40 Aligned_cols=88 Identities=22% Similarity=0.452 Sum_probs=82.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q psy222 167 ECGRVLPG 174 (225)
Q Consensus 167 a~~~~~~~ 174 (225)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98866443
No 15
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=139.14 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
++++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98754
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=136.48 Aligned_cols=87 Identities=30% Similarity=0.477 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9997653
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.6e-21 Score=136.81 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9998754
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=135.90 Aligned_cols=85 Identities=29% Similarity=0.472 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEE-EEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISV-RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.+.++|||+|||+.+++++|+++|++||.|..| .|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=132.53 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCC
Q psy222 168 CGR 170 (225)
Q Consensus 168 ~~~ 170 (225)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=136.74 Aligned_cols=88 Identities=20% Similarity=0.401 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.8e-21 Score=137.19 Aligned_cols=89 Identities=27% Similarity=0.380 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC------CCccC
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN------RQNFQ 158 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~------g~~l~ 158 (225)
....+.++|||+|||+.+++++|+++|.+||.|..|.|++++.++..+|||||+|.+.++|++||..|| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445677899999999999999999999999999999999999899999999999999999999999999 99999
Q ss_pred CcEEEEEEeeCCCCC
Q psy222 159 GSEIIVDFECGRVLP 173 (225)
Q Consensus 159 g~~l~V~~a~~~~~~ 173 (225)
|+.|+|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-22 Score=138.66 Aligned_cols=83 Identities=17% Similarity=0.338 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC-CCccCCcEEEEEEe
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN-RQNFQGSEIIVDFE 167 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~-g~~l~g~~l~V~~a 167 (225)
+++|||+|||+++|+++|+++|++|| .|..|+|++++.++.++|||||+|.+.++|++||+.|+ +..|+|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999774 56799999999999
Q ss_pred eCCCC
Q psy222 168 CGRVL 172 (225)
Q Consensus 168 ~~~~~ 172 (225)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 23
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=6.4e-21 Score=135.70 Aligned_cols=86 Identities=27% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++|| |..|.|+.++.+++++|||||+|.+.++|++|| .||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455678999999999999999999999997 999999999989999999999999999999999 79999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 24
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=134.93 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCC---CCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV---TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. ++..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 25
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=136.10 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCC-CccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVT-GHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....+.++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ ++.+|||||+|.+.++|++|| .||+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4456778999999999999999999999999 999999999887 999999999999999999999 8999999999999
Q ss_pred EEEeeCCCC
Q psy222 164 VDFECGRVL 172 (225)
Q Consensus 164 V~~a~~~~~ 172 (225)
|.++.++..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.3e-20 Score=135.41 Aligned_cols=88 Identities=28% Similarity=0.496 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 27
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=134.58 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++..++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999988 8899999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.++.++..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999886543
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=7.7e-21 Score=129.78 Aligned_cols=82 Identities=27% Similarity=0.527 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
+++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q psy222 170 RV 171 (225)
Q Consensus 170 ~~ 171 (225)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=135.28 Aligned_cols=88 Identities=16% Similarity=0.435 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeec-CCCCccceEEEEEeCCHHHHHHHHHHh-CCCccCCcEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRD-FVTGHSKRYGFLEYDCEKACLAAIRAL-NRQNFQGSEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~kg~afV~F~~~~~a~~Al~~l-~g~~l~g~~l 162 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +.++..+|||||+|.+.++|++||..| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567789999999999999999999999999999999998 788999999999999999999999999 9999999999
Q ss_pred EEEEeeCCCC
Q psy222 163 IVDFECGRVL 172 (225)
Q Consensus 163 ~V~~a~~~~~ 172 (225)
+|.++.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987653
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=136.14 Aligned_cols=87 Identities=31% Similarity=0.468 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 44556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998764
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=133.33 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++.+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998764
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=9.4e-21 Score=135.42 Aligned_cols=87 Identities=31% Similarity=0.434 Sum_probs=81.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc---CCcE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF---QGSE 161 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l---~g~~ 161 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||+.||+..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4456778999999999999999999999999999999999988999999999999999999999999999987 8999
Q ss_pred EEEEEeeCCC
Q psy222 162 IIVDFECGRV 171 (225)
Q Consensus 162 l~V~~a~~~~ 171 (225)
|+|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998754
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3e-20 Score=132.15 Aligned_cols=91 Identities=24% Similarity=0.428 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+.. ..++||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456778999999999999999999999999999999998853 37999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCC
Q psy222 165 DFECGRVLPGWKP 177 (225)
Q Consensus 165 ~~a~~~~~~~~~~ 177 (225)
.++.++....+.+
T Consensus 88 ~~a~~~~~~~~~~ 100 (103)
T 2cq3_A 88 NNATARVMTNSGP 100 (103)
T ss_dssp EECCSSCCCCCSS
T ss_pred EEcccCCCCCCCC
Confidence 9999877655443
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=136.95 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=81.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVI--------SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
....+.++|||+|||+.+++++|+++|++||.|. .|.|+.++.+++.+|||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456778999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred cCCcEEEEEEeeCCCC
Q psy222 157 FQGSEIIVDFECGRVL 172 (225)
Q Consensus 157 l~g~~l~V~~a~~~~~ 172 (225)
|.|+.|+|.+++++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987553
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=9.1e-21 Score=129.99 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ee
Q psy222 167 EC 168 (225)
Q Consensus 167 a~ 168 (225)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=3e-20 Score=132.55 Aligned_cols=87 Identities=29% Similarity=0.428 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC---cEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG---SEI 162 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g---~~l 162 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++..+|||||+|.+.++|++||+.||+..|.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999998 999
Q ss_pred EEEEeeCCCCC
Q psy222 163 IVDFECGRVLP 173 (225)
Q Consensus 163 ~V~~a~~~~~~ 173 (225)
+|.++.++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=137.04 Aligned_cols=83 Identities=17% Similarity=0.337 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc--eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC----ccCCc
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGK--VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ----NFQGS 160 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~----~l~g~ 160 (225)
...-.+|||+|||+.+|+++|+++|++||. |..|+|++|+.+++++|||||+|.+.++|++||+.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345579999999999999999999999995 679999999999999999999999999999999999997 48999
Q ss_pred EEEEEEeeC
Q psy222 161 EIIVDFECG 169 (225)
Q Consensus 161 ~l~V~~a~~ 169 (225)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.8e-21 Score=135.28 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYG--KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.+|||+|||+++++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy222 169 GRVL 172 (225)
Q Consensus 169 ~~~~ 172 (225)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7553
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.3e-20 Score=132.40 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 40
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=132.08 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS--------VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
....+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.+++.+|||||+|.+.++|++||+.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 55677899999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred cCCcEEEEEEee
Q psy222 157 FQGSEIIVDFEC 168 (225)
Q Consensus 157 l~g~~l~V~~a~ 168 (225)
|.|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=131.17 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=133.14 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-CCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc-cCCcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAE-YGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN-FQGSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~-l~g~~l~V 164 (225)
..+.++|||+|||+.+++++|+++|++ ||.|..|.|+.++ ++..+|||||+|.+.++|++||+.|++.. |.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99987543
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.4e-20 Score=135.44 Aligned_cols=87 Identities=29% Similarity=0.496 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998754
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=131.01 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEee
Q psy222 165 DFEC 168 (225)
Q Consensus 165 ~~a~ 168 (225)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.4e-20 Score=135.51 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
..+|||+|||+.+++++|+++|++||.|..|+|++++ +.++|||||+|.+.++|++||+.|++..|+|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 45799999999999999999999999999999999999986
Q ss_pred CC
Q psy222 170 RV 171 (225)
Q Consensus 170 ~~ 171 (225)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=131.14 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++ +++.++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345567899999999999999999999999999999999997 6999999999999999999999999999999999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
+++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998753
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=131.91 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcee-EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE----
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVI-SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE---- 161 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~---- 161 (225)
..+.++|||+|||+.+++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|++||+.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEeeCC
Q psy222 162 IIVDFECGR 170 (225)
Q Consensus 162 l~V~~a~~~ 170 (225)
|+|.++++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998763
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=133.74 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++||.. ++..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456778999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=4.2e-21 Score=136.18 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC-cE
Q psy222 89 PTRTLFIGRLNK------NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG-SE 161 (225)
Q Consensus 89 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g-~~ 161 (225)
..++|||+|||+ .+++++|+++|++||.|..|.|++++.|++++|||||+|.+.++|++||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEEeeCC
Q psy222 162 IIVDFECGR 170 (225)
Q Consensus 162 l~V~~a~~~ 170 (225)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=133.47 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998753
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-20 Score=130.41 Aligned_cols=86 Identities=23% Similarity=0.440 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++. ..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456778999999999999999999999999999999998853 36899999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987553
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=127.66 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCc-cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGH-SKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~-~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
..++|||+|||+++++++|+++|++||.|..|.|+.+..++. .+|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999876665 8999999999999999999999999999999999999
Q ss_pred eCC
Q psy222 168 CGR 170 (225)
Q Consensus 168 ~~~ 170 (225)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 53
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=9e-20 Score=129.77 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4467899999999999999999999999999999987 55999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy222 167 ECGRVLP 173 (225)
Q Consensus 167 a~~~~~~ 173 (225)
+.++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9876543
No 54
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=129.27 Aligned_cols=86 Identities=24% Similarity=0.416 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. +++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999998 4779999999999
Q ss_pred EeeCCCCC
Q psy222 166 FECGRVLP 173 (225)
Q Consensus 166 ~a~~~~~~ 173 (225)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886543
No 55
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=130.58 Aligned_cols=83 Identities=17% Similarity=0.409 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +..++||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 4578999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
+++++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998754
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=7.8e-20 Score=130.82 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++ +++.+|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45677899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred Eee
Q psy222 166 FEC 168 (225)
Q Consensus 166 ~a~ 168 (225)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=3.3e-20 Score=137.56 Aligned_cols=87 Identities=25% Similarity=0.403 Sum_probs=81.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
+++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 58
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-20 Score=133.93 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhcCCceeEEEEeecCCCC---ccceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q psy222 87 TDPTRTLFIGRLNKNSREADLE---QAFAEYGKVISVRVVRDFVTG---HSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~~g---~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~ 160 (225)
....++|||+|||+.+++++|+ ++|++||.|..|.|+.++.++ .++|||||+|.+.++|++||+.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4456799999999999999999 999999999999999887644 5569999999999999999999999999999
Q ss_pred EEEEEEeeCCCC
Q psy222 161 EIIVDFECGRVL 172 (225)
Q Consensus 161 ~l~V~~a~~~~~ 172 (225)
.|+|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998653
No 59
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=141.28 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYG--KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..++|||+|||+++++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||..||+..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q psy222 167 ECGR 170 (225)
Q Consensus 167 a~~~ 170 (225)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=9.2e-20 Score=126.86 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++..+|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999974 788999999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98754
No 61
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=133.96 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++||.. ++..|.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 346999999999999999999999999999999999988999999999999999999999997 9999999999999998
Q ss_pred CCCC
Q psy222 169 GRVL 172 (225)
Q Consensus 169 ~~~~ 172 (225)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7653
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.2e-20 Score=135.25 Aligned_cols=83 Identities=29% Similarity=0.424 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+++++++|+++|++||.|..|.|++++.+++.+|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eee
Q psy222 166 FEC 168 (225)
Q Consensus 166 ~a~ 168 (225)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 63
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=130.39 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC-----cE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG-----SE 161 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g-----~~ 161 (225)
....++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||++.|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999865 799999999999999999999999999 99
Q ss_pred EEEEEeeCCC
Q psy222 162 IIVDFECGRV 171 (225)
Q Consensus 162 l~V~~a~~~~ 171 (225)
|+|+++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998854
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=8.5e-20 Score=125.79 Aligned_cols=81 Identities=20% Similarity=0.417 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 35577899999999999999999999999999999999998899999999999999999999997 58889999999998
Q ss_pred Ee
Q psy222 166 FE 167 (225)
Q Consensus 166 ~a 167 (225)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=125.78 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....++|||+|||+.+++++|+++|+.| .|..|.|+++ .+++++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 8999999999 689999999999999999999999 99999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987643
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.8e-20 Score=128.55 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLE----QAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
..+.++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999988755 8899999999999999999999999999999
Q ss_pred EEEEeeCCC
Q psy222 163 IVDFECGRV 171 (225)
Q Consensus 163 ~V~~a~~~~ 171 (225)
+|.+++++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999998754
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=128.33 Aligned_cols=83 Identities=28% Similarity=0.435 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++..+|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34566899999999999999999999999999999999997 48899999999999999999999999999999999999
Q ss_pred EeeC
Q psy222 166 FECG 169 (225)
Q Consensus 166 ~a~~ 169 (225)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 68
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=128.39 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|+.|+ .|.++.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456778999999999999999999999773 7788888889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.+++++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998754
No 69
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=8.6e-20 Score=126.15 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q psy222 170 R 170 (225)
Q Consensus 170 ~ 170 (225)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 70
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=130.75 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 71
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=130.57 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....++|||+|||+.+++++|+++|++|| +..|.|++++ +++++|||||+|.+.++|++||+ +|+..|+++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345668999999999999999999999999 5599999997 89999999999999999999996 79999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987643
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1e-19 Score=140.34 Aligned_cols=88 Identities=28% Similarity=0.482 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99987553
No 73
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-20 Score=130.69 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR--QNFQGSEII 163 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~ 163 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567789999999999999999999999999999999865 79999999999999999998864 789999999
Q ss_pred EEEeeCCCCCC
Q psy222 164 VDFECGRVLPG 174 (225)
Q Consensus 164 V~~a~~~~~~~ 174 (225)
|.+++++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998866543
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.2e-19 Score=133.37 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|+|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999999889999999999999999999999 7999999999999999886
Q ss_pred C
Q psy222 170 R 170 (225)
Q Consensus 170 ~ 170 (225)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=3.2e-20 Score=129.92 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred eC
Q psy222 168 CG 169 (225)
Q Consensus 168 ~~ 169 (225)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=138.16 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE--EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC----ccCCc
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS--VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ----NFQGS 160 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~----~l~g~ 160 (225)
..+.++|||+|||+++++++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|++||..||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEeeCCC
Q psy222 161 EIIVDFECGRV 171 (225)
Q Consensus 161 ~l~V~~a~~~~ 171 (225)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 77
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=124.49 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 67999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
++++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987653
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=128.22 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.| .|+.+ .+++.+|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45577899999999999999999999999976 56666 588899999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
+++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=130.11 Aligned_cols=83 Identities=36% Similarity=0.627 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 754
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=130.66 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..+ +..|.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 44556789999999999999999999999999999999999889999999999999999999999976 58999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.1e-20 Score=130.56 Aligned_cols=81 Identities=14% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+++++++|+++|++||.|..|.|++++. +.++|||||+|.+.++|++||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999986 9999999999999999999999 899999999999998
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=135.44 Aligned_cols=82 Identities=32% Similarity=0.399 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++..+|||||+|.+.++|++|| .||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3469999999999999999999999999999999999988999999999999999999999 899999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 83
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.2e-19 Score=137.21 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++.++.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998754
No 84
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=128.74 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEe-ecCCCCccceEEEEEeCCHHHHHHHHHHhC--CCccCCcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGK-VISVRVV-RDFVTGHSKRYGFLEYDCEKACLAAIRALN--RQNFQGSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~~~g~~kg~afV~F~~~~~a~~Al~~l~--g~~l~g~~l 162 (225)
..+.++|||+|||+.+++++|+++|.+||. |..|.|+ .++.++..+|||||+|.+.++|++||..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEEEeeCCCCC
Q psy222 163 IVDFECGRVLP 173 (225)
Q Consensus 163 ~V~~a~~~~~~ 173 (225)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999986543
No 85
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=127.67 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS-VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. ++..|+++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 6899999999999999999999997 999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++..+..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876543
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-19 Score=126.04 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC--CCccCCcEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN--RQNFQGSEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~--g~~l~g~~l 162 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|+ +..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34567789999999999999999999999999999988864 7999999999999999999774 678999999
Q ss_pred EEEEeeCCCCCC
Q psy222 163 IVDFECGRVLPG 174 (225)
Q Consensus 163 ~V~~a~~~~~~~ 174 (225)
+|.+++.+....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999876554
No 87
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=128.88 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC--ccCCcE
Q psy222 85 SSTDPTRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ--NFQGSE 161 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~--~l~g~~ 161 (225)
....+.++|||+|||+ .+++++|+++|++||.|..|.|+++ ++||||+|.+.++|++||+.|++. .|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455788999999999 9999999999999999999999865 589999999999999999999865 599999
Q ss_pred EEEEEeeCCC
Q psy222 162 IIVDFECGRV 171 (225)
Q Consensus 162 l~V~~a~~~~ 171 (225)
|+|.+++.+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998643
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=130.73 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecC-CCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDF-VTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
......++|||+|||+++++++|+++|++|| |..|.|+.++ .+++++|||||+|.+.++|++|| .|++..|.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456778999999999999999999999999 9999999997 58999999999999999999999 7999999999999
Q ss_pred EEEeeCCC
Q psy222 164 VDFECGRV 171 (225)
Q Consensus 164 V~~a~~~~ 171 (225)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 89
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-20 Score=133.45 Aligned_cols=87 Identities=17% Similarity=0.365 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|.+||.|..|.+..+..+++.+|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999984332222222788899999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy222 167 ECGRVLP 173 (225)
Q Consensus 167 a~~~~~~ 173 (225)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-20 Score=127.87 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999998877654
No 91
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=122.98 Aligned_cols=79 Identities=29% Similarity=0.578 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 35577899999999999999999999999999999997 3499999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
+++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987543
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=5.8e-19 Score=129.72 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++.+|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
++.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987543
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=6.9e-20 Score=122.72 Aligned_cols=75 Identities=19% Similarity=0.396 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++ |++..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 8999999999999875
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=125.04 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC--CcEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ--GSEII 163 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~--g~~l~ 163 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.++++ ++||||+|.+.++|++|++.||+..|. ++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998754 789999999999999999999999999 99999
Q ss_pred EEEeeCCC
Q psy222 164 VDFECGRV 171 (225)
Q Consensus 164 V~~a~~~~ 171 (225)
|.+++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 95
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-19 Score=126.65 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ--NFQGSEII 163 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~--~l~g~~l~ 163 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|++|++.|++. .|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3457789999999999999999999999999999998854 789999999999999999988764 59999999
Q ss_pred EEEeeCCCC
Q psy222 164 VDFECGRVL 172 (225)
Q Consensus 164 V~~a~~~~~ 172 (225)
|.+++.+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999987654
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=128.06 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc--------C
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF--------Q 158 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l--------~ 158 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++..+|||||+|.+.++|++||..||+..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4466899999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CcEEEEEEeeCC
Q psy222 159 GSEIIVDFECGR 170 (225)
Q Consensus 159 g~~l~V~~a~~~ 170 (225)
+++|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999864
No 97
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.9e-19 Score=123.63 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEY--GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
....+.++|||+|||+.+++++|+++|++| |.|..|.++ ++||||+|.+.++|++||..||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 445567899999999999999999999999 999998875 6799999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q psy222 163 IVDFECGRVL 172 (225)
Q Consensus 163 ~V~~a~~~~~ 172 (225)
+|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 98
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=125.99 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc--cCCcEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN--FQGSEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~--l~g~~l 162 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.+++. +|||||+|.+.++|.+|+..|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 44567899999999999999999999999999999999853 7899999999999999999999876 789999
Q ss_pred EEEEeeCCC
Q psy222 163 IVDFECGRV 171 (225)
Q Consensus 163 ~V~~a~~~~ 171 (225)
.|.+++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998753
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9.8e-20 Score=136.06 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=81.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++++...
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987543
No 100
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=128.44 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +..+|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445677899999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998753
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=124.96 Aligned_cols=81 Identities=25% Similarity=0.495 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44567789999999999999999999999999999999854 789999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998754
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-20 Score=134.70 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCce-eEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKV-ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
..+.++|||+|||+.+++++|+++|+.||.| ..|.|++++ +++.+|||||+|.+.++|++||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 889999998 999999999999999999999996 9999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998643
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=126.70 Aligned_cols=80 Identities=18% Similarity=0.388 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||..|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987654
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=129.55 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC--CccCCcEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR--QNFQGSEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g--~~l~g~~l 162 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34557789999999999999999999999999999999875 79999999999999999998874 68999999
Q ss_pred EEEEeeCCCCCC
Q psy222 163 IVDFECGRVLPG 174 (225)
Q Consensus 163 ~V~~a~~~~~~~ 174 (225)
+|.+++++....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998866543
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=125.39 Aligned_cols=78 Identities=24% Similarity=0.519 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45788999999999 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy222 166 FECGRVL 172 (225)
Q Consensus 166 ~a~~~~~ 172 (225)
+++++..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987553
No 106
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-21 Score=139.06 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVIS--------VRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ 158 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~ 158 (225)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++..+|||||+|.+.++|++||..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 899999888999999999999999999999999999999
Q ss_pred CcEEEEEEeeCCC
Q psy222 159 GSEIIVDFECGRV 171 (225)
Q Consensus 159 g~~l~V~~a~~~~ 171 (225)
|+.|+|.++.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998754
No 107
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-19 Score=122.40 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999998 9999999999986
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.6e-20 Score=127.94 Aligned_cols=81 Identities=27% Similarity=0.491 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.+ |++|+..||+..|.|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 99999999999999999999999875
Q ss_pred CC
Q psy222 171 VL 172 (225)
Q Consensus 171 ~~ 172 (225)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=123.23 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC-CccCCcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGK-VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR-QNFQGSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g-~~l~g~~l~V 164 (225)
..+.++|||+|||+++++++|+++|++||. |..+.+. .+|||||+|.+.++|++||+.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6655553 478999999999999999999999 9999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.+++++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=132.72 Aligned_cols=83 Identities=24% Similarity=0.516 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++.+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q psy222 165 DFE 167 (225)
Q Consensus 165 ~~a 167 (225)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=126.89 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC
Q psy222 85 SSTDPTRTLFIGRLNKNS------READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ 158 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~ 158 (225)
......++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|++||..|||..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 789999999999999999988 358999999999999999999999999999999
Q ss_pred Cc-EEEEEEeeCC
Q psy222 159 GS-EIIVDFECGR 170 (225)
Q Consensus 159 g~-~l~V~~a~~~ 170 (225)
|+ .|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 112
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=123.57 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
......++|||+|||+.+++++|+++|++||.|. +.++++ ..+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999996 677654 47899999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.+++++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998754
No 113
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=5.8e-20 Score=137.80 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
....++|||+|||+++++++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .+|+..|+++.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 44668999999999999999999999999 77999999974 999999999999999999999 6899999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88654
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4e-19 Score=129.68 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGK---VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....++|||+|||+++++++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||++.|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 446789999999999999999999999999 89999999975 9999999999999999999999 999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998753
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.3e-19 Score=121.51 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.+..|||+||++.++|++|+++|.+||.|.+++++. ++|||||+|.++++|++|++.||+..|.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456899999999999999999999999999999975 48999999999999999999999999999999999985
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=132.86 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|..||.|..+.++.+..+++++|||||+|.+.++|++||. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999999887667666799999999999999999999999 999999999999999
Q ss_pred eeCC
Q psy222 167 ECGR 170 (225)
Q Consensus 167 a~~~ 170 (225)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9753
No 117
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=5e-19 Score=128.55 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE-----E
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE-----I 162 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~-----l 162 (225)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999855 89999999999999999999999999988 7
Q ss_pred EEEEeeCC
Q psy222 163 IVDFECGR 170 (225)
Q Consensus 163 ~V~~a~~~ 170 (225)
+|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776653
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.2e-18 Score=125.31 Aligned_cols=77 Identities=27% Similarity=0.507 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKN-SREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....++|||+|||+. +++++|+++|++||.|..|.| .++||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345589999999999 999999999999999999998 37899999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++++..
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998543
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=127.43 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC--CccCCcEEE
Q psy222 87 TDPTRTLFIGRLNKN-SREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR--QNFQGSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~ 163 (225)
..+.++|||+|||++ +++++|+++|++||.|..|.|++. +|||||+|.+.++|++|++.|++ ..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999999743 79999999999999999998864 569999999
Q ss_pred EEEeeCCCCCC
Q psy222 164 VDFECGRVLPG 174 (225)
Q Consensus 164 V~~a~~~~~~~ 174 (225)
|.+++.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998765443
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=119.97 Aligned_cols=78 Identities=29% Similarity=0.486 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999997 3499999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998753
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=128.74 Aligned_cols=84 Identities=15% Similarity=0.356 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLE----QAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~ 160 (225)
....+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++.+|||||+|.+.++|+.||..|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345567899999999999999876 6999999999988753 677899999999999999999999999999999
Q ss_pred EEEEEEeeCCC
Q psy222 161 EIIVDFECGRV 171 (225)
Q Consensus 161 ~l~V~~a~~~~ 171 (225)
.|+|.+++.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998643
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-20 Score=129.50 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999888 666776788899999999999999999999 99999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
+++++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998754
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=4.3e-19 Score=132.63 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGK---VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
.....++|||+|||+++|+++|+++|++||. |..|.|++++. ++++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999986 9999999999999999999999 99999999999
Q ss_pred EEEEeeCC
Q psy222 163 IVDFECGR 170 (225)
Q Consensus 163 ~V~~a~~~ 170 (225)
+|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998653
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.6e-19 Score=127.46 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....++|||+|||+++++++|+++|++|| .|..|.|+.. ..+|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 8999988633 378999999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=118.17 Aligned_cols=77 Identities=22% Similarity=0.451 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL-NRQNFQGSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V 164 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|++|+..| ++..|.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 789999999999999999988 999999999999
Q ss_pred EEee
Q psy222 165 DFEC 168 (225)
Q Consensus 165 ~~a~ 168 (225)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=123.23 Aligned_cols=76 Identities=25% Similarity=0.542 Sum_probs=71.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++|++.|++..|.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 5899999999999999999999999999999999999875
Q ss_pred C
Q psy222 171 V 171 (225)
Q Consensus 171 ~ 171 (225)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.8e-18 Score=124.32 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +..+|||||+|.+.++|++|+..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 44589999999999999999999999999999999999
Q ss_pred eeCC
Q psy222 167 ECGR 170 (225)
Q Consensus 167 a~~~ 170 (225)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9863
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=123.33 Aligned_cols=77 Identities=26% Similarity=0.426 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..||+..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999999999983 4799999999999999999999999999999999998
Q ss_pred eCC
Q psy222 168 CGR 170 (225)
Q Consensus 168 ~~~ 170 (225)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 129
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=119.49 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+++++++|+++|++||.|..| +.++.+++ ||||+|.+.++|++||. ||+..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 55555665 99999999999999999 9999999999999988
Q ss_pred eCCCC
Q psy222 168 CGRVL 172 (225)
Q Consensus 168 ~~~~~ 172 (225)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76543
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=119.89 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc-EEE
Q psy222 91 RTLFIGRLNKNS------READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS-EII 163 (225)
Q Consensus 91 ~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~-~l~ 163 (225)
++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|++||..||+..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 35889999999999999999999999999999999 887
Q ss_pred E
Q psy222 164 V 164 (225)
Q Consensus 164 V 164 (225)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-18 Score=118.58 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|| .+++++|+++|++||.|..|.|. ..+|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557789999996 89999999999999999999985 35789999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q psy222 165 DFECGRVLP 173 (225)
Q Consensus 165 ~~a~~~~~~ 173 (225)
.++.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 132
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.4e-18 Score=123.63 Aligned_cols=79 Identities=16% Similarity=0.392 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+..||+..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 335567899999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.+++++.
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9998754
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.5e-19 Score=119.18 Aligned_cols=75 Identities=19% Similarity=0.364 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||+ +++..|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999999 5899999999999875
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.7e-18 Score=119.70 Aligned_cols=78 Identities=23% Similarity=0.495 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||..||+..|.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4466789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 135
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.2e-18 Score=122.38 Aligned_cols=82 Identities=18% Similarity=0.421 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLE----QAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
..+.++|||+|||+.+++++|+ ++|++||.|..|.++. ++..+|||||+|.+.++|++|+..||+..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577899999999999999999 9999999999999873 56788999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q psy222 163 IVDFECGRV 171 (225)
Q Consensus 163 ~V~~a~~~~ 171 (225)
+|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=122.14 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|++||.|..+ ..++..+|||||+|.+.++|++||..|++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988766 23788999999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98754
No 137
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=133.79 Aligned_cols=85 Identities=18% Similarity=0.346 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997643
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=126.69 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGK---VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
.....++|||+|||+++++++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|++||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4557789999999999999999999999998 89999999986 9999999999999999999999 99999999999
Q ss_pred EEEEeeCC
Q psy222 163 IVDFECGR 170 (225)
Q Consensus 163 ~V~~a~~~ 170 (225)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998753
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.2e-18 Score=136.36 Aligned_cols=83 Identities=24% Similarity=0.464 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|++..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy222 167 ECG 169 (225)
Q Consensus 167 a~~ 169 (225)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 140
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3e-19 Score=140.33 Aligned_cols=86 Identities=16% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999995 89999999999999
Q ss_pred eeCCCCC
Q psy222 167 ECGRVLP 173 (225)
Q Consensus 167 a~~~~~~ 173 (225)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9886643
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=123.68 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|+.| .|..|.|+.++ .++++|||||+|.+.++|++|| .||+..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 89999999997 4999999999999999999999 5899999999999998865
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=2e-18 Score=132.80 Aligned_cols=118 Identities=22% Similarity=0.299 Sum_probs=91.9
Q ss_pred CccccccccCccccCCCCCcccCcccHHHHHHHhccCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy222 44 YWYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVV 123 (225)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~ 123 (225)
.|+.|....++..+..+++..+.... +...+..........++|||+|||+.+++++|+++|++||.|..|.++
T Consensus 54 afV~f~~~~~A~~A~~~~~~~~~g~~------i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~ 127 (172)
T 2g4b_A 54 AFLEFRSVDETTQAMAFDGIIFQGQS------LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV 127 (172)
T ss_dssp EEEEESSHHHHHHHGGGTTCEETTEE------CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHhCCcEecCce------eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEE
Confidence 46666655444444444444443321 111111122334457899999999999999999999999999999999
Q ss_pred ecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 124 RDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 124 ~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.++.++.++|||||+|.+.++|++|+..||+..|+|+.|.|++|
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 128 KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99889999999999999999999999999999999999999987
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=122.21 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
..++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|++||+.||+..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998874 47899999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 644
No 144
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=126.54 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCce----eEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKV----ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
.+.++|||+|||+++++++|+++|++||.| ..|.|+.+. +++++|||||+|.+.++|++||+. |++.|.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999875 689999985 899999999999999999999995 99999999999
Q ss_pred EEEeeC
Q psy222 164 VDFECG 169 (225)
Q Consensus 164 V~~a~~ 169 (225)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998865
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=5.3e-18 Score=128.57 Aligned_cols=81 Identities=27% Similarity=0.547 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||..||+..|.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999876 4899999999999999999999999999999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
.++.++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999875
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=118.35 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEE-EEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV-RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
....++|||+|||+.+++++|+++|++||.|..| .|+.++.++ .|||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 588776443 39999999999999999999999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998764
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=6.6e-19 Score=132.56 Aligned_cols=84 Identities=25% Similarity=0.399 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEE--------EEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV--------RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v--------~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
....+.++|||+|||+.+++++|+++|++||.|..| .+. .+++.+|||||+|.+.++|++||..||+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346678999999999999999999999999998764 222 368899999999999999999999999999
Q ss_pred cCCcEEEEEEeeCCC
Q psy222 157 FQGSEIIVDFECGRV 171 (225)
Q Consensus 157 l~g~~l~V~~a~~~~ 171 (225)
|.|+.|+|.++++..
T Consensus 117 ~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 117 LFGKPMVVQFARSAR 131 (143)
T ss_dssp ETTEECEEEECCCSC
T ss_pred eCCcEEEEEECCCCC
Confidence 999999999998643
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.7e-17 Score=132.20 Aligned_cols=86 Identities=23% Similarity=0.498 Sum_probs=81.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||..||+..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy222 168 CGRVLP 173 (225)
Q Consensus 168 ~~~~~~ 173 (225)
.++..+
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 886543
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=2.2e-17 Score=126.06 Aligned_cols=82 Identities=29% Similarity=0.450 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CC
Q psy222 170 RV 171 (225)
Q Consensus 170 ~~ 171 (225)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.6e-17 Score=125.48 Aligned_cols=84 Identities=30% Similarity=0.574 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 44566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEee
Q psy222 165 DFEC 168 (225)
Q Consensus 165 ~~a~ 168 (225)
.+|+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 151
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=121.01 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=72.0
Q ss_pred CCCCCCCeEEE--cCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc-----
Q psy222 85 SSTDPTRTLFI--GRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF----- 157 (225)
Q Consensus 85 ~~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l----- 157 (225)
....++++||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34557789999 779999999999999999999999988642 78999999999999999999999988
Q ss_pred CCcEEEEEEeeCCC
Q psy222 158 QGSEIIVDFECGRV 171 (225)
Q Consensus 158 ~g~~l~V~~a~~~~ 171 (225)
.+++|.|.++...+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 68899999998644
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=4.9e-18 Score=120.38 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++..+|||||+|.+.++|++||. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 355799999999999999999999999999999999998 99999999999999999999999 899999999999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8654
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.6e-17 Score=127.22 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=5.1e-18 Score=125.03 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCcee--EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVI--SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....++|||+|||+.+++++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 4456899999999999999999999999 577 899999985 99999999999999999999994 779999999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988653
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.7e-18 Score=123.21 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=71.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCC----HHH----HHHHHH--HhCCCc
Q psy222 91 RTLFIGRL----NKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC----EKA----CLAAIR--ALNRQN 156 (225)
Q Consensus 91 ~~l~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~----~~~----a~~Al~--~l~g~~ 156 (225)
..|||+|| |+.+++.+|+.+|++||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 888888 789999
Q ss_pred cCCcEEEEEEee
Q psy222 157 FQGSEIIVDFEC 168 (225)
Q Consensus 157 l~g~~l~V~~a~ 168 (225)
|+|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.4e-17 Score=115.07 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+.+++++|+++|++| .|..|.|. +.+|||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356799999999999999999999999 99999884 46899999999999999999999999999999999998
Q ss_pred eCC
Q psy222 168 CGR 170 (225)
Q Consensus 168 ~~~ 170 (225)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=3.6e-17 Score=120.73 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEE
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRY-GFLEYDCEKACLAAIRALNRQNFQG--SEIIVDF 166 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~-afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~ 166 (225)
--.|||+||++.+++++|+++|++||.|.+|.|+... +|| |||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3478899999999999999999999999999888642 678 9999999999999999999999988 8999999
Q ss_pred eeCCCC
Q psy222 167 ECGRVL 172 (225)
Q Consensus 167 a~~~~~ 172 (225)
+++...
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987543
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=4.2e-17 Score=128.19 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=3.6e-17 Score=125.14 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEEe
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG--SEIIVDFE 167 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~a 167 (225)
..+|||+||++.+++++|+++|++||.|.+|.|.... .++||||+|.+.++|++|++.|||..|.+ +.|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4578999999999999999999999999999987542 57899999999999999999999999965 99999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9764
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=1.4e-17 Score=127.56 Aligned_cols=83 Identities=23% Similarity=0.462 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC--cEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG--SEI 162 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g--~~l 162 (225)
....+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+..|.| ++|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 344567899999999999999999999999999999999998899999999999999999999999999999988 999
Q ss_pred EEEEe
Q psy222 163 IVDFE 167 (225)
Q Consensus 163 ~V~~a 167 (225)
+|.+|
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=112.80 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=66.9
Q ss_pred CCCCCe-EEEcCCCCCCCHHH----HHHHHhcC-CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q psy222 87 TDPTRT-LFIGRLNKNSREAD----LEQAFAEY-GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160 (225)
Q Consensus 87 ~~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~ 160 (225)
.++..+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|++|++.|+|..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345667 99999999999988 55899999 599988 33 9999999999999999999999999999
Q ss_pred EEEEEEeeCCC
Q psy222 161 EIIVDFECGRV 171 (225)
Q Consensus 161 ~l~V~~a~~~~ 171 (225)
+|+|.+|+.+.
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999998754
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=4e-17 Score=130.66 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
...+|||+|||+.+++++|+++|++||.|..|+|+++. +..+|||||+|.+.++|++||+.||+..|+|+.|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999884 5579999999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=2e-17 Score=126.63 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CC
Q psy222 169 GR 170 (225)
Q Consensus 169 ~~ 170 (225)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=6e-17 Score=127.11 Aligned_cols=85 Identities=26% Similarity=0.432 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999988999999999999999999999985 8999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++..+.
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987643
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=114.57 Aligned_cols=78 Identities=15% Similarity=0.334 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45689999999999999999999999999999999865 589999999999999865331 33468999999998
Q ss_pred eCCCC
Q psy222 168 CGRVL 172 (225)
Q Consensus 168 ~~~~~ 172 (225)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.4e-17 Score=112.46 Aligned_cols=77 Identities=18% Similarity=0.421 Sum_probs=63.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc--cCCcEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN--FQGSEII 163 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~--l~g~~l~ 163 (225)
...+..+|||+|||+++++++|+++|++||.|..|.|+++ ++|||||+|.+.++|++ |++.. +.++.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3557789999999999999999999999999999999875 68999999999999883 45655 5699999
Q ss_pred EEEeeCCC
Q psy222 164 VDFECGRV 171 (225)
Q Consensus 164 V~~a~~~~ 171 (225)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998754
No 167
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1e-16 Score=117.59 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceE-EEEEeCCHHHHHHHHHHhCCCccCC--cEEEEEEee
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRY-GFLEYDCEKACLAAIRALNRQNFQG--SEIIVDFEC 168 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~-afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~a~ 168 (225)
.|||+||++.+++++|+++|++||.|..|.|+. + .|| |||+|.+.++|+.|++.|||..|.| +.|+|.+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 468999999999999999999999999999875 2 276 9999999999999999999999987 699999998
Q ss_pred CCCC
Q psy222 169 GRVL 172 (225)
Q Consensus 169 ~~~~ 172 (225)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=2.2e-17 Score=126.03 Aligned_cols=81 Identities=35% Similarity=0.585 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE--EEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE--IIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~--l~V 164 (225)
....++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.||+..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 445689999999999999999999999999999999999889999999999999999999999999999999965 888
Q ss_pred EEe
Q psy222 165 DFE 167 (225)
Q Consensus 165 ~~a 167 (225)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=116.07 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCC---CccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVT---GHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888888766 7999999999999999999999883 36666666
Q ss_pred EEEee
Q psy222 164 VDFEC 168 (225)
Q Consensus 164 V~~a~ 168 (225)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=8e-17 Score=128.42 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 88 DPTRTLFIGRLN-KNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 88 ~~~~~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
.+.++|||+||| +.+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998763 79999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=8.6e-17 Score=117.78 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|| ++++++|+++|++||.|..|.|. ..+|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457789999996 69999999999999999999986 35899999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy222 165 DFECGRVL 172 (225)
Q Consensus 165 ~~a~~~~~ 172 (225)
.++.++..
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987653
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-16 Score=121.66 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 170 (225)
++|||+|||+.+++++|+++|++||.|..|.|+.++ +++.+|||||+|.+.++|++|++.|++..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999987 5778999999999999999999999999999999999998764
Q ss_pred C
Q psy222 171 V 171 (225)
Q Consensus 171 ~ 171 (225)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=6e-17 Score=111.20 Aligned_cols=72 Identities=25% Similarity=0.476 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEY----G-------KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
.+.++|||+|||+.+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998754 799999999999999999 899999
Q ss_pred cCCcEEEEEE
Q psy222 157 FQGSEIIVDF 166 (225)
Q Consensus 157 l~g~~l~V~~ 166 (225)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.1e-16 Score=127.48 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+++++++|+++|+.||.|..|.|++++.++..+|||||+|.+.++|++||+.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35699999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred CC
Q psy222 169 GR 170 (225)
Q Consensus 169 ~~ 170 (225)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=5.5e-16 Score=110.67 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCceeEEEEeecCCC-CccceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q psy222 87 TDPTRTLFIGRLNK-----NSREADLEQAFAEYGKVISVRVVRDFVT-GHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160 (225)
Q Consensus 87 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~ 160 (225)
..++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ ++++||+||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2378999999999999999999988644 67899999999999999999999999999999
Q ss_pred EEEEEEeeC
Q psy222 161 EIIVDFECG 169 (225)
Q Consensus 161 ~l~V~~a~~ 169 (225)
.|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.4e-16 Score=120.36 Aligned_cols=81 Identities=26% Similarity=0.501 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ---GSEII 163 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~---g~~l~ 163 (225)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|.+|++.||+..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999986 6899999999999999999999999998776 39999
Q ss_pred EEEee
Q psy222 164 VDFEC 168 (225)
Q Consensus 164 V~~a~ 168 (225)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=5e-16 Score=119.46 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCC--ccceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTG--HSKRYGFLEYDCEKACLAAIRALNRQNFQ---GSEII 163 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~kg~afV~F~~~~~a~~Al~~l~g~~l~---g~~l~ 163 (225)
+.++|||+|||+.+++++|+++|++||.|..|.|++++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998775 57788
Q ss_pred EEEeeCCC
Q psy222 164 VDFECGRV 171 (225)
Q Consensus 164 V~~a~~~~ 171 (225)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876543
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=7.8e-16 Score=127.79 Aligned_cols=83 Identities=18% Similarity=0.422 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q psy222 86 STDPTRTLFIGRLNKNSREADLE----QAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE 161 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~ 161 (225)
...+.++|||+|||+.+++++|+ ++|++||.|..|.|++ +++.+|||||+|.+.++|++||+.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35678899999999999999976 8999999999999885 6778999999999999999999999999999999
Q ss_pred EEEEEeeCCC
Q psy222 162 IIVDFECGRV 171 (225)
Q Consensus 162 l~V~~a~~~~ 171 (225)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997644
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=6.5e-16 Score=122.04 Aligned_cols=78 Identities=14% Similarity=0.340 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
.++|||+|||+.+++++|+++|++||.|..|.|+++. ++..+|||||+|.+.++|++||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999986 6889999999999999999999865 5699999999998765
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.9e-16 Score=120.47 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|++||.|..+ ..++..+|||||+|.+.++|.+||..||+..|.|+.|+|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34466899999999999999999999999988766 3578899999999999999999999999999999999999
Q ss_pred EeeCC
Q psy222 166 FECGR 170 (225)
Q Consensus 166 ~a~~~ 170 (225)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99875
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.5e-16 Score=127.04 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 87 TDPTRTLFIGRLNKNS---------READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
....++|||+||+..+ ++++|+.+|++||.|..|.|+.. +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999854 79999999999999999999999999
Q ss_pred ------------CCcEEEEEEeeCCCC
Q psy222 158 ------------QGSEIIVDFECGRVL 172 (225)
Q Consensus 158 ------------~g~~l~V~~a~~~~~ 172 (225)
.|+.|.|.||+..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.8e-16 Score=120.15 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
+.++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||.. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999994 678999999998876
Q ss_pred C
Q psy222 169 G 169 (225)
Q Consensus 169 ~ 169 (225)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=8.7e-16 Score=124.15 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 85 SSTDPTRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
....+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999 99999999999999999999999875 78999999999999999999999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|.++...
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999865
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=9.2e-16 Score=127.96 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeecCC-CCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 87 TDPTRTLFIGRLNKN-SREADLEQAFAEYGKVISVRVVRDFV-TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~-~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
..+.++|||+|||+. +++++|+++|+.||.|..|.|+.+.. |+.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999998875 5899999999999999999999 99999999999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-15 Score=106.72 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy222 86 STDPTRTLFIGRLNKNSR-----------EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR 154 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g 154 (225)
...+.++|+|.||..... +++|+++|++||.|..|.| .++ ..+|||||+|.+.++|++|+..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345788999999944432 5799999999999999966 443 3799999999999999999999999
Q ss_pred CccCCcEEEEEEeeCCC
Q psy222 155 QNFQGSEIIVDFECGRV 171 (225)
Q Consensus 155 ~~l~g~~l~V~~a~~~~ 171 (225)
..|+|+.|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999998754
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2.5e-15 Score=124.76 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V 164 (225)
...+.++|||+|||..+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||..||+..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999999664 689999999999999999999999999 999999
Q ss_pred EEee
Q psy222 165 DFEC 168 (225)
Q Consensus 165 ~~a~ 168 (225)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=4.7e-15 Score=123.15 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEe
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFE 167 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 167 (225)
...++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy222 168 CGRV 171 (225)
Q Consensus 168 ~~~~ 171 (225)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 8654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4e-15 Score=123.60 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 86 STDPTRTLFIGRLNKNS-READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
...+.++|||+|||+.+ ++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy222 165 DFECGRV 171 (225)
Q Consensus 165 ~~a~~~~ 171 (225)
.++.++.
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9998754
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=2.5e-15 Score=119.70 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCce--eEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCc----E
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKV--ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS----E 161 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v--~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~----~ 161 (225)
.+.++|||+|||+.+++++|+++|++||.| ..|+++.++ +..+|||||+|.+.++|.+||..||+..|.+. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 899998774 55579999999999999999999999999886 6
Q ss_pred EEEEEe
Q psy222 162 IIVDFE 167 (225)
Q Consensus 162 l~V~~a 167 (225)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=118.61 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=72.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEee
Q psy222 90 TRTLFIGRLNK-NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFEC 168 (225)
Q Consensus 90 ~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 168 (225)
.++|||+|||+ .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998774 7899999999999999999999999999999999998
Q ss_pred CCC
Q psy222 169 GRV 171 (225)
Q Consensus 169 ~~~ 171 (225)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=116.85 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V 164 (225)
..+.++|||+|||+.+++++|+++|+.|| .|..|.|+.+. +|||||+|.+.++|.+|+..||+..|. |+.|+|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 35678999999999999999999999999 99999997642 789999999999999999999999999 999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999864
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=8.3e-15 Score=118.35 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ-GSEIIV 164 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V 164 (225)
..+.++|||+|||+.+++++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+||..||+..|. |+.|+|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34578999999999999999999999999 9999999753 3789999999999999999999999999 999999
Q ss_pred EEeeCC
Q psy222 165 DFECGR 170 (225)
Q Consensus 165 ~~a~~~ 170 (225)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999864
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=6.2e-15 Score=121.44 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q psy222 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 164 (225)
....+.++|||+|||+++++++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34456689999999999999999999999999999999754 789999999999999999999999999999999
Q ss_pred EEeeC
Q psy222 165 DFECG 169 (225)
Q Consensus 165 ~~a~~ 169 (225)
.++.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99865
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=7e-16 Score=119.04 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 86 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
...+.++|||+|||+.+++++|+++|..||.+.. .++.+..++..+|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4557789999999999999999999999998766 333444578889999999999999999995 99999999999999
Q ss_pred EeeCCC
Q psy222 166 FECGRV 171 (225)
Q Consensus 166 ~a~~~~ 171 (225)
++.++.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 988643
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.9e-14 Score=102.61 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCceeEEEEeecCCC--CccceEEEEEeCCHHHHHHHHHHhCCC
Q psy222 88 DPTRTLFIGRL--NKNSR--------EADLEQAFAEYGKVISVRVVRDFVT--GHSKRYGFLEYDCEKACLAAIRALNRQ 155 (225)
Q Consensus 88 ~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~v~~v~i~~~~~~--g~~kg~afV~F~~~~~a~~Al~~l~g~ 155 (225)
.+++.|.|.|+ |..+. +++|+++|++||.|.+|.|++++.+ +..+||+||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 44443 3689999999999999999988754 367999999999999999999999999
Q ss_pred ccCCcEEEEEEeeC
Q psy222 156 NFQGSEIIVDFECG 169 (225)
Q Consensus 156 ~l~g~~l~V~~a~~ 169 (225)
.|+|+.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=3.3e-14 Score=117.09 Aligned_cols=84 Identities=23% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC-CccC---CcEE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR-QNFQ---GSEI 162 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g-~~l~---g~~l 162 (225)
..+..+|||+|||+.+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+||..||+ ..+. +++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 345689999999999999999999999999999999999 4899999999999999999999999955 4444 8999
Q ss_pred EEEEeeCCC
Q psy222 163 IVDFECGRV 171 (225)
Q Consensus 163 ~V~~a~~~~ 171 (225)
.|.++....
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999998643
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=4.1e-15 Score=105.95 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q psy222 95 IGRLNKNSREADLEQAF------------AEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEI 162 (225)
Q Consensus 95 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l 162 (225)
+.+|++.+++++|+++| ++||.|..|.|+++. +++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 999999999999886 57889999999999999999999999999999999
Q ss_pred EEEEe
Q psy222 163 IVDFE 167 (225)
Q Consensus 163 ~V~~a 167 (225)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2e-14 Score=119.82 Aligned_cols=83 Identities=11% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEE
Q psy222 88 DPTRTLFIGRLNKNSREADLEQAFAEYG-KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 166 (225)
...++|||+|||+.+++++|+++|..|| .|..|.|+.+. .+..+|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 99999999886 478899999999999999999999999999999999999
Q ss_pred eeCCC
Q psy222 167 ECGRV 171 (225)
Q Consensus 167 a~~~~ 171 (225)
+.+..
T Consensus 194 a~~~~ 198 (292)
T 2ghp_A 194 SNPLE 198 (292)
T ss_dssp CCCC-
T ss_pred CCCCc
Confidence 88654
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=4.3e-14 Score=102.83 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHHhcCCceeEEEEeecCC----CCccceEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy222 89 PTRTLFIGRLN--KNS---READLEQAFAEYGKVISVRVVRDFV----TGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159 (225)
Q Consensus 89 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~v~~v~i~~~~~----~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g 159 (225)
++++|+|.|+- .++ .+++|++.|++||.|.+|.|++++. ++..+||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999983 222 3689999999999999999998864 45678999999999999999999999999999
Q ss_pred cEEEEEEeeC
Q psy222 160 SEIIVDFECG 169 (225)
Q Consensus 160 ~~l~V~~a~~ 169 (225)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=2.4e-14 Score=109.88 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEY----G-------KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
+.++|||+|||+.+++++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 667776653 3799999999999999999 7999999
Q ss_pred CCcEEEEEEeeCC
Q psy222 158 QGSEIIVDFECGR 170 (225)
Q Consensus 158 ~g~~l~V~~a~~~ 170 (225)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=4e-14 Score=111.04 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEY----G-------KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
..++|||+|||+.+++++|+++|+.| | .|..+.+. ..+|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 55555553 35899999999999999999 7999999
Q ss_pred CCcEEEEEEeeCCC
Q psy222 158 QGSEIIVDFECGRV 171 (225)
Q Consensus 158 ~g~~l~V~~a~~~~ 171 (225)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987643
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-13 Score=95.25 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeCCC
Q psy222 100 KNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRV 171 (225)
Q Consensus 100 ~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~ 171 (225)
..+++++|+++|++||.|..|.|+ ++.+|||||+|.+.++|+.||+.++ .+.++.|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 468999999999999999999998 3569999999999999999999744 4679999999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.5e-13 Score=117.05 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=67.2
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC---C
Q psy222 85 SSTDPTRTLFIGR--LNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ---G 159 (225)
Q Consensus 85 ~~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~---g 159 (225)
....++.+|||+| |++.++|++|+++|++||.|..|.+.. .||||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4467889999999 588999999999999999999987753 3799999999999999999999999873 4
Q ss_pred c--EEEEEEee
Q psy222 160 S--EIIVDFEC 168 (225)
Q Consensus 160 ~--~l~V~~a~ 168 (225)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3.6e-12 Score=92.04 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 88 DPTRTLFIGRLNKNS----------READLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 88 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
.+++.|.|.|+=..- .+++|+++|++||.|.+|.|.++. .+||+||+|.+.++|.+|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467788888873321 135789999999999999997653 489999999999999999999999999
Q ss_pred CCcEEEEEEeeC
Q psy222 158 QGSEIIVDFECG 169 (225)
Q Consensus 158 ~g~~l~V~~a~~ 169 (225)
+|+.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999863
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=83.33 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccC
Q psy222 87 TDPTRTLFIGRLN----KNSRE----ADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQ 158 (225)
Q Consensus 87 ~~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~ 158 (225)
.++..||+|.-++ .++.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3566789998776 23434 5788999999999999999774 8999999999999999 9999999
Q ss_pred CcEEEEEEeeC
Q psy222 159 GSEIIVDFECG 169 (225)
Q Consensus 159 g~~l~V~~a~~ 169 (225)
|+.|+|+++++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.8e-11 Score=87.82 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCC-HHHHHHHHHHhC--CCccCCc
Q psy222 85 SSTDPTRTLFIGRLNKN-SREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC-EKACLAAIRALN--RQNFQGS 160 (225)
Q Consensus 85 ~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~-~~~a~~Al~~l~--g~~l~g~ 160 (225)
..-.+++.|||+||++. +++++|+++|++||.|..|.++.+.. .|||.|.+ ..+|..|+..|+ +..|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 45678899999999999 99999999999999999999987742 59999999 899999999995 6789999
Q ss_pred EEEEEEeeC
Q psy222 161 EIIVDFECG 169 (225)
Q Consensus 161 ~l~V~~a~~ 169 (225)
.+++++...
T Consensus 87 ~~~~evL~G 95 (121)
T 1owx_A 87 EVTWEVLEG 95 (121)
T ss_dssp SEEEEECCH
T ss_pred EEEEEECCC
Confidence 888887653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.4e-10 Score=79.70 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCcc
Q psy222 87 TDPTRTLFIGRLNKN-----SRE----ADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNF 157 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l 157 (225)
.++.-||+|.-++.. +.. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456679999888742 322 4688999999999999999874 9999999999999999 999999
Q ss_pred CCcEEEEEEee
Q psy222 158 QGSEIIVDFEC 168 (225)
Q Consensus 158 ~g~~l~V~~a~ 168 (225)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999854
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.4e-09 Score=87.10 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=60.7
Q ss_pred CCHHHHHHHHhcCCceeEEEEeecC----CCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEEeeC
Q psy222 102 SREADLEQAFAEYGKVISVRVVRDF----VTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169 (225)
Q Consensus 102 ~te~~L~~~F~~~G~v~~v~i~~~~----~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 169 (225)
-.+++|++.|++||.|..+.|+++. .+++.+|++||+|.+.++|.+|+..|||..|.|+.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3467899999999999999998654 3458999999999999999999999999999999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.3e-07 Score=63.24 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-----CceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEY-----GKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE 161 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~ 161 (225)
....++|-|=|||..+++..|+.++..+ |.+..|.+..|. +-|+|+|.+...|-+|.-.|+|..|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3446788888999999999999999999 999999999873 46999999999999999889999999999
Q ss_pred EEEEE
Q psy222 162 IIVDF 166 (225)
Q Consensus 162 l~V~~ 166 (225)
|++--
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00037 Score=48.33 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-----CCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAE-----YGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~-----~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
...+|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+...|++.|+. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4578999999999999999999986 25688887653 4589999999999999983 47889999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|.-..++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9765544
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00023 Score=48.58 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCc--cceEEEEEeCCHHHHHHHHHHhCCCccCCc-----EEE
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGH--SKRYGFLEYDCEKACLAAIRALNRQNFQGS-----EII 163 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~--~kg~afV~F~~~~~a~~Al~~l~g~~l~g~-----~l~ 163 (225)
.+|.|++||+.+||+++.+.+.....+.....+..+.+.. .-.-|||.|.+.+++....+.++|+.|.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999888766666554443322 234689999999999999999999987553 345
Q ss_pred EEEee
Q psy222 164 VDFEC 168 (225)
Q Consensus 164 V~~a~ 168 (225)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.0001 Score=51.37 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q psy222 89 PTRTLFIGRLNKNS-RE----ADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163 (225)
Q Consensus 89 ~~~~l~V~nLp~~~-te----~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 163 (225)
-.++|+|.||+.++ .. +.++++|..|+.+....++..- + =..|.|.+.++|.+|-..||+..|.|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998865 22 5678999999998887777542 2 257999999999999999999999999999
Q ss_pred EEEeeCC
Q psy222 164 VDFECGR 170 (225)
Q Consensus 164 V~~a~~~ 170 (225)
|-++++.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998853
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.53 E-value=0.00031 Score=48.19 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
.+.++| .+|.++...+|.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999 4478888774 69999999999999998763
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00019 Score=49.43 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=46.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
.++| ++|.++...+|..+|+.|| -..|+++.|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999999 5588888774 69999999999999999764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.0019 Score=46.15 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCC-cEEEEEEe
Q psy222 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG-SEIIVDFE 167 (225)
Q Consensus 89 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g-~~l~V~~a 167 (225)
..+-|.|-++|... -..|..+|++||.|++.... + ...+-.|.|.+..+|++||. .||..|.+ -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45678888999885 56678889999999987762 1 24588999999999999999 59999986 55666654
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.99 E-value=0.0011 Score=45.49 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCc--cceEEEEEeCCHHHHHHHHHHhCCCccCCc-----EE
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGH--SKRYGFLEYDCEKACLAAIRALNRQNFQGS-----EI 162 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~--~kg~afV~F~~~~~a~~Al~~l~g~~l~g~-----~l 162 (225)
.-+|.|+.||+.+||+++.+.+...-.+.....+..+.+.+ .-.-|||.|.+.+++..-.+.++|+.|.+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999887776654432222221111111 123589999999999999999999987553 45
Q ss_pred EEEEee
Q psy222 163 IVDFEC 168 (225)
Q Consensus 163 ~V~~a~ 168 (225)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=57.41 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHH
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~ 150 (225)
++|||. +|..+++.+|.++|++||.|..+.+..++ .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 589997 89999999999999999999998887653 4699999999999887765
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.29 E-value=0.0049 Score=45.79 Aligned_cols=36 Identities=8% Similarity=-0.053 Sum_probs=29.6
Q ss_pred EEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 119 SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 119 ~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
.++|+++. .+.+|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 46677774 3689999999999999999998887643
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.94 E-value=0.008 Score=43.51 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=54.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeec------------CCCC-ccceEEEEEeCCHHHHHHHHHHhCCCc
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVIS-VRVVRD------------FVTG-HSKRYGFLEYDCEKACLAAIRALNRQN 156 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~------------~~~g-~~kg~afV~F~~~~~a~~Al~~l~g~~ 156 (225)
.-|.|-+.|...+ ..+.++|++||.|++ +.+... +... ....+-.|.|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4567778887765 556778999999876 221110 0000 134577999999999999999 59999
Q ss_pred cCCcEEEEEEeeC
Q psy222 157 FQGSEIIVDFECG 169 (225)
Q Consensus 157 l~g~~l~V~~a~~ 169 (225)
|.|..|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999887877653
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.52 E-value=0.0077 Score=44.39 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=36.6
Q ss_pred CccceEEEEEeCCHHHHHHHHHHh-CCCccCCcEEEEEEeeC
Q psy222 129 GHSKRYGFLEYDCEKACLAAIRAL-NRQNFQGSEIIVDFECG 169 (225)
Q Consensus 129 g~~kg~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V~~a~~ 169 (225)
...+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 457899999999999999999999 9999999 999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.24 E-value=0.41 Score=42.56 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCC
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNR 154 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g 154 (225)
+.++|+ +|..+...+|.++|+.||. ..|.++.+. .|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 466665 8999999999999999994 477776553 699999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.37 E-value=3.2 Score=26.33 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=41.0
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCc-----eeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Q psy222 92 TLFIG-RLNKNSREADLEQAFAEYGK-----VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165 (225)
Q Consensus 92 ~l~V~-nLp~~~te~~L~~~F~~~G~-----v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 165 (225)
+|||. +--..+...+|..++..-+. |-.|.|. ..|.||+... ..+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45663 22334566677766654433 4456664 2389999874 55778888899999999999988
Q ss_pred Eee
Q psy222 166 FEC 168 (225)
Q Consensus 166 ~a~ 168 (225)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.81 E-value=80 Score=20.90 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=45.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHh
Q psy222 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152 (225)
Q Consensus 87 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l 152 (225)
....+-|-|-|||..+-..++--.....|---.|..+ .|-|.|.|.+.++..-|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3456788889999999988877666777766666665 346899999999999998866
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.46 E-value=91 Score=23.26 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=37.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCceeEEEEeecCCCCccceEEEEEeCC-HHHHHHHHH
Q psy222 92 TLFIGRLNK-N--------SREADLEQAF--AEYGKVISVRVVRDFVTGHSKRYGFLEYDC-EKACLAAIR 150 (225)
Q Consensus 92 ~l~V~nLp~-~--------~te~~L~~~F--~~~G~v~~v~i~~~~~~g~~kg~afV~F~~-~~~a~~Al~ 150 (225)
++.|-|+|. . ....+|++.| +.|..+. |+.+... .-..|++.|.|.. -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 667778886 2 3446889977 8998764 5555553 2357899999985 444555554
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.22 E-value=36 Score=27.25 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy222 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVR 124 (225)
Q Consensus 90 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~ 124 (225)
...+.|+|||+.++..-|..++.. ..+..+.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356789999999999999999977 5555554443
No 226
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.75 E-value=23 Score=28.54 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=26.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeec
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRD 125 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~ 125 (225)
..+.|+|||+.++..-|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999976555655555543
No 227
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.47 E-value=1.1e+02 Score=20.07 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=20.7
Q ss_pred ceeEEEEeecCCCCccceEEEEEeCC
Q psy222 116 KVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 116 ~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.|++|+|..-...++.++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788877666678899999999964
No 228
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.38 E-value=1.3e+02 Score=20.28 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=20.6
Q ss_pred ceeEEEEeecCCCCccceEEEEEeCC
Q psy222 116 KVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 116 ~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.|++|+|..-...++.++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788877665568899999999964
No 229
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.00 E-value=25 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=25.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeec
Q psy222 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRD 125 (225)
Q Consensus 92 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~ 125 (225)
-..|+|||+.++...|..++.....+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 3479999999999999999986655655555543
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.69 E-value=1.1e+02 Score=27.61 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHh----cCCceeEEEEeecCCCCccceEEEEEeCCHHHHHHHHHHhC
Q psy222 97 RLNKNSREADLEQAFA----EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153 (225)
Q Consensus 97 nLp~~~te~~L~~~F~----~~G~v~~v~i~~~~~~g~~kg~afV~F~~~~~a~~Al~~l~ 153 (225)
..+.+.+-.+|..+|- .+|.|+.+.|...+ -.....++++.|.+.+++..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHHH
Confidence 4555566668888883 57788888765543 23345678899999999998887653
No 231
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.36 E-value=51 Score=25.82 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=24.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy222 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVV 123 (225)
Q Consensus 91 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~ 123 (225)
.-+.|+|||+.++..-|..++.....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 347899999999999999998765444444444
No 232
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.97 E-value=1.4e+02 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=20.0
Q ss_pred ceeEEEEeecCCCCccceEEEEEeCC
Q psy222 116 KVISVRVVRDFVTGHSKRYGFLEYDC 141 (225)
Q Consensus 116 ~v~~v~i~~~~~~g~~kg~afV~F~~ 141 (225)
.|++|+|..-...++.++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777776665578889999999964
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.72 E-value=12 Score=27.19 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHhcCCceeEEEEeecCCCCccceEEEEEeC
Q psy222 106 DLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140 (225)
Q Consensus 106 ~L~~~F~~~G~v~~v~i~~~~~~g~~kg~afV~F~ 140 (225)
++.++|...|.| ++... .+||+||.-.
T Consensus 3 ~~~~l~~~~G~V---kwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGIC---KWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEE---EEEET-----TTTEEEEEEE
T ss_pred cccccccceeEE---EEEEC-----CCCeeEEeeC
Confidence 444555555543 44433 3788888854
No 234
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=20.40 E-value=8.7 Score=33.21 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHhcCCceeEE
Q psy222 107 LEQAFAEYGKVISV 120 (225)
Q Consensus 107 L~~~F~~~G~v~~v 120 (225)
|..+|.+++.|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 66778888777766
Done!