Your job contains 1 sequence.
>psy222
MSDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSI
DGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV
RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVLPGWKPRRL
GGGWGGNRNSGQLRFGGRNKPWVKPVQLMNERELGEWRKQGGAGS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy222
(225 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 367 9.5e-34 1
RGD|1310724 - symbol:Snrnp35 "small nuclear ribonucleopro... 354 2.3e-32 1
UNIPROTKB|Q5U1W5 - symbol:Snrnp35 "U11/U12 small nuclear ... 354 2.3e-32 1
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 351 4.7e-32 1
MGI|MGI:1923417 - symbol:Snrnp35 "small nuclear ribonucle... 350 6.0e-32 1
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 347 1.3e-31 1
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 346 1.6e-31 1
UNIPROTKB|Q16560 - symbol:SNRNP35 "U11/U12 small nuclear ... 343 3.3e-31 1
ZFIN|ZDB-GENE-050706-77 - symbol:snrnp35 "small nuclear r... 336 1.8e-30 1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 308 1.7e-27 1
POMBASE|SPAC19A8.13 - symbol:usp101 "U1 snRNP-associated ... 162 6.2e-12 1
MGI|MGI:1923919 - symbol:1700128F08Rik "RIKEN cDNA 170012... 150 9.4e-11 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 155 1.6e-10 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 155 1.6e-10 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 145 3.2e-10 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 151 3.3e-09 1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 150 3.8e-09 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 132 7.6e-09 1
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 146 9.1e-09 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 130 1.2e-08 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 147 1.4e-08 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 147 2.1e-08 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 146 2.2e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 128 2.2e-08 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 128 2.2e-08 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 128 2.2e-08 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 128 2.2e-08 1
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd... 144 2.3e-08 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 147 2.4e-08 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 147 2.4e-08 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 146 2.5e-08 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 147 2.5e-08 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 147 2.5e-08 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 147 2.5e-08 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 146 2.8e-08 1
FB|FBgn0033378 - symbol:tsu "tsunagi" species:7227 "Droso... 127 2.9e-08 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 127 2.9e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 127 2.9e-08 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 127 2.9e-08 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 146 3.2e-08 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 146 3.2e-08 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 146 3.4e-08 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 146 3.4e-08 1
DICTYBASE|DDB_G0284167 - symbol:DDB_G0284167 "RNA-binding... 142 3.4e-08 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 146 3.4e-08 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 146 3.4e-08 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 146 3.4e-08 1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 146 3.4e-08 1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 146 3.5e-08 1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 146 3.5e-08 1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 146 3.5e-08 1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 146 3.6e-08 1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 145 3.6e-08 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 146 3.7e-08 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 126 3.8e-08 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 126 3.8e-08 1
GENEDB_PFALCIPARUM|MAL13P1.338 - symbol:MAL13P1.338 "u1 s... 144 3.9e-08 1
UNIPROTKB|Q8ID37 - symbol:MAL13P1.338 "U1 small nuclear r... 144 3.9e-08 1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 146 4.0e-08 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 133 4.1e-08 1
FB|FBgn0016978 - symbol:snRNP-U1-70K "small ribonucleopro... 144 4.3e-08 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 125 5.0e-08 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 125 5.0e-08 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 125 5.0e-08 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 125 5.0e-08 1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 124 6.6e-08 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 124 6.6e-08 1
UNIPROTKB|G4N9S1 - symbol:MGG_10681 "Peptidyl-prolyl cis-... 143 7.7e-08 1
POMBASE|SPBC17G9.05 - symbol:rct1 "RRM-containing cycloph... 139 8.2e-08 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 123 8.8e-08 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 123 8.8e-08 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 123 8.8e-08 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 123 8.8e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.1e-07 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.1e-07 1
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 126 1.2e-07 1
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 126 1.2e-07 1
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 126 1.2e-07 1
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 126 1.2e-07 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 140 1.3e-07 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 121 1.5e-07 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 121 1.5e-07 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 121 1.5e-07 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 121 1.5e-07 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 135 1.8e-07 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 137 1.9e-07 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 120 2.0e-07 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 2.3e-07 1
UNIPROTKB|E2QV85 - symbol:RBM8A "Uncharacterized protein"... 126 2.3e-07 1
UNIPROTKB|I3LI59 - symbol:RBM8A "Uncharacterized protein"... 126 2.3e-07 1
TAIR|locus:2013016 - symbol:CSTF64 "cleavage stimulating ... 139 2.4e-07 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 119 2.6e-07 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 119 2.6e-07 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 119 2.6e-07 1
ASPGD|ASPL0000033941 - symbol:cyp8 species:162425 "Emeric... 138 3.2e-07 1
SGD|S000001444 - symbol:IST3 "Component of the U2 snRNP" ... 118 3.5e-07 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 136 3.6e-07 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 137 3.6e-07 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 136 3.9e-07 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 136 3.9e-07 1
WARNING: Descriptions of 360 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 77/167 (46%), Positives = 98/167 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRAI RA+ + Y P+ T DP TLF+ RLN +
Sbjct: 9 WAPIAKEYDPLKAGSIDGTDEEPHDRAIWRAMLARYVPNKGVTGDPHLTLFVARLNLQTT 68
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E+A L A R NR E+
Sbjct: 69 EEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVIDQHEVF 128
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQLMN 210
VDFE R + SGQLRFGGR++P+ KP+ L N
Sbjct: 129 VDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKPINLPN 175
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 73/165 (44%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNSQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E+A L A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 73/165 (44%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNSQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E+A L A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 72/165 (43%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYTPNKGVTGDPLLTLFVARLNLQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E++ L A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 72/165 (43%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNLQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E+A + A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLRGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 72/165 (43%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRAI RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WVPIAKEYDPLKAGSIDGTDEDPHDRAIWRAMLARYTPNKGVTGDPLLTLFVARLNLQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E++ L A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSLLKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ +P+ L
Sbjct: 124 VDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRQPINL 168
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/165 (43%), Positives = 97/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYTPNKGVTGDPLLTLFVARLNLQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E++ + A R + EI
Sbjct: 64 EEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 71/165 (43%), Positives = 96/165 (58%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ DP TLF+ RLN ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTK 63
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L++ F+ YG + +R+VRD VTG SK Y F+EY E+A + A R + EI
Sbjct: 64 EDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIF 123
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
VD+E R + SGQLRFGGR++P+ KP+ L
Sbjct: 124 VDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINL 168
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 70/169 (41%), Positives = 95/169 (56%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHD + RA+ + YKP+ DP TLF+ RLN +
Sbjct: 3 WSPVAKVYDPLKAGSIDGTDVEPHDAGVWRAMLARYKPNRGVCGDPDLTLFVARLNPQTT 62
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEII 163
E L F+++G + +R+VRD VTG SKRY F+EY E++ A R N+ E++
Sbjct: 63 EEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELL 122
Query: 164 VDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQLMNER 212
VD E R + SGQLRFGGR++P+ KP+ L R
Sbjct: 123 VDVEQERTLPGWRPRRLGGGQGGQKESGQLRFGGRDRPFRKPINLSTRR 171
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 71/186 (38%), Positives = 100/186 (53%)
Query: 36 SSSGQTVKYWYPYCITYDPIQAGSIDGTDTIPHDRAILRAL----RSTYKPHTSST---D 88
S G V Y +Y PIQAGSIDGTD PHD + RAL Y P S D
Sbjct: 2 SGGGNNVVNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGD 61
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
P TLF+GRL+ ++ E L + ++YG++ ++R+VR VTG S+ YGF+EY+ EK L A
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 149 IRALNRQNFQGSEIIVDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGRNKPWVKPVQL 208
+ G EIIVD+ ++ + SGQLRFGGR++P+ P++
Sbjct: 122 YEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRP 181
Query: 209 MNEREL 214
+ +L
Sbjct: 182 IPHEDL 187
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 162 (62.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 70 RAILRALRSTYKP-HTSST--DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDF 126
R LR++ + P H DP +T+F+ RL+ +++E+D+E+ F YG + +RVVR+
Sbjct: 76 RERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNK 135
Query: 127 VTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
VTG S Y F+ ++ E+ A +A G I+VD E GR
Sbjct: 136 VTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGR 179
>MGI|MGI:1923919 [details] [associations]
symbol:1700128F08Rik "RIKEN cDNA 1700128F08 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] MGI:MGI:1923919
EMBL:CH466522 eggNOG:COG0724 GeneTree:ENSGT00530000063750
OrthoDB:EOG4MSD0C EMBL:AC155907 EMBL:AK007310 IPI:IPI00112169
UniGene:Mm.491041 Ensembl:ENSMUST00000034483 UCSC:uc012gnw.1
Genevestigator:Q9D970 Uniprot:Q9D970
Length = 152
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 45 WYPYCITYDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSST-DPTRTLFIGRLNKNSR 103
W P YDP++AGSIDGTD PHDRA+ RA+ + Y P+ T D TLF+ +L+ ++
Sbjct: 4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLACYVPNKGVTGDLLHTLFVAQLDLQTK 63
Query: 104 E 104
E
Sbjct: 64 E 64
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 46/168 (27%), Positives = 75/168 (44%)
Query: 3 DEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSIDG 62
DE K ++S S E ++ KSSS E + SS D + S
Sbjct: 83 DEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSEEEPSKKR 142
Query: 63 TDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRV 122
+ +S KP S+ +P TLF+GRL+ N +A L++ F G VI RV
Sbjct: 143 KAEESKEEESAPVKKS--KPAASTEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
Query: 123 VRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+ + TG S+ YG+++++ + A A+ + + G I +D G+
Sbjct: 200 IMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 130 (50.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
S + P+ TLFIG L+ N+ +L F EYG VIS RV T K +G++++
Sbjct: 264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323
Query: 145 CLAAIRALNRQNFQGSEIIVDFECGR 170
AA+ A+N + +G +DF R
Sbjct: 324 AKAALEAMNGEYIEGRPCRLDFSTPR 349
Score = 51 (23.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
SDE++ + SS SE S SS + D+ S S
Sbjct: 94 SDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDS 130
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAK--SSSG 39
S +S SS EV +SSS + D K SSSG
Sbjct: 54 SSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSG 93
Score = 48 (22.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSK---SSSQTVEPRDAKSSSGQTVK 43
S E+ S+ +S S S DS SSS + E D+ SS + V+
Sbjct: 28 SSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVE 72
Score = 46 (21.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQT-VEPRDAKS 36
S + S+ +S SS E DS SS + VE +++ S
Sbjct: 43 SSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSS 78
Score = 41 (19.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 2 SD-EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
SD E S+ +S SS DS S S + E K + ++
Sbjct: 107 SDSEDSSSSDSSSSESDSDSDSDSDSDSEEEPSKKRKAEES 147
Score = 38 (18.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSS 37
E+K AK SE S SS D SS
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSS 49
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 46/168 (27%), Positives = 75/168 (44%)
Query: 3 DEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSIDG 62
DE K ++S S E ++ KSSS E + SS D + S
Sbjct: 83 DEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDSDSDSEEEPSKKR 142
Query: 63 TDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRV 122
+ +S KP S+ +P TLF+GRL+ N +A L++ F G VI RV
Sbjct: 143 KAEESKEEESAPVKKS--KPAASTEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
Query: 123 VRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+ + TG S+ YG+++++ + A A+ + + G I +D G+
Sbjct: 200 IMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 130 (50.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
S + P+ TLFIG L+ N+ +L F EYG VIS RV T K +G++++
Sbjct: 264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323
Query: 145 CLAAIRALNRQNFQGSEIIVDFECGR 170
AA+ A+N + +G +DF R
Sbjct: 324 AKAALEAMNGEYIEGRPCRLDFSTPR 349
Score = 51 (23.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
SDE++ + SS SE S SS + D+ S S
Sbjct: 94 SDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDSDSDS 130
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAK--SSSG 39
S +S SS EV +SSS + D K SSSG
Sbjct: 54 SSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSG 93
Score = 48 (22.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSK---SSSQTVEPRDAKSSSGQTVK 43
S E+ S+ +S S S DS SSS + E D+ SS + V+
Sbjct: 28 SSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVE 72
Score = 46 (21.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQT-VEPRDAKS 36
S + S+ +S SS E DS SS + VE +++ S
Sbjct: 43 SSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSS 78
Score = 41 (19.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 2 SD-EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
SD E S+ +S SS DS S S + E K + ++
Sbjct: 107 SDSEDSSSSDSSSSESDSDSDSDSDSDSEEEPSKKRKAEES 147
Score = 38 (18.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSS 37
E+K AK SE S SS D SS
Sbjct: 16 EEKPAKKVEEESSSEESSSDDSSSEESSSDDDSS 49
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L++G LN +ADLE+ FA YG V S +VV D TG S+ +GF+E ++ AAI L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 153 NRQNFQGSEIIVD 165
N + G ++V+
Sbjct: 65 NGKEMDGRNLMVN 77
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 151 (58.2 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 44/167 (26%), Positives = 78/167 (46%)
Query: 2 SDEQKSAKNSPSSHHSEV---RDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAG 58
S+ + + +S S EV + K + D++SSS + + + ++
Sbjct: 173 SESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESS 232
Query: 59 SIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVI 118
S D + R + T KP S + T T+F+GRL+ N + L Q F EYG ++
Sbjct: 233 SEDEKKRKAEPASEERPAKIT-KPSQDSNE-TCTVFVGRLSWNVDDQWLGQEFEEYGTIV 290
Query: 119 SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
RV+ D +G SK YG+++++ +A AA+ A + G + +D
Sbjct: 291 GARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLD 337
Score = 100 (40.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEY---DCEK 143
++P+ T+F+G L+ N+ E DL AF G + S+R+ D +G K +G++ + D K
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 144 ACLAAIRALNRQNFQGSEIIVDFECGR 170
C+ +N G +DF R
Sbjct: 422 KCVE----MNGHFIAGRPCRLDFSTPR 444
Score = 52 (23.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
++KS K SS SE S S S++ SSS
Sbjct: 74 QKKSKKKEESSSESESESSSSESESSSSESESSSS 108
Score = 52 (23.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
S + +++S S S +S+SSS E ++SSS ++
Sbjct: 83 SSSESESESSSSESESSSSESESSSSESESSSSESSSSES 122
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 150 (57.9 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 80 YKPHT--SST-DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
Y P+ ++T DP +TLF+ RLN S E+ +++ F YG + V +V D +T K Y F
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY + AA + + Q G ++VD E GR
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
+S D F+G L + + LE AFA+YG VI +++ D TG S+ +GF+ + EKA
Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
Query: 145 CLAAIRALNRQNFQGSEIIVD 165
AI +N Q+ G I V+
Sbjct: 62 MKDAIEGMNGQDLDGRSITVN 82
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 146 (56.5 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 52 YDPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAF 111
Y+ I+ I + DR L+ PH TDP RT+FIGRL + E +L++ F
Sbjct: 71 YEDIKLSKIKNAQLL--DRR-LQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYF 127
Query: 112 AEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN-RQNFQGSE--IIVDFEC 168
++G++ +R+V+D +T SK Y F+ + + A + + + Q + IVD E
Sbjct: 128 VKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIER 187
Query: 169 GR 170
GR
Sbjct: 188 GR 189
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 96 GRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ 155
G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R LN +
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 156 NFQGSEIIVD 165
F G + VD
Sbjct: 62 EFSGRALRVD 71
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 79
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 80 NLNGREFSGRALRVD 94
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 147 (56.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 146 (56.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN + E LEQAF +YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 67 NGKSVDGRQIRVD-QAGK 83
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
PT TL++G L E +++ F E+G V SVR+VRD TG K +GF+E E A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS-EAGAQKA 120
Query: 149 IRALNRQNFQ 158
+ LN NFQ
Sbjct: 121 MVKLNDFNFQ 130
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
PT TL++G L E +++ F E+G V SVR+VRD TG K +GF+E E A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMS-EAGAQKA 120
Query: 149 IRALNRQNFQ 158
+ LN NFQ
Sbjct: 121 MVKLNDFNFQ 130
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 128 (50.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ + ++ L+QAF +G+V V+ D TG S+ +GF+ + CE + AI+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 153 NRQNFQGSEIIVDFECGR 170
+ + G +I V+ R
Sbjct: 97 DGKELNGRQIRVNLATER 114
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 144 (55.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
+S DP RTLF+GR+N + E+ L + F YGK+ + +V D G + Y F+EY +
Sbjct: 98 ASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDKAE 156
Query: 145 CLAAIRALNRQNFQGSEIIVDFECGR 170
A + + G ++VD+E GR
Sbjct: 157 MHTAYKKADGIKVDGKRLVVDYERGR 182
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 146 (56.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 146 (56.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 127 (49.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ ++E ++++ F +YG++ ++ + D TG SK Y +EY+ K LAA AL
Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
Query: 153 NRQNFQGSEIIVDF 166
N G I VD+
Sbjct: 135 NGAEIMGQTIQVDW 148
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 127 (49.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN + E LEQ F++YG+V V VV+D + S+ +GF+ ++ + A+ A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 127 (49.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 153 NRQNFQGSEIIVDFECGR 170
N + G +I VD + G+
Sbjct: 67 NGKAVDGRQIRVD-QAGK 83
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 127 (49.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 84 TSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
+SS P+ LFIG L+ + E L+ AF+ +G+V VR+ D +G S+ +GF+++ E
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 144 ACLAAIRALNRQNFQGSEIIVDFECGRV 171
L+A A++ + G + + F RV
Sbjct: 94 DALSAKDAMDGKGLLGRPLRISFALERV 121
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 146 (56.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 146 (56.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 142 (55.0 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 84 TSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
T+ T P +F+G L +N + LE AFAE+GKV+SVR+++ S +GF++ + +
Sbjct: 10 TTPTTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFK--SNTFGFVDMEDLE 67
Query: 144 ACLAAIRALNRQNFQGSEIIVD 165
A+ A+N + F G ++ V+
Sbjct: 68 TANKAVAAINGREFDGKQVNVE 89
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 146 (56.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 146 (56.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 146 (56.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 146 (56.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 145 (56.1 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 24 RSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 83
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 84 NLNGREFSGRALRVD 98
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 146 (56.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 126 (49.4 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 94 FIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153
F+G L + + L+ AF++YG VI +++ D TG S+ +GF+ + ++A AI A+N
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 154 RQNFQGSEIIVD 165
Q+ G I V+
Sbjct: 69 GQDLDGRNITVN 80
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 126 (49.4 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG L+ + +A L AFA +G V+ +V+ D TG S+ +GF+ ++ E A AAI +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 153 NRQNFQGSEIIVD 165
+ + G I V+
Sbjct: 97 DGKELNGRHIRVN 109
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 64 DTIPHDRAILRALRSTYKPHTS---STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV 120
+ + ++ IL+ R Y P + ++DP +TLFIGRL+ E L++ F YGK+ +V
Sbjct: 68 EKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTV 127
Query: 121 RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+++ D + Y F+E++ K+ A + + + + I+VD E GR
Sbjct: 128 KIIYD-KNLKPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGR 176
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 144 (55.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 64 DTIPHDRAILRALRSTYKPHTS---STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISV 120
+ + ++ IL+ R Y P + ++DP +TLFIGRL+ E L++ F YGK+ +V
Sbjct: 68 EKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTV 127
Query: 121 RVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+++ D + Y F+E++ K+ A + + + + I+VD E GR
Sbjct: 128 KIIYD-KNLKPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGR 176
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 146 (56.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L+ F+E G V+S R+V D TG K YGF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVD 165
LN + F G + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 133 (51.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ 155
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 113 (44.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 144 (55.7 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
++ DP RTLFI R+N ++ E+ L + F YG + + ++ D +G K Y F+EY+ E+
Sbjct: 96 ATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERD 155
Query: 145 CLAAIRALNRQNFQGSEIIVDFECGRVXXXXXXXXXXXXXXXNRNSGQ---LRFGGR--N 199
AA + + + ++VD E R R G ++ GR N
Sbjct: 156 MHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDN 215
Query: 200 KPWVKPVQLMNERELGEWRKQGGAGS 225
+ + +L ERE E +GG GS
Sbjct: 216 ERERERYRLEREREDREGPGRGG-GS 240
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 125 (49.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 125 (49.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D+ T S+ +GF+ + + A+RA
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIHVD 80
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 125 (49.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACL 146
+D +++G L + E DL Q F+ +G + SV++VR+F TG SK Y F+ Y K +
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 147 AAIRALNRQNFQGSEIIV 164
A+ A + ++ QG ++V
Sbjct: 100 KALDA-HGKDLQGRSLVV 116
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 125 (49.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACL 146
+D +++G L + E DL Q F+ +G + SV++VR+F TG SK Y F+ Y K +
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 147 AAIRALNRQNFQGSEIIV 164
A+ A + ++ QG ++V
Sbjct: 100 KALDA-HGKDLQGRSLVV 116
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 124 (48.7 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 76 LRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYG 135
L S+ SST T+TL++G L + E+ +++ FAE+G+V +VR+++D TG + +G
Sbjct: 51 LSSSEDEEASST--TKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFG 108
Query: 136 FLEYDCEKACLAAIRALNRQNF 157
F+ +A AI ALN + +
Sbjct: 109 FVVIAASQA-QTAIDALNEKEY 129
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 124 (48.7 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 76 LRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYG 135
L S+ SST T+TL++G L + E+ +++ FAE+G+V +VR+++D TG + +G
Sbjct: 51 LSSSEDEEASST--TKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFG 108
Query: 136 FLEYDCEKACLAAIRALNRQNF 157
F+ +A AI ALN + +
Sbjct: 109 FVVIAASQA-QTAIDALNEKEY 129
>UNIPROTKB|G4N9S1 [details] [associations]
symbol:MGG_10681 "Peptidyl-prolyl cis-trans isomerase-like
4" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581
EMBL:CM001234 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735
RefSeq:XP_003715897.1 EnsemblFungi:MGG_10681T0 GeneID:2682882
KEGG:mgr:MGG_10681 Uniprot:G4N9S1
Length = 505
Score = 143 (55.4 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN +++ADLE F+ +GK++S V+RD TG S +Y F+E++
Sbjct: 248 PFAEVKPPENVLFVCKLNPVTQDADLELIFSRFGKILSCEVIRDSKTGDSLQYAFIEFED 307
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+ AC A + I VDF
Sbjct: 308 KAACETAYFKMQGVLIDDRRIHVDF 332
>POMBASE|SPBC17G9.05 [details] [associations]
symbol:rct1 "RRM-containing cyclophilin regulating
transcription Rct1" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISM] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0006457 "protein folding"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0044732 "mitotic spindle pole body" evidence=IDA] [GO:1901407
"regulation of phosphorylation of RNA polymerase II C-terminal
domain" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC17G9.05 GO:GO:0006457 GO:GO:0008360 GO:GO:0044732
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000790 GO:GO:0006368
GO:GO:1901407 eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
PIR:T39728 RefSeq:NP_595894.1 ProteinModelPortal:Q9UUE4
STRING:Q9UUE4 EnsemblFungi:SPBC17G9.05.1 GeneID:2539942
KEGG:spo:SPBC17G9.05 NextBio:20801085 Uniprot:Q9UUE4
Length = 432
Score = 139 (54.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN +++ DLE F+ +GK+IS +V+RD TG S +Y F+E+D
Sbjct: 235 PFAHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN 294
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+++ A + S I VDF
Sbjct: 295 KESVEKAYFKMQNVLIDDSRIHVDF 319
Score = 36 (17.7 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 8 AKNSPSSHHSEVRDSKSSSQTVEPRDAK 35
A+ +PS H+++ S+ T+ RD K
Sbjct: 80 AEFNPSLVHNKMGLVSMSTATISSRDDK 107
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 123 (48.4 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 123 (48.4 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 123 (48.4 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 123 (48.4 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 135 NGQDLMGQPISVDW 148
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 135 NGQDLMGQPISVDW 148
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 135 NGQDLMGQPISVDW 148
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 135 NGQDLMGQPISVDW 148
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 39/130 (30%), Positives = 69/130 (53%)
Query: 32 RDAKSSSGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPT 90
RD K + GQ++ Y + + Y DP A +T+ R + ++ +Y +S++
Sbjct: 99 RD-KITEGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRD 152
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
L++ L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 151 ALNRQNFQGS 160
LN Q G+
Sbjct: 213 GLNGQKPPGA 222
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F +G + V VV+D T S+ +GF+ + + A+RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 78 STYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFL 137
ST +S + RTL++G L + E + + F+E+G V SVR+++D TG + +GF+
Sbjct: 58 STSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFV 117
Query: 138 EYDCEKACLAAIRALNRQNFQ 158
E + AI ALN FQ
Sbjct: 118 EMASDDLD-KAISALNDTEFQ 137
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 78 STYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFL 137
ST +S + RTL++G L + E + + F+E+G V SVR+++D TG + +GF+
Sbjct: 58 STSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFV 117
Query: 138 EYDCEKACLAAIRALNRQNFQ 158
E + AI ALN FQ
Sbjct: 118 EMASDDLD-KAISALNDTEFQ 137
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 135 (52.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
S DP FIG L + + L AF +YG ++ +VV D +G S+ +GF+ +D +KA
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 146 LAAIRALNRQNFQGSEIIVD 165
AI A+N + G I VD
Sbjct: 62 DEAIAAMNGMDLDGRTITVD 81
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 137 (53.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
SS P+R +F+G + E + F+ GKV++ R+V D TG K +GF EY +
Sbjct: 2 SSKPPSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDS 61
Query: 145 CLAAIRALNRQNFQGSEIIVDF 166
+A+R LN G ++ VDF
Sbjct: 62 AASAVRNLNDTEIMGRKLRVDF 83
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P +P+ LF+ L+K + L AFA++G+V +VV D V+G+SK +GF+ Y
Sbjct: 47 PARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+ I ++ + G I ++
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEY 131
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 122 (48.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 78 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 137
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 138 NGQDLMGQPISVDW 151
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAEYG++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 78 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 137
Query: 153 NRQNFQGSEIIVDF 166
N Q+ G I VD+
Sbjct: 138 NGQDLMGQPISVDW 151
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 139 (54.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
SS+ R +F+G + ++ E L + E G V+S R+V D TG K YGF EY E+
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Query: 145 CLAAIRALNRQNFQGSEIIVDF 166
L+A R L G ++ VDF
Sbjct: 63 ALSARRNLQSYEINGRQLRVDF 84
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 119 (46.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149
T+TL++G L R L++ +E+G+VI RV+ + TG S+ YGF+E E A +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDA-EKFM 60
Query: 150 RALNRQNFQGSEIIV 164
LN + +G +++V
Sbjct: 61 TGLNGKEVEGRQLVV 75
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 119 (46.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149
T+TL++G L R L++ +E+G+VI RV+ + TG S+ YGF+E E A +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDA-EKFM 60
Query: 150 RALNRQNFQGSEIIV 164
LN + +G +++V
Sbjct: 61 TGLNGKEVEGRQLVV 75
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 119 (46.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ +GF+ + + +RA+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGESLDGRQIRVD 80
>ASPGD|ASPL0000033941 [details] [associations]
symbol:cyp8 species:162425 "Emericella nidulans"
[GO:0044732 "mitotic spindle pole body" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:1901407 "regulation of phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003723 eggNOG:COG0724
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 EMBL:AACD01000169
RefSeq:XP_682364.1 ProteinModelPortal:Q5ARI5 STRING:Q5ARI5
EnsemblFungi:CADANIAT00009519 GeneID:2868035 KEGG:ani:AN9095.2
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
Uniprot:Q5ARI5
Length = 461
Score = 138 (53.6 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN +++ DLE F+ +GK++S V+RD TG S +Y F+E++
Sbjct: 239 PFAEVKPPENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFES 298
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+K C A + I VDF
Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHVDF 323
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/98 (25%), Positives = 51/98 (52%)
Query: 68 HDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFV 127
+D+ + + S ++ + ++IG LN+ E D+ F+EYG + V + RD
Sbjct: 8 NDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDEN 67
Query: 128 TGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
TG S+ + +L+Y+ +++ + A+ LN G + +D
Sbjct: 68 TGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKID 105
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 136 (52.9 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 81 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 135
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 136 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 195
Query: 157 FQGS 160
G+
Sbjct: 196 PSGA 199
Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 37 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 96
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 97 DAEKAINTLNGLRLQTKTIKVSY 119
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 137 (53.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 125 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 179
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 180 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQK 239
Query: 157 FQGS 160
G+
Sbjct: 240 PSGA 243
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 136 (52.9 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 83 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 138 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Query: 157 FQGS 160
G+
Sbjct: 198 PSGA 201
Score = 112 (44.5 bits), Expect = 0.00037, P = 0.00037
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 136 (52.9 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 83 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 138 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Query: 157 FQGS 160
G+
Sbjct: 198 PSGA 201
Score = 112 (44.5 bits), Expect = 0.00037, P = 0.00037
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 136 (52.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 88 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 143 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Query: 157 FQGS 160
G+
Sbjct: 203 PSGA 206
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSY 126
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 136 (52.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 88 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 143 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Query: 157 FQGS 160
G+
Sbjct: 203 PSGA 206
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 44 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSY 126
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 136 (52.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PSGA 194
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 136 (52.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PSGA 194
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 136 (52.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 83 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 138 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Query: 157 FQGS 160
G+
Sbjct: 198 PSGA 201
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 39 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSY 121
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 136 (52.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 83 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 137
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 138 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Query: 157 FQGS 160
G+
Sbjct: 198 PSGA 201
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 99 DAEKAINTLNGLRLQTKTIKVSY 121
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 134 (52.2 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 69 DRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVT 128
+RA R R +P D +++G L + LE+ F+E+GKV+ RVV D T
Sbjct: 187 NRAAPRGSRPERQPRVY--DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRET 244
Query: 129 GHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
G S+ +GF++ E AI AL+ QN +G I V+
Sbjct: 245 GRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 136 (52.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 99 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 153
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 154 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 213
Query: 157 FQGS 160
G+
Sbjct: 214 PSGA 217
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 55 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 114
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 115 DAEKAINTLNGLRLQTKTIKVSY 137
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 136 (52.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 87 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 141
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 142 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 201
Query: 157 FQGS 160
G+
Sbjct: 202 PSGA 205
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 43 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 102
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 103 DAEKAINTLNGLRLQTKTIKVSY 125
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 136 (52.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 88 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 143 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Query: 157 FQGS 160
G+
Sbjct: 203 PSGA 206
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 44 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSY 126
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 136 (52.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 88 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 142
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 143 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Query: 157 FQGS 160
G+
Sbjct: 203 PSGA 206
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 85 SSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEK 143
++TD ++T L + L +N + + F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 144 ACLAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 104 DAEKAINTLNGLRLQTKTIKVSY 126
>ZFIN|ZDB-GENE-021231-4 [details] [associations]
symbol:mki67ip "mki67 (FHA domain) interacting
nucleolar phosphoprotein (human)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010923 "negative regulation
of phosphatase activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-021231-4
GO:GO:0007275 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX
InterPro:IPR021043 Pfam:PF12196 EMBL:AF506200 EMBL:BC071545
IPI:IPI00502973 RefSeq:NP_775395.1 UniGene:Dr.76897
ProteinModelPortal:Q8JIY8 SMR:Q8JIY8 STRING:Q8JIY8 PRIDE:Q8JIY8
Ensembl:ENSDART00000059549 GeneID:317644 KEGG:dre:317644
InParanoid:Q8JIY8 NextBio:20807127 Bgee:Q8JIY8 Uniprot:Q8JIY8
Length = 269
Score = 133 (51.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140
+P T T L++G L + E L+ F ++GKV+ +RV R TG SK YGF+E++
Sbjct: 35 RPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFE 94
Query: 141 CEKACLAAIRALNRQNFQGSEII 163
C++ +N G II
Sbjct: 95 CDEVAKIVAETMNNY-LMGERII 116
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 135 (52.6 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PPGA 194
Score = 113 (44.8 bits), Expect = 0.00025, P = 0.00025
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 137 (53.3 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 37/150 (24%), Positives = 69/150 (46%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH + D +TLF+ R+N ++ E+ L + F YG + + +V + TG + Y F
Sbjct: 89 WDPHNDANAQGDAFKTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRVXXXXXXXXXXXXXXXNRNSG---QL 193
+EY+ E+ +A + + + G ++VD E GR R G +
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI 208
Query: 194 RFGGRNKPWV---KPVQLMNERELGEWRKQ 220
+ GR+ +P+ +R+ GE R++
Sbjct: 209 KHSGRDDTSRYDDRPIGSDRDRDRGERRER 238
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 130 (50.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG + + E L +AF +YG+V+ RV+ D TG S+ +GF+ + +A +AI+AL
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 153 NRQNFQGSEIIVDF 166
+ ++ G + V++
Sbjct: 102 DGRDLHGRVVKVNY 115
Score = 36 (17.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 189 NSGQLRFGGRNKPWVKPVQLMNERELGEWRK 219
NS Q FGG N + Q E + G K
Sbjct: 260 NSSQ--FGGDNTQFTAGGQFGGEDQFGSMEK 288
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 135 (52.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PPGA 194
Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 135 (52.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PPGA 194
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 135 (52.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PPGA 194
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 135 (52.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PPGA 194
Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSY 114
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 116 (45.9 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 80 YKPHTSSTDPTRT-----LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRY 134
+ P ST P + LFIG++ +N E DL+ F E+GK+ + V++D TG K
Sbjct: 36 HSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC 95
Query: 135 GFLEYDCEK-ACLAAIRALNRQ 155
FL Y CE+ + L A AL+ Q
Sbjct: 96 AFLTY-CERESALKAQSALHEQ 116
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 135 (52.6 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 104 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 159 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 218
Query: 157 FQGS 160
G+
Sbjct: 219 PPGA 222
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 59 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSY 142
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 135 (52.6 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 105 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 160 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Query: 157 FQGS 160
G+
Sbjct: 220 PPGA 223
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY 143
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 135 (52.6 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 105 TGQSLGYGF---VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 160 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Query: 157 FQGS 160
G+
Sbjct: 220 PPGA 223
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 84 TSSTDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
+ +T+ ++T L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 143 KACLAAIRALNRQNFQGSEIIVDF 166
K AI LN Q I V +
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY 143
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 134 (52.2 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ R + ++ +Y +S++ L++
Sbjct: 104 TGQSLGYGF---VNYVDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQ 155
L K + +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 159 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 75 ALRSTYKPHTS-STDPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSK 132
A+ + P S +T+ ++T L + L ++ + +L+ F G++ S ++VRD +TG S
Sbjct: 49 AINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSL 108
Query: 133 RYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
YGF+ Y K AI LN Q I V +
Sbjct: 109 GYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSY 142
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 129 (50.5 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG L+ ++ E LE+AF++YG + V V+RD T S+ +GF+ ++ + A+ A+
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 153 NRQNFQGSEIIVDFECGR 170
N + G I VD E G+
Sbjct: 85 NGKQVDGRMIRVD-EAGK 101
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 122 (48.0 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>TAIR|locus:2024852 [details] [associations]
symbol:CYP59 "cyclophilin 59" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0005829
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0652
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735 OMA:DRTQNRS
HSSP:Q27450 EMBL:AY568526 IPI:IPI00547571 RefSeq:NP_175776.2
UniGene:At.37348 SMR:Q6Q151 IntAct:Q6Q151 STRING:Q6Q151
EnsemblPlants:AT1G53720.1 GeneID:841810 KEGG:ath:AT1G53720
TAIR:At1g53720 InParanoid:Q6Q151 ProtClustDB:CLSN2690463
Genevestigator:Q6Q151 Uniprot:Q6Q151
Length = 506
Score = 135 (52.6 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DL F+ +G V+S V+RDF TG S Y F+E++
Sbjct: 234 PEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFEN 293
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+++C A ++ I VDF
Sbjct: 294 KESCEQAYFKMDNALIDDRRIHVDF 318
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG L ++ + L + F+ YG + VV+D T S+ +GF+ + E AA+ A+
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 153 NRQNFQGSEIIVD 165
N Q F G I VD
Sbjct: 64 NNQEFDGRIIRVD 76
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG L+ + E L +AF++ G+V+ ++V D V+ SK +GF+ + A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 153 NRQNFQGSEIIVDF 166
N Q G I VD+
Sbjct: 96 NGQQLNGRTIFVDY 109
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 76 LRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYG 135
L ++ P S + TLF+ ++ +S E L QAF++YG+V+ V V+ D + K +
Sbjct: 6 LYRSFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFA 65
Query: 136 FLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
++ + ++ A+ LN Q G +I+D
Sbjct: 66 YVTFSSKEEAEKALLELNAQLVDGRVVILD 95
>ZFIN|ZDB-GENE-040426-2647 [details] [associations]
symbol:sltm "SAFB-like, transcription modulator"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
ZFIN:ZDB-GENE-040426-2647 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
EMBL:AL935053 IPI:IPI00490957 Ensembl:ENSDART00000123464
ArrayExpress:E7F7Q8 Bgee:E7F7Q8 Uniprot:E7F7Q8
Length = 992
Score = 133 (51.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 41/146 (28%), Positives = 66/146 (45%)
Query: 20 RDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSIDGTDTIPHDRAILRALRST 79
+DS+ +S+ E D + SG+ P G+ + DR +A +
Sbjct: 290 KDSREASKKGETGDKEKDSGKK-----------GPSSTGATGQAKSSSKDRDG-KAAKDE 337
Query: 80 YKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEY 139
+SST TR L++ L+ N++ ADL+ F +YGKV S +VV + + +K YG +
Sbjct: 338 KGSGSSSTSSTRNLWVSGLSSNTKAADLKNLFGKYGKVFSAKVVTNARSPGAKCYGLVTM 397
Query: 140 DCEKACLAAIRALNRQNFQGSEIIVD 165
I L+R G +I VD
Sbjct: 398 SSSAEVARCISHLDRTELHGQQISVD 423
Score = 42 (19.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 189 NSGQLRFGGRN-KPWVKPVQLMNER 212
++G GG N K V+PVQ+ ER
Sbjct: 847 HAGWKNDGGMNTKQDVRPVQIRQER 871
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN + E LE F +YG+++ V +++D T S+ + F+ ++ A R +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 153 NRQNFQGSEIIVD 165
N ++ G I V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 122 (48.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ +++ + E D+ FAE+G++ ++ + D TG+ K Y +EY+ K AA+ L
Sbjct: 75 LFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGL 134
Query: 153 NRQNFQGSEIIVDF 166
N Q G I VD+
Sbjct: 135 NGQELMGQPISVDW 148
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEY 139
+F+G L+ D++ AFA +GK+ RVV+D TG SK YGF+ +
Sbjct: 6 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 52
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEY 139
+F+G L+ D++ AFA +GK+ RVV+D TG SK YGF+ +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 106
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/68 (32%), Positives = 43/68 (63%)
Query: 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
+T+ T F+ L++++ E DL F+++G VI +++ D TG S+R+GF+ ++ EK+
Sbjct: 2 ATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
Query: 146 LAAIRALN 153
AI ++
Sbjct: 62 TDAIMIMD 69
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/124 (27%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/124 (27%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/124 (27%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/124 (27%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>CGD|CAL0002077 [details] [associations]
symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
Length = 267
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 78 STYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFL 137
+T + S+ + ++IGRL +E++L+ F+++G VI+V++ R+ TG++K YGF+
Sbjct: 111 NTSANNKSTKSKSGVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFI 170
Query: 138 EYDCEKACLAAIRALN 153
E+D + A +N
Sbjct: 171 EFDSIEVAKVAAETMN 186
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 110 (43.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+ RL+ + + L Q F+ +G++ R++RD T K +GF+ +D E A+++L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 153 NRQNFQGSEIIVD 165
+ + G I V+
Sbjct: 69 DGKIVDGRLIFVE 81
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 130 (50.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 91 RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIR 150
R++F+G + + E L++ F+E G V+S+++V D +G K +GF EY ++ L+A+R
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 151 ALNRQNFQGSEIIVDFEC 168
LN G + VD C
Sbjct: 76 NLNGYEIGGRTLRVDNAC 93
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 129 (50.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 85 SSTDPTRT--LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
S + P +T LFI L+ + E L AF +G+++ V+++ D ++ SK Y FLEY E
Sbjct: 274 SESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 333
Query: 143 KACLAAIRALNRQNFQGSEIIVD 165
+A A++ +N + G I+VD
Sbjct: 334 EAAGTALKEMNGKIINGWMIVVD 356
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 112 (44.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140
KP S + R LF+G LNK E D+ + F +G + ++R G+SK F++Y
Sbjct: 8 KPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYS 66
Query: 141 CEKACLAAIRALN-RQNFQG--SEIIVDF 166
AAI AL+ Q G S ++V F
Sbjct: 67 SHAEAQAAINALHGSQTMPGASSSLVVKF 95
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 109 (43.4 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G LN N+ E LE F+ +G + V VV+D T S+ + F+ + + A+R +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGKSLDGRQIRVD 80
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 128 (50.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 35/125 (28%), Positives = 66/125 (52%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 75 TGQSLGYGF---VNYVDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 129
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVT-GHSKRYGFLEYDCEKACLAAIRALNRQ 155
L K + D+EQ F++YG++I+ R++ D VT G S+ GF+ +D AI+ LN Q
Sbjct: 130 GLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
Query: 156 NFQGS 160
G+
Sbjct: 190 KPLGA 194
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 122 (48.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 129 (50.5 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
SS++ +T++IG L + E+ L F++ G+VISV+++R+ TG S+RYGF+E++ A
Sbjct: 78 SSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAA 137
Query: 145 CLAAIRALN 153
+++ N
Sbjct: 138 AEKVLQSYN 146
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/124 (27%), Positives = 66/124 (53%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y +P A +T+ R + ++ +Y +S++ L++
Sbjct: 105 TGQSLGYGF---VNYMEPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + +LEQ F+++G++I+ R++ D VTG S+ GF+ +D AI+ LN Q
Sbjct: 160 GLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQK 219
Query: 157 FQGS 160
G+
Sbjct: 220 PPGA 223
Score = 111 (44.1 bits), Expect = 0.00053, P = 0.00053
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
S D L + L +N + +L+ F G++ S ++VRD +TG S YGF+ Y K
Sbjct: 63 SEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 146 LAAIRALNRQNFQGSEIIVDF 166
AI LN Q I V +
Sbjct: 123 EKAINTLNGLRLQTKTIKVSY 143
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 116 (45.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+FIG L E D+ F++YG+V+++ +VRD TG SK + FL Y+ +++ + A+
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 153 NRQNFQGSEIIVD 165
N +G I VD
Sbjct: 98 NGIKIKGRTIRVD 110
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 128 (50.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 50 ITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLE 108
+ Y DP A +T+ R + ++ +Y +S++ L++ L K + +LE
Sbjct: 125 VNYIDPKDAEK--AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELE 182
Query: 109 QAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160
Q F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q G+
Sbjct: 183 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 234
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 119 (46.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 78 STYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFL 137
S+ P +SS+ P L++ L+ + E L F ++G +I + +V D V K + FL
Sbjct: 64 SSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
Query: 138 EYDCEKACLAAIRALNRQNFQGSEIIVD 165
Y+ E+ + AI+ ++ + G I V+
Sbjct: 124 RYETEEEAMKAIQGMHGKFLDGRVIFVE 151
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L +G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 122 (48.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L+IG L+ + E L+ AF+ + V RV+ + VTG S+ YGF+ + E + +AI A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 153 NRQNFQGSEIIVD 165
N Q G I V+
Sbjct: 93 NGQELNGFNISVN 105
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 122 (48.0 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 127 (49.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 33/124 (26%), Positives = 65/124 (52%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D TG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 127 (49.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 33/124 (26%), Positives = 65/124 (52%)
Query: 38 SGQTVKYWYPYCITY-DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIG 96
+GQ++ Y + + Y DP A +T+ + + ++ +Y +S++ L++
Sbjct: 76 TGQSLGYGF---VNYSDPNDADK--AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 97 RLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQN 156
L K + ++EQ F++YG++I+ R++ D TG S+ GF+ +D AI+ LN Q
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 157 FQGS 160
G+
Sbjct: 191 PLGA 194
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 127 (49.8 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFI L + +L+Q FA YG VIS +V D T SK +GF+ YD ++ +AAI+ L
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 153 NRQNFQGSEIIVDFE 167
N + +G ++ V+F+
Sbjct: 349 NGRAIEGKKLKVNFK 363
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
++IG L+ E D+ F++YG+ I V +VRD TG SK Y FL Y +++ + A+
Sbjct: 38 IYIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNF 97
Query: 153 NRQNFQGSEIIVD 165
N ++VD
Sbjct: 98 NGYKLLERPLVVD 110
Score = 42 (19.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 4 EQKSAKNSPSSHHSEVRDS 22
E K+ N+ SS H + RDS
Sbjct: 17 ELKNIGNNDSSWHDQYRDS 35
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 118 (46.6 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
++IG L+ E D+ F++YG+ I V +VRD TG SK Y FL Y +++ + A+
Sbjct: 38 IYIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNF 97
Query: 153 NRQNFQGSEIIVD 165
N ++VD
Sbjct: 98 NGYKLLERPLVVD 110
Score = 42 (19.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 4 EQKSAKNSPSSHHSEVRDS 22
E K+ N+ SS H + RDS
Sbjct: 17 ELKNIGNNDSSWHDQYRDS 35
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 119 (46.9 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140
K T +D TLF+G L+ N +A L + F G V S RV+ D +G SK +G++++
Sbjct: 229 KTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFA 288
Query: 141 CEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+ A G EI VDF G+
Sbjct: 289 TPEEAEKAHGEKQGAFIDGREIKVDFSTGK 318
Score = 47 (21.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
SD + AK +P + D K++++ VE ++ S +
Sbjct: 117 SDSESDAKPAPKEKAATNVDKKAAAKKVEKSESSDSDSDS 156
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
SD S +S S SEV + K + + K++ ++
Sbjct: 61 SDSDASDSSSDSDSESEVEEKKPTKAATNGKAKKAAKAES 100
Score = 39 (18.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS-GQTVK 43
E S +S S DS S S+ E + K+++ G+ K
Sbjct: 54 EVSSESDSDSDASDSSSDSDSESEVEEKKPTKAATNGKAKK 94
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 119 (46.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG L+ ++ E LE AF++YG + +V V R+ T S+ +GF+ ++ A+ +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G I VD E G+
Sbjct: 67 NGKSVDGRTIRVD-EAGK 83
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 126 (49.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/104 (32%), Positives = 50/104 (48%)
Query: 67 PHDRAILRALRSTYKPHTSST---DPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRV 122
PH R + + + Y+ H + D RT L + L +N + +L F+ G+V S ++
Sbjct: 1 PH-RFLKNTMSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKL 59
Query: 123 VRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
+RD V GHS YGF+ Y K AI LN Q I V +
Sbjct: 60 IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 103
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 116 (45.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 94 FIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALN 153
F+G L + + DL++ F+++G VI +++ D +G S+ +GF+ + EKA AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 154 RQNFQGSEIIVD 165
+ G I V+
Sbjct: 69 GKELDGRVITVN 80
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 128 (50.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V + +G + Y F
Sbjct: 89 WDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>UNIPROTKB|C9JB16 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161628 EMBL:AL445623 HGNC:HGNC:3313 IPI:IPI00645584
ProteinModelPortal:C9JB16 SMR:C9JB16 STRING:C9JB16
Ensembl:ENST00000423281 ArrayExpress:C9JB16 Bgee:C9JB16
Uniprot:C9JB16
Length = 90
Score = 107 (42.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 104 EADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160
+ +LEQ F++YG++I+ R++ D VTG S+ GF+ +D AI+ LN Q G+
Sbjct: 3 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 59
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 107 (42.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+F+ +++ + E D+ F+EYGK+ ++ + D TG K Y +EY+ +K AI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 153 NRQNFQGSEIIVDF 166
N + G + VD+
Sbjct: 117 NDTDLLGQNVKVDW 130
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 128 (50.1 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 32/97 (32%), Positives = 48/97 (49%)
Query: 70 RAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTG 129
RAIL + P P LF+ +LN + + DLE F+ +G + S V+RD+ TG
Sbjct: 220 RAILLEMVGDL-PDAEVKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTG 278
Query: 130 HSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
S Y F+E++ E+ C A ++ I VDF
Sbjct: 279 ESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDF 315
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 126 (49.4 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 19 VRDSKSSSQTVEPRDAKS-----SSGQTVKYWYPYCITYDPIQAGSID-GTDTIPHDRAI 72
VRD K S V P + GQ++ Y + + Y ++A + +T+ R
Sbjct: 58 VRD-KVSGNLVLPASLTALNPALQQGQSLGYGF---VNY--VRAEDAEKAVNTLNGLRLQ 111
Query: 73 LRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSK 132
+ ++ +Y +S + L++ L KN + DLE FA +GK+I+ R++ D ++G SK
Sbjct: 112 NKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSK 171
Query: 133 RYGFLEYDCEKACLAAIRALNRQNFQG 159
GF+ +D AI+ LN + +G
Sbjct: 172 GVGFIRFDQRNEAERAIQELNGKTPKG 198
>WB|WBGene00000890 [details] [associations]
symbol:sig-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0040007
GO:GO:0006457 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS
EMBL:Z97628 EMBL:Z81080 PIR:T22008 RefSeq:NP_492343.2 HSSP:Q27450
ProteinModelPortal:G5EEW6 SMR:G5EEW6 PRIDE:G5EEW6
EnsemblMetazoa:F39H2.2a GeneID:172664 KEGG:cel:CELE_F39H2.2
CTD:172664 WormBase:F39H2.2a NextBio:876477 Uniprot:G5EEW6
Length = 427
Score = 127 (49.8 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
P LF+ +LN + + DLE F+ +GK+ + +VRD +G S +Y F+E+D K+C A
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
Query: 149 IRALNRQNFQGSEIIVDF 166
++ I VDF
Sbjct: 299 FFKMDNVLIDDRRIHVDF 316
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 129 (50.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 41/157 (26%), Positives = 71/157 (45%)
Query: 9 KNSPSS-HHSEVRDSKSS-SQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSIDGTDTI 66
KN S H + D+ SS V + A SSGQ+ Y + + Q +
Sbjct: 129 KNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Query: 67 PHDRAILRA--LRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVR 124
+D+ + LR + T++ +++ L +++ + DL+ AF EYGK+ S V++
Sbjct: 189 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 248
Query: 125 DFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSE 161
D G SK +GF+ ++ A+ +LN F E
Sbjct: 249 DG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKE 284
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 116 (45.9 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L +G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 126 (49.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 124 (48.7 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 53 DPIQAGSIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFA 112
+P+Q+ + D D P++ + + S + LF+ + +E +L+Q F+
Sbjct: 65 EPLQSMNEDEVD--PNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFS 122
Query: 113 EYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQG 159
++G V VR++R+ VT S+ +GFL + + +AI LN Q F G
Sbjct: 123 KFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYG 169
>UNIPROTKB|I3LGX0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 OMA:ERDGHYG EMBL:CU459105
EMBL:CU915504 EMBL:AEMK01192340 Ensembl:ENSSSCT00000024741
Uniprot:I3LGX0
Length = 471
Score = 127 (49.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 208 PDADIKPPENVLFVCKLNSVTPDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 267
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 268 EEDCEKAFFKMDNVLIDDRRIHVDF 292
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 106 (42.4 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 92 TLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRA 151
++++G LN + + L+ F+ YG++ S+ V+ TG S+ Y ++EY+ ++ + AI
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDD 64
Query: 152 LNRQNFQGSEI 162
LN Q F+G+ +
Sbjct: 65 LNDQPFEGNHL 75
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 106 (42.4 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 90 TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAI 149
TR +++G L+ + + L +AF+ YG V+ V+RD T S+ +GF+ Y AA+
Sbjct: 3 TR-VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 150 RALNRQNFQGSEIIV 164
++ + G + V
Sbjct: 62 SGMDGKELNGRRVSV 76
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 129 (50.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
++ PT+TLF+ L+ ++ + L+ +F G I+ R+ D TG SK +GF+++D E+ C
Sbjct: 552 NSGPTKTLFVKGLSDDTTDQTLKDSFD--G-AIAARIATDRDTGSSKGFGFVDFDNEQDC 608
Query: 146 LAAIRALNRQNFQGSEIIVDFECGRVXXXXXXXXXXXXXXXNRNSGQLRFGGR 198
AA A++ G+++ +D+ + R G+ FGGR
Sbjct: 609 KAAKEAMDDGEIDGNKVTLDYAKPKGEGGRGGFGGGRGGFGGRGGGRGGFGGR 661
>UNIPROTKB|F1N6W2 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
UniGene:Bt.9312 ProteinModelPortal:F1N6W2
Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
Length = 492
Score = 127 (49.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 231 PDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 290
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 291 EEDCEKAFFKMDNVLIDDRRIHVDF 315
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 127 (49.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 231 PDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 290
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 291 EEDCEKAFFKMDNVLIDDRRIHVDF 315
>MGI|MGI:1914668 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
Length = 492
Score = 127 (49.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 231 PDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 290
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 291 EEDCEKAFFKMDNVLIDDRRIHVDF 315
>RGD|1311051 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
Length = 492
Score = 127 (49.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 231 PDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 290
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 291 EEDCEKAFFKMDNVLIDDRRIHVDF 315
>UNIPROTKB|F1P661 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
Uniprot:F1P661
Length = 526
Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + S V+RD+ TG S Y F+E++
Sbjct: 265 PDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEK 324
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
E+ C A ++ I VDF
Sbjct: 325 EEDCEKAFFKMDNVLIDDRRIHVDF 349
>ASPGD|ASPL0000006999 [details] [associations]
symbol:AN6903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
GO:GO:0030529 EMBL:AACD01000113 eggNOG:COG0724 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OrthoDB:EOG4HMNKR
RefSeq:XP_664507.1 ProteinModelPortal:Q5AXS7 STRING:Q5AXS7
EnsemblFungi:CADANIAT00007705 GeneID:2870614 KEGG:ani:AN6903.2
HOGENOM:HOG000177264 OMA:GRGYTKA Uniprot:Q5AXS7
Length = 373
Score = 125 (49.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 78 STYKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVT--GHSK 132
+ Y P++ DP +TLF+ RL+ + E DLE+ F +G + +R+V+D VT G K
Sbjct: 86 AAYDPNSDPQARGDPFKTLFVSRLSYEATEQDLEREFGRFGPIERIRIVKDTVTPKGAKK 145
Query: 133 R---YGFLEYDCEKAC------LAAIRALNRQNFQGSEIIVDFECGR 170
Y F+ Y+ EK LAA + + + ++VD E GR
Sbjct: 146 PHRGYAFIVYEREKDMKDLIHKLAAYKETDGIRIKDRRVLVDVERGR 192
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 126 (49.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 126 (49.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 126 (49.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 80 YKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGF 136
+ PH D +TLF+ R+N ++ E+ L + F YG + + +V +G + Y F
Sbjct: 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148
Query: 137 LEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+EY+ E+ +A + + + G ++VD E GR
Sbjct: 149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P T + P +LF+ + N+R DL + F YG ++ V V DF T H + + +++++
Sbjct: 1 PATCAPPPNTSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFED 60
Query: 142 EKACLAAIRALNRQNFQGSEIIVDFECG 169
+ A+ L+R+ G +I + F G
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQG 88
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/108 (27%), Positives = 59/108 (54%)
Query: 68 HDRAILRALRSTYKPHTSST---DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVR 124
+D I ++L++ + P+++S DP +T+F+ R++ + + LE F ++G + S+ +V+
Sbjct: 74 NDERISKSLKA-WDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVK 132
Query: 125 DFVTGHSKR-YGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGRV 171
D Y F+E++ E+ AA + + I+VD E GRV
Sbjct: 133 DSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRV 180
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 85 SSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKA 144
+S+ P +L++G L+ + EA L + F+ G V+S+RV RD +T S Y ++ + + A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ-QPA 63
Query: 145 CLAAIRALNRQNF 157
A RAL+ NF
Sbjct: 64 --DAERALDTMNF 74
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/122 (30%), Positives = 57/122 (46%)
Query: 47 PYCIT--YDPIQAGS----IDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNK 100
PYC Y+ A + ++G + D + A ST T +F+G L+
Sbjct: 49 PYCFVEFYENRHAAAALAAMNGRKILGKDMKVNWA--STPSSQKKDTSNHFHVFVGDLSP 106
Query: 101 NSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGS 160
D+ AFA +GK+ RVV+D TG SK YGF+ + + +AI+ +N Q G
Sbjct: 107 EISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGR 166
Query: 161 EI 162
+I
Sbjct: 167 QI 168
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+++G + + E DL F++YG+++ V ++RD TG SK + FL Y+ +++ + A+ L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 153 NRQNFQGSEIIVDFECG 169
N G I VD CG
Sbjct: 98 NGALVLGRTIKVD-HCG 113
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD-CEKACLAAIRA 151
LF+G L+ ++ E LE F++YG++ V VV+D T S+ +GF+ ++ CE A A+
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA-KDAMAG 66
Query: 152 LNRQNFQGSEIIVDFECGR 170
+N + G +I VD + G+
Sbjct: 67 MNGKTVDGRQIRVD-QAGK 84
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + + DLE F+ +G + V+RD TG S +Y F+E++
Sbjct: 231 PDADMAPPENVLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFED 290
Query: 142 EKACLAAIRALNRQNFQGSEIIVDF 166
+K+C AA ++ I VDF
Sbjct: 291 QKSCEAAYFKMDNVLIDDRRIHVDF 315
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 88 DPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLA 147
+P +++G L + LEQ F+E+GKV+ RVV D TG S+ +GF+
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 148 AIRALNRQNFQGSEIIVD 165
AI AL+ QN +G I V+
Sbjct: 301 AISALDGQNLEGRAIRVN 318
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 74 RALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKR 133
+ L+ +Y +SS L+I RL + A+L++ F +G VI +++ D TG S+
Sbjct: 180 KPLKVSYAQASSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRC 239
Query: 134 YGFLEYDCEKACLAAIRALNRQN--FQGSEIIVDF 166
GF+ + + L A+ ++N N FQ + I V F
Sbjct: 240 VGFVHFSQRREALKAVSSMNGANIPFQSTPIYVKF 274
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G++ ++ E DL+ F ++G++ + V++D TG K FL Y + L A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 153 NRQ 155
+ Q
Sbjct: 69 HEQ 71
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 N 153
N
Sbjct: 68 N 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 N 153
N
Sbjct: 68 N 68
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 86 STDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
ST + LF+ L++ + L+ AFA +G+++ RV+ D +G SK +GF+ Y +
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
Query: 146 LAAIRALNRQNFQGSEIIVD 165
A +N + G I VD
Sbjct: 89 EKAKAEMNAKFLDGWVIFVD 108
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG++ +N E DL+ F ++GK+ + V++D TG K FL Y ++ + A AL
Sbjct: 84 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 143
Query: 153 NRQ 155
+ Q
Sbjct: 144 HEQ 146
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVD 165
N ++ G +I VD
Sbjct: 68 NGKSVDGRQIRVD 80
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 80 YKPHTSSTDPT-RTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLE 138
YK D + R++F+G ++ + E + F++ G V+S+++V D TG K YGF+E
Sbjct: 6 YKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIE 65
Query: 139 YDCEKACLAAIRALNRQNFQGSEIIVDFECG 169
+ + AIR LN G + VD G
Sbjct: 66 FPDIQTAEVAIRNLNGYELSGRILRVDSAAG 96
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 122 (48.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140
KP S R LF+G LNK EAD+ Q F +G + V+RD G SK F+ +
Sbjct: 372 KPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRD-QAGQSKGCAFVTFA 430
Query: 141 CEKACLAAIRALNR-QNFQG--SEIIVDF 166
++ + AI+AL++ Q +G + ++V F
Sbjct: 431 TKQNAIGAIKALHQSQTMEGCSAPLVVKF 459
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVKYWYPYCITYDPIQAGSID 61
S S+ N+ S + + ++ ++SQ + + + VKY Y +T +G+I
Sbjct: 67 SSNSNSSSNNHSLYSNNNLNTGNNSQQQQQQQQQHPQILPVKYEYLENLTSSGATSGAIA 126
Query: 62 GTDT 65
T T
Sbjct: 127 ATTT 130
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/166 (24%), Positives = 75/166 (45%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQT---VEPRDAKSSSGQTVKYWYPYCITYDPIQAG 58
S E S+++ S + + S S + +D ++S + T + +
Sbjct: 176 SSESSSSRDRHSESNGNINGSSGGSNRDSKEKQKDLQNSPTTSTSSTSSSNTTTNKESSS 235
Query: 59 SIDGTDTIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVI 118
S T T P + + S+ P RT+F+ +L++N E DL F++ G V+
Sbjct: 236 SSISTSTPPTSSSTTSS--SSTLPEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVL 293
Query: 119 SVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIV 164
+VR++ D VT K G++E+ ++ AI AL+ G +I+V
Sbjct: 294 NVRLITDKVTKRMKGVGYVEFSQKEMVDKAI-ALSGSVLDGQQILV 338
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 81 KPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYD 140
KP + D T L+IG L + L F+ +G+++ +V++D VTG SK YGF++Y
Sbjct: 471 KPPSKEYDETN-LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Query: 141 CEKACLAAIRALNRQNFQGSEIIV 164
+ A++A+N F+G + V
Sbjct: 530 DVQMANTAVQAMNGYRFEGRTLAV 553
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 116 (45.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L +G L+ ++ E LEQ F++YG++ V VV+D T S+ +GF+ ++ A+ A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 153 NRQNFQGSEIIVDFECGR 170
N ++ G +I VD + G+
Sbjct: 68 NGKSVDGRQIRVD-QAGK 84
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 103 (41.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LF+G++ + E DL+ F E+G++ + V++D +TG K FL Y + L A AL
Sbjct: 19 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 78
Query: 153 NRQ 155
+ Q
Sbjct: 79 HEQ 81
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 103 (41.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+++G L+ + +L+ F +YG++ +++ D TG SK + F+ Y + A A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 153 NRQNFQGSEIIVD 165
N + QG +I V+
Sbjct: 80 NGIDLQGRKIRVN 92
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 103 (41.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+++G L+ + +L+ F +YG++ +++ D TG SK + F+ Y + A A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 153 NRQNFQGSEIIVD 165
N + QG +I V+
Sbjct: 80 NGIDLQGRKIRVN 92
>UNIPROTKB|F5GZU3 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 HGNC:HGNC:10520
ChiTaRS:SAFB IPI:IPI00983392 ProteinModelPortal:F5GZU3 SMR:F5GZU3
Ensembl:ENST00000433404 UCSC:uc010xiu.2 ArrayExpress:F5GZU3
Bgee:F5GZU3 Uniprot:F5GZU3
Length = 747
Score = 125 (49.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 4 EQKSAKNSPSSHHSE-VRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ SA + + SE + ++ + + + E RD+K G+ K+ + C + P ++ +
Sbjct: 149 EQSSAASELAEASSEELAEAPTEAPSPEARDSKED-GR--KFDFDACNEVPPAPKESSTS 205
Query: 61 DGTD---TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKV 117
+G D + P D + + L K +S R ++ L+ +R DL+ F++YGKV
Sbjct: 206 EGADQKMSSPEDDSDTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKV 262
Query: 118 ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
+ +VV + + ++ YGF+ + I L++ G I V+
Sbjct: 263 VGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 310
>UNIPROTKB|B7Z2F6 [details] [associations]
symbol:SAFB "cDNA FLJ54744, highly similar to Scaffold
attachment factor B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011499
EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802 HGNC:HGNC:10520
HOVERGEN:HBG078408 ChiTaRS:SAFB EMBL:AK294671 IPI:IPI01018318
SMR:B7Z2F6 STRING:B7Z2F6 Ensembl:ENST00000538656 UCSC:uc010xit.2
Uniprot:B7Z2F6
Length = 759
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 4 EQKSAKNSPSSHHSE-VRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ SA + + SE + ++ + + + E RD+K G+ K+ + C + P ++ +
Sbjct: 162 EQSSAASELAEASSEELAEAPTEAPSPEARDSKED-GR--KFDFDACNEVPPAPKESSTS 218
Query: 61 DGTD---TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKV 117
+G D + P D + + L K +S R ++ L+ +R DL+ F++YGKV
Sbjct: 219 EGADQKMSSPEDDSDTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKV 275
Query: 118 ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
+ +VV + + ++ YGF+ + I L++ G I V+
Sbjct: 276 VGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 323
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
++I + + L F++YG+ +SV+V++D +G SKR+GF+ +D KA A+ +
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVEDM 250
Query: 153 NRQNFQGSEIIV 164
N ++ G I V
Sbjct: 251 NGRDINGQTIFV 262
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 106 (42.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 29/113 (25%), Positives = 52/113 (46%)
Query: 87 TDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACL 146
++P+ TLF+G L+ N+ + + FA++G+V+SVR+ T K +G++++ +
Sbjct: 263 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322
Query: 147 AAIRALNRQNFQGSEIIVDFECGRVXXXXXXXXXXXXXXXNRNSGQLR-FGGR 198
A+ AL + + +DF R G R FGGR
Sbjct: 323 KALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGR 375
Score = 103 (41.3 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 78 STYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFL 137
S K T+ T+F+GRL+ + + L++ F G VI RV+ + T S+ YG++
Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYV 214
Query: 138 EYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
+++ + AI+ + + G I D +
Sbjct: 215 DFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
Score = 54 (24.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
S E S+ +S S SE SS + D++SSS +
Sbjct: 32 SSESSSSSSSSSESESESESESESSSSSSSSDSESSSSSS 71
Score = 52 (23.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVK 43
SD S+ + S E D K S+ E + + SS + K
Sbjct: 119 SDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQK 160
Score = 49 (22.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 3 DEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
+E+ A +S SS S S S S++ +++SSS +
Sbjct: 22 EEKAKAVSSSSSESSSSSSSSSESESESESESESSSSSS 60
Score = 49 (22.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTV--EPRDAKSSSGQT 41
S S+ +S SS S DS+S ++T E +D+ SSS +
Sbjct: 55 SSSSSSSSDSESSSSSS-SDSESEAETKKEESKDSSSSSSDS 95
Score = 47 (21.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
S S+ S S SE S SSS + + SSS
Sbjct: 36 SSSSSSSSESESESESESESSSSSSSSDSESSSSSSS 72
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
+++ +K S SS S S S S+ E D K S
Sbjct: 109 KKEESKESSSSDSSSSSSSDSESEKEESNDKKRKS 143
Score = 45 (20.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
E +S S SS S DS+SSS + ++++ +
Sbjct: 46 ESESESESESSSSSSSSDSESSSSSSSDSESEAET 80
Score = 45 (20.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
S+ + + +S SS SE S SS E K S
Sbjct: 49 SESESESSSSSSSSDSESSSSSSSDSESEAETKKEES 85
Score = 45 (20.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQ 40
S + +S+ +S S SE K S+ + SSS +
Sbjct: 61 SSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDE 99
Score = 44 (20.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 3 DEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
+E K + +S S S+ + + +T + +SSS +
Sbjct: 83 EESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDS 121
Score = 42 (19.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTVE 30
S+ + +++S SS S+ S SSS E
Sbjct: 47 SESESESESSSSSSSSDSESSSSSSSDSE 75
Score = 41 (19.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
E +S S SS S +S SSS + +A++ ++
Sbjct: 48 ESESESESSSSSSSSDSESSSSSSSDSESEAETKKEES 85
Score = 41 (19.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 3 DEQKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVK 43
+E+K S S DS SSS + + + S+ + K
Sbjct: 102 EEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRK 142
Score = 40 (19.1 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 7 SAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
S+ + SS S +S+S S++ + SSS +
Sbjct: 30 SSSSESSSSSSSSSESESESESESESSSSSSSSDS 64
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 101 (40.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
++IGRL+ N RE D+++ F+ YG+++ + D G YGF+E++ + A+ L
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEI----DLKNG----YGFVEFEDSRDADDAVYEL 55
Query: 153 NRQNFQGSEIIVDFECG 169
N + G +IV+ G
Sbjct: 56 NGKELCGERVIVEHARG 72
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 101 (40.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN + E LE F +YG+++ V +++D T S+ + F+ ++ A R +
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 153 NRQNFQGS 160
N + S
Sbjct: 72 NGKGVPSS 79
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 119 (46.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+++G L+ + LE F+E GKV+ RV+ D +G SK +GF+ YD + AI++L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 153 NRQNFQGSEIIV 164
+ + G +I V
Sbjct: 266 DGADLDGRQIRV 277
>UNIPROTKB|Q15424 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001047 "core promoter binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0040007 "growth" evidence=IEA] [GO:0042445
"hormone metabolic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0006325
"chromatin organization" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
SMART:SM00513 GO:GO:0005634 GO:GO:0040007 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0003690 GO:GO:0001047
GO:GO:0042445 GO:GO:0030520 GO:GO:0006325 EMBL:AC011499 EMBL:U72355
EMBL:AK298707 EMBL:AC004611 EMBL:AC134303 EMBL:AB208780 EMBL:L43631
IPI:IPI00300631 IPI:IPI00941773 PIR:S64732 RefSeq:NP_002958.2
UniGene:Hs.728802 ProteinModelPortal:Q15424 SMR:Q15424
IntAct:Q15424 MINT:MINT-1033560 STRING:Q15424 PhosphoSite:Q15424
DMDM:116242782 PaxDb:Q15424 PRIDE:Q15424 Ensembl:ENST00000292123
Ensembl:ENST00000454510 GeneID:6294 KEGG:hsa:6294 UCSC:uc002mcf.3
CTD:6294 GeneCards:GC19P005574 H-InvDB:HIX0014682 HGNC:HGNC:10520
HPA:CAB001969 HPA:HPA016832 HPA:HPA020076 MIM:602895
neXtProt:NX_Q15424 PharmGKB:PA34928 eggNOG:NOG248048
HOGENOM:HOG000092533 HOVERGEN:HBG078408 InParanoid:Q15424
OMA:DKADRKD PhylomeDB:Q15424 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 ArrayExpress:Q15424 Bgee:Q15424 CleanEx:HS_SAFB
Genevestigator:Q15424 GermOnline:ENSG00000160633 Uniprot:Q15424
Length = 915
Score = 125 (49.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 4 EQKSAKNSPSSHHSE-VRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ SA + + SE + ++ + + + E RD+K G+ K+ + C + P ++ +
Sbjct: 319 EQSSAASELAEASSEELAEAPTEAPSPEARDSKED-GR--KFDFDACNEVPPAPKESSTS 375
Query: 61 DGTD---TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKV 117
+G D + P D + + L K +S R ++ L+ +R DL+ F++YGKV
Sbjct: 376 EGADQKMSSPEDDSDTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKV 432
Query: 118 ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
+ +VV + + ++ YGF+ + I L++ G I V+
Sbjct: 433 VGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 480
>UNIPROTKB|B7ZLP6 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC011499 EMBL:AC004611
EMBL:AC134303 UniGene:Hs.728802 GeneID:6294 KEGG:hsa:6294 CTD:6294
HGNC:HGNC:10520 HOVERGEN:HBG078408 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 EMBL:BC143939 IPI:IPI00646058 RefSeq:NP_001188268.1
ProteinModelPortal:B7ZLP6 STRING:B7ZLP6 PRIDE:B7ZLP6
Ensembl:ENST00000592224 UCSC:uc002mce.4 Bgee:B7ZLP6 Uniprot:B7ZLP6
Length = 916
Score = 125 (49.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 4 EQKSAKNSPSSHHSE-VRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ SA + + SE + ++ + + + E RD+K G+ K+ + C + P ++ +
Sbjct: 319 EQSSAASELAEASSEELAEAPTEAPSPEARDSKED-GR--KFDFDACNEVPPAPKESSTS 375
Query: 61 DGTD---TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKV 117
+G D + P D + + L K +S R ++ L+ +R DL+ F++YGKV
Sbjct: 376 EGADQKMSSPEDDSDTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKV 432
Query: 118 ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
+ +VV + + ++ YGF+ + I L++ G I V+
Sbjct: 433 VGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 480
>UNIPROTKB|A0AV56 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802
GeneID:6294 KEGG:hsa:6294 CTD:6294 HGNC:HGNC:10520
HOGENOM:HOG000092533 HOVERGEN:HBG078408 ChiTaRS:SAFB
GenomeRNAi:6294 NextBio:24435 OrthoDB:EOG4F4S9X EMBL:BC126219
EMBL:BC143937 IPI:IPI00983392 RefSeq:NP_001188267.1
ProteinModelPortal:A0AV56 SMR:A0AV56 STRING:A0AV56 PRIDE:A0AV56
Ensembl:ENST00000588852 UCSC:uc002mcg.3 ArrayExpress:A0AV56
Bgee:A0AV56 Uniprot:A0AV56
Length = 917
Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 4 EQKSAKNSPSSHHSE-VRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ SA + + SE + ++ + + + E RD+K G+ K+ + C + P ++ +
Sbjct: 319 EQSSAASELAEASSEELAEAPTEAPSPEARDSKED-GR--KFDFDACNEVPPAPKESSTS 375
Query: 61 DGTD---TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKV 117
+G D + P D + + L K +S R ++ L+ +R DL+ F++YGKV
Sbjct: 376 EGADQKMSSPEDDSDTKRLSKEEKGRSSCG---RNFWVSGLSSTTRATDLKNLFSKYGKV 432
Query: 118 ISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
+ +VV + + ++ YGF+ + I L++ G I V+
Sbjct: 433 VGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE 480
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 120 (47.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 70 RAILRALRSTYKPHTSST---DPTRT-LFIGRLNKNSREADLEQAFAEYGKVISVRVVRD 125
R + + + Y+ H + D RT L + L +N + +L F+ G+V S +++RD
Sbjct: 22 RFLKNTMSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 81
Query: 126 FVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
V GHS YGF+ Y K AI LN Q I V +
Sbjct: 82 KVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 122
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEY 139
+F+G L+ D++ AFA +G++ RVV+D TG SK YGF+ +
Sbjct: 89 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 122 (48.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 44/181 (24%), Positives = 86/181 (47%)
Query: 2 SDEQKSAK-NSPSSHHSEVRDSKSSSQTVEPR----DAKSSSGQTVKYWYPYCITYDPIQ 56
S+E++ K + ++ S+ DS S S+ P DAK+S ++ + D +
Sbjct: 176 SEEEEVPKAKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSESSSDSDE 235
Query: 57 AGSIDGTDTIPHDR-AILRALRSTYKPHTSS----TDP--TRTLFIGRLNKNSREADLEQ 109
G+++ D+ A + ++ +P +S T+ + LF+G L+ N E L Q
Sbjct: 236 ESGSSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQ 295
Query: 110 AFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECG 169
F ++G+ +S R++ + TG S+ +G++E+ A A+ G +I +D+ G
Sbjct: 296 EFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATG 354
Query: 170 R 170
R
Sbjct: 355 R 355
Score = 105 (42.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 87 TDP-TRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKAC 145
T P + TLF+G L ++ E + + F G V+ +R+ D +G K +G+++Y
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 146 LAAIRALNRQNFQGSEIIVDFECGR 170
A L G I +DF R
Sbjct: 439 RKAYNELQGAEIDGRPIRLDFSTPR 463
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 5 QKSAKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQT 41
+K AK + SS SE S SS E +DA SS +
Sbjct: 99 KKEAKKAESSSESE---SDSSDSDEEMKDASSSESDS 132
Score = 47 (21.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 SDEQ-KSAKNSPSSHHSEVRDSK--SSSQTVEPRDAKSS 37
SDE+ K A +S S SE + K + S EP+ K +
Sbjct: 118 SDEEMKDASSSESDSESESEEEKKPAKSAKAEPKVVKKA 156
Score = 47 (21.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 2 SDEQKSAKNSPSSHHSEVRDSKSSSQTV--EPRDAKSSS 38
S+ + +++ SS SE D K + V E + A+SSS
Sbjct: 71 SESESESESDSSSSESESEDEKPVKKEVKKEAKKAESSS 109
>MGI|MGI:2146808 [details] [associations]
symbol:Safb2 "scaffold attachment factor B2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
MGI:MGI:2146808 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
eggNOG:NOG248048 HOGENOM:HOG000092533 HOVERGEN:HBG078408
OrthoDB:EOG4F4S9X CTD:9667 OMA:GTEDNGL ChiTaRS:SAFB2 EMBL:BC050855
EMBL:BC028827 IPI:IPI00857736 RefSeq:NP_001025150.2
UniGene:Mm.214973 UniGene:Mm.482517 ProteinModelPortal:Q80YR5
SMR:Q80YR5 PhosphoSite:Q80YR5 PaxDb:Q80YR5 PRIDE:Q80YR5
Ensembl:ENSMUST00000075510 GeneID:224902 KEGG:mmu:224902
UCSC:uc008dcg.1 NextBio:377444 Bgee:Q80YR5 CleanEx:MM_SAFB2
Genevestigator:Q80YR5 GermOnline:ENSMUSG00000042625 Uniprot:Q80YR5
Length = 991
Score = 125 (49.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 40/169 (23%), Positives = 81/169 (47%)
Query: 4 EQKS-AKNSPSSHHSEVRDSKSSSQTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGSI 60
EQ S A P + E+ + +++ + EP+D+K K+ + C + P ++ +
Sbjct: 362 EQSSTAAQLPEATSQELVRAPTAALSPEPQDSKED---VKKFAFDACNDVPAPPKESSAS 418
Query: 61 DGTD----TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGK 116
+G D ++ ++ I ++ + +S R L++ L+ ++R ADL+ F+++GK
Sbjct: 419 EGADQKMSSVKEEQDIKPVIKD--EKGRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGK 476
Query: 117 VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
VI +VV + + ++ YGF+ I L+R G I V+
Sbjct: 477 VIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVE 525
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
P +L++G L+ + EA L + F+ G ++S+RV RD +T S Y ++ + + A A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ-QPA--DA 65
Query: 149 IRALNRQNF 157
RAL+ NF
Sbjct: 66 ERALDTMNF 74
>UNIPROTKB|E5RHG7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00980706
ProteinModelPortal:E5RHG7 SMR:E5RHG7 Ensembl:ENST00000522720
ArrayExpress:E5RHG7 Bgee:E5RHG7 Uniprot:E5RHG7
Length = 75
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
P +L++G L+ + EA L + F+ G ++S+RV RD +T S Y ++ + + A A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ-QPA--DA 65
Query: 149 IRALNRQNF 157
RAL+ NF
Sbjct: 66 ERALDTMNF 74
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 89 PTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAA 148
P +L++G L+ + EA L + F+ G ++S+RV RD +T S Y ++ + + A A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ-QPA--DA 65
Query: 149 IRALNRQNF 157
RAL+ NF
Sbjct: 66 ERALDTMNF 74
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L+I L ++ + DL + YGK++S + + D T K YGF+++D A A+ AL
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 90
Query: 153 NRQNFQ 158
Q
Sbjct: 91 KASGVQ 96
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN + E LE F +YG+++ V +++D T S+ + F+ ++ A R +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 153 N 153
N
Sbjct: 70 N 70
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 100 (40.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
LFIG LN + E LE F +YG+++ V +++D T S+ + F+ ++ A R +
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 153 N 153
N
Sbjct: 72 N 72
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 117 (46.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/114 (30%), Positives = 53/114 (46%)
Query: 59 SIDGTDTIPHDRAILRALRSTYKPHTSSTDPT--RTLFIGRLNKNSREADLEQAFAEYGK 116
++DGT+ + RA+ KP+ P LF+G L+ L AF E G
Sbjct: 145 NLDGTEYL--GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 117 VISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDFECGR 170
V+ RVV D TG S+ YGF+ Y + A+ +L+ +G I V+ G+
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 118 (46.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 29/97 (29%), Positives = 55/97 (56%)
Query: 70 RAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTG 129
RAI L+ + + P++TLF+ L++++ E L+++F G V R+V D TG
Sbjct: 176 RAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETG 232
Query: 130 HSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
SK +GF++++ E+ AA A+ G+++ +D+
Sbjct: 233 SSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 269
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 28/93 (30%), Positives = 54/93 (58%)
Query: 74 RALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKR 133
R +R + S + P++TLF+ L++++ E L+++F G V R+V D TG SK
Sbjct: 552 RTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKG 608
Query: 134 YGFLEYDCEKACLAAIRALNRQNFQGSEIIVDF 166
+GF++++ E+ AA A+ G+++ +D+
Sbjct: 609 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 641
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 119 (46.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
+++G LN + E D+ F++YG++ +VR+ TG S+ + F+ YD +K+ + A+ L
Sbjct: 35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94
Query: 153 NRQNFQGSEIIVD 165
N N G I VD
Sbjct: 95 NGINLLGKTIKVD 107
>DICTYBASE|DDB_G0292710 [details] [associations]
symbol:DDB_G0292710 "peptidylprolyl isomerase"
species:44689 "Dictyostelium discoideum" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0292710 GO:GO:0006457
GO:GO:0000166 EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
KO:K12735 OMA:DRTQNRS RefSeq:XP_629577.1 ProteinModelPortal:Q54CU3
STRING:Q54CU3 EnsemblProtists:DDB0215524 GeneID:8628838
KEGG:ddi:DDB_G0292710 InParanoid:Q54CU3 ProtClustDB:CLSZ2846584
Uniprot:Q54CU3
Length = 489
Score = 121 (47.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/90 (36%), Positives = 41/90 (45%)
Query: 82 PHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDC 141
P P LF+ +LN + DLE F++ G V S VVRD VT S Y F+EY
Sbjct: 234 PSADIRPPDHVLFVCKLNPITEAEDLELVFSQCGTVKSCEVVRDKVTNDSLCYAFVEYST 293
Query: 142 EKACLAAIRALNRQNFQGSEIIVDFECGRV 171
++ C A L I VDF C V
Sbjct: 294 KEECEKAYLKLENILIDERRIHVDF-CQSV 322
>UNIPROTKB|J9JHN8 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:AAEX03012513
Ensembl:ENSCAFT00000045160 Uniprot:J9JHN8
Length = 954
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 38/170 (22%), Positives = 74/170 (43%)
Query: 4 EQKSAKNSPSSHHSEVRDSKSSS--QTVEPRDAKSSSGQTVKYWYPYC--ITYDPIQAGS 59
E+ ++S +S H+E +++ Q D + S K+ + C + P ++ +
Sbjct: 314 EKPVEQSSKASEHTEASSEEAAEAPQEASSPDPRDSKEDVKKFAFEACNEVPPAPKESSA 373
Query: 60 IDGTD----TIPHDRAILRALRSTYKPHTSSTDPTRTLFIGRLNKNSREADLEQAFAEYG 115
+G D + ++ I ++ T S R L++ L+ +R DL+ F +YG
Sbjct: 374 SEGADQKMSSFKEEKDIKPIIKDEKAGRTGSNSG-RNLWVSGLSSTTRATDLKNLFNKYG 432
Query: 116 KVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRALNRQNFQGSEIIVD 165
KV+ +VV + + ++ YGF+ I L+R G I V+
Sbjct: 433 KVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVE 482
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 108 (43.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 93 LFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCEKACLAAIRAL 152
L+IGR+ E ++E F+++G V VRV R+ TG SK +GF++++ + A A+
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 153 N 153
N
Sbjct: 122 N 122
Score = 39 (18.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 8 AKNSPSSHHSEVRDSKSSSQTVEPRDAKSSS 38
AK + + +V S SSSQ P++ K S+
Sbjct: 5 AKKALKKNMKKVAASASSSQLPLPQNPKPSA 35
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 83 HTSSTDPTRTLFIGRLNKNSREADLEQAFAEYGKVISVRVVRDFVTGHSKRYGFLEYDCE 142
H + + RTL+IG L E L F++ G+++SV+V+R+ +TG + YGF+E+
Sbjct: 16 HPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISH 75
Query: 143 KACLAAIRALNRQNFQGSEI 162
A ++ N G+E+
Sbjct: 76 AAAERTLQTYNGTQMPGTEL 95
WARNING: HSPs involving 210 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 225 210 0.00080 112 3 11 23 0.40 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 460
No. of states in DFA: 597 (63 KB)
Total size of DFA: 180 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:06
No. of threads or processors used: 24
Search cpu time: 19.16u 0.08s 19.24t Elapsed: 00:00:16
Total cpu time: 19.19u 0.08s 19.27t Elapsed: 00:00:22
Start: Thu Aug 15 14:27:22 2013 End: Thu Aug 15 14:27:44 2013
WARNINGS ISSUED: 2