BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2222
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUG|A Chain A, Solution Structure Of Mouse Frg1 Protein
Length = 155
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 97/137 (70%), Gaps = 2/137 (1%)
Query: 50 WTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSK 108
W V + +I G I+IE K ++ ALDNGLF LGA H E EGPSP E FTA+ ++DS+
Sbjct: 14 WWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSR 73
Query: 109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSI 168
+A KSG+ KYL I+ +G V GRSDA+GP EQWEPVF+D MALL +N CF+ +E D I
Sbjct: 74 IALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-I 132
Query: 169 VATSRKAGKNEMVKLRS 185
A ++ AG+ EM+K+RS
Sbjct: 133 EAKNKTAGEEEMIKIRS 149
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 95 PEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGR-----SDAVGPLEQWEPVFEDDNM 149
PE I TA+ N A S F K +S + G+ TG +D G E+++ F
Sbjct: 65 PENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAA 124
Query: 150 ALLGANQCFMSVSEQDDSIVAT 171
G+ ++ V+ + I++T
Sbjct: 125 GRFGSGWAWLVVNNGEIEIMST 146
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 119 LSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKN 178
L + ++G++ +D + N L+G ++C ++E + RKAG +
Sbjct: 21 LLVSEDGKILAEADGL-----------STNHWLIGTDKCVERINEMVNR---AKRKAGVD 66
Query: 179 EMVKLRSNSLHLKNLDKDD 197
+V LRS L L D++D
Sbjct: 67 PLVPLRSLGLSLSGGDQED 85
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 119 LSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKN 178
L + ++G++ +D + N L+G ++C ++E + RKAG +
Sbjct: 18 LLVSEDGKILAEADGL-----------STNHWLIGTDKCVERINEMVNR---AKRKAGVD 63
Query: 179 EMVKLRSNSLHLKNLDKDD 197
+V LRS L L D++D
Sbjct: 64 PLVPLRSLGLSLSGGDQED 82
>pdb|2PBZ|A Chain A, Crystal Structure Of An Imp Biosynthesis Protein Purp From
Thermococcus Kodakaraensis
pdb|2PBZ|B Chain B, Crystal Structure Of An Imp Biosynthesis Protein Purp From
Thermococcus Kodakaraensis
pdb|2PBZ|C Chain C, Crystal Structure Of An Imp Biosynthesis Protein Purp From
Thermococcus Kodakaraensis
Length = 320
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 100 TAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFM 159
T+IL +D V F YL I+ + R +WE FE + AL GA +
Sbjct: 55 TSILNDDGIVVPHGSFVAYLGIEAIEKAKARFFGNRRFLKWETTFELQDKALEGAGIPRV 114
Query: 160 SVSEQDDS 167
V E +D+
Sbjct: 115 EVVEPEDA 122
>pdb|3SJN|A Chain A, Crystal Structure Of Enolase Spea_3858 (Target Efi-500646)
From Shewanella Pealeana With Magnesium Bound
pdb|3SJN|B Chain B, Crystal Structure Of Enolase Spea_3858 (Target Efi-500646)
From Shewanella Pealeana With Magnesium Bound
Length = 374
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 35 SNSKQVDPDIENYAGWTQVKHIKDIV---GAISIEFGKRT---------FVSALDNGLFI 82
SN+ V PDI G T++K I DI G I G T F++A + G +
Sbjct: 267 SNADIVQPDITRCGGITEMKKIYDIAQMNGTQLIPHGFSTGILLHASVHFLAACEQGTLM 326
Query: 83 LGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGF 115
E + SP +FT+++ N ++ F +GF
Sbjct: 327 -----EFSQSSSP--LFTSLVKN--QLQFDNGF 350
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 71 TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
+F+ LD +L +H D G PE + V +KV KSGF KYL+
Sbjct: 46 SFLDKLD--YIVLTHLHIDHIGLLPE----LLQVYKAKVLVKSGFKKYLT 89
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 73 VSALDNGLFILGAIHEDKEGPS-PEEIFTAILVNDSKVAFKSGF--DKYLSIDKNGRVTG 129
+S L G + L A K G S PE+I + + K ++ F D + + GR++
Sbjct: 152 ISCLAQGFYALKAAELIKNGASSPEDIIKEL--EEMKKTVRAYFMVDDLAHLQRGGRLSS 209
Query: 130 RSDAVGPLEQWEPVFEDDNMALL 152
+G L + +P+ DN ++
Sbjct: 210 AQAFIGSLLKVKPILHFDNKVIV 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,749,513
Number of Sequences: 62578
Number of extensions: 259123
Number of successful extensions: 799
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 10
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)