BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2222
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VWA8|FRG1_DROME Protein FRG1 homolog OS=Drosophila melanogaster GN=CG6480 PE=1 SV=1
Length = 262
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 8/267 (2%)
Query: 1 MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQ---VDPDIENYAGWTQVKHIK 57
MS+Y + KLVLKGEK K KK+ K +A GS+ K VD D + GW K
Sbjct: 1 MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEA-GSSKKAKVVVDEDAVKHGGWWAAKTAA 59
Query: 58 DIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDK 117
DI G +SIEFG R+++ A+DNGLF LGA H +GP PEEIFTA +ND KVAFKSG+ K
Sbjct: 60 DITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEIFTAFPINDRKVAFKSGYGK 119
Query: 118 YLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGK 177
YL I+K+G VTGRS+AVG +EQWEPVFE+ MALL FMS+ QDD+ VA +K G+
Sbjct: 120 YLKIEKDGMVTGRSEAVGGMEQWEPVFEEQRMALLSETGHFMSIDPQDDACVALRKKVGQ 179
Query: 178 NEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVL 237
+E+ K+RSN+ +D + P+EE+ + L ++E NYVKKFQKFQDKK+++N +++ L
Sbjct: 180 HEICKVRSNASRDVVIDTE---PKEEKGD-LGEVEKNYVKKFQKFQDKKMRINQNDVKEL 235
Query: 238 KEAKAQGYLHETMLDRRSKMKADRYCK 264
++AKAQG LHET+LDRRSKMKADRYCK
Sbjct: 236 EQAKAQGSLHETLLDRRSKMKADRYCK 262
>sp|O73747|FRG1_TAKRU Protein FRG1 OS=Takifugu rubripes GN=frg1 PE=2 SV=1
Length = 255
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/264 (49%), Positives = 174/264 (65%), Gaps = 9/264 (3%)
Query: 1 MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
M+EY VK KLVLKG+K KK K +A + K PDI GW VK ++
Sbjct: 1 MAEYTKVKSTKLVLKGQKQGKKHKHKDRKRKATDEDEK---PDI--VGGWWVVKSFVEMN 55
Query: 61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
G +++E ++ ALD+GLF LGA H+D EGP P E FT I ++DS++A KSG+ +YL
Sbjct: 56 GTVALEMQNNAYIHALDSGLFTLGAPHKDDEGPDPPEQFTTIKLSDSRIALKSGYGRYLG 115
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I+ G V GRSDA+GP EQWEPVF+D MALL AN CF+S S+ D IVA S+ AG EM
Sbjct: 116 INSEGLVVGRSDAIGPREQWEPVFQDGKMALLAANSCFISYSDSGD-IVANSKTAGDEEM 174
Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
+K+R+++ + DD+ EE+R N + E+NYVKKFQ FQD+++++N + LK+A
Sbjct: 175 LKIRTSA--ERETRSKDDLAEEDRGN-VKSCEVNYVKKFQSFQDRRLRVNEGDSMTLKKA 231
Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
+ G HE +LDRRSKMKADRYCK
Sbjct: 232 RTDGKFHEALLDRRSKMKADRYCK 255
>sp|Q14331|FRG1_HUMAN Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1
Length = 258
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/265 (50%), Positives = 181/265 (68%), Gaps = 8/265 (3%)
Query: 1 MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
M+EY VK KLVLKG K KKKK+K + ++ DI W V + +I
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKR-EEDEETQLDIVGI--WWTVTNFGEIS 57
Query: 61 GAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
G I+IE K T++ ALDNGLF LGA H E EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct: 58 GTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117
Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
I+ +G V GRSDA+GP EQWEPVF++ MALL +N CF+ +E D I A S+ AG+ E
Sbjct: 118 GINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGD-IEAKSKTAGEEE 176
Query: 180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKE 239
M+K+RS + + K DDIPEE++ N + E+NYVKKFQ FQD K+K++ ++ +LK+
Sbjct: 177 MIKIRSCA--ERETKKKDDIPEEDKGN-VKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233
Query: 240 AKAQGYLHETMLDRRSKMKADRYCK 264
A+ G+LHET+LDRR+K+KADRYCK
Sbjct: 234 ARKDGFLHETLLDRRAKLKADRYCK 258
>sp|P97376|FRG1_MOUSE Protein FRG1 OS=Mus musculus GN=Frg1 PE=1 SV=2
Length = 258
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/265 (50%), Positives = 180/265 (67%), Gaps = 8/265 (3%)
Query: 1 MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
M+EY VK KLVLKG K KKKK+K + ++ DI W V + +I
Sbjct: 1 MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKR-EEDEETQLDIVGI--WWTVSNFGEIS 57
Query: 61 GAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
G I+IE K ++ ALDNGLF LGA H E EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct: 58 GTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117
Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
I+ +G V GRSDA+GP EQWEPVF+D MALL +N CF+ +E D I A ++ AG+ E
Sbjct: 118 GINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-IEAKNKTAGEEE 176
Query: 180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKE 239
M+K+RS + + K DDIPEE++ + + E+NYVKKFQ FQD K+K++ ++ +LK+
Sbjct: 177 MIKIRSCA--ERETKKKDDIPEEDKGS-VKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233
Query: 240 AKAQGYLHETMLDRRSKMKADRYCK 264
A+ G+LHET+LDRR+K+KADRYCK
Sbjct: 234 ARKDGFLHETLLDRRAKLKADRYCK 258
>sp|Q9BZ01|FRG1B_HUMAN Protein FRG1B OS=Homo sapiens GN=FRG1B PE=2 SV=1
Length = 182
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 122/174 (70%), Gaps = 6/174 (3%)
Query: 80 LFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQ 139
+F+ +H K+GPSP E F A+ ++DS++A KSG+ KYL I+ + + G SDA+GP EQ
Sbjct: 12 VFLPWELH-TKKGPSPPEQFMAVKLSDSRIALKSGYGKYLGINSD-ELVGHSDAIGPREQ 69
Query: 140 WEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDI 199
WEPVF++ MALL +N CF+ +E D I A S+ AG+ EM+K+RS + K K DDI
Sbjct: 70 WEPVFQNGKMALLASNSCFIRCNEAGD-IEAKSKTAGEEEMIKIRSCAE--KETKKKDDI 126
Query: 200 PEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDR 253
PEE++ N + E+NYVKKFQ FQD K+K++ + +LK+A+ G+LHET+LDR
Sbjct: 127 PEEDKGN-VKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 179
>sp|O18282|FRG1_CAEEL Protein FRG1 homolog OS=Caenorhabditis elegans GN=frg-1 PE=3 SV=2
Length = 274
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 155/279 (55%), Gaps = 25/279 (8%)
Query: 2 SEYQAVKRGKLVLKGEKPAKKK---KKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKD 58
++Y AVK G L LK A KK K K + + + +++DPD GW ++ D
Sbjct: 4 ADYSAVKGGGLKLK----AGKKNLFKVGKEKKKKNKDDKEKIDPDTVENGGWRKIADEFD 59
Query: 59 IVG----AISIEFG---KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAI-LVNDSKVA 110
+ G AI + G RT+V+A+DNG F +G H + EGP+PEEIF + +DSK++
Sbjct: 60 MKGGTNVAIEVASGAGSTRTYVAAMDNGKFTIGFPHPEGEGPNPEEIFALVKTPDDSKIS 119
Query: 111 FKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLG-ANQCFMS-VSEQDDSI 168
K+GF +Y+ +D ++ ++A+G EQ+ VF++ A ++ F+S V ++ I
Sbjct: 120 LKTGFGRYVGVDSEYQLVAMAEAIGSREQFVLVFQEGKTAFQAVSSPLFLSTVPNKEGHI 179
Query: 169 VATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQK----FQD 224
SR A +NEMV +R++++ +D E+R N + E YVK +Q ++
Sbjct: 180 YVASRTATENEMVNIRTDAIQEGPVDWRS---VEDRKNA-RECETAYVKMYQHSKVDLKN 235
Query: 225 KKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYC 263
+ I ++ + +K+A+A G HE +LDRR KMK+DRYC
Sbjct: 236 RHIAIDVKDKKGVKKAQADGSAHELLLDRRMKMKSDRYC 274
>sp|Q9P7X3|FRG1_SCHPO Protein frg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=frg1 PE=3 SV=1
Length = 245
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 25/183 (13%)
Query: 89 DKEGPSPE---EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE 145
DK PE ++F ++N++ + KS KY+S K+G + +AVG EQW + E
Sbjct: 78 DKVSLEPELTRQVFLLSILNNT-ILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQW--IAE 134
Query: 146 DDNMALLG----ANQCFMSVS--EQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDI 199
+ + + ++++S +QD +I S ++R + LK
Sbjct: 135 NLGSGFWAWKSVSTKKYLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLK-------- 186
Query: 200 PEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKA 259
+ + L D + ++ + +K L++D LK+A +G LHE +LD R ++
Sbjct: 187 ---KNKSSLFDNPTIHSRQLESMAGRK--LSTDEKKTLKKAFKEGVLHEALLDLRVSSRS 241
Query: 260 DRY 262
D+Y
Sbjct: 242 DKY 244
>sp|Q5HHS1|Y812_STAAC DegV domain-containing protein SACOL0812 OS=Staphylococcus aureus
(strain COL) GN=SACOL0812 PE=4 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|Q6GIP2|Y803_STAAR DegV domain-containing protein SAR0803 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0803 PE=4 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|Q6GB81|Y714_STAAS DegV domain-containing protein SAS0714 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0714 PE=4 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|Q8NXM4|Y711_STAAW DegV domain-containing protein MW0711 OS=Staphylococcus aureus
(strain MW2) GN=MW0711 PE=4 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|P0A0N2|YU230_STAAU DegV domain-containing protein OS=Staphylococcus aureus PE=4 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|P0A0N0|Y749_STAAM DegV domain-containing protein SAV0749 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0749 PE=1 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|P0A0N1|Y704_STAAN DegV domain-containing protein SA0704 OS=Staphylococcus aureus
(strain N315) GN=SA0704 PE=1 SV=1
Length = 288
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 73 VSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID------KNGR 126
++A+ G ++L AI +EG P++I D + YL +D K+GR
Sbjct: 120 LAAMIEGCYVLRAIEMVEEGYEPQQII------DDLTNMREHTGAYLIVDDLKNLQKSGR 173
Query: 127 VTGRSDAVGPLEQWEPV--FED 146
+TG VG L + +PV FED
Sbjct: 174 ITGAQAWVGTLLKMKPVLKFED 195
>sp|Q8XPD7|Y026_CLOPE DegV domain-containing protein CPE0026 OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE0026 PE=4 SV=1
Length = 291
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 71 TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGR 130
T + L GL + A K+G S +EI++ + N +K+ D + + GR++
Sbjct: 122 TRAACLGQGLLVYYAAQMKKDGKSIDEIYSWVEENKNKLCHYFTVDSLDHLKRGGRISST 181
Query: 131 SDAVGPLEQWEPVF 144
+ A+G L +P+
Sbjct: 182 AAAIGSLLSIKPML 195
>sp|Q91837|FASC_XENLA Fascin OS=Xenopus laevis GN=fscn PE=2 SV=1
Length = 483
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 107 SKVAFKSGFDKYLSIDKNGRVTGRSDAVGP 136
S V +S ++LS DK+G+V+G SD GP
Sbjct: 50 SAVLLRSHLGRFLSADKDGKVSGESDTAGP 79
>sp|Q9QZ08|NAGK_MOUSE N-acetyl-D-glucosamine kinase OS=Mus musculus GN=Nagk PE=2 SV=3
Length = 343
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 117 KYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAG 176
K L + ++G++ +D + N L+G +QC ++E D +KAG
Sbjct: 16 KVLLLSEDGQILAEADGL-----------STNHWLIGTDQCVERINEMVDR---AKQKAG 61
Query: 177 KNEMVKLRSNSLHLKNLDKDDDIPE--EERTNKLSDIELNYV 216
+ +V LRS L L +++D + EE ++ ++ NY+
Sbjct: 62 VDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYL 103
>sp|Q8RYL0|LCB2C_ORYSJ Long chain base biosynthesis protein 2c OS=Oryza sativa subsp.
japonica GN=Os01g0928700 PE=3 SV=1
Length = 497
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 150 ALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLS 209
AL+G +S S +SIV +R +G + V +N HL+ + ++ + RT++
Sbjct: 188 ALIGKGGLIISDSLNHNSIVNGARGSGASVQVFQHNNPAHLEEVLREQIAGGQPRTHRRW 247
Query: 210 DIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHE 248
+ V+ + + KL + +AV K+ KA YL E
Sbjct: 248 KKIIVIVEGIYSMEGELCKL-PEIVAVCKKYKAYTYLDE 285
>sp|B0TZ09|PNP_FRAP2 Polyribonucleotide nucleotidyltransferase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=pnp PE=3 SV=1
Length = 693
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D I+A R N
Sbjct: 112 I------------VATVLSYDGSFSPDMLALIGASASLAISGAPYDDIIAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N LK D D
Sbjct: 160 YILNPNKEELKESDLD 175
>sp|Q5LHG9|AROA_BACFN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=aroA PE=3
SV=1
Length = 410
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 181 VKLRSNSLHLKNLDKD-DDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLK- 238
++L+ N ++ LD+D DIP+ +T ++ LN +F Q KIK +D I LK
Sbjct: 267 IRLKKNGTCVERLDEDFVDIPDLAQTFVVTCALLNVPFRFTGLQSLKIK-ETDRIEALKT 325
Query: 239 EAKAQGYL 246
E K GY+
Sbjct: 326 EMKKLGYI 333
>sp|Q64YD8|AROA_BACFR 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bacteroides
fragilis (strain YCH46) GN=aroA PE=3 SV=1
Length = 410
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 181 VKLRSNSLHLKNLDKD-DDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLK- 238
++L+ N ++ LD+D DIP+ +T ++ LN +F Q KIK +D I LK
Sbjct: 267 IRLKKNGTCVERLDEDFVDIPDLAQTFVVTCALLNVPFRFTGLQSLKIK-ETDRIEALKT 325
Query: 239 EAKAQGYL 246
E K GY+
Sbjct: 326 EMKKLGYI 333
>sp|Q5JK39|LCB2D_ORYSJ Long chain base biosynthesis protein 2d OS=Oryza sativa subsp.
japonica GN=Os01g0928800 PE=2 SV=1
Length = 489
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 150 ALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLS 209
AL+G +S S +SIV +R +G V +N HL+ + ++ + RT++
Sbjct: 180 ALVGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNNPAHLEEVLREQIAGGQPRTHRPW 239
Query: 210 DIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHE 248
+ V+ + + KL + IAV K+ KA YL E
Sbjct: 240 KKIIVIVEGIYSMEGELCKL-PEVIAVCKKYKAYTYLDE 277
>sp|Q2A269|PNP_FRATH Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain LVS) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|A7NDP3|PNP_FRATF Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain FTNF002-00 / FTA) GN=pnp PE=3
SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|Q0BKU1|PNP_FRATO Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. holarctica (strain OSU18) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|A0Q5I9|PNP_FRATN Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. novicida (strain U112) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|Q5NGX7|PNP_FRATT Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4) GN=pnp PE=3
SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|Q14IC9|PNP_FRAT1 Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. tularensis (strain FSC 198) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|B2SDK7|PNP_FRATM Polyribonucleotide nucleotidyltransferase OS=Francisella tularensis
subsp. mediasiatica (strain FSC147) GN=pnp PE=3 SV=1
Length = 693
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEG-PSPEEIFTAILVNDS-KVAFKSGFDKYLS 120
+S+ + ++T+ + G F+ +EG PS E+I + L++ S + +F GF +
Sbjct: 58 LSVHYLEKTYAAGKIPGGFL------RREGRPSEEQILISRLIDRSIRPSFPDGFFNEIQ 111
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
I V + ++ F D +AL+GA+ D +VA R N
Sbjct: 112 I------------VATVLSYDGAFSPDILALIGASASLAISGAPYDDVVAGVRVGYTNGK 159
Query: 181 VKLRSNSLHLKNLDKD 196
L N L++ D D
Sbjct: 160 YILNPNKQDLRDSDLD 175
>sp|Q8RYL1|LCB2B_ORYSJ Long chain base biosynthesis protein 2b OS=Oryza sativa subsp.
japonica GN=Os01g0928600 PE=2 SV=1
Length = 499
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 150 ALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLS 209
AL+G +S S +SIV+ +R +G V +N HL+ L ++ + RT++
Sbjct: 191 ALIGKGGLIISDSLNHNSIVSGARASGATIRVFEHNNPAHLEKLLREQISGGQPRTHRAW 250
Query: 210 DIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHE 248
L V+ + + KL + I+V K+ K Y+ E
Sbjct: 251 KKILVIVEGIYSMEGELCKL-PEIISVCKKYKVYTYMDE 288
>sp|P26833|Y189_CLOPE Uncharacterized HTH-type transcriptional regulator CPE0189
OS=Clostridium perfringens (strain 13 / Type A)
GN=CPE0189 PE=4 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 142 PVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKL----RSNSLHLKNLDKDD 197
PV + M ++ S++ DD IVA S E++K + N + L +D
Sbjct: 161 PVTDSHTMVIMS------SITNDDDVIVAISNSGTTKEVIKTVKQAKENGTKIITLTEDS 214
Query: 198 DIPEEERTNKLSDIELNYVKKFQKFQDKKI 227
D P KLSD EL Y F+ I
Sbjct: 215 DNP----LRKLSDYELTYTSAETIFETGSI 240
>sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=1 SV=3
Length = 2213
Score = 31.2 bits (69), Expect = 7.9, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 73 VSALDNGLF----ILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVT 128
V+A+ GL I + D G + + I + + F+ G+D SI + V
Sbjct: 1048 VTAVGTGLVTSSTISSGVPPDLPGAPSNLVISNISPRSATLQFRPGYDGKTSISR-WIVE 1106
Query: 129 GRSDAVGPLEQWEPVFEDDN 148
G+ A+G E+W ++E++N
Sbjct: 1107 GQVGAIGDEEEWVTLYEEEN 1126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,186,003
Number of Sequences: 539616
Number of extensions: 4146285
Number of successful extensions: 11040
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 10989
Number of HSP's gapped (non-prelim): 64
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)