RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2222
(264 letters)
>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family. The human FRG1 gene maps to
human chromosome 4q35 and has been identified as a
candidate for facioscapulohumeral muscular dystrophy.
Currently, the function of FRG1 is unknown.
Length = 189
Score = 228 bits (582), Expect = 8e-76
Identities = 98/193 (50%), Positives = 133/193 (68%), Gaps = 4/193 (2%)
Query: 70 RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTG 129
+++ ALDNGLF G H+ +GP P E+FTA+ V D K++FKSG+ KYL DK+G ++
Sbjct: 1 ASYLEALDNGLFTTGEPHDVGDGPDPREVFTAVKVGDEKISFKSGYGKYLGCDKDGILSA 60
Query: 130 RSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLH 189
RSDA+GP EQ+EPVF++ ALL +N CF+SV E D IVA S+ AG+ EMV++RS++
Sbjct: 61 RSDAIGPREQFEPVFQEGKPALLASNGCFLSVDEAGD-IVAKSKTAGEGEMVEIRSDA-- 117
Query: 190 LKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHET 249
+ D I E R K E YVKKFQK QDKK++L+ D + LK+A+A+G LHE
Sbjct: 118 SREFKTTDRIRMEAR-FKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARAEGNLHEE 176
Query: 250 MLDRRSKMKADRY 262
+LDRR KMK D+Y
Sbjct: 177 LLDRRVKMKHDKY 189
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include
actin-bundling/crosslinking proteins facsin,
histoactophilin and singed; identified in sea urchin,
Drosophila, Xenopus, rodents, and humans; The
fascin-like domain adopts a beta-trefoil topology and
contains an internal threefold repeat; the fascin
subgroup contains four copies of the domain;
Structurally similar to fibroblast growth factor (FGF).
Length = 119
Score = 46.9 bits (112), Expect = 7e-07
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID 122
+ + ++SA G + +++ +E FT N K A +S KYLS D
Sbjct: 4 VVLRSVNGRYLSAEAGG----DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSAD 59
Query: 123 KNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
+G V ++ F D AL N ++ ++ A+S G +E+
Sbjct: 60 SDGGVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGD-GSGTLKASSETVGPDEL 116
Score = 43.4 bits (103), Expect = 1e-05
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 72 FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRS 131
++SA +G L FT D K A ++ +YL D +G + S
Sbjct: 55 YLSADSDGGVQLEGHPNADCR------FTLEFHGDGKWALRAENGRYLGGDGSGTLKASS 108
Query: 132 DAVGPLEQWEP 142
+ VGP E +E
Sbjct: 109 ETVGPDELFEL 119
>gnl|CDD|203418 pfam06268, Fascin, Fascin domain. This family consists of several
eukaryotic fascin or singed proteins. The fascins are a
structurally unique and evolutionarily conserved group
of actin cross-linking proteins. Fascins function in the
organisation of two major forms of actin-based
structures: dynamic, cortical cell protrusions and
cytoplasmic microfilament bundles. The cortical
structures, which include filopodia, spikes,
lamellipodial ribs, oocyte microvilli and the dendrites
of dendritic cells, have roles in cell-matrix adhesion,
cell interactions and cell migration, whereas the
cytoplasmic actin bundles appear to participate in cell
architecture. Dictyostelium hisactophilin, another
actin-binding protein, is a submembranous pH sensor that
signals slight changes of the H+ concentration to actin
by inducing actin polymerisation and binding to
microfilaments only at pH values below seven. Members of
this family are histidine rich, typically contain the
repeated motif of HHXH.
Length = 108
Score = 32.3 bits (74), Expect = 0.072
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 84 GAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEP 142
G + + E SP+ F + + +YL NG + + VG E W
Sbjct: 52 GRVVSEAE-TSPDTRFE-LEFRGGWALLRDSNGRYLGGGPNGLLKANASTVGKDELWTL 108
Score = 28.4 bits (64), Expect = 1.4
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 97 EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQ 156
++FT + ND + +S KYLS D +GRV ++ P ++E F L +N
Sbjct: 25 QLFT-LEFNDGSYSLRSHDGKYLSADSDGRVVSEAET-SPDTRFELEFRGGWALLRDSNG 82
Query: 157 CFMSVSEQDDSIVATSRKAGKNEM 180
++ + + A + GK+E+
Sbjct: 83 RYLG-GGPNGLLKANASTVGKDEL 105
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 28.9 bits (65), Expect = 0.85
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 3 EYQAVKRGKLVLKGEKPAKKKKKNKSDTQA 32
EY V GKL LKG+K KKKK K +
Sbjct: 1 EYSNVVGGKLKLKGKKIDVKKKKKKKKKKN 30
>gnl|CDD|227495 COG5166, COG5166, Uncharacterized conserved protein [Function
unknown].
Length = 657
Score = 29.9 bits (67), Expect = 1.5
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 115 FDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSE 163
+ +L KNG+ T V E V ++ MS S+
Sbjct: 390 NEDFLRGKKNGKATRIMKGVSCSELSSIVSSTGSIVETNGIGEKMSFSK 438
>gnl|CDD|184521 PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional.
Length = 312
Score = 29.8 bits (67), Expect = 1.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 102 ILVNDSK--VAFKSGFDK-YLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCF 158
+ +DS V F S DK YL+ G T DA GP+ + PV D L A F
Sbjct: 46 LCTDDSTKLVPFLSAEDKEYLAWVSFGATTPTLDAEGPISEEAPVSPLDEKDLEAALPGF 105
Query: 159 MSVSEQ 164
+ ++EQ
Sbjct: 106 LGLTEQ 111
>gnl|CDD|239638 cd03583, NTR_complement_C3, NTR/C345C domain, complement C3
subfamily; The NTR domain found in complement C3 is also
known as the C345C domain because it occurs at the
C-terminus of complement C3, C4 and C5. Complement C3
plays a pivotal role in the activation of the complement
systems, as all pathways (classical, alternative, and
lectin) result in the processing of C3 by C3 convertase.
The larger fragment, activated C3b, contains the
NTR/C345C domain and binds covalently, via a reactive
thioester, to cell surface carbohydrates including
components of bacterial cell walls and immune
aggregates. The smaller cleavage product, C3a, acts
independently as a diffusible signal to mediate local
inflammatory processes. The structure of C3 shows that
the NTR/C345C domain is located in an exposed position
relative to the rest of the molecule. The function of
the domain in complement C3 is poorly understood.
Length = 149
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 195 KDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDN 233
K D + +ER +K + ++YV K K + ++ + D
Sbjct: 11 KGDKVTNDERIDKACEPGVDYVYK-VKLVNVELSDSYDI 48
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase.
Length = 410
Score = 28.2 bits (63), Expect = 4.9
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 23/91 (25%)
Query: 101 AILV--NDSKVAFKSGFDKYLSI-DKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQC 157
A+LV N+ ++A ++GFD I + NG++ ED + L
Sbjct: 69 AVLVSGNELRLALRAGFDPTRCIFNGNGKL----------------LED--LVLAAQEGV 110
Query: 158 FMSV-SEQD-DSIVATSRKAGKNEMVKLRSN 186
F++V SE D ++IV +R AGK V LR N
Sbjct: 111 FVNVDSEFDLENIVEAARIAGKKVNVLLRIN 141
>gnl|CDD|226912 COG4537, ComGC, Competence protein ComGC [Intracellular trafficking
and secretion].
Length = 107
Score = 27.0 bits (60), Expect = 5.3
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 160 SVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELN-YVKK 218
++++Q + I + G +VK+ + LD + P LSD++ + Y+K+
Sbjct: 36 NLTKQKEVI----QDKGCEAVVKMVESQAEAYELDHNRLPPS------LSDLKSDGYIKE 85
Query: 219 FQK--FQDKKIKLNSDNIAV 236
QK K IK+++ + V
Sbjct: 86 KQKSCPNGKYIKISNGEVKV 105
>gnl|CDD|173064 PRK14600, ruvA, Holliday junction DNA helicase RuvA; Provisional.
Length = 186
Score = 27.4 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 94 SPEEIFTAILVNDSKVAFKSG 114
+PE++F+AI VN+ K A K
Sbjct: 94 TPEQLFSAI-VNEDKAALKVN 113
>gnl|CDD|234811 PRK00685, PRK00685, metal-dependent hydrolase; Provisional.
Length = 228
Score = 27.1 bits (61), Expect = 8.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 43 DIENYAGWTQVK--HIKDIVGAISIEFGKRTFVSAL 76
++ NY V+ H +I G + + GK AL
Sbjct: 73 ELANYLSEKGVEKTHPMNIGGTVEFDGGKVKLTPAL 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.364
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,154,593
Number of extensions: 1258107
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 33
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)