RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2222
(264 letters)
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy,
FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR
{Mus musculus}
Length = 155
Score = 164 bits (417), Expect = 1e-51
Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 41 DPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIF 99
++ W V + +I G I+IE K ++ ALDNGLF LGA H E EGPSP E F
Sbjct: 5 SSGLDIVGIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQF 64
Query: 100 TAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFM 159
TA+ ++DS++A KSG+ KYL I+ +G V GRSDA+GP EQWEPVF+D MALL +N CF+
Sbjct: 65 TAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFI 124
Query: 160 SVSEQDDSIVATSRKAGKNEMVKLRSNS 187
+E I A ++ AG+ EM+K+RS +
Sbjct: 125 RCNE-AGDIEAKNKTAGEEEMIKIRSCA 151
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis,
CE migration, acetylation, actin-binding, cytoplasm,
phosphopr protein binding; HET: EPE; 1.80A {Homo
sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A*
Length = 493
Score = 65.9 bits (160), Expect = 2e-12
Identities = 22/137 (16%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 55 HIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFT-AILVNDSKVAFKS 113
++ + ++ VS + +++ + +E F I + K AF++
Sbjct: 255 ALEQSCAQVVLQAANERNVSTRQGM-----DLSANQDEETDQETFQLEIDRDTKKCAFRT 309
Query: 114 GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSR 173
KY ++ G V + + ++ + D + L +N F++ + + + A+
Sbjct: 310 HTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKK-NGQLAASVE 368
Query: 174 KAGKNEM--VKLRSNSL 188
AG +E+ +KL + +
Sbjct: 369 TAGDSELFLMKLINRPI 385
Score = 54.7 bits (131), Expect = 8e-09
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 61 GAISIEFGKR----TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND----SKVAFK 112
A+ I+FG +++A G ++ ++I+T D + V +
Sbjct: 8 EAVQIQFGLINCGNKYLTAEAFGF----KVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 63
Query: 113 SGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATS 172
S +YL+ DK+G VT + GP ++ V DD L + +D + +
Sbjct: 64 SHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFA 123
Query: 173 RKAGKNEMVKLRSNS 187
+ E +
Sbjct: 124 QTVSPAEKWSVHIAM 138
Score = 51.3 bits (122), Expect = 1e-07
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 84 GAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPV 143
G + + F I D ++ ++ K+++ KNG++ + G E +
Sbjct: 321 GGVQSTASSKNASCYFD-IEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMK 379
Query: 144 FEDDNMALLGANQCFMSVSEQDDSIVA 170
+ + + F+ + ++ A
Sbjct: 380 LINRPIIVFRGEHGFIGCRKVTGTLDA 406
Score = 40.5 bits (94), Expect = 4e-04
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
I++ FV++ NG E E+F L+N + F+
Sbjct: 343 RRITLRASNGKFVTSKKNGQLAASV-----ETAGDSELFLMKLINRPIIVFRGEHGFIGC 397
Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
G + + + ++ F D + + + +V DS V +S +
Sbjct: 398 RKVTGTLDANRSSY---DVFQLEFNDGAYNIKDSTGKYWTVG--SDSAVTSSGDTPVDFF 452
Query: 181 VKLRSNSL 188
+ +
Sbjct: 453 FEFCDYNK 460
Score = 38.9 bits (90), Expect = 0.001
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 9 RGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFG 68
R +V +GE + +D + +Y + + GA +I+
Sbjct: 383 RPIIVFRGEH----------GFIGCRKVTGTLDANRSSYDVFQLEFND----GAYNIKDS 428
Query: 69 KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVT 128
+ + + G +P + F + +KVA K G +YL D G +
Sbjct: 429 TGKYWTVGSDSAVT-------SSGDTPVD-FFFEFCDYNKVAIKVG-GRYLKGDHAGVLK 479
Query: 129 GRSDAVGPLEQWE 141
++ V P WE
Sbjct: 480 ASAETVDPASLWE 492
Score = 37.0 bits (85), Expect = 0.004
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 32 AHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKE 91
+ W+ HI ++ + I D++
Sbjct: 114 GTEDRLSCFAQTVSPAEKWSV--HIAMHPQVNIYSVTRKRYAHLSARPA---DEIAVDRD 168
Query: 92 GPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMAL 151
P + + D + + ++ ++L +GR+ R + P + F +A
Sbjct: 169 VPWGVDSLITLAFQDQRYSVQTADHRFLR--HDGRLVARPE---PATGYTLEFRSGKVAF 223
Query: 152 LGANQCFMSVSEQDDSIVATSR-KAGKNEM 180
+++ S ++ A K GK+E+
Sbjct: 224 RDCEGRYLAPSGPSGTLKAGKATKVGKDEL 253
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 4e-07
Identities = 50/333 (15%), Positives = 103/333 (30%), Gaps = 111/333 (33%)
Query: 10 GKLVLKGEKPAKKKKKNKSDTQAH----GSNSK-------------QVDPDIENYAGWTQ 52
GK + + K + K D + + + Q+DP+ + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DH 219
Query: 53 VKHIKDIVGAISIEFGKRTFVSA-LDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAF 111
+IK + +I E +R S +N L +L + V ++K
Sbjct: 220 SSNIKLRIHSIQAEL-RRLLKSKPYENCLLVL----LN--------------VQNAKAW- 259
Query: 112 KSGFD---KYLSIDKNGRVTGRSDAVG-------PLEQWEPVF-EDDNMALLGANQCFMS 160
+ F+ K L + +VT D + L+ D+ +LL ++
Sbjct: 260 -NAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLL-LK--YLD 312
Query: 161 VSEQDD------------SIVATS-----------RKAGKNEMVKLRSNSLHLKNLD--- 194
QD SI+A S + +++ + +SL L+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAE 370
Query: 195 ------------KDDDIPEE--ER--TNKLSDIELNYVKKFQKF----QDKK---IKLNS 231
IP + + + V K K+ + K I + S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 232 DNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
+ + + + + LH +++D + K +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKT--FDS 461
Score = 35.6 bits (81), Expect = 0.015
Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 60/254 (23%)
Query: 37 SKQVD-----PDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALD-NGLFILGAIHEDK 90
+++D D + + + + E ++ L N F++ I ++
Sbjct: 48 KEEIDHIIMSKDAVS-----GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 91 EGPS-PEEIFTA---ILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQW----EP 142
PS ++ L ND++V F KY V+ R L Q P
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQV-----FAKY-------NVS-RLQPYLKLRQALLELRP 149
Query: 143 VFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNS----LHLKNLDKDDD 198
N+ + G + + + V+ + + L+LKN + +
Sbjct: 150 ---AKNVLIDGVLGSGKTW------VAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 199 IPEEERTNKL-SDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETML----DR 253
+ E KL I+ N+ + IKL +I + +E L +
Sbjct: 198 VL--EMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 254 RSK--MKA-DRYCK 264
++ A + CK
Sbjct: 254 QNAKAWNAFNLSCK 267
>3q7x_A De novo designed beta-trefoil architecture with S primary
structure; beta-terfoil, de novo protein; 1.40A
{Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A
3o4a_A* 3o49_A
Length = 132
Score = 46.9 bits (111), Expect = 5e-07
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 84 GAIHEDKEGPSPEEIFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEP 142
G + ++ P F + +V +S ++L I+ +G V G D P Q++
Sbjct: 67 GTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQI 126
Query: 143 VFEDD 147
E +
Sbjct: 127 SPEGN 131
Score = 43.9 bits (103), Expect = 5e-06
Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 72 FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGR 130
F+ +G + ++ P F + +V +S ++L I+ +G V G
Sbjct: 18 FLRINPDG-----TVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGT 72
Query: 131 SDAVGPLEQWEPVFEDDNMALL--GANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNS 187
D P Q++ E + LL F+ ++ D ++ T ++ ++
Sbjct: 73 RDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINP-DGTVDGTRDRSDPGIQFQISPEG 130
Score = 34.6 bits (79), Expect = 0.009
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 105 NDSKVAFKSGFD-KYLSIDKNGRVTGRSDAVGPLEQWEPVFEDD-NMALLGANQCFMSVS 162
+ +V +S ++L I+ +G V G D P Q++ E + + L
Sbjct: 4 HHHEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRI 63
Query: 163 EQDDSIVATSRKAGKNEMVKLRSNS 187
D ++ T ++ ++
Sbjct: 64 NPDGTVDGTRDRSDPGIQFQISPEG 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-05
Identities = 50/260 (19%), Positives = 81/260 (31%), Gaps = 110/260 (42%)
Query: 45 ENYAGWTQVKHIKDIV----GAISIEF----GKR--------TFVSALDNGLF---ILGA 85
+ Y G++ I DIV ++I F GKR F + +D L I
Sbjct: 1655 DTY-GFS----ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 86 IHEDK-----EGPSPEEI----FT--AILVNDSKVAF---KS-GFDKYLSIDKNGRVTGR 130
I+E + FT A+ + K AF KS G I + G
Sbjct: 1710 INEHSTSYTFRSEK-GLLSATQFTQPALTLM-EKAAFEDLKSKGL-----IPADATFAGH 1762
Query: 131 S-----------------DAV------GPLEQWE-PVFED--DNMALLGANQCFMSVSEQ 164
S V G Q P E N ++ N ++ S
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 165 DDSIVATSRKAGKN-----EMVKLRSN----------SLHLKNLDKDDDIPEEERTNKLS 209
+++ + GK E+V N + L+ LD ++
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV----NYNVENQQYVAAGDLRALD------------TVT 1866
Query: 210 DIELNYVKKFQKFQDKKIKL 229
++ LN++K +KI +
Sbjct: 1867 NV-LNFIKL------QKIDI 1879
Score = 40.8 bits (95), Expect = 4e-04
Identities = 39/187 (20%), Positives = 58/187 (31%), Gaps = 70/187 (37%)
Query: 31 QAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGK--RTFVSALDNG---LFILG- 84
+ G ++ G T H + +V A++I +F ++ LF +G
Sbjct: 254 KLLGFTPGEL---RSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 85 -------------AIHEDK----EG-PSP---------EEIFTAI-LVNDSKVAFKSGFD 116
+I ED EG PSP E++ + N A
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-----G 363
Query: 117 KYLSID-KNGR----VTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSV---SEQDDS- 167
K + I NG V+ GP P +L G N S D S
Sbjct: 364 KQVEISLVNGAKNLVVS------GP-----P------QSLYGLNLTLRKAKAPSGLDQSR 406
Query: 168 IVATSRK 174
I + RK
Sbjct: 407 IPFSERK 413
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP:
b.42.5.2 PDB: 1hce_A
Length = 118
Score = 42.0 bits (98), Expect = 2e-05
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 60 VGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
+G + + F+SA + H F + + KVA K+ KYL
Sbjct: 1 MGNRAFKSHHGHFLSAEGEAV----KTHHGH--HDHHTHFH-VENHGGKVALKTHCGKYL 53
Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAG 176
SI + +V G + +++ G + ++S + +
Sbjct: 54 SIGDHKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISA-DHHGHVSTKEHHDH 109
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 55 HIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSG 114
H+++ G ++++ ++S D+ L +F KV+ K
Sbjct: 35 HVENHGGKVALKTHCGKYLSIGDHKQVYL-----SHHLHGDHSLFHLEHHGG-KVSIKGH 88
Query: 115 FDKYLSIDKNGRVTGRSDAVGPLEQWE 141
Y+S D +G V+ + +E
Sbjct: 89 HHHYISADHHGHVSTKEHHDHD-TTFE 114
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo
protein; 2.20A {Homo sapiens}
Length = 143
Score = 40.0 bits (93), Expect = 2e-04
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 39 QVDPD------IENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEG 92
+++PD + Q + + G + ++ + ++ G + ++
Sbjct: 23 RINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPD----GTVDGTRDR 78
Query: 93 PSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN 148
F + +V KS +YL I+ +G V G D Q++ E +
Sbjct: 79 SDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNG 135
Score = 31.9 bits (72), Expect = 0.10
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 84 GAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP 142
G + ++ F + +V KS +YL I+ +G V G D Q++
Sbjct: 28 GTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQI 87
Query: 143 VFEDDNMALL 152
E + LL
Sbjct: 88 SPEGNGEVLL 97
Score = 25.7 bits (56), Expect = 9.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 117 KYLSIDKNGRVTGRSDAVGPLEQWE 141
+YL I+ +G V G D Q++
Sbjct: 20 QYLRINPDGTVDGTRDRSDTHIQFQ 44
>3p6i_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; HET: SO4; 1.32A {Synthetic}
PDB: 3ogf_A
Length = 142
Score = 35.8 bits (82), Expect = 0.005
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 16/135 (11%)
Query: 19 PAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDN 78
P KK + + + I V S E G+ ++ +
Sbjct: 10 PPGNYKKGGTVDGTRDRSDTHIQFQIS--------PEGNGEVLLKSTETGQ--YLRINPD 59
Query: 79 GLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPL 137
G + ++ F + +V KS +YL I+ +G V G D
Sbjct: 60 G-----TVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTH 114
Query: 138 EQWEPVFEDDNMALL 152
Q++ E + LL
Sbjct: 115 IQFQISPEGNGEVLL 129
>3p6j_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; 1.35A {Synthetic}
Length = 142
Score = 35.1 bits (80), Expect = 0.008
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 39 QVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFI----LGAIHEDKEGPS 94
+++PD G G+ S + G ++ G + ++
Sbjct: 45 RINPDGTVD-GTRDRSDTHIQFQISPEGNGEVLLKST-ETGQYLRINPDGTVDGTRDRSD 102
Query: 95 PEEIFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGRSD 132
F + +V KS +YL I+ +G V G D
Sbjct: 103 THIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRD 141
Score = 32.4 bits (73), Expect = 0.061
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 84 GAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP 142
G + ++ F + +V KS +YL I+ +G V G D Q++
Sbjct: 50 GTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQI 109
Query: 143 VFEDDN 148
E +
Sbjct: 110 SPEGNG 115
Score = 28.1 bits (62), Expect = 1.6
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 117 KYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCFMSVSEQDDSIVATSRKA 175
+YL I+ +G V G D Q++ E + + L D ++ T ++
Sbjct: 42 QYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRS 101
Query: 176 GKNEMVKLR 184
+ ++
Sbjct: 102 DTHIQFQIS 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.51
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 177 KNEMVKLRSNSLHLKNLDKDDDIP 200
K + KL+++ LK L DD P
Sbjct: 19 KQALKKLQAS---LK-LYADDSAP 38
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold,
polymorphism, secreted, hormone; 2.50A {Homo sapiens}
Length = 211
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
++GF +L I +G V G E + +++ G +
Sbjct: 72 RTGF--HLQILPDGSVQGTRQDHSLFGILEFISVAVGLVSIRGVDSGL 117
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines,
structural GE PSI-2, protein structure initiative; HET:
MLY MSE PLM; 2.41A {Corynebacterium glutamicum}
Length = 277
Score = 27.7 bits (61), Expect = 3.5
Identities = 11/78 (14%), Positives = 25/78 (32%)
Query: 71 TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGR 130
T + G + A +G S +E + + + + I +GR++
Sbjct: 99 TSSLGMAVGAAAMAAARMAXDGASLQECYDIAVDTLXRSETWIYLHRIDEIWXSGRISTA 158
Query: 131 SDAVGPLEQWEPVFEDDN 148
+ V P+ +
Sbjct: 159 TAMVSTALATRPIMRFNG 176
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth
factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1
PDB: 1qqk_A
Length = 140
Score = 27.3 bits (60), Expect = 3.6
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
++ + YL IDK G+V G + E +A+ G +
Sbjct: 18 RTQW--YLRIDKRGKVKGTQEMRNSYNIMEIRTVAVGIVAIKGVESEY 63
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like
domain, hormone/growth factor/membrane protein complex;
HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Length = 145
Score = 27.3 bits (60), Expect = 3.6
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
+ + +L I+KNG+V+G P E + +A+ N +
Sbjct: 22 FTKY--FLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNY 67
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor
complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB:
1g82_A*
Length = 174
Score = 27.4 bits (60), Expect = 4.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
++GF +L I NG + G E + +++ G +
Sbjct: 35 RTGF--HLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGL 80
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance,
hydroperoxide reductase; 1.80A {Escherichia coli} SCOP:
d.227.1.1
Length = 143
Score = 26.6 bits (58), Expect = 5.4
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 70 RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAIL 103
T L+ + E ++G +PEE+ A
Sbjct: 23 STESGVLNQQPYGFNTRFEGEKGTNPEELIGAAH 56
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A
{Artificial gene} PDB: 1y69_8
Length = 123
Score = 26.4 bits (59), Expect = 6.4
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
L KD +I + + L D+ QK D IK + EA
Sbjct: 76 KAAALGKDKEINWFDISQSLWDV--------QKLTDAAIK-KIEAALADMEA 118
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human,
hormone/growth factor complex; 1.70A {Homo sapiens}
SCOP: b.42.1.1
Length = 144
Score = 26.2 bits (57), Expect = 7.2
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
+ G+ +L + +G + G D + + +A+ G
Sbjct: 18 QQGY--FLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASL 63
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Length = 185
Score = 26.4 bits (59), Expect = 7.3
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
LK L KD +I E+E +I QK D +K D + KE
Sbjct: 138 DLKALLKDKEISEDEDRKAQEEI--------QKLTDVAVK-KIDEVLAAKEK 180
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth
factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB:
1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A
3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A
3fjj_A 1jy0_A 3bao_A 3fjf_A ...
Length = 146
Score = 26.2 bits (57), Expect = 7.3
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 117 KYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCF 158
+L I +G V G D Q + E + +
Sbjct: 27 HFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQ 69
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Length = 185
Score = 26.4 bits (59), Expect = 7.5
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
+K L KD +I E++ D+ QK D IK + KEA
Sbjct: 138 KVKALLKDKEISEDDDRRSQDDV--------QKLTDAAIK-KIEAALADKEA 180
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta
sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1
PDB: 1t1m_C
Length = 185
Score = 26.4 bits (59), Expect = 7.6
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
+K K+ IPE++ ++I QK D+ I+ D + +K+
Sbjct: 138 KIKEDQKEGLIPEDDAKRLENEI--------QKLTDEFIE-KLDEVFEIKKE 180
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 26.4 bits (59), Expect = 7.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
LK L K+ + E+E ++I QK D+ I +D +A KE
Sbjct: 139 KLKKLAKELHLSEDETKRAEAEI--------QKITDEFIA-KADQLAEKKEQ 181
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.65A
{Bacillus anthracis}
Length = 209
Score = 26.4 bits (59), Expect = 8.0
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
LK L+K +I E++ DI QK DK I D IA KE
Sbjct: 162 DLKKLEKAGEITEDDLRGYTEDI--------QKETDKYIA-KVDEIAKNKEK 204
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A
{Artificial gene}
Length = 121
Score = 25.6 bits (57), Expect = 8.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
L L KD ++ + + L +I QK D +K D + KE
Sbjct: 66 DLAALGKDKEVNWFDISQALWEI--------QKLTDVAVK-KIDEVLAAKEK 108
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle,
protein synthesis, translation; 2.15A {Mycobacterium
tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Length = 185
Score = 26.4 bits (59), Expect = 8.6
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
L + K+ + E+E D+ K + + D + KE
Sbjct: 138 ELHRIRKEGEAGEDEVGRAEKDL--------DKTTHQYVT-QIDELVKHKEG 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.364
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,868,919
Number of extensions: 229708
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 50
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)