RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2222
(264 letters)
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 123
Score = 78.0 bits (192), Expect = 6e-19
Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKSGFDKYLSI 121
+ ++ VS G + +++ + +E F + D+ K AF++ KY ++
Sbjct: 4 VVLQAANERNVST-RQG----MDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTL 58
Query: 122 DKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV 181
G V + + ++ + D + L +N F++ + + + A+ AG +E+
Sbjct: 59 TATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKK-NGQLAASVETAGDSELF 117
Query: 182 KLR 184
++
Sbjct: 118 LMK 120
Score = 44.5 bits (105), Expect = 1e-06
Identities = 9/89 (10%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN--MALLGANQCFMSVSEQD 165
+V ++ ++ +S + ++ D E ++ + D A + ++
Sbjct: 3 QVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTL-TAT 61
Query: 166 DSIVATSRKAGKNEM--VKLRSNSLHLKN 192
+ +T+ + ++ R + L+
Sbjct: 62 GGVQSTASSKNASCYFDIEWRDRRITLRA 90
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 72.3 bits (177), Expect = 1e-16
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 14/132 (10%)
Query: 62 AISIEFGKR----TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND----SKVAFKS 113
A+ I+FG +++A G ++ ++I+T D + V +S
Sbjct: 2 AVQIQFGLINCGNKYLTAEAFG----FKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRS 57
Query: 114 GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCFMSVSEQDDSIVATS 172
+YL+ DK+G VT + GP ++ V DD +L +D + +
Sbjct: 58 HLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRY-FGGTEDRLSCFA 116
Query: 173 RKAGKNEMVKLR 184
+ E +
Sbjct: 117 QTVSPAEKWSVH 128
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
(hisactophilin) {Dictyostelium discoideum [TaxId:
44689]}
Length = 118
Score = 64.1 bits (156), Expect = 8e-14
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 60 VGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
+G + + F+SA + F + KVA K+ KYL
Sbjct: 1 MGNRAFKSHHGHFLSAEGEA------VKTHHGHHDHHTHFHVEN-HGGKVALKTHCGKYL 53
Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKA 175
SI + +V G + +++ G + ++S + +
Sbjct: 54 SIGDHKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISA-DHHGHVSTKEHHD 108
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 44.4 bits (105), Expect = 8e-07
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
GA +I+ + + + G +P + F + +KVA K G +YL
Sbjct: 39 GAYNIKDSTGKYWTVGSDSAVT-------SSGDTPVD-FFFEFCDYNKVAIKVG-GRYLK 89
Query: 121 IDKNGRVTGRSDAVGPLEQWE 141
D G + ++ V P WE
Sbjct: 90 GDHAGVLKASAETVDPASLWE 110
Score = 39.4 bits (92), Expect = 5e-05
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 97 EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQ 156
++F + ND K KY ++ + VT D + F D N +
Sbjct: 30 DVFQ-LEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTP---VDFFFEFCDYNKVAIKVGG 85
Query: 157 CFMSVSEQDDSIVATSRKAGKNE 179
++ + + A++
Sbjct: 86 RYLKG-DHAGVLKASAETVDPAS 107
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 68
Score = 27.0 bits (60), Expect = 0.53
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 229 LNSDNIAVLKEAKAQGYLHETMLDRRSKMKADR 261
L SD +L+ GY ++L +A R
Sbjct: 1 LTSDQTKILEICSILGYSSISLLKANLGWEAVR 33
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 26.7 bits (59), Expect = 1.6
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 117 KYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN--MALLGANQCFMSVSEQDDSIVATSRK 174
K++ + N R+ ++ P + + + + GA + ++A S
Sbjct: 30 KHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNG 89
Query: 175 AGKNEMVK 182
GK+ +
Sbjct: 90 KGKDCVFT 97
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC
{Escherichia coli [TaxId: 562]}
Length = 142
Score = 26.6 bits (58), Expect = 1.9
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 74 SALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFK 112
L+ + E ++G +PEE+ A +A
Sbjct: 26 GVLNQQPYGFNTRFEGEKGTNPEELIGAAHAACFSMALS 64
>d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal
disease virus [TaxId: 10995]}
Length = 419
Score = 26.3 bits (58), Expect = 4.2
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 132 DAVGPLEQW-EPVFEDD-NMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLH 189
DA+ L E VF + L A + D + V T A N +
Sbjct: 225 DAITSLSIGGELVFHTSVHGLALDATIYLIGF---DGTTVITRAVASDN------GLTTG 275
Query: 190 LKNLDKDD-DIPEEERTNKLSDIELNYV 216
+ NL + IP E T ++ I+L V
Sbjct: 276 IDNLMPFNLVIPTNEITQPITSIKLEIV 303
>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 287
Score = 25.3 bits (55), Expect = 7.5
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 75 ALDNGLFILGAIHEDKEGPSPEEIFTAI--LVNDSKVAFKSGFDKYLSIDKNGRVTGRSD 132
+L GL ++ A+ K+ + I + F YL+ + GR++ +
Sbjct: 123 SLGQGLAVMKAVELAKQNTPYNLLCETIESYCRHMEHIFTVDNLDYLA--RGGRISKTAA 180
Query: 133 AVGPL 137
A G L
Sbjct: 181 AFGGL 185
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 25.6 bits (56), Expect = 7.6
Identities = 8/64 (12%), Positives = 23/64 (35%)
Query: 189 HLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHE 248
+ ++ D +PE + L + +K+ D+ L+ K + ++
Sbjct: 53 SVDVVEDWDTLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTINY 112
Query: 249 TMLD 252
++
Sbjct: 113 CDVN 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.364
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,005
Number of extensions: 42746
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 27
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)