BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2224
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To
Methylated Single Stranded Rna
Length = 150
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Query: 151 RKETVLD----AWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTF 206
R ETVLD ++Q K+ + ++ IVLTKYNNKTYRVDDI +D P STF
Sbjct: 1 RSETVLDFMFNLYQQTEEHKF--QEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTF 58
Query: 207 P-MKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEIIYLVPELCYLTGL 264
G VS+++YY+K+YN+ I + QP++V + K R G L+PELCYLTGL
Sbjct: 59 KKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGL 118
Query: 265 SDDMRADFRLMKPLGEITRVRPRER 289
+D MR DF +MK L TR+ P +R
Sbjct: 119 TDKMRNDFNVMKDLAVHTRLTPEQR 143
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain
pdb|2L5D|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain With
Ssrna (5'- Pugaca)
Length = 134
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 87/140 (62%), Gaps = 16/140 (11%)
Query: 142 CVELSHKVLRKETVLDAWEQCRNDKYFYYR----KFEAQMTNS----IVLTKYNNKTYRV 193
C ++SHKVLR ETVLD FY++ KF+ Q++ +VLTKYNNKTYRV
Sbjct: 1 CTDVSHKVLRSETVLDFMFN------FYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRV 54
Query: 194 DDIQYDVTPCSTF-PMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEI 251
DDI +D P STF G VS+++YY+K+YN+ I + QP++V + K R G
Sbjct: 55 DDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGP 114
Query: 252 IYLVPELCYLTGLSDDMRAD 271
L+PELCYLTGL+D MR D
Sbjct: 115 AMLIPELCYLTGLTDKMRND 134
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|B Chain B, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|C Chain C, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|D Chain D, Crystal Structure Of Piwil2 Paz Domain
Length = 148
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 88/144 (61%), Gaps = 6/144 (4%)
Query: 151 RKETVLDAWEQC-RNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMK 209
R + VLD + +K + + + +IV+T+YNN+TYR+DD+ ++ TP +F M
Sbjct: 1 RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMS 60
Query: 210 -GENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAG---QSEIIYLVPELCYLTGLS 265
G+ +++++YY K Y T++ +QP+++H+ R+ G + EI+ L+PEL ++TG+
Sbjct: 61 DGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGEIL-LLPELSFMTGIP 119
Query: 266 DDMRADFRLMKPLGEITRVRPRER 289
+ M+ DFR MK L + + P++
Sbjct: 120 EKMKKDFRAMKDLAQQINLSPKQH 143
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 10/114 (8%)
Query: 168 FYYR----KFEAQMTNS----IVLTKYNNKTYRVDDIQYDVTPCSTF-PMKGENVSYIDY 218
FY++ KF+ Q++ +VLTKYNNKTYRVDDI +D P STF G VS+++Y
Sbjct: 11 FYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEY 70
Query: 219 YQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEIIYLVPELCYLTGLSDDMRAD 271
Y+K+YN+ I + QP++V + K R G L+PELCYLTGL+D MR D
Sbjct: 71 YRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAXLIPELCYLTGLTDKMRND 124
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Oh At Its 3'-End
Length = 124
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 10/114 (8%)
Query: 168 FYYR----KFEAQMTNS----IVLTKYNNKTYRVDDIQYDVTPCSTF-PMKGENVSYIDY 218
FY++ KF+ Q++ +VLTKYNNKTYRVDDI +D P STF G VS+++Y
Sbjct: 11 FYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEY 70
Query: 219 YQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEIIYLVPELCYLTGLSDDMRAD 271
Y+K+YN+ I + QP++V + K R G L+PELCYLTGL+D MR D
Sbjct: 71 YRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND 124
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain
(Residues 277-399) In Complex With 14-Mer Rna (12-Bp +
2-Nt Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 10/114 (8%)
Query: 168 FYYR----KFEAQMTNS----IVLTKYNNKTYRVDDIQYDVTPCSTF-PMKGENVSYIDY 218
FY++ KF+ Q++ +VLTKYNNKTYRVDDI +D P STF G VS+++Y
Sbjct: 11 FYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEY 70
Query: 219 YQKKYNETIRNRNQPMIVHKSKLRELRAGQ-SEIIYLVPELCYLTGLSDDMRAD 271
Y+K+YN+ I + QP +V + K R G L+PELCYLTGL+D MR D
Sbjct: 71 YRKQYNQEITDLKQPXLVSQPKRRRGPGGTLPGPAXLIPELCYLTGLTDKMRND 124
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|B Chain B, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|C Chain C, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|D Chain D, Crystal Structure Of Human Hili Paz Domain
Length = 140
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 76/114 (66%), Gaps = 5/114 (4%)
Query: 177 MTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMK-GENVSYIDYYQKKYNETIRNRNQPMI 235
+ +IV+T+YNN+TYR+DD+ ++ TP +F M G+ +++++YY K Y T++ +QP++
Sbjct: 28 LVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLL 87
Query: 236 VHKSKLRELRAG---QSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRP 286
+H+ R+ G + EI+ L+PEL ++TG+ + M+ DFR MK L + + P
Sbjct: 88 IHRPSERQDNHGMLLKGEIL-LLPELSFMTGIPEKMKKDFRAMKDLAQQINLSP 140
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 388 KAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGL----- 442
K A + F V+ + +K L++KG L V +++ K GG ++ P+ L
Sbjct: 98 KRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKT 157
Query: 443 MVLGFDVTHDSDLKGS-------SYGALVASIDPQMSSWFSRVSPHRSGNE 486
MV+G+DVTH ++L S LV++ID + W + V + G E
Sbjct: 158 MVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQE 208
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 388 KAAQGMRFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGL----- 442
K A + F V+ + +K L++KG L V +++ K GG ++ P+ L
Sbjct: 98 KRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKT 157
Query: 443 MVLGFDVTHDSDLKGS-------SYGALVASIDPQMSSWFSRV--SPH 481
MV+G+DVTH ++L S LV++ID + W + V +PH
Sbjct: 158 MVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPH 205
>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 394 RFKVNRPNVIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDS 453
R ++ RP + V A+ GA + +VA+Q K+ A + P+ VLG D+ H
Sbjct: 16 RHQILRPGLRVLDCGAAPGAWS---QVAVQ---KVNAAGTDPSSPVG--FVLGVDLLHIF 67
Query: 454 DLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIA 492
L+G+++ DP+ S V P R + + +D+A
Sbjct: 68 PLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMA 106
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 164 NDKYFYYRKFEAQMTNSIVLT-KYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKK 222
+D+Y Y A + +V T + + Y V I T S F E+++Y+ YY
Sbjct: 143 SDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATA 202
Query: 223 YNETIRNRNQPMIV 236
+N +R + P++
Sbjct: 203 HNIHLRAADLPLVA 216
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 24 RGLLRDHKDKIGAYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEYG-DA 82
R LL +DK ++V +G +F P ++ + M+ E+ +V+ +E DA
Sbjct: 258 RNLLSMSQDKYASHVIEGAFLFAPPALLHEMME-----------EIFSGYVKDVESNRDA 306
Query: 83 QYTQLF----NILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQ 134
LF N +++Q + L+G+ + ++P L ++ GW M+Q
Sbjct: 307 LDILLFHQYGNYVVQQMISICTAALIGKE------ERELPPAILLLYSGWYEKMKQ 356
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 38 VFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLE 78
+F + F PN + +++ L+SK +D+ VE+T ++ + +
Sbjct: 361 LFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIAD 401
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 38 VFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLE 78
+F + F PN + +++ L+SK +D+ VE+T ++ + +
Sbjct: 361 LFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIAD 401
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 302 NSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDAN-WTTPTRSSVFR 360
NSE E + ++ A+ N + G +L PD + ++ PLKPF DA + T R
Sbjct: 171 NSEWMETVDQYAKAVTVNGEK--GVVLRPDQMKWTAPLKPFSHPVDAVIYETHLRDFSIH 228
Query: 361 APNLERWCVLTTGFMMADTENFLQLINKAAQGMRF 395
E ++ G +A TE Q N ++ G+ +
Sbjct: 229 ----ENSGMINKGKYLALTETDTQTANGSSSGLAY 259
>pdb|2J6A|A Chain A, Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc Finger
Protein From The Erf1 Methyltransferase Complex
Length = 141
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 126 PGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRK 172
P + +S++++ +D M + H +L + ++ + +CRN + YY K
Sbjct: 76 PSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYYIK 122
>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate- Binding Lysine Residue
Length = 401
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 11 IDFNPPEDIMGVKRGLLRDHKDK-----IGAYVFDGTMMFTPNTIIGKEMKLMSKKRDE 64
++ PP+ I+GV RD K +GAY D + N + E + +KK D+
Sbjct: 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDK 65
>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|7AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|A Chain A, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|B Chain B, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|1TAR|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAR|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1AMA|A Chain A, Domain Closure In Mitochondrial Aspartate
Aminotransferase
pdb|1MAP|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1MAQ|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1OXP|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Closed
Conformation
Length = 401
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 11 IDFNPPEDIMGVKRGLLRDHKDK-----IGAYVFDGTMMFTPNTIIGKEMKLMSKKRDE 64
++ PP+ I+GV RD K +GAY D + N + E + +KK D+
Sbjct: 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDK 65
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 442 LMVLGFDVTH--DSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSV 495
++ LG DVTH D K S A+V S+D + + + V + E+ D+A V
Sbjct: 591 VIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMV 646
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 442 LMVLGFDVTH--DSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSV 495
++ LG DVTH D K S A+V S+D + + + V + E+ D+A V
Sbjct: 593 VIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMV 648
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,242,806
Number of Sequences: 62578
Number of extensions: 637038
Number of successful extensions: 1319
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 21
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)