Query psy2224
Match_columns 504
No_of_seqs 171 out of 1048
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1042|consensus 100.0 2E-104 4E-109 793.1 39.4 503 1-504 107-668 (845)
2 PLN03202 protein argonaute; Pr 100.0 3.5E-87 7.5E-92 739.6 45.5 488 2-504 60-703 (900)
3 KOG1041|consensus 100.0 1.6E-69 3.5E-74 593.7 40.6 482 2-504 72-672 (876)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.3E-40 2.8E-45 347.4 25.8 229 274-504 2-292 (448)
5 cd04657 Piwi_ago-like Piwi_ago 100.0 1.3E-37 2.7E-42 321.9 19.4 195 307-504 1-264 (426)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.4E-28 3.1E-33 252.3 17.0 170 319-504 1-236 (393)
7 cd02845 PAZ_piwi_like PAZ doma 99.9 2.2E-25 4.9E-30 187.2 10.6 113 153-265 2-117 (117)
8 PF02170 PAZ: PAZ domain; Int 99.9 6.4E-22 1.4E-26 172.6 9.5 113 153-271 1-120 (135)
9 cd02825 PAZ PAZ domain, named 99.8 5.4E-20 1.2E-24 155.3 9.3 104 153-262 2-115 (115)
10 cd02846 PAZ_argonaute_like PAZ 99.8 6.8E-20 1.5E-24 155.0 9.9 102 153-262 2-114 (114)
11 PF02171 Piwi: Piwi domain; I 99.8 2.3E-18 5E-23 171.4 14.0 91 413-503 43-140 (302)
12 cd02844 PAZ_CAF_like PAZ domai 99.7 3.2E-17 6.9E-22 140.7 7.4 89 173-262 27-132 (135)
13 PF08699 DUF1785: Domain of un 99.4 9.2E-14 2E-18 98.4 3.4 50 102-152 1-51 (52)
14 cd02843 PAZ_dicer_like PAZ dom 99.4 1.3E-12 2.8E-17 107.9 6.4 66 174-240 38-107 (122)
15 cd04659 Piwi_piwi-like_ProArk 99.3 1.2E-11 2.5E-16 128.1 13.4 118 380-504 129-253 (404)
16 COG1431 Argonaute homolog, imp 91.5 2.8 6E-05 44.2 12.1 73 403-476 431-510 (685)
17 PF02427 PSI_PsaE: Photosystem 35.9 42 0.0009 24.2 2.7 22 461-482 20-41 (61)
18 PF08459 UvrC_HhH_N: UvrC Heli 35.0 1.8E+02 0.0038 25.8 7.1 64 437-502 7-72 (155)
19 PRK02749 photosystem I reactio 29.0 61 0.0013 24.1 2.6 22 461-482 22-43 (71)
20 CHL00125 psaE photosystem I su 28.8 57 0.0012 23.7 2.4 22 461-482 21-42 (64)
21 cd06559 Endonuclease_V Endonuc 26.0 3.3E+02 0.0072 25.3 7.8 63 439-502 23-90 (208)
22 PHA00687 hypothetical protein 21.1 53 0.0011 22.1 1.0 40 251-301 8-47 (56)
No 1
>KOG1042|consensus
Probab=100.00 E-value=1.7e-104 Score=793.15 Aligned_cols=503 Identities=39% Similarity=0.790 Sum_probs=480.0
Q ss_pred CCCcceEEEEEEecCCCCChhHHHHHHHHhhhccc-ceEeeceeeecccccCCceeEEeeecCCCceEEEEEEEEEeecc
Q psy2224 1 MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLEY 79 (504)
Q Consensus 1 ~p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~~~~~-~~~~Dg~~lys~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~~~~ 79 (504)
+|+|.||||+|+|+|.++++++|.++|.+|.++.| .++|||..||.+++++.+..+++++++++..++++|++++++..
T Consensus 107 ~p~w~iyqYhVef~P~ves~rlR~~~L~~h~~lig~~~~FDG~iLfl~~k~eq~~tel~~ks~~ge~i~I~ik~~~~~~~ 186 (845)
T KOG1042|consen 107 RPDWSIYQYHVEFEPDVESRRLREALLYNHTDLIGKGYAFDGTILFLKEKFEQKQTELVSKSRDGELIKITIKLTNELPS 186 (845)
T ss_pred CCCcEEEEEEEeeccccccHHHHHHHHHHhHhhhccceeecceeehhhHHHhhhhheeecccCCCceEEEEEEEeccccC
Confidence 58999999999999999999999999999999999 99999999999999999988999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhhhhcCceeccccccCCCCCCcCCCCceeEecceeeEEeccCCeeEEEEeccccccchhhHHHHH
Q psy2224 80 GDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAW 159 (504)
Q Consensus 80 ~~~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~~~~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~~~ll~~i 159 (504)
++++++|++|+|+|+.+..+++.++||+||+|.++.+++++.+++|+||.+|||..|..++|+.|++||+.++++++|+|
T Consensus 187 t~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR~ETvy~~m 266 (845)
T KOG1042|consen 187 TDPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMRTETVYDIM 266 (845)
T ss_pred CChhHHHHHHHHHHHHHhhccHHHhhhccCCCCcccccccccceecCcchhHHHHhhhceeeehhhhhhHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCCccccHHHHHHHhcCccccCCCCceEEeec
Q psy2224 160 EQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKS 239 (504)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~L~~p~~Plv~~~~ 239 (504)
.++.++++++++.+++.+.|+.|.|+||||+|||++|+|+.+|.++|.++|++||+.|||+++|||+|++-+||+|++.+
T Consensus 267 ~~~~~~~~~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dgeIs~veYyk~qYni~I~dl~QPlliS~~ 346 (845)
T KOG1042|consen 267 RSCQHNTQRFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDGEISFVEYYKKQYNIEITDLNQPLLISEP 346 (845)
T ss_pred HHHhhCHHHHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecCceeeHhHHHHHhcCeEEeeCCcceEeccC
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhc-ChHHHHHhcccceEeec
Q psy2224 240 KLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIE-NSEAKEVLKRWELALDT 318 (504)
Q Consensus 240 ~~~~~~~~~~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~-~~~~~~~l~~~Gl~i~~ 318 (504)
++|..+++....++++||||+++||+|+||+||++||+++.+|+++|.+|..++..+..+|. +.+....|+.|||+++.
T Consensus 347 k~K~~~g~~~q~~~lIPELc~~TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~ 426 (845)
T KOG1042|consen 347 KDKRPKGEPPQLAMLIPELCFLTGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDS 426 (845)
T ss_pred cccCCCCCCccceeeehhhhhccCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCc
Confidence 88766666788999999999999999999999999999999999999999999999999999 88889999999999999
Q ss_pred ceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCCCeEEEEEeCCChHHHHHHHHHHHHhhcccceec
Q psy2224 319 NLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKV 397 (504)
Q Consensus 319 ~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i 397 (504)
+.++|+||+|++.+|.+++... ...+..++|.+++|. +++....+++|++++++++..+++.|++.|.+.+..+||++
T Consensus 427 ~l~~v~gRil~sEkI~~~~~~~-~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~fi~~l~r~a~~mgm~i 505 (845)
T KOG1042|consen 427 NLAEVQGRILPSEKILFGNQKV-PYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQEFINMLRRVASSMGMQI 505 (845)
T ss_pred chhhccceecCccceecCCccc-CCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHHHHHHHHHhccccceec
Confidence 9999999999999999999873 224666999999999 99999999999999999999999999999999999999999
Q ss_pred cCCeE--------------------------------------------------EEeccc-----ccC-CchhHHHHHH
Q psy2224 398 NRPNV--------------------------------------------------IVKKNL-----ASK-GALTIATKVA 421 (504)
Q Consensus 398 ~~P~~--------------------------------------------------V~~q~~-----~k~-~~~~~~~ni~ 421 (504)
..|.+ |++||+ .++ ...+++++|+
T Consensus 506 ~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~ 585 (845)
T KOG1042|consen 506 REPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIA 585 (845)
T ss_pred CCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHH
Confidence 98876 555554 344 4789999999
Q ss_pred HHHHhhhCCCceeeecCCCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhh
Q psy2224 422 IQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHK 501 (504)
Q Consensus 422 lKiN~KlGG~n~~l~~p~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~ 501 (504)
+||||||||.+|.|++|++.+|+||+||+|.+..+..|++|||||+|..+++|+|.+..|.+++|+.+.|..+|..||++
T Consensus 586 lQmnCKlGg~lW~V~IPLk~lMiVG~Dv~hd~~~k~rsvga~VAs~n~~~tr~fS~v~~~~~~qel~d~L~~~~~~ALr~ 665 (845)
T KOG1042|consen 586 LQMNCKLGGELWKVEIPLKGLMIVGFDVYHDPTLKGRSVGAFVASMNNDFTRWFSRVIEQENGQELADNLKVFLAKALRQ 665 (845)
T ss_pred HHHhhhhcCcceEEeeecccceEEEEEeecCccccCceEEEEEEeeccchhhhhhheecccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhC
Q psy2224 502 YRV 504 (504)
Q Consensus 502 ~~~ 504 (504)
|++
T Consensus 666 y~~ 668 (845)
T KOG1042|consen 666 YYE 668 (845)
T ss_pred HHH
Confidence 974
No 2
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.5e-87 Score=739.58 Aligned_cols=488 Identities=20% Similarity=0.327 Sum_probs=410.2
Q ss_pred CCcceEEEEEEecC----CCCChhHHHHHHHHhh-----hccc-ceEeec-eeeecccccCCceeE--Eeeec-------
Q psy2224 2 PTWTLNLYRIDFNP----PEDIMGVKRGLLRDHK-----DKIG-AYVFDG-TMMFTPNTIIGKEMK--LMSKK------- 61 (504)
Q Consensus 2 p~~~~y~Y~V~i~p----~~~~~~~~~~i~~~~~-----~~~~-~~~~Dg-~~lys~~~l~~~~~~--~~~~~------- 61 (504)
|++.||||||+|.| ++++++++++|++.+. +..| .++||| ++|||+.+|+.+..+ +....
T Consensus 60 ~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~ 139 (900)
T PLN03202 60 PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNN 139 (900)
T ss_pred CCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEeccccccccc
Confidence 67889999999996 4456778888877652 3335 789999 999999999865432 21110
Q ss_pred ----------------------CCCceEEEEEEEEEeeccC-------------ChhhHHHHHHHHHhhhhhcCceeccc
Q psy2224 62 ----------------------RDETPVELTIRHVRVLEYG-------------DAQYTQLFNILIRQTLRALDLKLLGR 106 (504)
Q Consensus 62 ----------------------~~~~~~~v~i~~~~~~~~~-------------~~~~~q~lniil~~~~~~~~~~~~Gr 106 (504)
.+++.|+|+|+++++++++ ..+++|+||+++|+.++..++..+||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr 219 (900)
T PLN03202 140 GNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQ 219 (900)
T ss_pred ccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceecc
Confidence 1246799999999888876 36899999999999987777889999
Q ss_pred cccCCCCC--CcCCCCceeEecceeeEEeccCCeeEEEEecccccc-chhhHHHHHHHHhcCh---hhHHHHHHHhhccc
Q psy2224 107 NYFDPAAK--EDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVL-RKETVLDAWEQCRNDK---YFYYRKFEAQMTNS 180 (504)
Q Consensus 107 ~ff~~~~~--~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f-~~~~ll~~i~~~~~~~---~~~~~~~~~~L~gl 180 (504)
+||.+... .++ ++|+|+|+||++|||+++++++||+|+++++| ++++|+|++.++.+.. ...+.++.++|+|+
T Consensus 220 ~ff~~~~~~~~~l-~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl 298 (900)
T PLN03202 220 SFFHNDPKNFVDL-GGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNL 298 (900)
T ss_pred ccCCCCCcccccC-CCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCC
Confidence 99976532 234 78999999999999999999999999999987 7999999999875322 12345799999999
Q ss_pred EEEEeeCCeEEEEeccccCCCCCcccccC----------CccccHHHHHHHhcCccccCC-CCceEEeecccccccCCCc
Q psy2224 181 IVLTKYNNKTYRVDDIQYDVTPCSTFPMK----------GENVSYIDYYQKKYNETIRNR-NQPMIVHKSKLRELRAGQS 249 (504)
Q Consensus 181 ~V~~~y~~r~~rI~~i~~~~~~~~~F~~~----------~~~isv~eYf~~~Y~i~L~~p-~~Plv~~~~~~~~~~~~~~ 249 (504)
+|.++|++|+|+|++|+|..++..+|+.+ ++++||+|||+++||++|+|| ++|||.++++ .
T Consensus 299 ~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~--------~ 370 (900)
T PLN03202 299 RVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKP--------K 370 (900)
T ss_pred EEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCC--------C
Confidence 99999999999999999999999999764 238999999999999999996 9999998765 4
Q ss_pred ceEEeccccccccCCChhhhhch-hhhHHHHHHhcCCHHHHHHHHHHHHHHhcChHHHHHhcccceEeecceeEEEEEEe
Q psy2224 250 EIIYLVPELCYLTGLSDDMRADF-RLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHIL 328 (504)
Q Consensus 250 ~~~~lP~Elc~i~gl~~~~~~~~-~~~k~~~~~~~~~P~~r~~~i~~~~~~l~~~~~~~~l~~~Gl~i~~~~~~v~~rvL 328 (504)
+++|||||||.|+|.+..+++.. .+..+|+++++.+|.+|.+.|.++++.++ .+.++.|++|||+|+++|++|+||+|
T Consensus 371 ~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~-~~~~~~l~~fGi~i~~~~~~V~gRvL 449 (900)
T PLN03202 371 RPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSN-YDADPMLRSCGISISSQFTQVEGRVL 449 (900)
T ss_pred CCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhC-CCCchHHHHCCcEecCCceEEeEEEc
Confidence 68999999999997655443332 23458899999999999999999999887 34568999999999999999999999
Q ss_pred CCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCCCeEEEEEeCCChHHHHHHHHHHHHhhcccceeccCCe------
Q psy2224 329 PPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPN------ 401 (504)
Q Consensus 329 ~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i~~P~------ 401 (504)
+||+|.|+++.. ..+.+|+|+ +++ +|++++++++|+++++.+. .++++|++.|.+.|+.+||.+..|.
T Consensus 450 ~~P~I~y~~~~~--~~p~~g~Wn--~~~~kf~~~~~l~~W~vv~~~~~-~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~ 524 (900)
T PLN03202 450 PAPKLKVGNGED--FFPRNGRWN--FNNKKLVEPTKIERWAVVNFSAR-CDIRHLVRDLIKCGEMKGINIEPPFDVFEEN 524 (900)
T ss_pred CCceeecCCCcc--cCCCCCcee--cCCCEecCCCccceEEEEEecCc-hhHHHHHHHHHHHHHHCCceeCCCccccccc
Confidence 999999998763 356789999 788 9999999999999977543 3688999999999999999886542
Q ss_pred ----------------------------E--------------------------EEecccccC-CchhHHHHHHHHHHh
Q psy2224 402 ----------------------------V--------------------------IVKKNLASK-GALTIATKVAIQLCC 426 (504)
Q Consensus 402 ----------------------------~--------------------------V~~q~~~k~-~~~~~~~ni~lKiN~ 426 (504)
+ |.|||+... .++|+++|||||||+
T Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~ 604 (900)
T PLN03202 525 PQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINA 604 (900)
T ss_pred cccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhh
Confidence 0 678887543 568999999999999
Q ss_pred hhCCCceeee------cCC---CCeEEEEEEEeeCCCCC--CceEEEEEEeeC-CCCceeeeEeeecCCCcchHHhH---
Q psy2224 427 KIGGAPWSVA------VPL---KGLMVLGFDVTHDSDLK--GSSYGALVASID-PQMSSWFSRVSPHRSGNELSNDI--- 491 (504)
Q Consensus 427 KlGG~n~~l~------~p~---~~tmiiG~DV~Hp~~~~--~pSi~~~vaS~d-~~~~~y~~~~~~q~~~~E~i~~l--- 491 (504)
||||+||.++ +|. .+|||||+||+||++++ .|||||+|||+| .++++|++.+++|.+++|++++|
T Consensus 605 KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~ 684 (900)
T PLN03202 605 KLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKP 684 (900)
T ss_pred hhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhcc
Confidence 9999998875 343 68999999999998875 499999999999 68999999999999999999986
Q ss_pred ------HHHHHHHHhhhhC
Q psy2224 492 ------AVSVVHALHKYRV 504 (504)
Q Consensus 492 ------~~~~~~~L~~~~~ 504 (504)
++||.++|+.|++
T Consensus 685 ~~~~~~~~m~~~~L~~~~~ 703 (900)
T PLN03202 685 VGDKDDDGIIRELLLDFYT 703 (900)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 7899999999873
No 3
>KOG1041|consensus
Probab=100.00 E-value=1.6e-69 Score=593.74 Aligned_cols=482 Identities=16% Similarity=0.297 Sum_probs=397.9
Q ss_pred CCcc-eEEEEEEecCCCCChhHHH-HHHHHh---hhc--cc--ceEeec-eeeecccccCC--ceeEEeee-cCCCceEE
Q psy2224 2 PTWT-LNLYRIDFNPPEDIMGVKR-GLLRDH---KDK--IG--AYVFDG-TMMFTPNTIIG--KEMKLMSK-KRDETPVE 68 (504)
Q Consensus 2 p~~~-~y~Y~V~i~p~~~~~~~~~-~i~~~~---~~~--~~--~~~~Dg-~~lys~~~l~~--~~~~~~~~-~~~~~~~~ 68 (504)
|+.. +++|+|++.++..++...+ .++..+ .+. |+ .++||| ++|||...++. ...++... +.+...+.
T Consensus 72 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (876)
T KOG1041|consen 72 TEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKTLYTKLELPEGVVTLDFDVISPKEWKKFK 151 (876)
T ss_pred CCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCceeEeccccccccceEEEEecCCCCCcceE
Confidence 4455 9999999999998777765 454432 222 43 666999 99999777773 22333221 22222399
Q ss_pred EEEEEEEeeccCC-------------hhhHHHHHHHHHhhhhhcCceeccccccCCC--CCCcCCCCceeEecceeeEEe
Q psy2224 69 LTIRHVRVLEYGD-------------AQYTQLFNILIRQTLRALDLKLLGRNYFDPA--AKEDIPQYRLEVWPGWDTSMR 133 (504)
Q Consensus 69 v~i~~~~~~~~~~-------------~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~--~~~~i~~~glei~~G~~~svr 133 (504)
++|++++++.+.. .+++|++++++++.+....+...|++||... .... .++|.|+|.||++|+|
T Consensus 152 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~-l~~g~e~~~Gf~~s~r 230 (876)
T KOG1041|consen 152 VSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAK-LGGGVEIWEGFHKSIR 230 (876)
T ss_pred EEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccc-cCCCceeeeeeeeeee
Confidence 9999998765542 4789999999999887666999999999752 2222 4889999999999999
Q ss_pred ccCCeeEEEEeccccccc-hhhHHHHHHHHhcCh-----hhHHHHHHHhhcccEEEEee--CCeEEEEeccccCCCCCcc
Q psy2224 134 QMENDIMLCVELSHKVLR-KETVLDAWEQCRNDK-----YFYYRKFEAQMTNSIVLTKY--NNKTYRVDDIQYDVTPCST 205 (504)
Q Consensus 134 ~~~~~l~lniD~~~~~f~-~~~ll~~i~~~~~~~-----~~~~~~~~~~L~gl~V~~~y--~~r~~rI~~i~~~~~~~~~ 205 (504)
+.+|+++||+|++++.|+ +.++.++++++..-. .+....++++|+||+|.++| .+|.|+|.+++.+.+...+
T Consensus 231 ~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~ 310 (876)
T KOG1041|consen 231 PTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTT 310 (876)
T ss_pred eccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCce
Confidence 999999999999999875 668999999875321 11112389999999999999 4689999999999999999
Q ss_pred cccCC---ccccHHHHHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc-C-------CChhhhhchhh
Q psy2224 206 FPMKG---ENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT-G-------LSDDMRADFRL 274 (504)
Q Consensus 206 F~~~~---~~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~-g-------l~~~~~~~~~~ 274 (504)
|+.++ +++||+|||+++||++|+||++|||+++.. .+..|+|+|||.|+ | +++.|+
T Consensus 311 F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~--------~~~~~~PmElc~i~~gQr~~k~kl~~~q~----- 377 (876)
T KOG1041|consen 311 FELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRP--------KRENFYPMELCNIVPGQRITKEKLTPNQQ----- 377 (876)
T ss_pred eeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCC--------CCCcccchhheecccCceeecccCCHHHH-----
Confidence 99765 579999999999999999999999999877 46799999999999 3 344444
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHhc-ChHHHHHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCccc
Q psy2224 275 MKPLGEITRVRPRERVAKFNVFRKRIE-NSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTP 353 (504)
Q Consensus 275 ~k~~~~~~~~~P~~r~~~i~~~~~~l~-~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~ 353 (504)
.++.+.++..|++|.+.|.+++.... +. +++|++|||.|.++|+.|+||+||||.|.|+++.. ...+..|.|+
T Consensus 378 -~~m~k~~~~~P~~R~~~i~~~~~~~~~~~--d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~-~~~p~~g~~~-- 451 (876)
T KOG1041|consen 378 -SAMIKASAVKPDQRQKLIKKVLKSSLKLS--NPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEM-PKNPTPGTWF-- 451 (876)
T ss_pred -HHhhhhhcCCHHHHHHHHHHHHHHhcccc--chhHHhcCeEEecccccccccccCCceeeccCCCC-ccCCCcCccc--
Confidence 36777888999999999999999987 33 89999999999999999999999999999999821 2367789999
Q ss_pred ccc-ccccCCCCCeEEEEEeCCC--hHHHHHHHHHHHHhhcccceecc-----CCe-E----------------------
Q psy2224 354 TRS-SVFRAPNLERWCVLTTGFM--MADTENFLQLINKAAQGMRFKVN-----RPN-V---------------------- 402 (504)
Q Consensus 354 ~~~-~~~~~~~~~~w~vv~~~~~--~~~~~~f~~~l~~~~~~~G~~i~-----~P~-~---------------------- 402 (504)
+++ +|+.|+.+..|+|+++... .++ +.|++.|.+.|+..||.+. .+. .
T Consensus 452 ~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 530 (876)
T KOG1041|consen 452 MRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKRPRKWAPTEESLEDMITEKSSMEKAAAGVQLV 530 (876)
T ss_pred cccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCcccccccccCcccchhHHHHHHHHhhhccCCCceEE
Confidence 788 9999999999999998743 334 8999999999999999997 211 0
Q ss_pred ------------------------EEecccccC----CchhHHHHHHHHHHhhhCCCceeeecC--------CCCeEEEE
Q psy2224 403 ------------------------IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSVAVP--------LKGLMVLG 446 (504)
Q Consensus 403 ------------------------V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l~~p--------~~~tmiiG 446 (504)
+.+||+... ..+||++||+||||+||||+|+.+..| ..+|||||
T Consensus 531 ~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~~~~~ptl~IG 610 (876)
T KOG1041|consen 531 FIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGPKLDSPTLFIG 610 (876)
T ss_pred EEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcccCCCCeEEEE
Confidence 678887532 358899999999999999999999754 36899999
Q ss_pred EEEeeCCCCC----CceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhhhhC
Q psy2224 447 FDVTHDSDLK----GSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYRV 504 (504)
Q Consensus 447 ~DV~Hp~~~~----~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~~~~ 504 (504)
+|||||+++. .|||||||||+|.+.++|.|.+++|++++|+|+++.+|+.++|.+|++
T Consensus 611 ~dVsHp~~~~~~~~~PSiagvv~s~~~~~~~y~g~~~~Q~~r~e~i~~~~~~~~~~l~~f~~ 672 (876)
T KOG1041|consen 611 FDVSHPAAGTSFDGNPSIVGVVYNLDWHPQKFAGFVRFQKSRQEVIQDLGEMIRELLRSFRK 672 (876)
T ss_pred EeeeCCCcCCCcCCCccEEEEEecccccchhhcceEEEecCChhhhcchHHHHHHHHHHHHH
Confidence 9999999872 599999999999999999999999999999999999999999999974
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.3e-40 Score=347.41 Aligned_cols=229 Identities=34% Similarity=0.651 Sum_probs=206.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHhc-ChHHHHHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcc
Q psy2224 274 LMKPLGEITRVRPRERVAKFNVFRKRIE-NSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTT 352 (504)
Q Consensus 274 ~~k~~~~~~~~~P~~r~~~i~~~~~~l~-~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~ 352 (504)
+|++++++++.+|.+|++.|.++++++. +.+..+.|++|||+|+++|++|+||+|+||+|.|+++.. ..+..|+|++
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~--~~~~~~~w~~ 79 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFV--YANSNADWKR 79 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCcc--CCCCCCCcch
Confidence 7899999999999999999999999998 554557999999999999999999999999999998752 3456799986
Q ss_pred cccc-ccccCCCCCeEEEEEeCCChHHHHHHHHHHHHhhcccceeccCCeE-----------------------------
Q psy2224 353 PTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNV----------------------------- 402 (504)
Q Consensus 353 ~~~~-~~~~~~~~~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i~~P~~----------------------------- 402 (504)
.+++ .|+.++++++|+++++.++.+.++.|++.|.+.++++||.+..|.+
T Consensus 80 ~~~~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~lvvvi 159 (448)
T cd04658 80 EIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFRSDPQLVVII 159 (448)
T ss_pred hhcCCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhcCCCcEEEEE
Confidence 6777 7899999999999999888889999999999999999999987765
Q ss_pred ---------------------EEeccccc-----C-CchhHHHHHHHHHHhhhCCCceeeecC---CCCeEEEEEEEeeC
Q psy2224 403 ---------------------IVKKNLAS-----K-GALTIATKVAIQLCCKIGGAPWSVAVP---LKGLMVLGFDVTHD 452 (504)
Q Consensus 403 ---------------------V~~q~~~k-----~-~~~~~~~ni~lKiN~KlGG~n~~l~~p---~~~tmiiG~DV~Hp 452 (504)
|++||+.. . +..+++.||++|||+||||+||.++.+ ..+|||||+||+||
T Consensus 160 lp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~~~~~~~tmiiGidv~h~ 239 (448)
T cd04658 160 LPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPPFILKNTMIVGIDVYHD 239 (448)
T ss_pred ECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccCCCCCCCeEEEEEeeecC
Confidence 66777642 2 356899999999999999999999876 58999999999999
Q ss_pred CCCCCceEEEEEEeeCCCCceeeeEeeecCCCcch-HHhHHHHHHHHHhhhhC
Q psy2224 453 SDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNEL-SNDIAVSVVHALHKYRV 504 (504)
Q Consensus 453 ~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~-i~~l~~~~~~~L~~~~~ 504 (504)
++.+.||+||+|||+|.++++|++.++.|..++|+ +++|+++|.++|+.|++
T Consensus 240 ~~~~~~Si~a~vas~~~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~ 292 (448)
T cd04658 240 TITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKK 292 (448)
T ss_pred CCCCCCcEEEEEEEcCCCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHH
Confidence 98778999999999999999999999999999998 99999999999999973
No 5
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.3e-37 Score=321.91 Aligned_cols=195 Identities=26% Similarity=0.414 Sum_probs=170.6
Q ss_pred HHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCCCeEEEEEeCCCh------HHH
Q psy2224 307 EVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMM------ADT 379 (504)
Q Consensus 307 ~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~~~w~vv~~~~~~------~~~ 379 (504)
++|++|||+|+++|++|+||+|+||+|.|+++.. ...+.+|+|+ +++ +|++++.+++|++|+++.+. +.+
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~-~~~~~~g~W~--~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~ 77 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK-TVPPRNGSWN--LRGKKFLEGGPIRSWAVLNFAGPRRSREERADL 77 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc-ccCCCCCcee--ecCcccCCCcccceEEEEEecCccccchhHHHH
Confidence 3688999999999999999999999999996543 3457789999 788 99999999999999987431 379
Q ss_pred HHHHHHHHHhhcccceeccC-----------------------CeE-------------------------EEeccccc-
Q psy2224 380 ENFLQLINKAAQGMRFKVNR-----------------------PNV-------------------------IVKKNLAS- 410 (504)
Q Consensus 380 ~~f~~~l~~~~~~~G~~i~~-----------------------P~~-------------------------V~~q~~~k- 410 (504)
+.|++.|.+.|+.+||.+.. |.. |++||+..
T Consensus 78 ~~F~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~ 157 (426)
T cd04657 78 RNFVDQLVKTVIGAGINITTAIASVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAK 157 (426)
T ss_pred HHHHHHHHHHHHhcCCcccccccccchhHHHHHHHHHhhccCCCCEEEEEEcCCCcchHHHHHHHHhhcCCcccEEEccc
Confidence 99999999999999997741 111 67777642
Q ss_pred ----CCchhHHHHHHHHHHhhhCCCceeeecC------CCCeEEEEEEEeeCCCC---CCceEEEEEEeeCCCCceeeeE
Q psy2224 411 ----KGALTIATKVAIQLCCKIGGAPWSVAVP------LKGLMVLGFDVTHDSDL---KGSSYGALVASIDPQMSSWFSR 477 (504)
Q Consensus 411 ----~~~~~~~~ni~lKiN~KlGG~n~~l~~p------~~~tmiiG~DV~Hp~~~---~~pSi~~~vaS~d~~~~~y~~~ 477 (504)
+++.+++.||+||||+||||+||.++.| ..+|||||+||+||+++ +.|||||+|||+|.++++|++.
T Consensus 158 ~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d~~~~~y~~~ 237 (426)
T cd04657 158 KVTKKGNPQYFANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHLAQYPAS 237 (426)
T ss_pred ccccccchHHHHHHHHHHHHhcCCEeeecccccccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecCCcccccceE
Confidence 2468999999999999999999999864 58999999999999886 5799999999999999999999
Q ss_pred eeecCCCcchHHhHHHHHHHHHhhhhC
Q psy2224 478 VSPHRSGNELSNDIAVSVVHALHKYRV 504 (504)
Q Consensus 478 ~~~q~~~~E~i~~l~~~~~~~L~~~~~ 504 (504)
+++|++++|++++|++||.++|++|++
T Consensus 238 ~~~q~~~~e~i~~l~~~~~~~l~~~~~ 264 (426)
T cd04657 238 VRLQSHRQEIIDDLESMVRELLRAFKK 264 (426)
T ss_pred EEEeCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999973
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.96 E-value=1.4e-28 Score=252.26 Aligned_cols=170 Identities=16% Similarity=0.292 Sum_probs=144.9
Q ss_pred ceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCC-CeEEEEEeCCChHHHHHHHHHHHHhhccccee
Q psy2224 319 NLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNL-ERWCVLTTGFMMADTENFLQLINKAAQGMRFK 396 (504)
Q Consensus 319 ~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~-~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~ 396 (504)
.+++|+||+||||+|.|+++ |+ +++ +|..|+.+ .+|++++++++ ..++|++.|.+.++++||.
T Consensus 1 ~~~~v~grvL~~p~i~~~~~-----------w~--~~~~~f~~~~~~~~~W~vi~~~~~--~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK-----------FL--RNIGPFEKPAKITNPVAVIAFRNE--EVDDLVKRLADACRQLGMK 65 (393)
T ss_pred CceEEeeEecCCCceEecCC-----------cc--ccCCeeCCCCEeCCeEEEEEcccH--HHHHHHHHHHHHHHhCCCc
Confidence 36899999999999999753 88 677 89998888 99999999754 3568999999999999999
Q ss_pred ccC-CeE---------------------------------------------------EEecccc-----c-CCchhHHH
Q psy2224 397 VNR-PNV---------------------------------------------------IVKKNLA-----S-KGALTIAT 418 (504)
Q Consensus 397 i~~-P~~---------------------------------------------------V~~q~~~-----k-~~~~~~~~ 418 (504)
+.. |.. |++||+. + .+..++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ 145 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIKAGVQLVIFILKEKKPPLHDEIKRLEAKSDIPSQVIQLKTAKKMRRLKQTLD 145 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhhcCCCEEEEEEcCCCccHHHHHHHHHhccCCceEEEehhhhccccccHHHHH
Confidence 876 421 5677764 2 25679999
Q ss_pred HHHHHHHhhhCCCceeeecC---CCCeEEEEEEEeeCCCC---CCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHH
Q psy2224 419 KVAIQLCCKIGGAPWSVAVP---LKGLMVLGFDVTHDSDL---KGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIA 492 (504)
Q Consensus 419 ni~lKiN~KlGG~n~~l~~p---~~~tmiiG~DV~Hp~~~---~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~ 492 (504)
||++|||+||||+||.|+.| ..+|||||+||+||+++ ..||++|||||+|.+ +.+.+..+.|..++|++++|.
T Consensus 146 Ni~lkin~KlGG~~~~l~~~~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~~-~~~g~~~~~~~~~~~~~~~l~ 224 (393)
T cd02826 146 NLLRKVNSKLGGINYILDSPVKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSNH-TFLGGFLYVQPSREVKLQDLG 224 (393)
T ss_pred HHHHHHhhhhCCeeeEeccCCCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCCc-cccceEEEEecCccchHHHHH
Confidence 99999999999999999877 58999999999999873 579999999999976 444456788989999999999
Q ss_pred HHHHHHHhhhhC
Q psy2224 493 VSVVHALHKYRV 504 (504)
Q Consensus 493 ~~~~~~L~~~~~ 504 (504)
++++++|+.|++
T Consensus 225 ~~~~~~L~~y~~ 236 (393)
T cd02826 225 EVIKKCLDGFKK 236 (393)
T ss_pred HHHHHHHHHHHH
Confidence 999999999973
No 7
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.92 E-value=2.2e-25 Score=187.24 Aligned_cols=113 Identities=46% Similarity=0.834 Sum_probs=101.1
Q ss_pred hhHHHHHHHHhcCh--hhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCC-ccccHHHHHHHhcCccccC
Q psy2224 153 ETVLDAWEQCRNDK--YFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKG-ENVSYIDYYQKKYNETIRN 229 (504)
Q Consensus 153 ~~ll~~i~~~~~~~--~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~-~~isv~eYf~~~Y~i~L~~ 229 (504)
.+++|.+.++.+.. ..+++++.+.|+|++|.+.|+++.|+|++|+|+.+|.++|+.++ +.+||+|||+++||+.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~ 81 (117)
T cd02845 2 TTVLDRMHKLYRQETDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITD 81 (117)
T ss_pred eeHHHHHHHHHHhcccHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCcccc
Confidence 46888988886543 36888999999999999999999999999999999999998776 4899999999999999999
Q ss_pred CCCceEEeecccccccCCCcceEEeccccccccCCC
Q psy2224 230 RNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLS 265 (504)
Q Consensus 230 p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~gl~ 265 (504)
|+||||.+++++++.+++.++.+|||||||.++||+
T Consensus 82 ~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltglt 117 (117)
T cd02845 82 LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGLT 117 (117)
T ss_pred CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCCC
Confidence 999999999887665556678999999999999985
No 8
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.86 E-value=6.4e-22 Score=172.64 Aligned_cols=113 Identities=32% Similarity=0.591 Sum_probs=92.9
Q ss_pred hhHHHHHHHHhcCh----hhHHHHHHHhhcccEEEEeeCC--eEEEEeccccCCCCCcccccC-CccccHHHHHHHhcCc
Q psy2224 153 ETVLDAWEQCRNDK----YFYYRKFEAQMTNSIVLTKYNN--KTYRVDDIQYDVTPCSTFPMK-GENVSYIDYYQKKYNE 225 (504)
Q Consensus 153 ~~ll~~i~~~~~~~----~~~~~~~~~~L~gl~V~~~y~~--r~~rI~~i~~~~~~~~~F~~~-~~~isv~eYf~~~Y~i 225 (504)
++++|++.++.+.. ....+++.+.|+|++|.+.|++ +.|+|.+|+++.++.++|+.+ |+.+||+|||+++||+
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i 80 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNI 80 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT-
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhc
Confidence 57899999986432 2344569999999999999988 999999999999999999988 7899999999999999
Q ss_pred cccCCCCceEEeecccccccCCCcceEEeccccccccCCChhhhhc
Q psy2224 226 TIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRAD 271 (504)
Q Consensus 226 ~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~gl~~~~~~~ 271 (504)
+|+||+||||.++.+.+ .+.+|+|||||.|++.+...+..
T Consensus 81 ~L~~p~~Pll~~~~~~~------~~~~~lP~Elc~i~~~q~~~~~~ 120 (135)
T PF02170_consen 81 RLKYPDLPLLNVKSKKK------KQPIYLPPELCFIVPGQRYKKKL 120 (135)
T ss_dssp --SSTTSEEEEECSTTT------TTCEEEECCGEEEETTTBB-SS-
T ss_pred ccccCCCCeEEeccCCC------CceEEEChhHhcccCCcHHHHhc
Confidence 99999999999988731 24899999999999776655443
No 9
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.81 E-value=5.4e-20 Score=155.29 Aligned_cols=104 Identities=27% Similarity=0.467 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhcC-------hhhHHHHHHHhhcccEEEEeeC--CeEEEEeccccCCCCCcccccC-CccccHHHHHHHh
Q psy2224 153 ETVLDAWEQCRND-------KYFYYRKFEAQMTNSIVLTKYN--NKTYRVDDIQYDVTPCSTFPMK-GENVSYIDYYQKK 222 (504)
Q Consensus 153 ~~ll~~i~~~~~~-------~~~~~~~~~~~L~gl~V~~~y~--~r~~rI~~i~~~~~~~~~F~~~-~~~isv~eYf~~~ 222 (504)
++|+|+++++.+. .+..+.++.++|+|++|.++|+ ++.|+|.+|++.++++. |+.. |+++||+|||+++
T Consensus 2 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~k 80 (115)
T cd02825 2 DPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKER 80 (115)
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHH
Confidence 5788998887532 2345678999999999999997 89999999999888877 7644 4689999999999
Q ss_pred cCccccCCCCceEEeecccccccCCCcceEEecccccccc
Q psy2224 223 YNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT 262 (504)
Q Consensus 223 Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~ 262 (504)
||++|+||+||||.++++.+ ..+.+|+|||||.|+
T Consensus 81 Y~~~l~~p~~Pll~~~~~~~-----~~~~~~lp~Elc~i~ 115 (115)
T cd02825 81 YNLTLTDLNQPLLIVKFSSK-----KSYSILLPPELCVIT 115 (115)
T ss_pred cCCcccCCCCCEEEecCccc-----CCCceEEchheEEeC
Confidence 99999999999999987632 136799999999875
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.81 E-value=6.8e-20 Score=155.05 Aligned_cols=102 Identities=23% Similarity=0.365 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhcC------hhhHHHHHHHhhcccEEEEeeC---CeEEEEeccccCCCCCcccccCCc--cccHHHHHHH
Q psy2224 153 ETVLDAWEQCRND------KYFYYRKFEAQMTNSIVLTKYN---NKTYRVDDIQYDVTPCSTFPMKGE--NVSYIDYYQK 221 (504)
Q Consensus 153 ~~ll~~i~~~~~~------~~~~~~~~~~~L~gl~V~~~y~---~r~~rI~~i~~~~~~~~~F~~~~~--~isv~eYf~~ 221 (504)
++++|++.++.+. ....+.++.++|+|++|.++|+ +|.|+|.+++++.++..+|+.+++ .+||+|||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~ 81 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKE 81 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHH
Confidence 5788998888632 1356678999999999999997 799999999998888899988775 9999999999
Q ss_pred hcCccccCCCCceEEeecccccccCCCcceEEecccccccc
Q psy2224 222 KYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT 262 (504)
Q Consensus 222 ~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~ 262 (504)
+||++|+||++|||+++++ .+.+|+|||||.|+
T Consensus 82 ~y~~~l~~p~lP~v~~g~~--------~~~~~~P~Elc~i~ 114 (114)
T cd02846 82 KYNIRLKYPNLPCLQVGRK--------GKPNYLPMELCNIV 114 (114)
T ss_pred HcCCcccCCCCCEEEeCCC--------CCCcEecceeEEeC
Confidence 9999999999999999876 46899999999874
No 11
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.77 E-value=2.3e-18 Score=171.42 Aligned_cols=91 Identities=32% Similarity=0.565 Sum_probs=85.0
Q ss_pred chhHHHHHHHHHHhhhCCC-ceeeecCC----CCeEEEEEEEeeCCCCC--CceEEEEEEeeCCCCceeeeEeeecCCCc
Q psy2224 413 ALTIATKVAIQLCCKIGGA-PWSVAVPL----KGLMVLGFDVTHDSDLK--GSSYGALVASIDPQMSSWFSRVSPHRSGN 485 (504)
Q Consensus 413 ~~~~~~ni~lKiN~KlGG~-n~~l~~p~----~~tmiiG~DV~Hp~~~~--~pSi~~~vaS~d~~~~~y~~~~~~q~~~~ 485 (504)
..+++.||++|||+||||. .|.++.|. .+|||||+||+|++++. .||++|+|+|+|.+.++|.+.++.|..++
T Consensus 43 ~~~~~~ni~lkinaKlGG~n~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~~~~ 122 (302)
T PF02171_consen 43 SKQILNNIALKINAKLGGINPWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQDSGQ 122 (302)
T ss_dssp HHHHHHHHHHHHHHHTTTBSEEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHhCCCeeeeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEeccch
Confidence 4799999999999999999 57777765 79999999999999875 79999999999999999999999999999
Q ss_pred chHHhHHHHHHHHHhhhh
Q psy2224 486 ELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 486 E~i~~l~~~~~~~L~~~~ 503 (504)
|++++|++++.++|+.|+
T Consensus 123 e~~~~l~~~~~~~L~~~~ 140 (302)
T PF02171_consen 123 EIIDNLEEIIKEALKEFK 140 (302)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHHHHHHHHH
Confidence 999999999999999996
No 12
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.69 E-value=3.2e-17 Score=140.73 Aligned_cols=89 Identities=27% Similarity=0.508 Sum_probs=74.0
Q ss_pred HHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCCc--cccHHHHHHHhcCccccCCCCceEEeecccc--------
Q psy2224 173 FEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGE--NVSYIDYYQKKYNETIRNRNQPMIVHKSKLR-------- 242 (504)
Q Consensus 173 ~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~~--~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~-------- 242 (504)
..+.|+|++|.+.|++|.|+|++|+ +.+|.++|+.+++ .+||+|||+++||++|+||+||||.++.-.+
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~~~ 105 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLHNR 105 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceecccc
Confidence 4578999999999999999999999 9999999987654 6999999999999999999999999874321
Q ss_pred -ccc------CCCcceEEecccccccc
Q psy2224 243 -ELR------AGQSEIIYLVPELCYLT 262 (504)
Q Consensus 243 -~~~------~~~~~~~~lP~Elc~i~ 262 (504)
.++ .+....++||||||.+.
T Consensus 106 ~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 106 FEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred cccccccccccccceEEEeChHHhccc
Confidence 000 12234789999999986
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.42 E-value=9.2e-14 Score=98.44 Aligned_cols=50 Identities=32% Similarity=0.641 Sum_probs=40.6
Q ss_pred eeccccccCCCCC-CcCCCCceeEecceeeEEeccCCeeEEEEeccccccch
Q psy2224 102 KLLGRNYFDPAAK-EDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRK 152 (504)
Q Consensus 102 ~~~Gr~ff~~~~~-~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~ 152 (504)
+.+||+||.++.. .++ ++|+|+|+||++|||++.++|+||||+++++|+.
T Consensus 1 ~~vgrsFF~~~~~~~~l-~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~ 51 (52)
T PF08699_consen 1 TAVGRSFFPPSGGPVDL-GGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYK 51 (52)
T ss_dssp EEETTEEEE------EE-ETTEEEEEEEEEEEEEETTEEEEEEECCEECCC-
T ss_pred CccccccCCCCCCCccC-CCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEEC
Confidence 4689999987653 455 7899999999999999999999999999999863
No 14
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.35 E-value=1.3e-12 Score=107.92 Aligned_cols=66 Identities=30% Similarity=0.554 Sum_probs=60.7
Q ss_pred HHhhcccEEEEeeCC----eEEEEeccccCCCCCcccccCCccccHHHHHHHhcCccccCCCCceEEeecc
Q psy2224 174 EAQMTNSIVLTKYNN----KTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSK 240 (504)
Q Consensus 174 ~~~L~gl~V~~~y~~----r~~rI~~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~L~~p~~Plv~~~~~ 240 (504)
.+.+.|..|++.|+| ++|+|++|.++.+|.++|+.++ .+|++|||+++|||.|++++||||.++..
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~ 107 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGPE-YETFEEYYKKKYKLDIQNLNQPLLDVDHT 107 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCCC-CccHHHHHHHhcCeEeccCCCCcEeecCc
Confidence 356899999999998 8999999999999999998665 89999999999999999999999998754
No 15
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.33 E-value=1.2e-11 Score=128.05 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcccceeccCCeEEEecccccC-CchhHHHHHHHHHHhhhCCCceeeecC-CCCeEEEEEEEeeCCCCCC
Q psy2224 380 ENFLQLINKAAQGMRFKVNRPNVIVKKNLASK-GALTIATKVAIQLCCKIGGAPWSVAVP-LKGLMVLGFDVTHDSDLKG 457 (504)
Q Consensus 380 ~~f~~~l~~~~~~~G~~i~~P~~V~~q~~~k~-~~~~~~~ni~lKiN~KlGG~n~~l~~p-~~~tmiiG~DV~Hp~~~~~ 457 (504)
.++-+.+++.+-..|+.. ++|..+++.+. +..+++.||++|||+|+||+||.|+.+ ..+|||||+||+|++.+ .
T Consensus 129 ~~~Y~~iK~~~~~~gipt---Q~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~~~~~~~iIGidv~~~~~~-~ 204 (404)
T cd04659 129 FDLYDRLKAKLLRLGIPT---QFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDADSDPADLYIGIGFARSRDG-E 204 (404)
T ss_pred cCHHHHHHHHHHhcCCce---EEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccCCCCCeEEEEEEEEEcCCC-C
Confidence 456666666664444322 12444555543 568899999999999999999999887 88999999999999865 3
Q ss_pred ceEEEEEEeeCCCCceeeeEeeecCCCcch-----HHhHHHHHHHHHhhhhC
Q psy2224 458 SSYGALVASIDPQMSSWFSRVSPHRSGNEL-----SNDIAVSVVHALHKYRV 504 (504)
Q Consensus 458 pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~-----i~~l~~~~~~~L~~~~~ 504 (504)
.+++|+++..|.+...+ +..+.+.++. .++|.+++.++|+.|++
T Consensus 205 ~~~~~~a~vf~~~g~g~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~ 253 (404)
T cd04659 205 VRVTGCAQVFDSDGLGL---ILRGAPIEEPTEDRSPADLKDLLKRVLEGYRE 253 (404)
T ss_pred EEEEEEEEEEcCCCCEE---EEecCccCCcccccCHHHHHHHHHHHHHHHHH
Confidence 44556666666554221 2222333333 35799999999999973
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=2.8 Score=44.23 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred EEecccccC----CchhHHHHHHHHHHhhhCCCceeeecCC-CCeEEEEEEEeeCCCCCCceEEEEEEeeCCC--Cceee
Q psy2224 403 IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSVAVPL-KGLMVLGFDVTHDSDLKGSSYGALVASIDPQ--MSSWF 475 (504)
Q Consensus 403 V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l~~p~-~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~--~~~y~ 475 (504)
|++|++... ...-++.|++.|+-+|-+|+++.+..-. .-+-|+|+||+.-+-+ ...+-|+..-.|+. .-+|+
T Consensus 431 ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~gpvDaivGlDvsr~~~g-n~tV~gct~~f~seg~l~eyy 509 (685)
T COG1431 431 IPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGLGPVDAIVGLDVSRVSEG-NWTVEGCTSCFVSEGGLEEYY 509 (685)
T ss_pred CcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccCCCccceeeeeeeEEeeC-CeEEeeeeEEEeccCceEEee
Confidence 556655422 3456899999999999999999996543 3469999999987643 45565655544533 33444
Q ss_pred e
Q psy2224 476 S 476 (504)
Q Consensus 476 ~ 476 (504)
-
T Consensus 510 ~ 510 (685)
T COG1431 510 H 510 (685)
T ss_pred e
Confidence 3
No 17
>PF02427 PSI_PsaE: Photosystem I reaction centre subunit IV / PsaE; InterPro: IPR003375 PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains []. This subunit may form complexes with ferredoxin and ferredoxin-oxidoreductase in the photosystem I reaction centre.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 1PSF_A 1PSE_A 2WSF_E 2WSC_E 2O01_E 2WSE_E 1GXI_E 1JB0_E 3PCQ_E 1QP2_A ....
Probab=35.89 E-value=42 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=18.7
Q ss_pred EEEEEeeCCCCceeeeEeeecC
Q psy2224 461 GALVASIDPQMSSWFSRVSPHR 482 (504)
Q Consensus 461 ~~~vaS~d~~~~~y~~~~~~q~ 482 (504)
+|-|+|+|.+..+|+.-+++-.
T Consensus 20 vGtV~svdqs~i~YPV~VRF~k 41 (61)
T PF02427_consen 20 VGTVASVDQSGIRYPVVVRFDK 41 (61)
T ss_dssp EEEEEEETTSSSSSSEEEE-SS
T ss_pred cceEEEEccCCccccEEEEEEE
Confidence 7899999999999999888754
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=34.96 E-value=1.8e+02 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=39.2
Q ss_pred cCCCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCc-eeeeEeeecC-CCcchHHhHHHHHHHHHhhh
Q psy2224 437 VPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMS-SWFSRVSPHR-SGNELSNDIAVSVVHALHKY 502 (504)
Q Consensus 437 ~p~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~-~y~~~~~~q~-~~~E~i~~l~~~~~~~L~~~ 502 (504)
++..|.-|-++|+||=. +.-.|+|+|.-.|..+. +.|=.+.+.. .+..-...|.+++..+++..
T Consensus 7 L~~~P~rIE~fDiSh~~--G~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~~~~dDy~~M~Evl~RR~~~~ 72 (155)
T PF08459_consen 7 LPKLPRRIECFDISHIQ--GSDTVGSMVVFENGKPDKSEYRRFNIKTVDGGDDYAAMREVLTRRFKRL 72 (155)
T ss_dssp SSS--SEEEEEEEEECT--TTCEEEEEEEEETTEE-GGG-EEEEEE--STT-HHHHHHHHHHHHHCCC
T ss_pred CCCCCCEEEEEECcccC--CcccEEEEEEEECCccChhhCceEecCCCCCCcHHHHHHHHHHHHHhcc
Confidence 45557889999999985 35678999988885544 3444556653 23344555777777776543
No 19
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=28.97 E-value=61 Score=24.05 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=19.4
Q ss_pred EEEEEeeCCCCceeeeEeeecC
Q psy2224 461 GALVASIDPQMSSWFSRVSPHR 482 (504)
Q Consensus 461 ~~~vaS~d~~~~~y~~~~~~q~ 482 (504)
+|-|+|+|.+..+|+..+++-.
T Consensus 22 vGtV~svD~sgi~YPV~VRF~k 43 (71)
T PRK02749 22 VGTVASVDKSGIKYPVIVRFDK 43 (71)
T ss_pred cceEEEEccCCCeeeEEEEeee
Confidence 7889999999999999988754
No 20
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=28.85 E-value=57 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=19.3
Q ss_pred EEEEEeeCCCCceeeeEeeecC
Q psy2224 461 GALVASIDPQMSSWFSRVSPHR 482 (504)
Q Consensus 461 ~~~vaS~d~~~~~y~~~~~~q~ 482 (504)
+|-|+|+|.+..+|+.-+++..
T Consensus 21 vGtV~svd~~gi~YPV~VRF~k 42 (64)
T CHL00125 21 IGTVATVDQSGIRYPVLVRFEK 42 (64)
T ss_pred cceEEEEcCCCCCccEEEEEee
Confidence 6889999999999999988764
No 21
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=26.05 E-value=3.3e+02 Score=25.34 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=32.9
Q ss_pred CCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCceeeeEeeecCCCcch---HHhHHHH--HHHHHhhh
Q psy2224 439 LKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNEL---SNDIAVS--VVHALHKY 502 (504)
Q Consensus 439 ~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~---i~~l~~~--~~~~L~~~ 502 (504)
..+.+|-|+|++|.. .+.-.+||+|.---.+..-....++..+-...= --.|.|. +.++++..
T Consensus 23 ~~~~~I~gvDiS~~~-~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PYIPG~LafRE~p~l~~~~~~l 90 (208)
T cd06559 23 GEVRLVAGVDVSYKK-DGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPYIPGLLAFREGPPLLEALEKL 90 (208)
T ss_pred CCccEEEEEEeeecc-CCCeEEEEEEEEECCCCcEEEEEEEEEecCCCCcchhHHHhhHHHHHHHHHhC
Confidence 467899999999985 234556666544311233233333222221111 2346666 66666553
No 22
>PHA00687 hypothetical protein
Probab=21.06 E-value=53 Score=22.12 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=26.5
Q ss_pred eEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhc
Q psy2224 251 IIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIE 301 (504)
Q Consensus 251 ~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~ 301 (504)
..-+|||-+.+... .+...+++..|-.|.+.|++..+++.
T Consensus 8 qttlppeamrllqq-----------aaqtpitradplarvkaiekatervk 47 (56)
T PHA00687 8 QTTLPPEAMRLLQQ-----------AAQTPITRADPLARVKAIEKATERVK 47 (56)
T ss_pred cccCCHHHHHHHHH-----------HhcCCccccChHHHHHHHHHHHHHHH
Confidence 35688887777611 11223455688899999988877765
Done!