Query psy2224
Match_columns 504
No_of_seqs 171 out of 1048
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:21:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 6.4E-90 2.2E-94 761.1 48.7 484 2-503 52-656 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 5.9E-78 2E-82 665.2 35.1 484 4-503 67-825 (1046)
3 1u04_A Argonaute, hypothetical 100.0 3.3E-63 1.1E-67 533.3 18.3 461 1-503 18-613 (771)
4 1yvu_A Hypothetical protein AQ 100.0 9.5E-59 3.3E-63 499.3 17.3 420 35-500 47-556 (706)
5 3ho1_A Argonaute; argonaute, p 100.0 2.5E-45 8.7E-50 388.1 31.8 448 1-503 21-531 (685)
6 3qir_A PIWI-like protein 2; st 100.0 2.1E-33 7E-38 244.2 9.0 143 151-293 1-147 (148)
7 2xfm_A MIWI, PIWI-like protein 100.0 3.1E-33 1.1E-37 245.6 9.7 146 151-296 1-150 (150)
8 2yha_A Post-transcriptional ge 100.0 8.5E-30 2.9E-34 258.1 14.7 150 354-503 2-226 (388)
9 2yhb_A QDE-2, post-transcripti 100.0 5.2E-29 1.8E-33 255.6 14.4 151 354-504 2-227 (437)
10 3o7v_X PIWI-like protein 1; PI 100.0 1.2E-28 4E-33 207.5 9.3 119 153-271 2-124 (124)
11 1vyn_A Argonaute2; nucleic aci 99.9 1.8E-23 6E-28 182.1 8.4 103 151-262 3-119 (143)
12 3mj0_A Protein argonaute-2; ar 99.9 3.7E-22 1.3E-26 168.5 7.3 102 152-262 2-117 (124)
13 2w42_A PIWI, putative uncharac 99.8 3.8E-18 1.3E-22 174.9 13.5 172 327-503 5-238 (427)
14 1r6z_P Chimera of maltose-bind 99.6 3.1E-16 1.1E-20 166.1 7.7 105 149-262 381-499 (509)
15 4g0o_A Protein argonaute 5; MI 99.5 2.1E-14 7.1E-19 124.3 4.8 79 357-435 4-139 (139)
16 4g0x_A Protein argonaute 1; MI 99.4 6.8E-14 2.3E-18 122.3 4.9 79 357-435 4-147 (147)
17 3luc_A Protein argonaute-2; MI 99.4 1.8E-13 6.1E-18 118.3 6.4 77 356-432 2-138 (138)
18 2qvw_A GLP_546_48378_50642; di 99.4 2.5E-13 8.6E-18 147.4 8.8 97 172-268 151-258 (756)
19 4g0m_A Protein argonaute 2; MI 99.4 1.2E-13 4.2E-18 121.1 2.9 79 357-435 4-150 (150)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=6.4e-90 Score=761.14 Aligned_cols=484 Identities=18% Similarity=0.324 Sum_probs=408.0
Q ss_pred CCcceEEEEEEecCCCCChhHHHHHHHHhh-----hccc--ceEeec-eeeecccccCCce--eEEeee-c--CCCceEE
Q psy2224 2 PTWTLNLYRIDFNPPEDIMGVKRGLLRDHK-----DKIG--AYVFDG-TMMFTPNTIIGKE--MKLMSK-K--RDETPVE 68 (504)
Q Consensus 2 p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~-----~~~~--~~~~Dg-~~lys~~~l~~~~--~~~~~~-~--~~~~~~~ 68 (504)
|++.+|||||+|.|+.++++++++|++.+. +.|| .++||| ++|||+.+|+... .++.+. + .+++.|+
T Consensus 52 ~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~ 131 (861)
T 4f3t_A 52 PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFK 131 (861)
T ss_dssp CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------CEE
T ss_pred CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCCCCCcEEE
Confidence 677899999999999999999998877432 4576 469999 8999999998643 344332 1 2356799
Q ss_pred EEEEEEEeeccC-------------ChhhHHHHHHHHHhhhhhcCceeccccccCCCCCCcCC-CCceeEecceeeEEec
Q psy2224 69 LTIRHVRVLEYG-------------DAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIP-QYRLEVWPGWDTSMRQ 134 (504)
Q Consensus 69 v~i~~~~~~~~~-------------~~~~~q~lniil~~~~~~~~~~~~Gr~ff~~~~~~~i~-~~glei~~G~~~svr~ 134 (504)
|+|+++++++++ .++++|+||+|+|+. .+.++..+||+||++......+ ++|+|+|+||++|||+
T Consensus 132 V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~-~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~ 210 (861)
T 4f3t_A 132 VSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL-PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRP 210 (861)
T ss_dssp EEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH-HHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEE
T ss_pred EEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh-ccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEe
Confidence 999999999874 368999999999995 4567899999999876543332 7899999999999999
Q ss_pred cCCeeEEEEecccccc-chhhHHHHHHHHhcC----------hhhHHHHHHHhhcccEEEEee---CCeEEEEeccccCC
Q psy2224 135 MENDIMLCVELSHKVL-RKETVLDAWEQCRND----------KYFYYRKFEAQMTNSIVLTKY---NNKTYRVDDIQYDV 200 (504)
Q Consensus 135 ~~~~l~lniD~~~~~f-~~~~ll~~i~~~~~~----------~~~~~~~~~~~L~gl~V~~~y---~~r~~rI~~i~~~~ 200 (504)
++++++||+|+++++| ++++|+|++.++.+. .+..+.++.++|+|++|.++| ++|+|+|.+|++..
T Consensus 211 ~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~p 290 (861)
T 4f3t_A 211 SLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRP 290 (861)
T ss_dssp CSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEE
T ss_pred cCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCC
Confidence 9999999999999976 689999999987531 234678899999999999999 57999999999877
Q ss_pred CCCccccc--CCc---cccHHHHHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc-------CCChhh
Q psy2224 201 TPCSTFPM--KGE---NVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT-------GLSDDM 268 (504)
Q Consensus 201 ~~~~~F~~--~~~---~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~-------gl~~~~ 268 (504)
++..+|.. ++| ++||+|||+++||++|+||+||||+++++ .+.+|||||||.|+ ||+++|
T Consensus 291 a~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~--------~~~~ylP~Elc~i~~gQ~~~~~Lt~~q 362 (861)
T 4f3t_A 291 ASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE--------QKHTYLPLEVCNIVAGQRCIKKLTDNQ 362 (861)
T ss_dssp TTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT--------TTTEEEEGGGEEECTTCBCCSCCCHHH
T ss_pred CCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCC--------CCCccccceeEEeeCCccccccCCHHH
Confidence 77788963 222 79999999999999999999999999866 36799999999998 788888
Q ss_pred hhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcChHHHHHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCC
Q psy2224 269 RADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDA 348 (504)
Q Consensus 269 ~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g 348 (504)
+++ +++.++..|.+|.+.|.++++.++ .+.+++|++|||+|+++|++|+||+||||+|.|+++......+.+|
T Consensus 363 ~s~------mik~~~~~P~~R~~~I~~~~~~l~-~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g 435 (861)
T 4f3t_A 363 TST------MIRATARSAPDRQEEISKLMRSAS-FNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQG 435 (861)
T ss_dssp HHH------HHHHHCCCHHHHHHHHHHHHHHHC-GGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTT
T ss_pred HHH------HHHHHccCHHHHHHHHHHHHHHhc-CCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCC
Confidence 874 556788999999999999999987 3345799999999999999999999999999999764322357789
Q ss_pred CCcccccc-ccccCCCCCeEEEEEeCC----ChHHHHHHHHHHHHhhcccceeccC-CeE--------------------
Q psy2224 349 NWTTPTRS-SVFRAPNLERWCVLTTGF----MMADTENFLQLINKAAQGMRFKVNR-PNV-------------------- 402 (504)
Q Consensus 349 ~W~~~~~~-~~~~~~~~~~w~vv~~~~----~~~~~~~f~~~l~~~~~~~G~~i~~-P~~-------------------- 402 (504)
+|+ +++ +|++++++++|++++++. +.+.++.|++.|.+.|+.+||.+.. |..
T Consensus 436 ~W~--~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~ 513 (861)
T 4f3t_A 436 VWD--MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNT 513 (861)
T ss_dssp BCC--CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHH
T ss_pred cee--ccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecCchHHHHHHHHHHHhh
Confidence 999 899 999999999999999752 3567999999999999999999964 422
Q ss_pred ------------------------------EEecccccC----CchhHHHHHHHHHHhhhCCCceeeec---C---CCCe
Q psy2224 403 ------------------------------IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSVAV---P---LKGL 442 (504)
Q Consensus 403 ------------------------------V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l~~---p---~~~t 442 (504)
|+|||+..+ ..+|++.||+||||+||||+||.+.. | ..+|
T Consensus 514 ~~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~~~~~~~~~~t 593 (861)
T 4f3t_A 514 YAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPV 593 (861)
T ss_dssp STTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECSTTSCGGGGSCE
T ss_pred cCCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceeccccccccccCCce
Confidence 788887532 46899999999999999999998852 2 3799
Q ss_pred EEEEEEEeeCCCC--CCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhhhh
Q psy2224 443 MVLGFDVTHDSDL--KGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 443 miiG~DV~Hp~~~--~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~~~ 503 (504)
||||+||+||+++ +.|||||||||+|.++++|++.+++|.+++|+|++|++|+.++|++|+
T Consensus 594 miiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~L~~~~ 656 (861)
T 4f3t_A 594 IFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFY 656 (861)
T ss_dssp EEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTTHHHHHHHHHHHHH
T ss_pred EEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999986 579999999999999999999999999999999999999999999986
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=5.9e-78 Score=665.18 Aligned_cols=484 Identities=17% Similarity=0.219 Sum_probs=363.0
Q ss_pred cceEEEEEEecCCCCC--------------hhHHHHHHHHh-hh-----ccc-ceEeec-eeeecccccCC-----ceeE
Q psy2224 4 WTLNLYRIDFNPPEDI--------------MGVKRGLLRDH-KD-----KIG-AYVFDG-TMMFTPNTIIG-----KEMK 56 (504)
Q Consensus 4 ~~~y~Y~V~i~p~~~~--------------~~~~~~i~~~~-~~-----~~~-~~~~Dg-~~lys~~~l~~-----~~~~ 56 (504)
..||+|+|+|.|+... ++.+++|+..+ .+ .|+ ..+||| ++|||..+|++ ..++
T Consensus 67 ~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ii~~ll~e~~~~~~~~~~ia~d~~~~L~s~~~L~~~~l~~~~~~ 146 (1046)
T 4f1n_A 67 AFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDGCWE 146 (1046)
T ss_dssp CEEEEEEEEEC-----------------CCHHHHHHHHHHHHHSCTTTGGGTTSEEECSSSEEEESSCGGGSTTCTTCCC
T ss_pred ceEEEEEEEEcccccccccccccCcccccchhHHHHHHHHHHHhcchhhhcCCceeecCccceEECCcCCccccCCCceE
Confidence 4799999999986432 45566776653 22 244 899999 99999999982 2222
Q ss_pred Eeee------------------------cCCCceEEEEEEEEEeeccCC------------------hhhHHHHHHHHHh
Q psy2224 57 LMSK------------------------KRDETPVELTIRHVRVLEYGD------------------AQYTQLFNILIRQ 94 (504)
Q Consensus 57 ~~~~------------------------~~~~~~~~v~i~~~~~~~~~~------------------~~~~q~lniil~~ 94 (504)
+... ..+...|+|+|++++++++++ .+.+++|+++|.+
T Consensus 147 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~ 226 (1046)
T 4f1n_A 147 VSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGA 226 (1046)
T ss_dssp -------------------------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHH
T ss_pred EeccccccccCCcccccccccccccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhh
Confidence 2221 134567999999999998864 3568999999999
Q ss_pred hhhhc-C-ceeccc-cccCCCC---CCcCCCCceeEecceeeEEeccCCeeEEEEeccccccch----------------
Q psy2224 95 TLRAL-D-LKLLGR-NYFDPAA---KEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRK---------------- 152 (504)
Q Consensus 95 ~~~~~-~-~~~~Gr-~ff~~~~---~~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~---------------- 152 (504)
.+.+. + ..++|+ +||.... ..++ ++|+|+|+||++|||++.|+++||||+++++|+.
T Consensus 227 ~~~~~~~~i~~vg~nkFF~~~~~~~~~~L-g~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~ 305 (1046)
T 4f1n_A 227 KFMSTDDLIFQVQGNKFFIFNNFAKAIPF-QIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEK 305 (1046)
T ss_dssp HHHCSSSCEEEETTTEEEECSTTCCEEEC-SSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTT
T ss_pred hhhhcCCceEEcCCcccccCCCCCccccC-CCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCccccccccccc
Confidence 88654 2 367775 5763321 2445 8899999999999999999999999999999874
Q ss_pred --hhHHHHHHHHhcC--------------h---hhHH-------HHHHHhhcccEEEEeeCC---------------eEE
Q psy2224 153 --ETVLDAWEQCRND--------------K---YFYY-------RKFEAQMTNSIVLTKYNN---------------KTY 191 (504)
Q Consensus 153 --~~ll~~i~~~~~~--------------~---~~~~-------~~~~~~L~gl~V~~~y~~---------------r~~ 191 (504)
.+|+|++.++.+. . ...+ .+++++|+|++|.++|.+ +.+
T Consensus 306 ~p~~lid~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k 385 (1046)
T 4f1n_A 306 EQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSK 385 (1046)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCE
T ss_pred CCccHHHHHHHHhccccccccccccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccce
Confidence 6999998887530 0 1122 679999999999999953 368
Q ss_pred EEeccccCCCCCcccccCC---------------ccccHHHHHHHhcCccccCCCCceEEeecccccccCCCcceEEecc
Q psy2224 192 RVDDIQYDVTPCSTFPMKG---------------ENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVP 256 (504)
Q Consensus 192 rI~~i~~~~~~~~~F~~~~---------------~~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~ 256 (504)
+|.+|+...+...+|..++ +++||+|||+++||++|+||++|||++|++ .+|||+
T Consensus 386 ~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~----------~~ylPm 455 (1046)
T 4f1n_A 386 GIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK----------NDVVPP 455 (1046)
T ss_dssp ECCEECSSCSSSCC-----------------------CHHHHHHHHSCCCCSCTTSCCEECSTT----------TCEECG
T ss_pred EEeeccCCCCCceEEeccCCcccccccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCC----------Cccccc
Confidence 9999997767778897642 379999999999999999999999999754 279999
Q ss_pred cccccc-CCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHH-hc---ChHHHHHhcccceEeecceeEEEEEEeCCC
Q psy2224 257 ELCYLT-GLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKR-IE---NSEAKEVLKRWELALDTNLARVQGHILPPD 331 (504)
Q Consensus 257 Elc~i~-gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~-l~---~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P 331 (504)
|||.|+ |+.-..+-+. ..+|+++|+.+|.+|.+.|.+.... ++ +...++.|++|| +|+++|++|+|||||||
T Consensus 456 ElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP 532 (1046)
T 4f1n_A 456 ECLTIVPGQKLKGQIFD--TKTYIDFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAP 532 (1046)
T ss_dssp GGCCBCTTCBCCSCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCC
T ss_pred ceEEecCCccccccccc--HHHHHHHHccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCC
Confidence 999999 4322111111 1478889999999999999987533 22 224578899999 99999999999999999
Q ss_pred eeecCCCCCC--------CCCCCCCCCcccccc-ccccCCC-CCeEEEEEe-CC-------ChHHHHHHHHHHHHhhccc
Q psy2224 332 SIIFSDPLKP--------FPVGPDANWTTPTRS-SVFRAPN-LERWCVLTT-GF-------MMADTENFLQLINKAAQGM 393 (504)
Q Consensus 332 ~i~~~~~~~~--------~~~~~~g~W~~~~~~-~~~~~~~-~~~w~vv~~-~~-------~~~~~~~f~~~l~~~~~~~ 393 (504)
.|.|+++... ...+.+|.|| |++ +|++++. +..|.+++. .. +.+++..|++.|.+.|+.+
T Consensus 533 ~L~Yg~~~~~~~~~p~~~~~~p~~G~Wn--m~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 610 (1046)
T 4f1n_A 533 VVQFKESTFEYKDKSYGTKHEESKGNWN--MKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQL 610 (1046)
T ss_dssp CEECSSCEECCCCCCSSSSGGGGTTBCC--CTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred eEeecCCcccccccccccccCccCCccc--CCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence 9999876421 1235679999 899 9999874 566766554 22 1357899999999999999
Q ss_pred ceeccC---Ce-------------------------------------------E-------------------------
Q psy2224 394 RFKVNR---PN-------------------------------------------V------------------------- 402 (504)
Q Consensus 394 G~~i~~---P~-------------------------------------------~------------------------- 402 (504)
||.+.. |. .
T Consensus 611 Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvl~Ilp~ 690 (1046)
T 4f1n_A 611 GVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENIPSNTYILYVLRR 690 (1046)
T ss_dssp TCCEECCSCCEEEESCCSCBC----------------------------CCCBCCTTHHHHHHHHHTCCTTEEEEEEESS
T ss_pred CCccCCCCCCccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHhcCCCCEEEEEecC
Confidence 999864 20 0
Q ss_pred -------------------EEeccccc----CCchhHHHHHHHHHHhhhCCCceeeecC----------CCCeEEEEEEE
Q psy2224 403 -------------------IVKKNLAS----KGALTIATKVAIQLCCKIGGAPWSVAVP----------LKGLMVLGFDV 449 (504)
Q Consensus 403 -------------------V~~q~~~k----~~~~~~~~ni~lKiN~KlGG~n~~l~~p----------~~~tmiiG~DV 449 (504)
|+|||+.. +...||++||+||||+||||+||.|+.| ..+|||||+||
T Consensus 691 ~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~l~~~~~~~ptMiiG~DV 770 (1046)
T 4f1n_A 691 GNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENNKLLIDKESNLPILVLGSDV 770 (1046)
T ss_dssp SCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTGGGGGEETTTTEECEEEEEEE
T ss_pred CCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHHHHHhcCCeeeeccccccccccccccCCceEEEeeee
Confidence 67787742 2467899999999999999999999764 13699999999
Q ss_pred eeCCCCCCceEEEEEEeeCCCCceeeeEeeecCC-CcchHHhHHHHHHHHHhhhh
Q psy2224 450 THDSDLKGSSYGALVASIDPQMSSWFSRVSPHRS-GNELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 450 ~Hp~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~-~~E~i~~l~~~~~~~L~~~~ 503 (504)
+||++++.+||||||||+|.++++|++.+++|.+ ++|+|++|++||.++|+.|+
T Consensus 771 tH~p~~~~~SiaavVaS~d~~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~ 825 (1046)
T 4f1n_A 771 THYPEKDQNSIASLVGSYDDKFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQ 825 (1046)
T ss_dssp ECCSSTTCEEEEEEEECCSSSCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHH
T ss_pred ecCCCCCCCeeeEEEEEECCCcCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHH
Confidence 9955455679999999999999999999999998 99999999999999999997
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.3e-63 Score=533.27 Aligned_cols=461 Identities=15% Similarity=0.192 Sum_probs=347.1
Q ss_pred CCCcceEEEEEEecCCCCChhHHHHHHHHhhhcccceEeecee--eecccccCCceeEEeeecCCCceEEEEEEEEEeec
Q psy2224 1 MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIGAYVFDGTM--MFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLE 78 (504)
Q Consensus 1 ~p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~~~~~~~~~Dg~~--lys~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~~~ 78 (504)
.|+ .+|+|+|+|+|+++.+ +|..++..|++.+|.++|||+. ||++++|+ .++..+.++++.++++.
T Consensus 18 ~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~~~~~g~~~fdg~~~~l~~~~~l~----------~~~~~~~~~~~~~~~~~ 85 (771)
T 1u04_A 18 IPD-KIYVYRLFNDPEEELQ-KEGYSIYRLAYENVGIVIDPENLIIATTKELE----------YEGEFIPEGEISFSELR 85 (771)
T ss_dssp SCS-CEEEEEC-------------CCHHHHHHHTTEEEEETTTTEEEESSCCC----------CSSCCEEEEEECGGGSC
T ss_pred CCC-eeEEEEeecCChHHHH-HHHHHHHHHHhhcCcEEecCcceeeeccceec----------cCCCeEEEEEEEcceec
Confidence 377 9999999999999988 8888999999999999999976 99999997 24667899999998887
Q ss_pred cCChhhHHHHHHHHHhhhhhcC-----ceeccccccCCCCCCcCCCCceeEecceeeEEeccCCeeEEEEeccccccchh
Q psy2224 79 YGDAQYTQLFNILIRQTLRALD-----LKLLGRNYFDPAAKEDIPQYRLEVWPGWDTSMRQMENDIMLCVELSHKVLRKE 153 (504)
Q Consensus 79 ~~~~~~~q~lniil~~~~~~~~-----~~~~Gr~ff~~~~~~~i~~~glei~~G~~~svr~~~~~l~lniD~~~~~f~~~ 153 (504)
+|++|+++|+++...+ +..+||+||++ ..+ +.+++|+|+.+||+..+++++|++|++|++.+.+
T Consensus 86 ------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~~---~~~--~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r~~ 154 (771)
T 1u04_A 86 ------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKP---KTF--GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMK 154 (771)
T ss_dssp ------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCC---EEE--TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEESS
T ss_pred ------HHHHHHHHHHHHHHcccchHHHHHHhhhcCCC---ccc--cccEEEECceeeEEecCCceEEEEEeeeeEeehh
Confidence 9999999999998877 88999999988 344 3588999999999999999999999999999999
Q ss_pred hHHHHHHHHhcChhhHHHHHHHhhcccEEEEe--------e--CCeEEEEeccccCCCCCc--cc---ccCC--ccccHH
Q psy2224 154 TVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTK--------Y--NNKTYRVDDIQYDVTPCS--TF---PMKG--ENVSYI 216 (504)
Q Consensus 154 ~ll~~i~~~~~~~~~~~~~~~~~L~gl~V~~~--------y--~~r~~rI~~i~~~~~~~~--~F---~~~~--~~isv~ 216 (504)
||+|+|.++. +.++.+.....|..|.+. | |+++|++++ +|+..|.+ +| ..++ +.+++.
T Consensus 155 t~~d~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ 229 (771)
T 1u04_A 155 TLWELVNKDP----KELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAK 229 (771)
T ss_dssp CHHHHTTTCH----HHHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCCCCCcchh
Confidence 9999998774 356667778889988888 8 889999998 99888876 66 6554 677888
Q ss_pred HHHHHhcCccccCCCCceEEeecccccccCCCcceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHH
Q psy2224 217 DYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVF 296 (504)
Q Consensus 217 eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~ 296 (504)
+||+++||+ ++++||++++++++| .++++++.+||+||||.++| +.++.|+++||+++.+|+++|++|.+.+.++
T Consensus 230 ~~y~~~y~i--~d~~QPllvs~~~~~-~~~~~~~~i~LiPELc~~TG--~~~~~~~~~MK~la~~trl~P~~R~~~l~~~ 304 (771)
T 1u04_A 230 LEFYRKFGQ--VDLKQPAILAKFASK-IKKNKNYKIYLLPQLVVPTY--NAEQLESDVAKEILEYTKLMPEERKELLENI 304 (771)
T ss_dssp HHHHHHHCS--CCTTSCEEEEEESCC------CCCEEECTTTEEEEE--EGGGC----CCHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHhcCc--CcCCCCeEEecchhh-ccCCCCceeeechHhhhhcC--chhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888899995 999999999988765 45566788999999999999 5566677899999999999999999999999
Q ss_pred HHHh-----c-ChHHHHHhcccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCC-------
Q psy2224 297 RKRI-----E-NSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAP------- 362 (504)
Q Consensus 297 ~~~l-----~-~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~------- 362 (504)
.+++ . +++..+.|+.|| .++.. +.|.+++..+-.+..++. ..+..++|.+.+++ +++.+.
T Consensus 305 ~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~~----~~~~~adW~~~~~~~~~~~~~~~p~~l~ 378 (771)
T 1u04_A 305 LAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLNV----QKSQLLLWTNYSRKYPVILPYEVPEKFR 378 (771)
T ss_dssp HHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC------------CGGGGSCCCCCCCCSBCCTHHH
T ss_pred HHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecCc----CCCccCCcchhhCCCcceecccchhhhh
Confidence 9999 6 666677888888 57766 777766666544555441 23456999888888 876544
Q ss_pred ---CCCeEEEEEeCCChHHHHHHH---------HHHHHhhc-----------ccceeccCC------e------------
Q psy2224 363 ---NLERWCVLTTGFMMADTENFL---------QLINKAAQ-----------GMRFKVNRP------N------------ 401 (504)
Q Consensus 363 ---~~~~w~vv~~~~~~~~~~~f~---------~~l~~~~~-----------~~G~~i~~P------~------------ 401 (504)
+++.|++++. +..+.+.+|+ +.|.+.++ .+|+.++.| .
T Consensus 379 ~~~~i~~wil~~~-~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i 457 (771)
T 1u04_A 379 KIREIPMFIILDS-GLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGI 457 (771)
T ss_dssp HCCCCCEEEEEET-TSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHH
T ss_pred cccccceEEEEeC-CchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHH
Confidence 3445666666 4467778887 44544442 223333321 0
Q ss_pred -----------------E-------------------------EEecccccC----C----c-----hhHHHHHHHHHHh
Q psy2224 402 -----------------V-------------------------IVKKNLASK----G----A-----LTIATKVAIQLCC 426 (504)
Q Consensus 402 -----------------~-------------------------V~~q~~~k~----~----~-----~~~~~ni~lKiN~ 426 (504)
. |++||+... . . .+++.||++|||+
T Consensus 458 ~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~ 537 (771)
T 1u04_A 458 IEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLFNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLS 537 (771)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHHHHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHHhcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHH
Confidence 0 778876421 1 1 7799999999999
Q ss_pred hhCCCceeeecCCCCeEEEEEEEeeCCCC-CCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhhhh
Q psy2224 427 KIGGAPWSVAVPLKGLMVLGFDVTHDSDL-KGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 427 KlGG~n~~l~~p~~~tmiiG~DV~Hp~~~-~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~~~ 503 (504)
||||+||.|+.|..+|||||+||+||+++ +.+|++|.|+|.|.++.+|.+....|.+++| ++ ++.++.++|++|+
T Consensus 538 KLGG~pW~L~~p~~~tmiIGiDV~H~~~~~~svs~~A~V~s~dg~~~~~~s~~~~~~~~E~-i~-l~~~l~~~L~~y~ 613 (771)
T 1u04_A 538 KLGVKYYVLDYRFNYDYIIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGES-VD-MNEFFKEMVDKFK 613 (771)
T ss_dssp HTTCBCCEESCCCSSSEEEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSS-CC-HHHHHHHHHHHHH
T ss_pred HhCCcceeecCCCCCEEEEEEEEEcCCCCCCceEEEEEEECCCCCEEEEEEEEeecCCccE-Ec-HHHHHHHHHHHHH
Confidence 99999999999999999999999999644 4578888888888888888876665666554 44 8999999999996
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=9.5e-59 Score=499.32 Aligned_cols=420 Identities=15% Similarity=0.177 Sum_probs=319.3
Q ss_pred cceEeec-eeeecccccCCceeEEeeecCCCceEEEEEEEEEeec----cCChhhHHHHHHHHHhhhhhcCceecccccc
Q psy2224 35 GAYVFDG-TMMFTPNTIIGKEMKLMSKKRDETPVELTIRHVRVLE----YGDAQYTQLFNILIRQTLRALDLKLLGRNYF 109 (504)
Q Consensus 35 ~~~~~Dg-~~lys~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~~~----~~~~~~~q~lniil~~~~~~~~~~~~Gr~ff 109 (504)
|...|-. .-.|...+.+....-+.. .++. .|+|++++++. .++++++|+++.++++. .+++.++||+||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~igr~~~ 120 (706)
T 1yvu_A 47 GLPTFRREDEFWCAGKVEKDTLYLTL--SNGE--IVELKRVGEEEFRGFQNERECQELFRDFLTKT--KVKDKFISDFYK 120 (706)
T ss_dssp CSCEEEETTEEEESSCCTTCCCEEEE--CSSS--CEEEEECCCEECCCCSCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCccccccccceeccccccceEEEEc--CCCC--EEEEEEEEEeeccCCCCCHHHHHHHHHHHHHc--CChHhhhCcccc
Confidence 4555666 667777777655433332 2343 56699999999 88999999999998885 455668999999
Q ss_pred CCCCCCcCC--CCceeEecceeeEEeccC-CeeEEEEeccccccchhhHHHHHHHHhcChhhHHHHHHHhhcccEEEEee
Q psy2224 110 DPAAKEDIP--QYRLEVWPGWDTSMRQME-NDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKY 186 (504)
Q Consensus 110 ~~~~~~~i~--~~glei~~G~~~svr~~~-~~l~lniD~~~~~f~~~~ll~~i~~~~~~~~~~~~~~~~~L~gl~V~~~y 186 (504)
++..+..++ ++++|+|+||.+||+..+ ++++||+|++|++.+++||+|+|.+ .+.. ...+..+|
T Consensus 121 ~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKvlr~~Tvld~l~~-~~~~------------~~~~~~~y 187 (706)
T 1yvu_A 121 KFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRIQPFETLQTLLER-NDFN------------PKRIRVKP 187 (706)
T ss_dssp HHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEEEESSCHHHHHHH-CCCC------------CTTCEEEE
T ss_pred CccccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeeecccchHHHHHHH-hhhc------------chhHHhhc
Confidence 999888774 677999999999999998 9999999999999999999999998 4311 13456789
Q ss_pred CCeEE--EEecc-ccCCCCCcccccCCccccHHHHHHHhcCcc--------ccCCCCceEEeecccccccCCCcceEEec
Q psy2224 187 NNKTY--RVDDI-QYDVTPCSTFPMKGENVSYIDYYQKKYNET--------IRNRNQPMIVHKSKLRELRAGQSEIIYLV 255 (504)
Q Consensus 187 ~~r~~--rI~~i-~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~--------L~~p~~Plv~~~~~~~~~~~~~~~~~~lP 255 (504)
++++| ||++| +|+.+|.++|. +|..+| ||+++|++. .+.+.+|+++.+.+. ....+++
T Consensus 188 ~n~ty~~riddi~~~~~~P~~~f~-~g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~~~-------~p~~lL~ 256 (706)
T 1yvu_A 188 IGIDFVGRVQDVFKAKEKGEEFFR-LCMERS---THKSSKKAWEELLKNRELREKAFLVVLEKGYT-------YPATILK 256 (706)
T ss_dssp TTCCCCEEEEEEEESTTSCHHHHH-HHHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTSCE-------EEGGGEE
T ss_pred ccceeccccCcccccCCCcceEec-CCCCcc---eEecccCcchhhhhccccccCCceEEeccCCC-------CCceeec
Confidence 88999 99998 99999999997 355688 999988776 444555555543210 1145566
Q ss_pred cccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcChHHHHHhcccceEeecceeEEEEEEeCCCeeec
Q psy2224 256 PELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIF 335 (504)
Q Consensus 256 ~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~~~~~~~~l~~~Gl~i~~~~~~v~~rvL~~P~i~~ 335 (504)
| ||.++||+++|++ +++++|+.+|++|.+.|.++++.+ ++.|++|||+|+++|+.|+||+||+|+|.+
T Consensus 257 p-lc~~t~Ltd~q~~------~mik~t~~~P~~R~~~i~~~~~~~-----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~ 324 (706)
T 1yvu_A 257 P-VLTYENLEDEERN------EVADIVRMEPGKRLNLIRYILRRY-----VKALRDYGWYISPEEERAKGKLNFKDTVLD 324 (706)
T ss_dssp E-CCCCC------HH------HHTSTTSCCHHHHHHHHHHHHHHH-----HHHHHTTTEEECSSCEECCEECCCCCCEEC
T ss_pred c-ccccCCCCHHHHH------HHHHHHccCHHHHHHHHHHHHHHH-----HHHHHHcCCEECCceeecccEEcCCceeec
Confidence 6 9999999999884 789999999999999999998764 478999999999999999999999999985
Q ss_pred CCCC-CCCCCCCCCCCccccccccccCCCCCe---EEEEEeCCChHHHHHHHHHHHHhhcccceeccCCeE---------
Q psy2224 336 SDPL-KPFPVGPDANWTTPTRSSVFRAPNLER---WCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPNV--------- 402 (504)
Q Consensus 336 ~~~~-~~~~~~~~g~W~~~~~~~~~~~~~~~~---w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i~~P~~--------- 402 (504)
+.+. .....+..|.|. ++++|+.++.++. |++++..++. .++.|++.|.+.|+.+||.++.|..
T Consensus 325 ~~g~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~lW~~i~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~ 401 (706)
T 1yvu_A 325 AKGKNTKVITNLRKFLE--LCRPFVKKDVLSVEIISVSVYKKLEW-RKEEFLKELINFLKNKGIKLKIKGKSLILAQTRE 401 (706)
T ss_dssp SSCCEECCSSCCHHHHH--HCCCCCSCSEEEEEEEEEEC-----C-HHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTT
T ss_pred CCCCcceeccCCccccc--ccCceecccccccceEEEEEecchhH-HHHHHHHHHHHHHHHcCceecCCccccccchhHH
Confidence 4332 112233445565 5568888888888 8666655443 7899999999999999999865421
Q ss_pred -------------------------------------------------EEeccccc-----CCchhHHHHHHHHHHhhh
Q psy2224 403 -------------------------------------------------IVKKNLAS-----KGALTIATKVAIQLCCKI 428 (504)
Q Consensus 403 -------------------------------------------------V~~q~~~k-----~~~~~~~~ni~lKiN~Kl 428 (504)
|++||+.. .+..++++||++|||+||
T Consensus 402 ~~~~~l~~~~~~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KL 481 (706)
T 1yvu_A 402 EAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKT 481 (706)
T ss_dssp HHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCcEEEEEECCccccccccCccHHHHHHHHHhcCCCceEEEehhhccccchHHHHHHHHHHHHHHh
Confidence 45566542 235799999999999999
Q ss_pred CCCceeeecC-CCCeEEEEEEEeeCCCCC-CceEEEEEEeeCCC--CceeeeEeeecCCCcchHHhHHHHHHHHHh
Q psy2224 429 GGAPWSVAVP-LKGLMVLGFDVTHDSDLK-GSSYGALVASIDPQ--MSSWFSRVSPHRSGNELSNDIAVSVVHALH 500 (504)
Q Consensus 429 GG~n~~l~~p-~~~tmiiG~DV~Hp~~~~-~pSi~~~vaS~d~~--~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~ 500 (504)
||+||.|+.| ..+|||||+||+||+.++ .||++|+|||+|.. +.+|.+....| .++|++++|..++.++++
T Consensus 482 GG~nw~L~~~~~~~tmiIGiDVsH~~~~~~~pSv~g~vas~d~~g~~~~~~~~~~~q-~~~ei~~~l~~~~l~~~~ 556 (706)
T 1yvu_A 482 GNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPA-FGEKLTEKAIGDVFSLLE 556 (706)
T ss_dssp TCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECS-CTTHHHHHHHHHHHHHHH
T ss_pred CCeeeeeccCCCCceEEEEEEEeccCCCCCCceEEEEEEEEcCCCCEEEEEEEeccc-ccchHHHHHHHHHHHHHH
Confidence 9999999887 468999999999998654 49999999999954 57788776644 588988876555544443
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=2.5e-45 Score=388.08 Aligned_cols=448 Identities=14% Similarity=0.094 Sum_probs=333.2
Q ss_pred CCCcceEEEEEEecCCCCChhHHHHHHHHhhhccc-ceEeeceeeecccccCCc-eeEEeeec-CCCceEEEEEEEEEee
Q psy2224 1 MPTWTLNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGK-EMKLMSKK-RDETPVELTIRHVRVL 77 (504)
Q Consensus 1 ~p~~~~y~Y~V~i~p~~~~~~~~~~i~~~~~~~~~-~~~~Dg~~lys~~~l~~~-~~~~~~~~-~~~~~~~v~i~~~~~~ 77 (504)
++|...|.|+|.+.|+.+.....+ ++.+..--.| ..+-=|+.|.|.++ |+. ..|-.... .....+++.-.=.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (685)
T 3ho1_A 21 PEELRPWRLEVVLDPPPGREEVYP-LLAQVARRAGGVTVRMGDGLASWSP-PEVLVLEGTLARMGQTYAYRLYPKGRRPL 98 (685)
T ss_dssp TTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHHTCSSEEEETTEEEESSC-TTTSCCEEEEECSSCEEEEEEEEEEECCC
T ss_pred hhhCceeEEEEecCCCCCcchHHH-HHHHHHHHhCCeEEeecCceecccC-chhhhccchhccccCCcceeeeecccccC
Confidence 468899999999999876555544 4444443456 44555688888877 443 12322211 1223355544445568
Q ss_pred ccCChhhHHHHHHHHHhhhh----hcCceeccccc-cCCCCCCcCCCCceeEecceeeEEeccC-CeeEEEEeccccccc
Q psy2224 78 EYGDAQYTQLFNILIRQTLR----ALDLKLLGRNY-FDPAAKEDIPQYRLEVWPGWDTSMRQME-NDIMLCVELSHKVLR 151 (504)
Q Consensus 78 ~~~~~~~~q~lniil~~~~~----~~~~~~~Gr~f-f~~~~~~~i~~~glei~~G~~~svr~~~-~~l~lniD~~~~~f~ 151 (504)
++.++.--++|+.+-|..+. ..+-..++..+ +..+. ..+.|.|+.+|+...|.+.. |++.|.||..|.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~~ 175 (685)
T 3ho1_A 99 DPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREH---ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILC 175 (685)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHTCSSSEEETTEEEEEEE---EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhceEEccEEEEeecC---CCCCceEEecceEEEEEECCCCcEEEEEeeheeecC
Confidence 88888888888887777542 22212232222 33222 23889999999999999986 899999999999999
Q ss_pred hhhHHHHHHHHhcChhhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCCccccHHHHHHHhcCccccCCC
Q psy2224 152 KETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRN 231 (504)
Q Consensus 152 ~~~ll~~i~~~~~~~~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~L~~p~ 231 (504)
+.++.+++++.. . |. ..|.++|+.++|.+.+|+ +.+|.+.|-.. .+|++|||+++|.+ ++-+
T Consensus 176 ~~~~~~~l~~~~-----------~-~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~~--~~s~~~y~~~k~~~--~~~~ 237 (685)
T 3ho1_A 176 EMSLEAWLAQGH-----------P-LP-KRVRNAYDRRTWELLRLG-EEDPKELPLPG--GLSLLDYHASKGRL--QGRE 237 (685)
T ss_dssp CSCHHHHHHHSC-----------C-CC-SEEEESSSCCEECCCEEE-CCCTTCC--------CSTTTTTTTSTT--TTSC
T ss_pred hhhHHHHHHhCC-----------C-cc-HHHhhhcccceEEEeecc-cCCchheecCC--CccHHHHHhhcccc--cccC
Confidence 999999998853 2 55 899999999999999999 78999998755 69999999999888 8899
Q ss_pred CceEEeecccccccCC-CcceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcChHHHHHhc
Q psy2224 232 QPMIVHKSKLRELRAG-QSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVFRKRIENSEAKEVLK 310 (504)
Q Consensus 232 ~Plv~~~~~~~~~~~~-~~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~~~~l~~~~~~~~l~ 310 (504)
+|+|+...+.++.+.. ....++|.|||| +.+|++.+++ .+|+++|.+|++.+.++++.+ ++
T Consensus 238 ~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l~~~~~~---------~~trlsP~~R~~~l~~~~~~i--------~~ 299 (685)
T 3ho1_A 238 GGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDLHEEEGS---------LALSLPWEERRRRTREIASWI--------GR 299 (685)
T ss_dssp CCSEEEECSCC---CCEEEETTSEEEECC-TTTTSSCSSC---------CCCCCCHHHHHHHHHHHHHHH--------HH
T ss_pred CceEEEEeccccCCCcceeeeeeechHhH-HHHHhhhhhh---------ccccCCHHHHHHHHHHHHHHH--------HH
Confidence 9999876654421111 134578999999 9999998764 478899999999999997664 45
Q ss_pred ccceEeecceeEEEEEEeCCCeeecCCCCCCCCCCCCCCCcccccc-ccccCCCCCeEEEEEeCCChHHHHHHHHHHHHh
Q psy2224 311 RWELALDTNLARVQGHILPPDSIIFSDPLKPFPVGPDANWTTPTRS-SVFRAPNLERWCVLTTGFMMADTENFLQLINKA 389 (504)
Q Consensus 311 ~~Gl~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~g~W~~~~~~-~~~~~~~~~~w~vv~~~~~~~~~~~f~~~l~~~ 389 (504)
.|||+ +++|++|+||+||||+| +++.. . .+.|+ +++ +|+.+++. .|++++++.+.+.+++|++.|.+.
T Consensus 300 ~~Gl~-~~~~i~v~gRvLppp~I-~g~~~--~----~~~~d--~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~~v 368 (685)
T 3ho1_A 300 RLGLG-TPEAVRAQAYRLSIPKL-MGRRA--V----SKPAD--ALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALLRA 368 (685)
T ss_dssp TTCSC-CCEEEEEEEEECCCCCE-ESSSB--C----SSGGG--HHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHHHH
T ss_pred hcCCC-CCCcceEEEEEcCHHHh-cCCCC--c----CCchh--hccCcceeccCc-eEEEEeccCchHHHHHHHHHHHHH
Confidence 79999 99999999999999999 76543 1 23455 566 78887765 799999876667788999999999
Q ss_pred hcccceeccCCeE------------------------------------------------EEecccccC---CchhHHH
Q psy2224 390 AQGMRFKVNRPNV------------------------------------------------IVKKNLASK---GALTIAT 418 (504)
Q Consensus 390 ~~~~G~~i~~P~~------------------------------------------------V~~q~~~k~---~~~~~~~ 418 (504)
|+.+||+++.|.. |+|||+.+. +..++++
T Consensus 369 a~~~G~~i~~~~~~~~~~d~~~~~~~l~~~~~~~~qlvvvIlp~~~~~~y~~IKk~~~~~GIpTQcV~~tl~k~~~~ia~ 448 (685)
T 3ho1_A 369 FGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWE 448 (685)
T ss_dssp HHSSSSCEEEEECCCCGGGTHHHHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHHHHTTCCEEEEESSCCTTCHHHHH
T ss_pred HHhCCcEeccceeecCCCchHHHHHHHHHhhhcCCCEEEEEECCCCccHHHHHHHHHhcCCCccEEEecccccccHhHHH
Confidence 9999999875331 788988722 4678999
Q ss_pred HHHHHHHhhhCCCceeeecCCCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCceee-eEeeecCCCcchHHhHHHHHHH
Q psy2224 419 KVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWF-SRVSPHRSGNELSNDIAVSVVH 497 (504)
Q Consensus 419 ni~lKiN~KlGG~n~~l~~p~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~~y~-~~~~~q~~~~E~i~~l~~~~~~ 497 (504)
||++|||+||||+||.|+.|..++||||+||+||+ ..+++|++++++.+.+.+. +..+.|...++.+++|.+||.+
T Consensus 449 NIaLkINaKLGG~pW~L~~P~~~tmiIGiDVsH~~---~~~~~~~aav~~~dg~~~~~~~~~~Q~~e~l~~~~L~~~l~e 525 (685)
T 3ho1_A 449 NALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRE---SFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEE 525 (685)
T ss_dssp HHHHHHHHHHTCCCCEECSCCSCSEEEEEEEEETT---EEEEEEEEEEECC--CCCEEECCCCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeEEecCCCCCeEEEEEEEEcCC---CCccceEEEEEECCCCEEEeEEEEccCCcEecHHHHHHHHHH
Confidence 99999999999999999999999999999999997 3467776666655443333 3345565555556789999999
Q ss_pred HHhhhh
Q psy2224 498 ALHKYR 503 (504)
Q Consensus 498 ~L~~~~ 503 (504)
+|++|+
T Consensus 526 aL~~Y~ 531 (685)
T 3ho1_A 526 TLWAFR 531 (685)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 6
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=100.00 E-value=2.1e-33 Score=244.17 Aligned_cols=143 Identities=31% Similarity=0.689 Sum_probs=97.5
Q ss_pred chhhHHHHHHHHhc-ChhhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCC-ccccHHHHHHHhcCcccc
Q psy2224 151 RKETVLDAWEQCRN-DKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKG-ENVSYIDYYQKKYNETIR 228 (504)
Q Consensus 151 ~~~~ll~~i~~~~~-~~~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~-~~isv~eYf~~~Y~i~L~ 228 (504)
+.+||+|+|.++.+ +++.++.++.+.|+|+.|.+.|++++|+|++|+|+.+|.++|+..+ ..+||+|||+++||++|+
T Consensus 1 r~~tvld~m~~~~~~~~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~kY~i~I~ 80 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVK 80 (148)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHHHCCCCS
T ss_pred CcchHHHHHHHHHhhCcHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCCCcccHHHHHHHHcCCeec
Confidence 35799999999853 3467899999999999999999999999999999999999999865 579999999999999999
Q ss_pred CCCCceEEeecccccccCCC--cceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHH
Q psy2224 229 NRNQPMIVHKSKLRELRAGQ--SEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKF 293 (504)
Q Consensus 229 ~p~~Plv~~~~~~~~~~~~~--~~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i 293 (504)
||+||||+++.++++.++|. .+.+|||||||.++||+++|++|+++|++++.+|++.|.+|.+.+
T Consensus 81 ~~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltgLtd~~r~d~~~mk~l~~~tr~~P~~R~~~l 147 (148)
T 3qir_A 81 EEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTGIPEKMKKDFRAMKDLAQQINLSPKQHHSAL 147 (148)
T ss_dssp CTTCCEEEECCTTCCCC---CCSCCEEECGGGEECC-------------------------------
T ss_pred CCCCceEEeecccccCCCCCCccceeeecHHHhhhcCCCHHHHhhhHHHHHHHHHHCCCHHHHHHhh
Confidence 99999999998866544443 368999999999999999999999999999999999999999866
No 7
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.98 E-value=3.1e-33 Score=245.59 Aligned_cols=146 Identities=44% Similarity=0.709 Sum_probs=102.0
Q ss_pred chhhHHHHHHHHhcCh--hhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCccccc-CCccccHHHHHHHhcCccc
Q psy2224 151 RKETVLDAWEQCRNDK--YFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPM-KGENVSYIDYYQKKYNETI 227 (504)
Q Consensus 151 ~~~~ll~~i~~~~~~~--~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~-~~~~isv~eYf~~~Y~i~L 227 (504)
+++||+|+|.++.+.+ .+++.++.+.|+|++|.+.|+||+|+|++|+|+.+|.++|+. +|+.+||+|||+++||++|
T Consensus 1 r~~tvld~~~~~~~~~~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~Y~i~i 80 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEI 80 (150)
T ss_dssp CCCBHHHHHHHHHHHSCHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTTCCCCC
T ss_pred CCccHHHHHHHHHccccchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCCceeeHHHHHHHHcCCcc
Confidence 4679999999976422 457889999999999999999999999999999999999986 4568999999999999999
Q ss_pred cCCCCceEEeecccccccCCCc-ceEEeccccccccCCChhhhhchhhhHHHHHHhcCCHHHHHHHHHHH
Q psy2224 228 RNRNQPMIVHKSKLRELRAGQS-EIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFNVF 296 (504)
Q Consensus 228 ~~p~~Plv~~~~~~~~~~~~~~-~~~~lP~Elc~i~gl~~~~~~~~~~~k~~~~~~~~~P~~r~~~i~~~ 296 (504)
+||+||||+++.+++..+++.. +.+|||||||.++||+++|++|+++|++++++|+.+|.+|.+.|.+|
T Consensus 81 ~~~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~L~d~~rs~~~~mk~l~~~t~~~P~~R~~~i~~f 150 (150)
T 2xfm_A 81 TDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPEQRQREVGRL 150 (150)
T ss_dssp CCSSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECSTTC------------------------------
T ss_pred CCCCCCeEEecccccccccccccceEEecHHHhccCCCCHHHHhhHHHHHHHHHHHccCHHHHHHHHhcC
Confidence 9999999999987654444444 77999999999999999999999999999999999999999988764
No 8
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=99.96 E-value=8.5e-30 Score=258.06 Aligned_cols=150 Identities=18% Similarity=0.280 Sum_probs=130.2
Q ss_pred ccc-cccc-CCCCCeEEEEEeC--CChHHHHHHHHHHHHhhcccceeccCCeE---------------------------
Q psy2224 354 TRS-SVFR-APNLERWCVLTTG--FMMADTENFLQLINKAAQGMRFKVNRPNV--------------------------- 402 (504)
Q Consensus 354 ~~~-~~~~-~~~~~~w~vv~~~--~~~~~~~~f~~~l~~~~~~~G~~i~~P~~--------------------------- 402 (504)
+++ +|++ ++++++|+++++. ++.+.++.|++.|.+.|+.+||.++.|..
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQF 81 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHHHHHHHHHHHTCSE
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHhHHHHhhccCCCeE
Confidence 677 8999 6789999999984 45678999999999999999999976520
Q ss_pred -------------------------EEecccccC----Cchh--HHHHHHHHHHhhhCCCceeeecCC-----CCeEEEE
Q psy2224 403 -------------------------IVKKNLASK----GALT--IATKVAIQLCCKIGGAPWSVAVPL-----KGLMVLG 446 (504)
Q Consensus 403 -------------------------V~~q~~~k~----~~~~--~~~ni~lKiN~KlGG~n~~l~~p~-----~~tmiiG 446 (504)
|+|||+..+ ...+ |++||+||||+||||+||.|+.|. .+|||||
T Consensus 82 vl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~~~~~~~~~tmiiG 161 (388)
T 2yha_A 82 VVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVG 161 (388)
T ss_dssp EEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSCCHHHHTSCEEEEE
T ss_pred EEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEEEE
Confidence 778886531 3456 999999999999999999998643 6999999
Q ss_pred EEEeeCC---CC----CCceEEEEEEeeCCCCceeeeEeeecC-CCcchHHhHHHHHHHHHhhhh
Q psy2224 447 FDVTHDS---DL----KGSSYGALVASIDPQMSSWFSRVSPHR-SGNELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 447 ~DV~Hp~---~~----~~pSi~~~vaS~d~~~~~y~~~~~~q~-~~~E~i~~l~~~~~~~L~~~~ 503 (504)
+||+||+ ++ ..|||||+|||+|.++++|++.+++|. +++|+|++|++|+.++|+.|+
T Consensus 162 ~DV~H~~~~~~g~~~~~~pSiaavVaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~ 226 (388)
T 2yha_A 162 YDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWR 226 (388)
T ss_dssp EEEECSCCCSSSSCCTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCCCCcCCCCCEEEEEEEEcCCCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999998 55 479999999999999999999999999 999999999999999999996
No 9
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=99.96 E-value=5.2e-29 Score=255.57 Aligned_cols=151 Identities=18% Similarity=0.276 Sum_probs=130.4
Q ss_pred ccc-cccc-CCCCCeEEEEEeC--CChHHHHHHHHHHHHhhcccceeccCCeE---------------------------
Q psy2224 354 TRS-SVFR-APNLERWCVLTTG--FMMADTENFLQLINKAAQGMRFKVNRPNV--------------------------- 402 (504)
Q Consensus 354 ~~~-~~~~-~~~~~~w~vv~~~--~~~~~~~~f~~~l~~~~~~~G~~i~~P~~--------------------------- 402 (504)
+++ +|++ ++++++|+++++. ++.+.++.|++.|.+.|+.+||.++.|..
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAKVKELMSSHQF 81 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHHHHHHHHHHHTCSE
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHHHHHHhhccCCCcE
Confidence 577 8999 6789999999984 45678999999999999999999976520
Q ss_pred -------------------------EEecccccC----Cchh--HHHHHHHHHHhhhCCCceeeecCC-----CCeEEEE
Q psy2224 403 -------------------------IVKKNLASK----GALT--IATKVAIQLCCKIGGAPWSVAVPL-----KGLMVLG 446 (504)
Q Consensus 403 -------------------------V~~q~~~k~----~~~~--~~~ni~lKiN~KlGG~n~~l~~p~-----~~tmiiG 446 (504)
|++||+..+ ...+ +++||+||||+||||+||.|+.|. .+|||||
T Consensus 82 vl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~~~~~~~~~tmiiG 161 (437)
T 2yhb_A 82 VVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTPIPLLAKGKTMVVG 161 (437)
T ss_dssp EEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSCCHHHHTTCEEEEE
T ss_pred EEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccccccccCCCCEEEEE
Confidence 678876521 3456 999999999999999999998643 6999999
Q ss_pred EEEeeCC---CC----CCceEEEEEEeeCCCCceeeeEeeecC-CCcchHHhHHHHHHHHHhhhhC
Q psy2224 447 FDVTHDS---DL----KGSSYGALVASIDPQMSSWFSRVSPHR-SGNELSNDIAVSVVHALHKYRV 504 (504)
Q Consensus 447 ~DV~Hp~---~~----~~pSi~~~vaS~d~~~~~y~~~~~~q~-~~~E~i~~l~~~~~~~L~~~~~ 504 (504)
+||+||+ ++ ..|||||+|||+|.++++|++.+++|. +++|++++|++|+.++|+.|++
T Consensus 162 ~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~ 227 (437)
T 2yhb_A 162 YDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRS 227 (437)
T ss_dssp EEECCCSCCCTTCCSTTSCEEEEEEECCSTTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccccCCCcCCCCCEEEEEEEecCCCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHh
Confidence 9999998 55 479999999999999999999999999 9999999999999999999974
No 10
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.95 E-value=1.2e-28 Score=207.45 Aligned_cols=119 Identities=45% Similarity=0.745 Sum_probs=97.0
Q ss_pred hhHHHHHHHHhc--ChhhHHHHHHHhhcccEEEEeeCCeEEEEeccccCCCCCcccccCC-ccccHHHHHHHhcCccccC
Q psy2224 153 ETVLDAWEQCRN--DKYFYYRKFEAQMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKG-ENVSYIDYYQKKYNETIRN 229 (504)
Q Consensus 153 ~~ll~~i~~~~~--~~~~~~~~~~~~L~gl~V~~~y~~r~~rI~~i~~~~~~~~~F~~~~-~~isv~eYf~~~Y~i~L~~ 229 (504)
+|++|+|.++.+ ++..+++++.++|+|+.|.+.|++|+|+|++|+|+.+|.++|+.++ ..+||+|||+++||++|++
T Consensus 2 ~tvld~~~~~~~~~~~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~i~I~~ 81 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITD 81 (124)
T ss_dssp CBHHHHHHHSCCCSSHHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHCCCCCC
T ss_pred ccHHHHHHHHHHhcccHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhCceecC
Confidence 689999999864 3467899999999999999999999999999999999999999854 5899999999999999999
Q ss_pred CCCceEEeecccccccCC-CcceEEeccccccccCCChhhhhc
Q psy2224 230 RNQPMIVHKSKLRELRAG-QSEIIYLVPELCYLTGLSDDMRAD 271 (504)
Q Consensus 230 p~~Plv~~~~~~~~~~~~-~~~~~~lP~Elc~i~gl~~~~~~~ 271 (504)
|+||||+++.++++.+++ ..+.+|||||||.++||+++||+|
T Consensus 82 ~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltGltd~~r~d 124 (124)
T 3o7v_X 82 LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND 124 (124)
T ss_dssp SSCCEEEECCC----------CCEEECGGGEECCCCC------
T ss_pred CCcceEEEeeecccCCCCCCcceEEechhheeccCCChHhccC
Confidence 999999999876544333 247899999999999999999875
No 11
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.89 E-value=1.8e-23 Score=182.11 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=91.7
Q ss_pred chhhHHHHHHHHh-c-------ChhhHHHHHHHhhcccEEEEee------CCeEEEEeccccCCCCCcccccCCccccHH
Q psy2224 151 RKETVLDAWEQCR-N-------DKYFYYRKFEAQMTNSIVLTKY------NNKTYRVDDIQYDVTPCSTFPMKGENVSYI 216 (504)
Q Consensus 151 ~~~~ll~~i~~~~-~-------~~~~~~~~~~~~L~gl~V~~~y------~~r~~rI~~i~~~~~~~~~F~~~~~~isv~ 216 (504)
.+++|+|++.++. + ..+.++.++.++|+|++|.++| ++|+|+|++|+|+.++..+|+.+|+++||+
T Consensus 3 ~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g~~isv~ 82 (143)
T 1vyn_A 3 MAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIA 82 (143)
T ss_dssp -CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSSCEEEHH
T ss_pred CcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCCCEEEHH
Confidence 4679999999976 2 1235567899999999999999 679999999999999999999888899999
Q ss_pred HHHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc
Q psy2224 217 DYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT 262 (504)
Q Consensus 217 eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~ 262 (504)
|||+++ |++|+||+||||+++++ .+.+|||||||.|+
T Consensus 83 ~Yf~~~-~~~l~~p~lP~l~~g~~--------~k~~ylP~ElC~i~ 119 (143)
T 1vyn_A 83 SYFHSR-NYPLKFPQLHCLNVGSS--------IKSILLPIELCSIE 119 (143)
T ss_dssp HHHHHT-TCCCSSTTSEEEEEECS--------SSEEEEEGGGEEEC
T ss_pred HHHHHc-CCCCCCCCCCeEEecCC--------CCCeEeccEeEEcc
Confidence 999998 99999999999999976 47899999999999
No 12
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.86 E-value=3.7e-22 Score=168.51 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHhc--C------hhhHHHHHHHhhcccEEEEee------CCeEEEEeccccCCCCCcccccCCccccHHH
Q psy2224 152 KETVLDAWEQCRN--D------KYFYYRKFEAQMTNSIVLTKY------NNKTYRVDDIQYDVTPCSTFPMKGENVSYID 217 (504)
Q Consensus 152 ~~~ll~~i~~~~~--~------~~~~~~~~~~~L~gl~V~~~y------~~r~~rI~~i~~~~~~~~~F~~~~~~isv~e 217 (504)
+++|+|+++++.. + -++++++++++|+|++|.++| ++|+|+|.+|++++++..+|+.+|+++||+|
T Consensus 2 ~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~g~~isV~~ 81 (124)
T 3mj0_A 2 SMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIAS 81 (124)
T ss_dssp EEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESSSSEEEHHH
T ss_pred CccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeCCcEEEHHH
Confidence 5789999999742 1 145678999999999999998 4689999999999999999999888999999
Q ss_pred HHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc
Q psy2224 218 YYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT 262 (504)
Q Consensus 218 Yf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~ 262 (504)
||+++ |++|+||+||||+++++ .+++|||||||.|+
T Consensus 82 Yf~~~-~~~l~~p~lP~l~~g~~--------~~~~ylP~Elc~i~ 117 (124)
T 3mj0_A 82 YFHSR-NYPLKFPQLHCLNVGSS--------IKSILLPIELCSIE 117 (124)
T ss_dssp HHHTT-TCCCSCSSSEEEECCBT--------TBCCEECGGGEEEE
T ss_pred HHHHc-CCcccCCCCCeEeecCC--------CCceEecceeEEEC
Confidence 99998 99999999999999865 47899999999998
No 13
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.75 E-value=3.8e-18 Score=174.94 Aligned_cols=172 Identities=11% Similarity=0.262 Sum_probs=115.6
Q ss_pred EeCCCeeecC--CCCCCCCCCCCCCCcccccc-ccccCCCC--CeEEEEEeCCChHHHHHHHHHHHHhhcccceeccCCe
Q psy2224 327 ILPPDSIIFS--DPLKPFPVGPDANWTTPTRS-SVFRAPNL--ERWCVLTTGFMMADTENFLQLINKAAQGMRFKVNRPN 401 (504)
Q Consensus 327 vL~~P~i~~~--~~~~~~~~~~~g~W~~~~~~-~~~~~~~~--~~w~vv~~~~~~~~~~~f~~~l~~~~~~~G~~i~~P~ 401 (504)
.|..|.+.|+ ++.+ +...+.++-.+++++ ..+..... .+|++|+++++.+-++.|.+.+..... .++.+..|.
T Consensus 5 ~~~ep~~~~~~~~~~~-~~~~~~~~~~~gl~~~gpy~~~~~~~~~w~vI~~~~~~~~l~~l~~~~~~~~g-~~f~~~~~~ 82 (427)
T 2w42_A 5 KIVENGLTYRIGNGAS-VPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKID-EVWHIHNIN 82 (427)
T ss_dssp ------CEEECGGGCE-EESSCHHHHHHHHHHHCCSBCCCCSSSEEEEEESCTTCHHHHHHHHHHHHHHH-HTTCCCSCE
T ss_pred ccCCCcceeeccCCCc-ccccccCCHHHHHHhcCCCccCCCCCCEEEEEECcccHHHHHHHHHhhhhcCC-CceeecCCc
Confidence 4667778888 4442 111122333345666 66665544 899999999876644444444432221 344433221
Q ss_pred E--------------------------------------------------EEeccccc-----CCchhHHHHHHHHHHh
Q psy2224 402 V--------------------------------------------------IVKKNLAS-----KGALTIATKVAIQLCC 426 (504)
Q Consensus 402 ~--------------------------------------------------V~~q~~~k-----~~~~~~~~ni~lKiN~ 426 (504)
. |++||+.. .+..++++||++|||+
T Consensus 83 ~~~~~y~~~i~~~l~~~~~lvlvilp~~~~~~~~~~~~~~y~~K~~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~ 162 (427)
T 2w42_A 83 ISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVS 162 (427)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHCCSEEEEEESSCCHHHHHHHHHHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCCEEEEEEEccccccCCCCCcchHHHHHHHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHH
Confidence 1 56666542 2345679999999999
Q ss_pred hhCCCceeeec--CCCCeEEEEEEEeeCCCCCCceEEEEEEeeCCCCceeeeEeeecCCCcchHHhHHHHHHHHHhhhh
Q psy2224 427 KIGGAPWSVAV--PLKGLMVLGFDVTHDSDLKGSSYGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR 503 (504)
Q Consensus 427 KlGG~n~~l~~--p~~~tmiiG~DV~Hp~~~~~pSi~~~vaS~d~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~L~~~~ 503 (504)
||||+||.|+. |..+|||||+||+|++++ +++|++++.|.+..-+.+.+..|.+++|++++|.++|.++|++|+
T Consensus 163 KlGG~pW~l~~~~~~~~~miiGidv~h~~~~---~v~g~a~v~~~~g~~~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~ 238 (427)
T 2w42_A 163 KLGGKPWILNVDPEKGSDIIIGTGATRIDNV---NLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFK 238 (427)
T ss_dssp HTTCBCCEECCCTTSSCSEEEEEEEEESSSS---EEEEEEEEECTTSCEEEEEECCCEEGGGHHHHHHHHHHHHHHHHH
T ss_pred HhCCcceecccCCCCCCeEEEEEEEEEcCCC---cEEEEEEEEcCCCCEEEEEEEecCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999987 678899999999999865 788886666655554555566677789999999999999999997
No 14
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.62 E-value=3.1e-16 Score=166.08 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=90.3
Q ss_pred ccchhhHHHHHHHHhcC--------hhhHHHHHHHhhcccEEEEee------CCeEEEEeccccCCCCCcccccCCcccc
Q psy2224 149 VLRKETVLDAWEQCRND--------KYFYYRKFEAQMTNSIVLTKY------NNKTYRVDDIQYDVTPCSTFPMKGENVS 214 (504)
Q Consensus 149 ~f~~~~ll~~i~~~~~~--------~~~~~~~~~~~L~gl~V~~~y------~~r~~rI~~i~~~~~~~~~F~~~~~~is 214 (504)
++.+.+++|++.++..+ .+..+.++.+.|||++|.++| .+|.|+|.+++..++...+|+.++++||
T Consensus 381 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~~~~~~s 460 (509)
T 1r6z_P 381 FPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVT 460 (509)
T ss_dssp SSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEETTEEEE
T ss_pred cCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEeccCCeEEE
Confidence 56788999999997521 112235689999999999999 4788999999987777889999889999
Q ss_pred HHHHHHHhcCccccCCCCceEEeecccccccCCCcceEEecccccccc
Q psy2224 215 YIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLT 262 (504)
Q Consensus 215 v~eYf~~~Y~i~L~~p~~Plv~~~~~~~~~~~~~~~~~~lP~Elc~i~ 262 (504)
|+|||+ +||++|+||++|||+++.+ .+++|||+|||.|+
T Consensus 461 v~~yf~-~~~~~l~~p~lp~v~~~~~--------~~~~~~P~e~~~i~ 499 (509)
T 1r6z_P 461 IASYFH-SRNYPLKFPQLHCLNVGSS--------IKSILLPIELCSIE 499 (509)
T ss_dssp HHHHHH-HTTCCCSCTTSEEEECSCT--------TSCCEECGGGEEEE
T ss_pred HHHHHH-HcCCcccCCCCCeEecCCC--------CCCceecceeeEec
Confidence 999999 8999999999999999876 36899999999999
No 15
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.47 E-value=2.1e-14 Score=124.25 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=67.9
Q ss_pred ccccCCCCCeEEEEEeC--CChHHHHHHHHHHHHhhcccceeccCCeE--------------------------------
Q psy2224 357 SVFRAPNLERWCVLTTG--FMMADTENFLQLINKAAQGMRFKVNRPNV-------------------------------- 402 (504)
Q Consensus 357 ~~~~~~~~~~w~vv~~~--~~~~~~~~f~~~l~~~~~~~G~~i~~P~~-------------------------------- 402 (504)
+|++|+++++|++++++ .+.+.+++|++.|.+.|+.+||.+++|..
T Consensus 4 kf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~~~~qlv~~il 83 (139)
T 4g0o_A 4 KMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRAPGLQLLIVIL 83 (139)
T ss_dssp EEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHCTTCSEEEEEC
T ss_pred eEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhcCCCcEEEEEE
Confidence 79999999999999984 46778999999999999999999986421
Q ss_pred -------------------EEecccccC----CchhHHHHHHHHHHhhhCCCceee
Q psy2224 403 -------------------IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSV 435 (504)
Q Consensus 403 -------------------V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l 435 (504)
|+|||+..+ +.+||++||+||||+||||+||.|
T Consensus 84 p~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 84 PDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp CSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 677877532 568999999999999999999975
No 16
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.43 E-value=6.8e-14 Score=122.30 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=66.5
Q ss_pred ccccCCCCCeEEEEEeCCC--hHHHHHHHHHHHHhhcccceeccCCeE--------------------------------
Q psy2224 357 SVFRAPNLERWCVLTTGFM--MADTENFLQLINKAAQGMRFKVNRPNV-------------------------------- 402 (504)
Q Consensus 357 ~~~~~~~~~~w~vv~~~~~--~~~~~~f~~~l~~~~~~~G~~i~~P~~-------------------------------- 402 (504)
+|++|+++++|++++++++ .+.+++|++.|.+.|+.+||.+++|..
T Consensus 4 kf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 83 (147)
T 4g0x_A 4 KMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGKEI 83 (147)
T ss_dssp CEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTCCC
T ss_pred EEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCCCC
Confidence 7999999999999999864 467899999999999999999874321
Q ss_pred ---------------------------EEecccccC----CchhHHHHHHHHHHhhhCCCceee
Q psy2224 403 ---------------------------IVKKNLASK----GALTIATKVAIQLCCKIGGAPWSV 435 (504)
Q Consensus 403 ---------------------------V~~q~~~k~----~~~~~~~ni~lKiN~KlGG~n~~l 435 (504)
|+|||+..+ ..+||++||+||||+||||+||.|
T Consensus 84 ~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 84 DLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred eEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 667776421 468999999999999999999975
No 17
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.41 E-value=1.8e-13 Score=118.26 Aligned_cols=77 Identities=9% Similarity=0.270 Sum_probs=64.3
Q ss_pred c-ccccCCCCCeEEEEEeCC----ChHHHHHHHHHHHHhhcccceeccC-CeE---------------------------
Q psy2224 356 S-SVFRAPNLERWCVLTTGF----MMADTENFLQLINKAAQGMRFKVNR-PNV--------------------------- 402 (504)
Q Consensus 356 ~-~~~~~~~~~~w~vv~~~~----~~~~~~~f~~~l~~~~~~~G~~i~~-P~~--------------------------- 402 (504)
+ +|++|+++++|++++++. +.+.+++|++.|.+.|+.+||.++. |.+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~~~~qlv 81 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLV 81 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHCTTCCEE
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcCCCCcEE
Confidence 5 899999999999999862 5778999999999999999999975 422
Q ss_pred -----------------------EEeccccc----CCchhHHHHHHHHHHhhhCCCc
Q psy2224 403 -----------------------IVKKNLAS----KGALTIATKVAIQLCCKIGGAP 432 (504)
Q Consensus 403 -----------------------V~~q~~~k----~~~~~~~~ni~lKiN~KlGG~n 432 (504)
|+|||+.. +...||++||+||||+||||+|
T Consensus 82 ~~ilp~~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 82 VVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp EEEECSSCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred EEEECCCChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 67777642 2468999999999999999997
No 18
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.41 E-value=2.5e-13 Score=147.35 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=83.5
Q ss_pred HHHHhhcccEEEEeeCC-eEEEEeccccCCCCCcccccCCccccHHHHHHHhcCccccCCCCceEEeecccc--------
Q psy2224 172 KFEAQMTNSIVLTKYNN-KTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLR-------- 242 (504)
Q Consensus 172 ~~~~~L~gl~V~~~y~~-r~~rI~~i~~~~~~~~~F~~~~~~isv~eYf~~~Y~i~L~~p~~Plv~~~~~~~-------- 242 (504)
.+.+.|+|..|.|.||+ |+|+|++|+|+.+|.++|+.+++.+|+.|||+++||++|++++||+|.++...+
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~~ 230 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPA 230 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETTEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCCS
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCCCCCCHHHHHHHHcCcccccCCCCeEEEEeccccccccccc
Confidence 46678999999999998 999999999999999999987788999999999999999999999999987531
Q ss_pred --cccCCCcceEEeccccccccCCChhh
Q psy2224 243 --ELRAGQSEIIYLVPELCYLTGLSDDM 268 (504)
Q Consensus 243 --~~~~~~~~~~~lP~Elc~i~gl~~~~ 268 (504)
..+...++.++||||||.++|++...
T Consensus 231 ~~~~~~~~~~~v~L~PELC~vt~Lp~sl 258 (756)
T 2qvw_A 231 PGSWDDLAPKLRFLPPELCLLLPDEFDL 258 (756)
T ss_dssp TTC-CCSCSSCEEECTTTCEECCTTSCT
T ss_pred ccccccCCccceeeCHHHheeecCchhH
Confidence 11122356799999999999998764
No 19
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.37 E-value=1.2e-13 Score=121.10 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=55.5
Q ss_pred ccccCCCCCeEEEEEeCCCh---HHHHHHHHHHHHhhcccceeccCCeE-------------------------------
Q psy2224 357 SVFRAPNLERWCVLTTGFMM---ADTENFLQLINKAAQGMRFKVNRPNV------------------------------- 402 (504)
Q Consensus 357 ~~~~~~~~~~w~vv~~~~~~---~~~~~f~~~l~~~~~~~G~~i~~P~~------------------------------- 402 (504)
+|++++++++|++++++++. +.+++|++.|.+.|+.+||.+++|.+
T Consensus 4 kf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (150)
T 4g0m_A 4 GVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRKHG 83 (150)
T ss_dssp -----CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred eECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHhcC
Confidence 79999999999999997542 47889999999999999999875431
Q ss_pred ------------------------------EEeccccc----CCchhHHHHHHHHHHhhhCCCceee
Q psy2224 403 ------------------------------IVKKNLAS----KGALTIATKVAIQLCCKIGGAPWSV 435 (504)
Q Consensus 403 ------------------------------V~~q~~~k----~~~~~~~~ni~lKiN~KlGG~n~~l 435 (504)
|+|||+.. +...||++||+||||+||||+||.|
T Consensus 84 ~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 84 GARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred CCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 66777642 2568999999999999999999975
Done!