RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2224
(504 letters)
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 285 bits (730), Expect = 2e-93
Identities = 46/324 (14%), Positives = 109/324 (33%), Gaps = 38/324 (11%)
Query: 6 LNLYRIDFNPPEDIMGVKRGLLRDHKDKIG-AYVFDGTMMFTPNTIIGKEMKLMSKKRDE 64
+ +YR+ +P E++ + R + +G + ++ T + E
Sbjct: 20 IYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIATTK-----------ELEYE 68
Query: 65 TPVELTIRHVRVLEYGDAQYTQLFNILIRQTLRALDLKLLGRNYFDPAAKEDIPQYRLEV 124
D Q + +L + +L L R + P +V
Sbjct: 69 GEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTF-----GDYKV 123
Query: 125 WPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRND-----------KYFYYRKF 173
P + S+ + + D L + + H++ +T+ + + +
Sbjct: 124 IPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIAS 183
Query: 174 EAQMTNSIVLTKYNNKTYRVD---DIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNR 230
+ +Y K ++Y + +++Y+K +
Sbjct: 184 PLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPE-AKLEFYRKFGQVDL--- 239
Query: 231 NQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERV 290
QP I+ K +++ ++ IYL+P+L T ++ + +D + K + E T++ P ER
Sbjct: 240 KQPAILAKFA-SKIKKNKNYKIYLLPQLVVPTYNAEQLESD--VAKEILEYTKLMPEERK 296
Query: 291 AKFNVFRKRIENSEAKEVLKRWEL 314
+++ + L E+
Sbjct: 297 ELLENILAEVDSDIIDKSLSEIEV 320
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 86.6 bits (214), Expect = 2e-19
Identities = 13/104 (12%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 402 VIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVAV--PLKGLMVLGFDVTHDSDLKGSS 459
+ L+++ + +Q K+GG PW + V +++G T + +
Sbjct: 46 FMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDN---VN 102
Query: 460 YGALVASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR 503
+ ++ +SP + +E + ++ ++ ++
Sbjct: 103 LFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFK 146
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 84.9 bits (210), Expect = 2e-18
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 402 VIVKKNLASKGALTIATKVAIQLCCKIGGAPWSVA-VPLKGLMVLGFDVTHDSDLKGSSY 460
VI+ + L ++ + VA Q+ K G P+ + + K +G D++ + +
Sbjct: 141 VILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVN 200
Query: 461 G-ALVASIDPQ-MSSWFSRVSPHRSGNELSNDIAVSVVHALHKY 502
A + + + S G +L+ V L K
Sbjct: 201 AVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKL 244
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 76.5 bits (188), Expect = 1e-15
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 405 KKNLASKGALTIATKVAIQLCCKIGGAPWSVAVPLKGLMVLGFDVTHDSDLKGSSYGALV 464
K ++ L + + Q+ K+G + + ++G DV +G G+ V
Sbjct: 192 DKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFNYDYIIGIDVAPMKRSEGYIGGSAV 251
Query: 465 ASIDPQMSSWFSRVSPHRSGNELSNDIAVSVVHALHKYR 503
+ E + + K++
Sbjct: 252 MFDSQGYIRKIVPIKIGEQRGESVDMNEF-FKEMVDKFK 289
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C
1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 70.7 bits (173), Expect = 2e-15
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 157 DAWEQCRNDKYFYYRKFEAQMTNSIVLTKYNN---KTYRVDDIQYDVTPCSTFPM----- 208
+ EQ + +F ++ V + + YRV ++ TFP+
Sbjct: 17 NIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESG 76
Query: 209 KGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAGQSEIIYLVPELCYLTGL 264
+ + Y+++KYN ++ + P + + + YL E+C +
Sbjct: 77 QTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKH--------TYLPLEVCNIVAG 124
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 36.0 bits (83), Expect = 0.002
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 188 NKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMIVHKSKLRELRAG 247
+ YRV+ + TF G+ V+ I Y N ++ + S ++
Sbjct: 54 PRVYRVNGLSRAPASSETFEHDGKKVT-IASYFHSRNYPLKFPQLHCLNVGSSIKS---- 108
Query: 248 QSEIIYLVPELCYL 261
I L ELC +
Sbjct: 109 ----ILLPIELCSI 118
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 27.9 bits (61), Expect = 2.7
Identities = 18/163 (11%), Positives = 38/163 (23%), Gaps = 1/163 (0%)
Query: 176 QMTNSIVLTKYNNKTYRVDDIQYDVTPCSTFPMKGENVSYIDYYQKKYNETIRNRNQPMI 235
N + ++ +
Sbjct: 180 AGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASY 239
Query: 236 VHKSKLREL-RAGQSEIIYLVPELCYLTGLSDDMRADFRLMKPLGEITRVRPRERVAKFN 294
+ E R G+ + + Y S D + +R + + + P R +F
Sbjct: 240 YVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFL 299
Query: 295 VFRKRIENSEAKEVLKRWELALDTNLARVQGHILPPDSIIFSD 337
R ++V + L+ L + P +F D
Sbjct: 300 EARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFED 342
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA
reductase {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 354 TRSSVFRAPNLERWCVLTTGFMMADTENFLQLINKAAQGMRF 395
TR V R P + +E F + RF
Sbjct: 3 TRGPVVRLPRACD--SAEVKAWLETSEGFAVIKEAFDSTSRF 42
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 95
Score = 25.6 bits (56), Expect = 6.3
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 159 WEQCRNDKYFYYRKFEAQMTNSIVLTKYNNKTYRVDD 195
W + ++ Y+ K A ++N+ + + Y +
Sbjct: 38 WVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKP 74
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 26.2 bits (56), Expect = 7.2
Identities = 9/134 (6%), Positives = 32/134 (23%), Gaps = 1/134 (0%)
Query: 125 WPGWDTSMRQMENDIMLCVELSHKVLRKETVLDAWEQCRNDKYFYYRKFEAQMTNSIVLT 184
P + ++L+ + + + Y + +
Sbjct: 42 PPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQL 101
Query: 185 KYNNKTYRVDDIQYDVTPCSTFPMKGENV-SYIDYYQKKYNETIRNRNQPMIVHKSKLRE 243
+ ++ + + ++ + + V + +RE
Sbjct: 102 FFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRE 161
Query: 244 LRAGQSEIIYLVPE 257
+ YL+P+
Sbjct: 162 RFKSKKPTDYLIPD 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,920,649
Number of extensions: 90752
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 11
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)