BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2227
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + ++ + + D
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 59 MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAM 106
++ V + ++ F+Y G+ + LL AA + ++ L M DA+
Sbjct: 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 119
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + ++ + + D
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 220
Query: 59 MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAM 106
++ V + ++ F+Y G+ + LL AA + ++ L M DA+
Sbjct: 221 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 268
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV- 63
L L IL DV ++ + + HK VL +CS F + QL + ++ D + +
Sbjct: 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE 79
Query: 64 -LRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSR 103
L++FMY ++ E N+ A++ A + +++ + R
Sbjct: 80 GFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCR 120
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 10 ENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVL-KDMKFSVLRSLI 68
+ IL DVTL+ + H+ VLA+CS YF L Q ++ L +++ L+
Sbjct: 28 KKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLL 87
Query: 69 EFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
+F Y + ++ +N+ ++ A+F + L
Sbjct: 88 QFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 13 ILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMY 72
+L D T + + K HK VLA+CS YF+ + Q ++ L + L ++EFMY
Sbjct: 26 LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHLDISNAAGLGQVLEFMY 82
Query: 73 CGETSIAEDNLPALLDAAKFFEVKGL 98
+ S++ +N+ +L A F +++ +
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQMQDI 108
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 13 ILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMY 72
+L D T + + K HK VLA+CS YF+ + Q ++ L + L ++EFMY
Sbjct: 24 LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHLDISNAAGLGQVLEFMY 80
Query: 73 CGETSIAEDNLPALLDAAKFFEVKGL 98
+ S++ +N+ +L A F +++ +
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQMQDI 106
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 10 ENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVL-KDMKFSVLRSLI 68
+ +L DVT++ + H+ VLA+CS YF + Q + L +++ LI
Sbjct: 32 KKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLI 91
Query: 69 EFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
+F Y + +++DN+ + +F V +
Sbjct: 92 QFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
RL E L D T++ K H+ VLAS S YF + + + + +K
Sbjct: 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADG 71
Query: 64 LRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMS 107
+ L+EF+Y G ++ N+ + AA + +V+ + + + M
Sbjct: 72 FQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMK---- 60
L L IL DV ++ + + HK VL +CS F + QL + ++ D +
Sbjct: 23 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPE 82
Query: 61 -FSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSR 103
F + L++FMY ++ E N+ A++ A + +++ + R
Sbjct: 83 GFCI---LLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCR 123
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 13 ILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV-------LR 65
+L DV ++ H+ VLA+CS YF K+L T +V + + + L
Sbjct: 34 LLCDVVILVEGREFPTHRSVLAACSQYF-----KKLFTSGAVVDQQNVYEIDFVSAEALT 88
Query: 66 SLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQ 108
+L++F Y +++ N+ +L AA+ E+ ++ + D + +
Sbjct: 89 ALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDR 131
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 13 ILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV-------LR 65
+L DV ++ H+ VLA+CS YF K+L T +V + + + L
Sbjct: 24 LLCDVVILVEGREFPTHRSVLAACSQYF-----KKLFTSGAVVDQQNVYEIDFVSAEALT 78
Query: 66 SLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRD 104
+L++F Y +++ N+ +L AA+ E+ ++ + D
Sbjct: 79 ALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCAD 117
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 13 ILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVL-KDMKFSVLRSLIEFM 71
+L DVT+ + H+ VLA+CS YF + Q I L +++ LI+F
Sbjct: 28 VLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFA 87
Query: 72 YCGETSIAEDNLPALLDAAKFFEVKGL 98
Y + ++++N+ + +F V +
Sbjct: 88 YTAKLILSKENVDEVCKCVEFLSVHNI 114
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ----KQLGTHPLIVLKDMK 60
L E D L+ + + V K +LA+ SPY L K G+ I L+ +
Sbjct: 38 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS 97
Query: 61 FSVLRSLIEFMYCGETSIAEDNLPALLDAA 90
V+R ++++++ G+ + ED + ++ AA
Sbjct: 98 VMVMREILDYIFSGQIRLNEDTIQDVVQAA 127
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ----KQLGTHPLIVLKDMK 60
L E D L+ + + V K +LA+ SPY L K G+ I L+ +
Sbjct: 22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS 81
Query: 61 FSVLRSLIEFMYCGETSIAEDNLPALLDAA 90
V R ++++++ G+ + ED + ++ AA
Sbjct: 82 VXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ----KQLGTHPLIVLKDMK 60
L E D L+ + + V K +LA+ SPY L K G+ I L+ +
Sbjct: 22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS 81
Query: 61 FSVLRSLIEFMYCGETSIAEDNLPALLDAA 90
V R ++++++ G+ + ED + ++ AA
Sbjct: 82 VXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + + + D
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEIND 80
Query: 59 MKFSVLRSLIEFMYCGE 75
++ V + F+Y G+
Sbjct: 81 VEPEVFKEXXCFIYTGK 97
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE 75
D TL K H VLA CS +F+ + GT +VL + L++F Y G
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGD--GTGGSVVLPAGFAEIFGLLLDFFYTGH 84
Query: 76 TSIAEDNLPALLDAAKFFEV 95
++ N +L AAK V
Sbjct: 85 LALTSGNRDQVLLAAKELRV 104
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE 75
D TL K H VLA CS +F+ + G+ +VL + L++F Y G
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGD--GSGGSVVLPAGFAEIFGLLLDFFYTGH 83
Query: 76 TSIAEDNLPALLDAAK 91
++ N +L AA+
Sbjct: 84 LALTSGNRDQVLLAAR 99
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV----LRSLIEFM 71
DV+++ H K H+ VLA+ S YF + L + + ++ +V + ++ F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYF-----RDLFNNSRSAVVELPAAVQPQSFQQILSFC 89
Query: 72 YCGETSIAEDNLPALLDAAKFFEVK 96
Y G S+ + L+ A F +++
Sbjct: 90 YTGRLSMNVGDQDLLMYTAGFLQIQ 114
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 13 ILVDVTLM---CNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFS------- 62
+ D+TL + H+ VLA+ + YF +L Q ++ K+S
Sbjct: 49 LFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEP 108
Query: 63 -VLRSLIEFMYCGETSIAEDNLPALLDAAKFF 93
+ ++IE+MY G ++ ++ +L+ A F
Sbjct: 109 DTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 140
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE 75
DVT++ + HK +L++ S YF + ++ L ++ + ++ ++Y +
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSV---AGQVVELSFIRAEIFAEILNYIYSSK 89
Query: 76 -TSIAEDNLPALLDAAKFFEVKGLASM 101
+ D L L+ + + VK +A++
Sbjct: 90 IVRVRSDLLDELIKSGQLLGVKFIAAL 116
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE 75
DVT++ + HK +L++ S YF + ++ L ++ + ++ ++Y +
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSV---AGQVVELSFIRAEIFAEILNYIYSSK 91
Query: 76 -TSIAEDNLPALLDAAKFFEVKGLASM 101
+ D L L+ + + VK +A +
Sbjct: 92 IVRVRSDLLDELIKSGQLLGVKFIAEL 118
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 13 ILVDVTLM---CNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFS------- 62
+ D+TL + H+ VLA+ + YF +L Q ++ K+S
Sbjct: 31 LFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEP 90
Query: 63 -VLRSLIEFMYCGETSIAEDNLPALLDAAKFF 93
+ ++IE+ Y G ++ ++ +L+ A F
Sbjct: 91 DTVEAVIEYXYTGRIRVSTGSVHEVLELADRF 122
>pdb|2Q22|A Chain A, Crystal Structure Of Uncharacterized Protein (Yp_323524.1)
From Anabaena Variabilis Atcc 29413 At 2.11 A Resolution
pdb|2Q22|B Chain B, Crystal Structure Of Uncharacterized Protein (Yp_323524.1)
From Anabaena Variabilis Atcc 29413 At 2.11 A Resolution
pdb|2Q22|C Chain C, Crystal Structure Of Uncharacterized Protein (Yp_323524.1)
From Anabaena Variabilis Atcc 29413 At 2.11 A Resolution
Length = 139
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 29 HKVVLASCSPYFEGVLQKQLGTHPL 53
H+ VL SC Y+EG + + G PL
Sbjct: 111 HRGVLVSCQSYYEGGINEXYGHLPL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,140,805
Number of Sequences: 62578
Number of extensions: 90645
Number of successful extensions: 203
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 24
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)