Query psy2227
Match_columns 175
No_of_seqs 245 out of 1307
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:24:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 1.8E-25 3.9E-30 195.6 11.7 117 1-119 12-132 (557)
2 KOG4441|consensus 99.9 8E-25 1.7E-29 191.7 10.6 117 1-117 23-141 (571)
3 PHA02790 Kelch-like protein; P 99.9 8.1E-24 1.8E-28 182.4 10.0 113 4-118 12-128 (480)
4 PF00651 BTB: BTB/POZ domain; 99.9 2.7E-23 5.8E-28 145.0 10.7 105 5-109 1-110 (111)
5 PHA03098 kelch-like protein; P 99.9 1.6E-22 3.4E-27 176.1 10.1 105 11-117 6-112 (534)
6 smart00225 BTB Broad-Complex, 99.8 2.4E-19 5.2E-24 119.0 9.2 88 16-103 1-90 (90)
7 KOG4350|consensus 99.8 3E-19 6.6E-24 147.1 8.0 119 2-120 32-155 (620)
8 KOG2075|consensus 99.6 1.1E-15 2.4E-20 128.1 8.8 114 2-115 102-222 (521)
9 KOG4591|consensus 99.6 2.2E-15 4.8E-20 114.2 5.4 115 2-117 54-173 (280)
10 KOG4682|consensus 99.3 2E-12 4.3E-17 106.8 6.8 112 5-117 60-177 (488)
11 KOG0783|consensus 99.0 1.5E-10 3.3E-15 102.8 3.4 103 15-117 711-822 (1267)
12 KOG2716|consensus 99.0 2.5E-09 5.5E-14 83.6 9.3 95 17-111 7-106 (230)
13 KOG0783|consensus 98.9 1.8E-09 4E-14 96.1 6.0 93 11-103 555-682 (1267)
14 KOG2838|consensus 98.5 2.3E-07 4.9E-12 74.0 6.6 103 2-104 118-227 (401)
15 PF02214 BTB_2: BTB/POZ domain 98.5 1.6E-07 3.5E-12 63.7 4.1 85 17-102 1-94 (94)
16 KOG2838|consensus 98.5 4E-07 8.7E-12 72.6 6.4 113 3-115 224-393 (401)
17 PF11822 DUF3342: Domain of un 98.3 7.2E-07 1.6E-11 72.7 4.2 88 24-111 14-105 (317)
18 smart00512 Skp1 Found in Skp1 97.7 0.00021 4.5E-09 49.4 7.4 78 17-95 4-104 (104)
19 KOG2714|consensus 97.7 0.00019 4.1E-09 60.5 8.2 84 17-100 13-102 (465)
20 KOG1665|consensus 97.7 0.00017 3.6E-09 56.3 7.1 88 17-104 11-105 (302)
21 KOG1724|consensus 97.5 0.00053 1.2E-08 51.2 7.5 93 22-115 13-132 (162)
22 PF03931 Skp1_POZ: Skp1 family 97.4 0.0014 3.1E-08 41.0 7.2 55 17-72 3-58 (62)
23 KOG0511|consensus 97.3 0.00012 2.6E-09 61.0 2.2 84 15-98 150-234 (516)
24 KOG0511|consensus 97.3 0.00033 7.2E-09 58.4 4.2 71 24-95 301-377 (516)
25 KOG3473|consensus 96.9 0.0041 8.9E-08 42.2 6.3 78 17-95 19-112 (112)
26 KOG2715|consensus 96.9 0.0028 6E-08 47.4 5.9 94 17-110 23-122 (210)
27 COG5201 SKP1 SCF ubiquitin lig 96.8 0.005 1.1E-07 44.0 6.0 98 17-115 4-127 (158)
28 KOG1987|consensus 95.8 0.0014 3.1E-08 53.1 -1.5 94 23-116 109-207 (297)
29 PF01466 Skp1: Skp1 family, di 92.7 0.07 1.5E-06 34.8 1.6 39 77-115 10-48 (78)
30 KOG2723|consensus 92.7 0.32 7E-06 38.1 5.5 93 13-106 6-106 (221)
31 KOG3840|consensus 87.4 1.1 2.5E-05 36.8 4.6 81 16-96 97-185 (438)
32 KOG3713|consensus 83.2 7.8 0.00017 33.8 8.0 93 16-109 32-140 (477)
33 KOG4390|consensus 76.4 10 0.00022 32.5 6.4 83 17-103 42-132 (632)
34 PHA02790 Kelch-like protein; P 75.5 5.1 0.00011 34.9 4.7 44 66-112 111-154 (480)
35 PF07707 BACK: BTB And C-termi 70.3 5.8 0.00013 26.2 3.1 28 84-111 2-29 (103)
36 KOG4350|consensus 69.4 4.4 9.6E-05 34.8 2.7 33 78-110 145-177 (620)
37 KOG3863|consensus 68.2 0.72 1.6E-05 41.1 -2.2 39 2-45 2-40 (604)
38 KOG4682|consensus 65.8 4 8.8E-05 34.9 1.8 34 77-110 169-202 (488)
39 PHA03098 kelch-like protein; P 62.7 10 0.00023 33.1 3.9 34 77-110 104-137 (534)
40 KOG1778|consensus 55.2 9.2 0.0002 31.8 2.1 91 18-108 30-156 (319)
41 smart00875 BACK BTB And C-term 54.8 13 0.00027 24.2 2.5 27 85-111 3-29 (101)
42 PF09593 Pathogen_betaC1: Beta 49.5 11 0.00023 26.7 1.4 55 22-76 20-77 (117)
43 PF10905 DUF2695: Protein of u 46.1 25 0.00053 21.2 2.5 18 4-21 35-52 (53)
44 PF02519 Auxin_inducible: Auxi 31.6 1.7E+02 0.0037 19.9 6.3 52 17-71 41-99 (100)
45 PF01848 HOK_GEF: Hok/gef fami 25.9 91 0.002 17.9 2.5 22 8-29 19-40 (43)
46 PF06200 tify: tify domain; I 23.3 35 0.00076 18.8 0.4 14 56-69 19-32 (36)
47 PRK09738 small toxic polypepti 23.1 95 0.0021 18.6 2.3 22 8-29 24-45 (52)
48 CHL00008 petG cytochrome b6/f 22.5 32 0.00069 19.0 0.2 13 163-175 4-16 (37)
49 PRK00665 petG cytochrome b6-f 21.2 35 0.00076 18.8 0.2 13 163-175 4-16 (37)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=195.65 Aligned_cols=117 Identities=20% Similarity=0.356 Sum_probs=107.6
Q ss_pred CHHHHHHHHHCCCccceEEEeC-CeEEEhhHHHHhhcCHHHHHhhcC--CCC-CCCeEEeCCCCHHHHHHHHHHHcCCcc
Q psy2227 1 MATRLGYLLENQILVDVTLMCN-THTLKVHKVVLASCSPYFEGVLQK--QLG-THPLIVLKDMKFSVLRSLIEFMYCGET 76 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~-~~~f~aHr~vLaa~S~~F~~lf~~--~~~-~~~~i~l~~v~~~~f~~lL~f~Ytg~l 76 (175)
+++.|+++|+++.+|||++.++ |++|+|||.|||++|+||++||.. .+. ...+|.|.++++++|+.+|+|+|||+
T Consensus 12 ~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 12 VVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC-
Confidence 4689999999999999999997 899999999999999999999954 433 35689999999999999999999997
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccccc
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNTV 119 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~ 119 (175)
++.+|+.+++.+|++||++.|++.|++||.+.++.+||....
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 688999999999999999999999999999999999997654
No 2
>KOG4441|consensus
Probab=99.92 E-value=8e-25 Score=191.73 Aligned_cols=117 Identities=27% Similarity=0.485 Sum_probs=112.4
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhc--CCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ--KQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~--~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+.+|+++.+|||++.+++++|.|||.|||++|+||++||. ..+....+|.+.+++++.++.+++|+|||++.+
T Consensus 23 ~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i 102 (571)
T KOG4441|consen 23 LLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEI 102 (571)
T ss_pred HHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEe
Confidence 368899999999999999999999999999999999999999995 577888899999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
+.+|+++|+.+|.+|||+++.+.|.+||.+++..+||..
T Consensus 103 ~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclg 141 (571)
T KOG4441|consen 103 SEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLG 141 (571)
T ss_pred chHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999976
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=8.1e-24 Score=182.43 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=100.2
Q ss_pred HHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhc--CCCCCCCeEEe--CCCCHHHHHHHHHHHcCCcccCC
Q psy2227 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ--KQLGTHPLIVL--KDMKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 4 ~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~--~~~~~~~~i~l--~~v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
.+-++|..|.||||++.+| +.|+|||.|||++|+||++||. ..|+.. .|.+ .++++++++.+|+|+|||++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 12 NILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred hHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe
Confidence 4567899999999977655 5999999999999999999994 355543 4554 38999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccccc
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNT 118 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~ 118 (175)
.+|+++++.+|++||++.+++.|++||.+.++.+||...
T Consensus 90 ~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i 128 (480)
T PHA02790 90 SHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVEC 128 (480)
T ss_pred cccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHH
Confidence 999999999999999999999999999999999999763
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.90 E-value=2.7e-23 Score=145.04 Aligned_cols=105 Identities=29% Similarity=0.508 Sum_probs=93.3
Q ss_pred HHHHHHCCCccceEEEeC-CeEEEhhHHHHhhcCHHHHHhhcCC-CCCC--CeEEeCCCCHHHHHHHHHHHcCCcccCC-
Q psy2227 5 LGYLLENQILVDVTLMCN-THTLKVHKVVLASCSPYFEGVLQKQ-LGTH--PLIVLKDMKFSVLRSLIEFMYCGETSIA- 79 (175)
Q Consensus 5 l~~l~~~~~~~Dv~i~v~-~~~f~aHr~vLaa~S~~F~~lf~~~-~~~~--~~i~l~~v~~~~f~~lL~f~Ytg~l~~~- 79 (175)
|+++++++.++|++|.++ ++.|++||.+|+++|+||+.+|... .... ..|.+++++++.|+.+++|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 688999999999999999 8999999999999999999999665 2333 3688899999999999999999999998
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhhCC
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 109 (175)
.+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999764
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=176.05 Aligned_cols=105 Identities=20% Similarity=0.399 Sum_probs=98.9
Q ss_pred CCCccceEEEe--CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHH
Q psy2227 11 NQILVDVTLMC--NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLD 88 (175)
Q Consensus 11 ~~~~~Dv~i~v--~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~ 88 (175)
++.||||+|.+ +|++|+|||.||+++|+||++||..... ...|.+.+ +++.|+.+|+|+|||++.++.+++.+++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~ 83 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILS 83 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHH
Confidence 89999999998 9999999999999999999999965444 56899999 99999999999999999999999999999
Q ss_pred HHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 89 AAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 89 ~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
+|++|+++.|++.|++||.+.++.+||..
T Consensus 84 ~A~~l~~~~l~~~C~~~l~~~l~~~nc~~ 112 (534)
T PHA03098 84 IANYLIIDFLINLCINYIIKIIDDNNCID 112 (534)
T ss_pred HHHHhCcHHHHHHHHHHHHHhCCHhHHHH
Confidence 99999999999999999999999988865
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.81 E-value=2.4e-19 Score=119.02 Aligned_cols=88 Identities=35% Similarity=0.699 Sum_probs=81.3
Q ss_pred ceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCC--CCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHHHHHhc
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLG--THPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFF 93 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~--~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~~A~~l 93 (175)
|+++.++|+.|++||.+|+++|+||+.+|..... ....+.+++++++.|+.+++|+|+|++.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999965433 56788999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHH
Q psy2227 94 EVKGLASMSR 103 (175)
Q Consensus 94 ~i~~L~~~c~ 103 (175)
++++|.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 7
>KOG4350|consensus
Probab=99.78 E-value=3e-19 Score=147.09 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=106.8
Q ss_pred HHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhh--cCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC-
Q psy2227 2 ATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVL--QKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI- 78 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf--~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~- 78 (175)
.+.+.+++-..+++||++++++++|+|||.|||+||.|||+|+ ++.++.+..|.+.+-..++|+.+|+|||||++.+
T Consensus 32 S~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~ 111 (620)
T KOG4350|consen 32 SQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLA 111 (620)
T ss_pred hHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecc
Confidence 3678889999999999999999999999999999999999999 5678888899999989999999999999999865
Q ss_pred --CcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccccccc
Q psy2227 79 --AEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNTVS 120 (175)
Q Consensus 79 --~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~ 120 (175)
..+.+.++|.+|.+|+.++|.....+|+.+-+..+|.+-...
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifd 155 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFD 155 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeee
Confidence 456788999999999999999999999999988888765433
No 8
>KOG2075|consensus
Probab=99.63 E-value=1.1e-15 Score=128.09 Aligned_cols=114 Identities=24% Similarity=0.348 Sum_probs=102.1
Q ss_pred HHHHHHHHHCCCccceEEEeCC-----eEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHcCC
Q psy2227 2 ATRLGYLLENQILVDVTLMCNT-----HTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLKDMKFSVLRSLIEFMYCG 74 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~-----~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~~v~~~~f~~lL~f~Ytg 74 (175)
.++...++++...+|+.+++++ +.++|||.||+..|..|.+||.+ .+....+|.++|+.+.+|..+|+|+|++
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsd 181 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSD 181 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcc
Confidence 3456678889999999999973 67999999999999999999943 3344678999999999999999999999
Q ss_pred cccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcc
Q psy2227 75 ETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTT 115 (175)
Q Consensus 75 ~l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~ 115 (175)
++.+..+++..++.+|++|.++.|.+.|.+|++..+...+.
T Consensus 182 ev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~na 222 (521)
T KOG2075|consen 182 EVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNA 222 (521)
T ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHH
Confidence 99999999999999999999999999999999998876664
No 9
>KOG4591|consensus
Probab=99.58 E-value=2.2e-15 Score=114.16 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=96.5
Q ss_pred HHHHHHHHHCCCccceEEEeC---CeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC
Q psy2227 2 ATRLGYLLENQILVDVTLMCN---THTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~---~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+.-...++++.+|+|++|.++ ++.++|||.|||+||++.+---++.+ ...+..++|+++++|...++|+||+++.+
T Consensus 54 LaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidf 132 (280)
T KOG4591|consen 54 LAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDF 132 (280)
T ss_pred HHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCc-chhhhcccccCHHHHHHhheeeecccccc
Confidence 344567889999999999997 47799999999999998862222222 23467888999999999999999999987
Q ss_pred CcC--cHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 79 AED--NLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 79 ~~~--~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
..+ .+.++.++|..|+++.|++.|++-+...+..+||..
T Consensus 133 k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk 173 (280)
T KOG4591|consen 133 KEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIK 173 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHH
Confidence 554 578999999999999999999999999999888865
No 10
>KOG4682|consensus
Probab=99.34 E-value=2e-12 Score=106.81 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=100.5
Q ss_pred HHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeC----CCCHHHHHHHHHHHcCCcccC
Q psy2227 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLK----DMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 5 l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~----~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++++.+|..+||.+.+-|++++.||.-| ..|+||++||.+ .|+....|.+. .++.++|..++.-+|.+++.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 46788999999999999999999999999 678999999965 45555555553 499999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
..+.+..++.+|.++++++|.+.|.+-|.+.++..++..
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~ 177 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACG 177 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhH
Confidence 999999999999999999999999999999999887764
No 11
>KOG0783|consensus
Probab=99.02 E-value=1.5e-10 Score=102.84 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=75.7
Q ss_pred cceEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHHHHHcC-CcccC-----CcCcHHH
Q psy2227 15 VDVTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQ--LGTHPLIVLKDMKFSVLRSLIEFMYC-GETSI-----AEDNLPA 85 (175)
Q Consensus 15 ~Dv~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~--~~~~~~i~l~~v~~~~f~~lL~f~Yt-g~l~~-----~~~~v~~ 85 (175)
-|+.|.. +|+.++|||++|++|.+||..||... |...-.+....+..+.++.+|+|+|+ ++..+ ..+.+.+
T Consensus 711 ~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~ 790 (1267)
T KOG0783|consen 711 MDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFE 790 (1267)
T ss_pred eeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHH
Confidence 3555555 78889999999999999999999543 33333334445669999999999994 44432 2345677
Q ss_pred HHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 86 LLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 86 ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
++..|+.|-+.+|++.|+..|.+.++..++..
T Consensus 791 il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~ 822 (1267)
T KOG0783|consen 791 ILSIADQLLILELKSICEQSLLRKLNLKTLPT 822 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchHH
Confidence 88888888888888888888887777665543
No 12
>KOG2716|consensus
Probab=99.01 E-value=2.5e-09 Score=83.55 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=79.7
Q ss_pred eEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC---CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc--CcHHHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ---LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE--DNLPALLDAAK 91 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~---~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~--~~v~~ll~~A~ 91 (175)
|.+.|||..|+..+.-|.....+|+.|+... +.+.....+.|-+|.+|+.+|+||-.|.+.++. .++.+|++-|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 4578999999999999999999999999543 334444566678999999999999988877654 57889999999
Q ss_pred hcChhhHHHHHHHHhhCCCC
Q psy2227 92 FFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 92 ~l~i~~L~~~c~~~l~~~~~ 111 (175)
+|.+++|++.|...+.....
T Consensus 87 fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 87 FYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HhhHHHHHHHHHHHhhhccc
Confidence 99999999999998766543
No 13
>KOG0783|consensus
Probab=98.91 E-value=1.8e-09 Score=96.14 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=69.4
Q ss_pred CCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--CC------------CCCCeEEeCCCCHHHHHHHHHHHcCCcc
Q psy2227 11 NQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--QL------------GTHPLIVLKDMKFSVLRSLIEFMYCGET 76 (175)
Q Consensus 11 ~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~~------------~~~~~i~l~~v~~~~f~~lL~f~Ytg~l 76 (175)
...+.||+|.||++.|+|||.||+++|++|+++|.. +. .....|.++++.+..|+.+|.|+||+..
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 345789999999999999999999999999999921 11 1223456789999999999999999843
Q ss_pred --c------------CCcCcHHH-------HHHHHHhcChhhHHHHHH
Q psy2227 77 --S------------IAEDNLPA-------LLDAAKFFEVKGLASMSR 103 (175)
Q Consensus 77 --~------------~~~~~v~~-------ll~~A~~l~i~~L~~~c~ 103 (175)
+ +-.+|... +...++++++-+|.....
T Consensus 635 ~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 635 LSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred cCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 2 22234444 777777887777764443
No 14
>KOG2838|consensus
Probab=98.54 E-value=2.3e-07 Score=73.98 Aligned_cols=103 Identities=13% Similarity=0.185 Sum_probs=77.3
Q ss_pred HHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCe----EEeCCCCHHHHHHHHHHHcCCccc
Q psy2227 2 ATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPL----IVLKDMKFSVLRSLIEFMYCGETS 77 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~----i~l~~v~~~~f~~lL~f~Ytg~l~ 77 (175)
++++...++..-..|+-|.....-|++||++|++||++|+.+....+..... |..-+++-+.|+.+|.|+|+|+..
T Consensus 118 ~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 118 LKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred HHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc
Confidence 3455556666667799888888899999999999999999988655444333 333468899999999999999874
Q ss_pred ---CCcCcHHHHHHHHHhcChhhHHHHHHH
Q psy2227 78 ---IAEDNLPALLDAAKFFEVKGLASMSRD 104 (175)
Q Consensus 78 ---~~~~~v~~ll~~A~~l~i~~L~~~c~~ 104 (175)
....|+.-+..+..-|+.+.-.+.-.+
T Consensus 198 mEd~~fqn~diL~QL~edFG~~kkLd~Dmk 227 (401)
T KOG2838|consen 198 MEDLGFQNSDILEQLCEDFGCFKKLDEDMK 227 (401)
T ss_pred hhhcCCchHHHHHHHHHhhCCchhhhHHHH
Confidence 455677778888888887644443333
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.49 E-value=1.6e-07 Score=63.69 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=63.9
Q ss_pred eEEEeCCeEEEhhHHHHh-hcCHHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHHHHHcC-CcccCC-cCcHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLA-SCSPYFEGVLQKQ-----LGTHPLIVLKDMKFSVLRSLIEFMYC-GETSIA-EDNLPALLD 88 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLa-a~S~~F~~lf~~~-----~~~~~~i~l~~v~~~~f~~lL~f~Yt-g~l~~~-~~~v~~ll~ 88 (175)
|.+.|||+.|.+-+..|. ....+|..++... ......+.+ |-+|+.|+.+|+|+.+ |.+..+ ...+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 4456888888542 233445544 6899999999999999 777764 567889999
Q ss_pred HHHhcChhhH-HHHH
Q psy2227 89 AAKFFEVKGL-ASMS 102 (175)
Q Consensus 89 ~A~~l~i~~L-~~~c 102 (175)
-|++|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7665
No 16
>KOG2838|consensus
Probab=98.47 E-value=4e-07 Score=72.56 Aligned_cols=113 Identities=17% Similarity=0.306 Sum_probs=80.1
Q ss_pred HHHHHHHHCCCccceEEE-e-CC--------------eEEEhhHHHHhhcCHHHHHhhc-----CCC------CCCCeEE
Q psy2227 3 TRLGYLLENQILVDVTLM-C-NT--------------HTLKVHKVVLASCSPYFEGVLQ-----KQL------GTHPLIV 55 (175)
Q Consensus 3 ~~l~~l~~~~~~~Dv~i~-v-~~--------------~~f~aHr~vLaa~S~~F~~lf~-----~~~------~~~~~i~ 55 (175)
.++..+++...+.|+.|. + +| .+++||+.|.++||++|++++. +.+ .....|.
T Consensus 224 ~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIi 303 (401)
T KOG2838|consen 224 EDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRII 303 (401)
T ss_pred HHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceee
Confidence 356667777766665543 2 32 3689999999999999999982 222 1223566
Q ss_pred eCC-CCHHHH-HHHHHHHcCCcccCC----------------------------cCcHHHHHHHHHhcChhhHHHHHHHH
Q psy2227 56 LKD-MKFSVL-RSLIEFMYCGETSIA----------------------------EDNLPALLDAAKFFEVKGLASMSRDA 105 (175)
Q Consensus 56 l~~-v~~~~f-~~lL~f~Ytg~l~~~----------------------------~~~v~~ll~~A~~l~i~~L~~~c~~~ 105 (175)
+++ +=|..| -.+|.+|||+.+.++ .....++++.|.+|.+..|.+.|++.
T Consensus 304 fdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~V 383 (401)
T KOG2838|consen 304 FDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDV 383 (401)
T ss_pred chhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 445555 457899999886421 12467899999999999999999999
Q ss_pred hhCCCCCCcc
Q psy2227 106 MSQPTSTTTT 115 (175)
Q Consensus 106 l~~~~~~~~~ 115 (175)
+......++.
T Consensus 384 ir~acaadls 393 (401)
T KOG2838|consen 384 IRKACAADLS 393 (401)
T ss_pred HHhhhhhhcc
Confidence 9887655443
No 17
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=98.30 E-value=7.2e-07 Score=72.71 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=76.1
Q ss_pred eEEEhhHHHHhhcCHHHHHhhcC---CCCCCCeEEeC-CCCHHHHHHHHHHHcCCcccCCcCcHHHHHHHHHhcChhhHH
Q psy2227 24 HTLKVHKVVLASCSPYFEGVLQK---QLGTHPLIVLK-DMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLA 99 (175)
Q Consensus 24 ~~f~aHr~vLaa~S~~F~~lf~~---~~~~~~~i~l~-~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~~A~~l~i~~L~ 99 (175)
+.|.|.+.+|-..-.||+..+.. .....+.|+|. ..+...|+-+++|+....-.++.+|+..|+.-+++|+|+.|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 56999999999999999999943 33344456665 578899999999999988899999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q psy2227 100 SMSRDAMSQPTS 111 (175)
Q Consensus 100 ~~c~~~l~~~~~ 111 (175)
+.|..|+.+++.
T Consensus 94 e~cl~y~~~~~~ 105 (317)
T PF11822_consen 94 EECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHhHH
Confidence 999999877654
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.72 E-value=0.00021 Score=49.39 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=59.1
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCC---CCCCCeEEeCCCCHHHHHHHHHHHcCCc-----------c-----
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQ---LGTHPLIVLKDMKFSVLRSLIEFMYCGE-----------T----- 76 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~---~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-----------l----- 76 (175)
++++. +|..|.+.+.+. ..|..+++++... ......|.+++++...++.+++|++-.. +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 788999999986 6889999999431 1122479999999999999999996321 1
Q ss_pred ---cCCcCcHHHHHHHHHhcCh
Q psy2227 77 ---SIAEDNLPALLDAAKFFEV 95 (175)
Q Consensus 77 ---~~~~~~v~~ll~~A~~l~i 95 (175)
.++.+.+.+|+.+|++|+|
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678999999999875
No 19
>KOG2714|consensus
Probab=97.71 E-value=0.00019 Score=60.53 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=66.8
Q ss_pred eEEEeCCeEEEhhHHHHhhc--CHHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHH-HH
Q psy2227 17 VTLMCNTHTLKVHKVVLASC--SPYFEGVLQKQL---GTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLD-AA 90 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~--S~~F~~lf~~~~---~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~-~A 90 (175)
|.+.|||+.|...+.-|+-. -.+|.+++.++. +......+-|-+|+.|..+|+|+-||++++..-....++. -|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 67889999999999888654 479999995432 2233345567899999999999999999997666666666 99
Q ss_pred HhcChhhHHH
Q psy2227 91 KFFEVKGLAS 100 (175)
Q Consensus 91 ~~l~i~~L~~ 100 (175)
.+|++..+..
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999998876
No 20
>KOG1665|consensus
Probab=97.69 E-value=0.00017 Score=56.27 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred eEEEeCCeEEEhhHHHHhhcC--HHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC-CcCcHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCS--PYFEGVLQK----QLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI-AEDNLPALLDA 89 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S--~~F~~lf~~----~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~-~~~~v~~ll~~ 89 (175)
|.+.+||+.|...+.-|..+- ..+..||.+ .+.++.-..+.|-+|..|+.+|+|+..|.+.. +.-++..+++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 667889999988877776653 477888832 22333445667789999999999999999875 55689999999
Q ss_pred HHhcChhhHHHHHHH
Q psy2227 90 AKFFEVKGLASMSRD 104 (175)
Q Consensus 90 A~~l~i~~L~~~c~~ 104 (175)
|++|++-.|++.-++
T Consensus 91 Arff~i~sL~~hle~ 105 (302)
T KOG1665|consen 91 ARFFQILSLKDHLED 105 (302)
T ss_pred hhHHhhHhHHhHHhh
Confidence 999999999988777
No 21
>KOG1724|consensus
Probab=97.52 E-value=0.00053 Score=51.19 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCeEEEhhHHHHhhcCHHHHHhhcCCC--CCCCeEEeCCCCHHHHHHHHHHHcCCcc-----------------------
Q psy2227 22 NTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKDMKFSVLRSLIEFMYCGET----------------------- 76 (175)
Q Consensus 22 ~~~~f~aHr~vLaa~S~~F~~lf~~~~--~~~~~i~l~~v~~~~f~~lL~f~Ytg~l----------------------- 76 (175)
+|+.|.+-+.+. ..|..+++++.... .....|.++.|....|..+++|+|..+-
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 788899988875 66778888873221 1214789999999999999999986321
Q ss_pred --cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcc
Q psy2227 77 --SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTT 115 (175)
Q Consensus 77 --~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~ 115 (175)
.++...+.+++.+|.+|+|++|.+.|++.+.+.+...+.
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktp 132 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTP 132 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCH
Confidence 134457899999999999999999999988877655443
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.39 E-value=0.0014 Score=40.97 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.4
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMY 72 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Y 72 (175)
++++. +|+.|.+.+.+. ..|..+++|+.........|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 45555 788999999886 57999999995433333379999999999999999996
No 23
>KOG0511|consensus
Probab=97.32 E-value=0.00012 Score=60.98 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred cceEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHHHHHhc
Q psy2227 15 VDVTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFF 93 (175)
Q Consensus 15 ~Dv~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~~A~~l 93 (175)
.|+++.. +|+.|.|||..|+++|.+|...+..-.....+|+-..+-+..|..+|+|+|-..-.+-.+...+++.+..+|
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF 229 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKF 229 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhc
Confidence 4888876 677899999999999998877663322233345444577899999999999764444444556666666666
Q ss_pred ChhhH
Q psy2227 94 EVKGL 98 (175)
Q Consensus 94 ~i~~L 98 (175)
++..+
T Consensus 230 ~~e~l 234 (516)
T KOG0511|consen 230 SKEKL 234 (516)
T ss_pred cHHHh
Confidence 65544
No 24
>KOG0511|consensus
Probab=97.27 E-value=0.00033 Score=58.44 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=51.1
Q ss_pred eEEEhhHHHHhhcCHHHHHhhcC--CC-C---CCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHHHHHhcCh
Q psy2227 24 HTLKVHKVVLASCSPYFEGVLQK--QL-G---THPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95 (175)
Q Consensus 24 ~~f~aHr~vLaa~S~~F~~lf~~--~~-~---~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~~A~~l~i 95 (175)
.+++||+.+++ |..||+.||.+ .+ + ..+...++.......+.+++|+|+++..+..+-+.+++..|+++.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 35999999995 56799999943 22 1 1224456677889999999999999887776666666666655533
No 25
>KOG3473|consensus
Probab=96.94 E-value=0.0041 Score=42.23 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=60.4
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHH-----cCCc------ccCCc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK----QLGTHPLIVLKDMKFSVLRSLIEFM-----YCGE------TSIAE 80 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~----~~~~~~~i~l~~v~~~~f~~lL~f~-----Ytg~------l~~~~ 80 (175)
|+++. +|++|-.-|-+ |.-|+-.|+|+.+ .+....++.+++++...++.+.+|+ |++. .++++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 44444 66777776654 5678999999953 3456678999999999999999998 4444 35788
Q ss_pred CcHHHHHHHHHhcCh
Q psy2227 81 DNLPALLDAAKFFEV 95 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i 95 (175)
+.+.+||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 899999999999863
No 26
>KOG2715|consensus
Probab=96.93 E-value=0.0028 Score=47.39 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred eEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ------LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAA 90 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~------~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll~~A 90 (175)
|.+.|||..|-..|.-|..-+.-|...|... ..+...-.+.|-+|.-|..+|+|+-.|++-++.-.=..+|.-|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EA 102 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEA 102 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhh
Confidence 5567899999999999988886666665221 1223334666789999999999999999998884445699999
Q ss_pred HhcChhhHHHHHHHHhhCCC
Q psy2227 91 KFFEVKGLASMSRDAMSQPT 110 (175)
Q Consensus 91 ~~l~i~~L~~~c~~~l~~~~ 110 (175)
++|+++.|.....+-|.+..
T Consensus 103 efyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 103 EFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hccCChHHHHHHHHHHHHHh
Confidence 99999999988887776654
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.005 Score=44.03 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=72.8
Q ss_pred eEEE-eCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcc-------------------
Q psy2227 17 VTLM-CNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGET------------------- 76 (175)
Q Consensus 17 v~i~-v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l------------------- 76 (175)
+.+. .+|..|.+.+.+ |-+|-..++|+.......-.|..+.|....|..+++|+-..+-
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~ 82 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF 82 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence 4444 477888887765 6889999998854333333467778999999999999964221
Q ss_pred ------cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcc
Q psy2227 77 ------SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTT 115 (175)
Q Consensus 77 ------~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~ 115 (175)
.++.+.+.++.-+|.||.++.|.+.|++.+.+.+...+.
T Consensus 83 wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 83 WDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 134456788999999999999999999988877665443
No 28
>KOG1987|consensus
Probab=95.76 E-value=0.0014 Score=53.11 Aligned_cols=94 Identities=22% Similarity=0.173 Sum_probs=73.1
Q ss_pred CeEEEhhHHHHhhcCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHH---HHHHHHHhcChhh
Q psy2227 23 THTLKVHKVVLASCSPYFEGVLQKQ--LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLP---ALLDAAKFFEVKG 97 (175)
Q Consensus 23 ~~~f~aHr~vLaa~S~~F~~lf~~~--~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~---~ll~~A~~l~i~~ 97 (175)
++.+.+|+.+++++++.|+.++... ......+.+.+..+..++.+..|.|+..-.-..+.+. .++..+..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5569999999999999999998432 2223344677889999999999999976544444443 7888999999999
Q ss_pred HHHHHHHHhhCCCCCCccc
Q psy2227 98 LASMSRDAMSQPTSTTTTG 116 (175)
Q Consensus 98 L~~~c~~~l~~~~~~~~~~ 116 (175)
++..|...+...+...+..
T Consensus 189 lk~~~~~~l~~~~~~~~~~ 207 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVS 207 (297)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 9999999998877655543
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.75 E-value=0.07 Score=34.81 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=30.2
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcc
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTT 115 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~ 115 (175)
.++.+.+.+|+.+|.+|+|+.|.+.|.+++...+...++
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~ 48 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSP 48 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-H
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCH
Confidence 346678999999999999999999999998877765443
No 30
>KOG2723|consensus
Probab=92.67 E-value=0.32 Score=38.12 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=60.8
Q ss_pred Cccce-EEEeCCeEEEhhHHHHhh-cCHHHHHhhcCCC----CCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc--CcHH
Q psy2227 13 ILVDV-TLMCNTHTLKVHKVVLAS-CSPYFEGVLQKQL----GTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE--DNLP 84 (175)
Q Consensus 13 ~~~Dv-~i~v~~~~f~aHr~vLaa-~S~~F~~lf~~~~----~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~--~~v~ 84 (175)
.+.|+ .+-+||..|..-..-|.. .-..+..||++.. ....... .|-+...|+.+|+|+-|-.+.++. .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~f-IDRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYF-IDRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEE-EcCCcchHHHHHHHhcccccccchhhhhHH
Confidence 34554 456777766654443433 3446677775421 1112233 245778899999999996665555 6889
Q ss_pred HHHHHHHhcChhhHHHHHHHHh
Q psy2227 85 ALLDAAKFFEVKGLASMSRDAM 106 (175)
Q Consensus 85 ~ll~~A~~l~i~~L~~~c~~~l 106 (175)
.+.+.|++|+++.+.....+-.
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHHHHHHHccccHHHHHhccc
Confidence 9999999999998887665543
No 31
>KOG3840|consensus
Probab=87.37 E-value=1.1 Score=36.84 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=57.1
Q ss_pred ceEEEeCCeEEEhhHHHHhhc-CHHHHHhhcC-----CCCCCCeEEeC-CCCHHHHHHHHHHHcCCcccCCc-CcHHHHH
Q psy2227 16 DVTLMCNTHTLKVHKVVLASC-SPYFEGVLQK-----QLGTHPLIVLK-DMKFSVLRSLIEFMYCGETSIAE-DNLPALL 87 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~-S~~F~~lf~~-----~~~~~~~i~l~-~v~~~~f~~lL~f~Ytg~l~~~~-~~v~~ll 87 (175)
-++..+++..|-.-+.+|.+. -...-.||.+ .+....+.++- +++...|+.+|+|--+|.+.-+. -.+.+|.
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 366677888888888888654 2344555532 23444566665 69999999999999999986543 4677888
Q ss_pred HHHHhcChh
Q psy2227 88 DAAKFFEVK 96 (175)
Q Consensus 88 ~~A~~l~i~ 96 (175)
++++||-|+
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 888887553
No 32
>KOG3713|consensus
Probab=83.25 E-value=7.8 Score=33.84 Aligned_cols=93 Identities=9% Similarity=0.027 Sum_probs=57.2
Q ss_pred ceEEEeCCeEEEhhHHHHhhcCH-HHHHhhc------------CCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCc
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCSP-YFEGVLQ------------KQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDN 82 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S~-~F~~lf~------------~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~ 82 (175)
-|.+.|||..+...+..|...-. -+..+.. .-.....+.. -|-+|..|..+++|.+||++....+-
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Eyf-FDR~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYF-FDRHPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred EEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeee-eccChHHHHHHHHHHhcCeecccccc
Confidence 46778899988887777755211 1111111 0011122333 35689999999999999999887764
Q ss_pred -HHHHHHHHHhcChhhH-HHHH-HHHhhCC
Q psy2227 83 -LPALLDAAKFFEVKGL-ASMS-RDAMSQP 109 (175)
Q Consensus 83 -v~~ll~~A~~l~i~~L-~~~c-~~~l~~~ 109 (175)
.....+--+||++++. .+.| +....+.
T Consensus 111 C~~~F~eEL~yWgI~~~~le~CC~~~~~~~ 140 (477)
T KOG3713|consen 111 CPLSFEEELDYWGIDEAHLESCCWMRYRQR 140 (477)
T ss_pred chHHHHHHHHHhCCChhhhhHHhHHHHhhc
Confidence 3456677789998643 3444 4444443
No 33
>KOG4390|consensus
Probab=76.44 E-value=10 Score=32.51 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred eEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCC------CCCeEEeCCCCHHHHHHHHHHHcCCcccCCcCcHHHHH--H
Q psy2227 17 VTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLG------THPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALL--D 88 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~------~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~~v~~ll--~ 88 (175)
+.+.+.|+.|...|.-|... =+.+++..++ +..+ .+-|-+|+.|+.+|+|--||++..+.++...-+ +
T Consensus 42 lvlNvSGrRFeTWknTLery---PdTLLGSsEkeFFy~~dt~e-YFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLERY---PDTLLGSSEKEFFYDEDTGE-YFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred EEEeccccchhHHHhHHHhC---chhhhCCcchheeecCCccc-ccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 55667999999999998543 3455544332 1122 334679999999999999999988876543322 3
Q ss_pred HHHhcChhhHHHHHH
Q psy2227 89 AAKFFEVKGLASMSR 103 (175)
Q Consensus 89 ~A~~l~i~~L~~~c~ 103 (175)
+|-+=-|++++-.|+
T Consensus 118 LaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCC 132 (632)
T ss_pred hhHhcccHHHHhhhh
Confidence 343334788887764
No 34
>PHA02790 Kelch-like protein; Provisional
Probab=75.47 E-value=5.1 Score=34.90 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHHcCCcccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCC
Q psy2227 66 SLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTST 112 (175)
Q Consensus 66 ~lL~f~Ytg~l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~ 112 (175)
...+|+-. .++.+|..+++.+|+.|++++|.+.+.+|+.+++..
T Consensus 111 ~C~~fL~~---~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~ 154 (480)
T PHA02790 111 TCINFILR---DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLE 154 (480)
T ss_pred HHHHHHHh---hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHH
Confidence 33445533 688899999999999999999999999998877653
No 35
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=70.33 E-value=5.8 Score=26.22 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=24.1
Q ss_pred HHHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 84 PALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 84 ~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
.+++..|..|++++|.+.|.+|+..++.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~ 29 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFN 29 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
No 36
>KOG4350|consensus
Probab=69.36 E-value=4.4 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.0
Q ss_pred CCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCC
Q psy2227 78 IAEDNLPALLDAAKFFEVKGLASMSRDAMSQPT 110 (175)
Q Consensus 78 ~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~ 110 (175)
+..+|+.-++.+|..|++++|.+.|..|+.++-
T Consensus 145 L~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA 177 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNA 177 (620)
T ss_pred HcccceeeeeeHHHHhcchHHHHHHHHHHhcCH
Confidence 556788889999999999999999999997653
No 37
>KOG3863|consensus
Probab=68.16 E-value=0.72 Score=41.15 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhc
Q psy2227 2 ATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQ 45 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~ 45 (175)
+..++.+|+....||+++.+.++.|++|| ++.||.....
T Consensus 2 ~~~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~ 40 (604)
T KOG3863|consen 2 LLSLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIV 40 (604)
T ss_pred CccccccccccccchhHHHHhccccccee-----ccchhhhhhc
Confidence 45678899999999999999999999999 7889977663
No 38
>KOG4682|consensus
Probab=65.76 E-value=4 Score=34.93 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=31.1
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPT 110 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~ 110 (175)
.++++++...+++|.+|++..+++.|.+++..++
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999987655
No 39
>PHA03098 kelch-like protein; Provisional
Probab=62.69 E-value=10 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=30.7
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPT 110 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~ 110 (175)
.++.+|..+++.+|+.|++++|.+.|.+|+.+++
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf 137 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNI 137 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999987655
No 40
>KOG1778|consensus
Probab=55.22 E-value=9.2 Score=31.78 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=59.6
Q ss_pred EEEeCCeEEEhhHHHHhhcCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHHHHHcCCc--------------------
Q psy2227 18 TLMCNTHTLKVHKVVLASCSPYFEGVLQKQ--LGTHPLIVLKDMKFSVLRSLIEFMYCGE-------------------- 75 (175)
Q Consensus 18 ~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~--~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-------------------- 75 (175)
++..+...+.+|+.+|+..|+.|....... ......+.+..++...+..+.+++|...
T Consensus 30 ~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~ek~e~~~~~ihll~~~~~~~ 109 (319)
T KOG1778|consen 30 IVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSSLEKHEMVFFDIHLLALSHVYV 109 (319)
T ss_pred hhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccchhhhHHHHHHHHHHhhhhhhh
Confidence 334455679999999999999887766221 1122234444556666666666666541
Q ss_pred c--------------cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhC
Q psy2227 76 T--------------SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQ 108 (175)
Q Consensus 76 l--------------~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~ 108 (175)
+ .++..++..++..+..|+...+...+...+..
T Consensus 110 v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~ 156 (319)
T KOG1778|consen 110 VPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIML 156 (319)
T ss_pred ccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 0 02334688899999999999998887765544
No 41
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=54.75 E-value=13 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=23.2
Q ss_pred HHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 85 ALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 85 ~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
+++.+|+.|+.++|.+.|.+|+.+++.
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~ 29 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFL 29 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 577889999999999999999887643
No 42
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=49.54 E-value=11 Score=26.71 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=35.9
Q ss_pred CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeC-CC--CHHHHHHHHHHHcCCcc
Q psy2227 22 NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLK-DM--KFSVLRSLIEFMYCGET 76 (175)
Q Consensus 22 ~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~-~v--~~~~f~~lL~f~Ytg~l 76 (175)
++..+.+|-.+++.+||.+...=..-+-....+..+ |+ -.+.....|+++|.|.-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s~ 77 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDSK 77 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCCC
Confidence 567899999999999998853321111112223333 33 35788999999999753
No 43
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=46.12 E-value=25 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.8
Q ss_pred HHHHHHHCCCccceEEEe
Q psy2227 4 RLGYLLENQILVDVTLMC 21 (175)
Q Consensus 4 ~l~~l~~~~~~~Dv~i~v 21 (175)
.+..+++.|-+||+.|..
T Consensus 35 vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 35 VLEWLRENGGYCDCEVLY 52 (53)
T ss_pred HHHHHHHcCCCcceeeec
Confidence 456789999999998864
No 44
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=31.57 E-value=1.7e+02 Score=19.88 Aligned_cols=52 Identities=12% Similarity=0.269 Sum_probs=34.9
Q ss_pred eEEEeCC--eEEEhhHHHHhhcCHHHHHhhcCC-----CCCCCeEEeCCCCHHHHHHHHHHH
Q psy2227 17 VTLMCNT--HTLKVHKVVLASCSPYFEGVLQKQ-----LGTHPLIVLKDMKFSVLRSLIEFM 71 (175)
Q Consensus 17 v~i~v~~--~~f~aHr~vLaa~S~~F~~lf~~~-----~~~~~~i~l~~v~~~~f~~lL~f~ 71 (175)
+.+.||+ +.|-+....| ..|.|+.++... -.....|.++ ++...|+.+|..+
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4555655 5677777776 358999999321 1234456666 7888999998765
No 45
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=25.88 E-value=91 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHCCCccceEEEeCCeEEEhh
Q psy2227 8 LLENQILVDVTLMCNTHTLKVH 29 (175)
Q Consensus 8 l~~~~~~~Dv~i~v~~~~f~aH 29 (175)
+.-.+.+|++.++.|+.++.|.
T Consensus 19 ~l~r~sLCEl~i~~g~~evaA~ 40 (43)
T PF01848_consen 19 WLTRDSLCELRIKDGNTEVAAF 40 (43)
T ss_pred HHhccCcEEEEEecCCEEEEEE
Confidence 4567899999999999998764
No 46
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.33 E-value=35 Score=18.80 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=6.4
Q ss_pred eCCCCHHHHHHHHH
Q psy2227 56 LKDMKFSVLRSLIE 69 (175)
Q Consensus 56 l~~v~~~~f~~lL~ 69 (175)
.++++++-.+.++.
T Consensus 19 fd~v~~~Ka~~im~ 32 (36)
T PF06200_consen 19 FDDVPPDKAQEIML 32 (36)
T ss_pred eCCCCHHHHHHHHH
Confidence 34455554444443
No 47
>PRK09738 small toxic polypeptide; Provisional
Probab=23.10 E-value=95 Score=18.62 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHCCCccceEEEeCCeEEEhh
Q psy2227 8 LLENQILVDVTLMCNTHTLKVH 29 (175)
Q Consensus 8 l~~~~~~~Dv~i~v~~~~f~aH 29 (175)
+...+.+|++.++-|+.++.|.
T Consensus 24 ~l~r~sLCEl~i~~g~~evaA~ 45 (52)
T PRK09738 24 YLTRKSLCELRYRDGDREVAAF 45 (52)
T ss_pred HHccCCceEEEEecCCEEEEEE
Confidence 4567889999999999998764
No 48
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=22.47 E-value=32 Score=18.96 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcCC
Q psy2227 163 LFLMSILLALIPV 175 (175)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (175)
.++..|.|.||||
T Consensus 4 ~lL~GiVLGlipv 16 (37)
T CHL00008 4 VLLFGIVLGLIPI 16 (37)
T ss_pred hhhhhHHHHhHHH
Confidence 3567888888885
No 49
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=21.21 E-value=35 Score=18.79 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=9.8
Q ss_pred HHHHHHHHhhcCC
Q psy2227 163 LFLMSILLALIPV 175 (175)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (175)
.++..|.|.|||+
T Consensus 4 plL~GiVLGlipi 16 (37)
T PRK00665 4 PLLCGIVLGLIPV 16 (37)
T ss_pred hhhhhHHHHhHHH
Confidence 3567888888885
Done!