Query psy2227
Match_columns 175
No_of_seqs 245 out of 1307
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:25:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 100.0 6.3E-30 2.1E-34 185.3 12.2 114 1-114 23-137 (138)
2 3b84_A Zinc finger and BTB dom 100.0 8.9E-30 3.1E-34 180.1 10.4 107 1-109 11-117 (119)
3 2yy9_A Zinc finger and BTB dom 100.0 7.7E-30 2.6E-34 184.3 10.1 110 1-112 12-121 (135)
4 2vpk_A Myoneurin; transcriptio 100.0 3.4E-29 1.1E-33 176.1 12.2 106 1-108 9-116 (116)
5 2if5_A Zinc finger and BTB dom 100.0 5.5E-29 1.9E-33 175.9 12.4 107 1-107 12-120 (120)
6 1r29_A B-cell lymphoma 6 prote 100.0 9E-29 3.1E-33 176.5 13.3 109 1-109 16-126 (127)
7 1buo_A POZ domain, protein (pr 100.0 6.8E-29 2.3E-33 175.9 11.0 106 1-109 15-120 (121)
8 2q81_A MIZ-1 protein; BTB/POZ 100.0 7.2E-29 2.5E-33 175.4 9.2 104 1-107 14-117 (119)
9 3ohu_A Transcription regulator 100.0 2.2E-29 7.5E-34 179.2 5.9 106 1-106 19-125 (125)
10 2ppi_A Gigaxonin; BTB domain, 100.0 1.5E-28 5.2E-33 179.4 10.5 107 1-107 34-144 (144)
11 3ga1_A Nucleus accumbens-assoc 100.0 6.3E-29 2.2E-33 178.0 7.7 107 1-109 20-127 (129)
12 2ihc_A Transcription regulator 100.0 3.7E-29 1.3E-33 178.1 5.3 107 1-107 16-123 (124)
13 2vkp_A BTB/POZ domain-containi 99.9 6.4E-28 2.2E-32 167.5 9.7 102 8-110 2-109 (109)
14 3htm_A Speckle-type POZ protei 99.9 1.9E-27 6.4E-32 177.2 11.6 118 1-118 21-140 (172)
15 4eoz_A Speckle-type POZ protei 99.9 3.2E-28 1.1E-32 176.7 7.0 123 1-123 12-136 (145)
16 3m5b_A Zinc finger and BTB dom 99.9 3.8E-27 1.3E-31 166.9 7.9 98 2-108 20-117 (119)
17 3hve_A Gigaxonin; ubiquitin, c 99.9 7.9E-27 2.7E-31 184.6 9.9 117 1-117 18-138 (256)
18 3fkc_A Transcriptional regulat 99.9 3.2E-26 1.1E-30 161.2 10.0 97 1-100 18-115 (116)
19 3i3n_A Kelch-like protein 11; 99.9 2.1E-26 7.3E-31 184.2 6.9 118 1-118 19-147 (279)
20 3hqi_A Speckle-type POZ protei 99.9 3.8E-25 1.3E-29 179.3 11.7 118 2-119 162-281 (312)
21 2ast_A S-phase kinase-associat 99.6 9.8E-16 3.4E-20 113.2 7.7 100 17-117 3-133 (159)
22 4ajy_C Transcription elongatio 99.4 4.3E-13 1.5E-17 91.1 8.7 78 17-95 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.4 2E-13 7E-18 98.8 6.0 97 17-116 4-127 (141)
24 2p1m_A SKP1-like protein 1A; F 99.3 3.9E-13 1.3E-17 99.3 1.1 99 17-117 6-132 (160)
25 3drz_A BTB/POZ domain-containi 99.0 2.6E-09 8.8E-14 73.6 10.2 92 16-108 7-106 (107)
26 3v7d_A Suppressor of kinetocho 98.9 6.6E-09 2.3E-13 77.2 8.4 99 16-115 8-138 (169)
27 2fnj_C Transcription elongatio 98.8 1E-08 3.4E-13 69.3 7.4 78 17-95 3-96 (96)
28 1hv2_A Elongin C, ELC1; protei 98.8 1.7E-08 5.9E-13 68.5 8.0 78 17-95 6-99 (99)
29 1vcb_B Protein (elongin C); tu 98.4 6.7E-07 2.3E-11 61.9 6.3 78 17-95 19-112 (112)
30 3drx_A BTB/POZ domain-containi 98.4 5E-07 1.7E-11 68.6 5.7 92 17-109 14-113 (202)
31 1s1g_A Potassium voltage-gated 97.8 3.5E-05 1.2E-09 54.1 6.0 83 16-102 14-104 (124)
32 1t1d_A Protein (potassium chan 97.7 6.6E-05 2.2E-09 50.7 6.0 86 17-103 3-95 (100)
33 3kvt_A Potassium channel prote 97.7 3.6E-05 1.2E-09 53.3 4.4 92 17-109 7-105 (115)
34 2nz0_B Potassium voltage-gated 97.6 0.00019 6.4E-09 51.4 6.7 79 16-98 36-121 (140)
35 1nn7_A Potassium channel KV4.2 97.5 4E-05 1.4E-09 52.2 2.7 82 17-102 2-91 (105)
36 2r9r_B Paddle chimera voltage 95.6 0.021 7.1E-07 49.0 6.3 83 16-99 53-141 (514)
37 2eqx_A Kelch repeat and BTB do 93.4 0.1 3.5E-06 34.8 4.3 38 74-111 4-41 (105)
38 3htm_A Speckle-type POZ protei 88.6 0.43 1.5E-05 33.9 3.9 36 77-112 131-166 (172)
39 3hqi_A Speckle-type POZ protei 83.3 1 3.5E-05 35.3 3.9 35 77-111 271-305 (312)
40 3i3n_A Kelch-like protein 11; 70.3 3.9 0.00013 31.4 3.7 35 77-111 138-172 (279)
41 3hve_A Gigaxonin; ubiquitin, c 69.7 3 0.0001 31.7 2.9 35 77-111 130-164 (256)
42 4h63_H Mediator of RNA polymer 32.5 23 0.00078 26.3 2.1 14 62-75 186-199 (200)
43 1pd7_B MAD1; PAH2, SIN3, eukar 24.6 30 0.001 16.8 1.0 14 81-94 3-16 (26)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.97 E-value=6.3e-30 Score=185.26 Aligned_cols=114 Identities=21% Similarity=0.387 Sum_probs=106.4
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeC-CCCHHHHHHHHHHHcCCcccCC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLK-DMKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~-~v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.........|.++ +++++.|+.+|+|+|||++.++
T Consensus 23 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~ 102 (138)
T 2z8h_A 23 VLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILS 102 (138)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccC
Confidence 467899999999999999999999999999999999999999997655555688995 8999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCc
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTT 114 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~ 114 (175)
.+++.+++.+|++|++++|++.|++||.+.++..|
T Consensus 103 ~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 103 KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999988765
No 2
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.96 E-value=8.9e-30 Score=180.08 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=98.9
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE 80 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~ 80 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.... ...|.+++++++.|+.+|+|+|||++.++.
T Consensus 11 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~ 88 (119)
T 3b84_A 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS 88 (119)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 467899999999999999999999999999999999999999996644 567999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcChhhHHHHHHHHhhCC
Q psy2227 81 DNLPALLDAAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 109 (175)
+++.+++.+|++|++++|++.|++||.+.
T Consensus 89 ~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 89 GNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999998764
No 3
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.96 E-value=7.7e-30 Score=184.28 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=97.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE 80 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~ 80 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.... ...|.+++++++.|+.+|+|+|||++.++.
T Consensus 12 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~ 89 (135)
T 2yy9_A 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTS 89 (135)
T ss_dssp HHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence 468899999999999999999999999999999999999999996543 567999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcChhhHHHHHHHHhhCCCCC
Q psy2227 81 DNLPALLDAAKFFEVKGLASMSRDAMSQPTST 112 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~ 112 (175)
+++.+++.+|++|+|++|++.|++||.+.+..
T Consensus 90 ~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 90 GNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999888754
No 4
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=176.11 Aligned_cols=106 Identities=25% Similarity=0.433 Sum_probs=98.7
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeC--CCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLK--DMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~--~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||... ....|.++ +++++.|+.+|+|+|||++.+
T Consensus 9 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~ 86 (116)
T 2vpk_A 9 LLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNL 86 (116)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCccc
Confidence 46789999999999999999999999999999999999999999665 35567788 999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhC
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQ 108 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~ 108 (175)
+.+++.+++.+|++|++++|++.|++||.+
T Consensus 87 ~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (116)
T 2vpk_A 87 DSWNVKEIHQAADYLKVEEVVTKCKIKMED 116 (116)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999863
No 5
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.96 E-value=5.5e-29 Score=175.92 Aligned_cols=107 Identities=21% Similarity=0.445 Sum_probs=98.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.+ .+.....|.+++++++.|+.+|+|+|||++.+
T Consensus 12 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~ 91 (120)
T 2if5_A 12 ILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTV 91 (120)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCcc
Confidence 3678999999999999999999999999999999999999999954 45667789999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhh
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMS 107 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~ 107 (175)
+.+++.+++.+|++|+|++|++.|++||.
T Consensus 92 ~~~~~~~ll~~A~~~~i~~L~~~C~~~L~ 120 (120)
T 2if5_A 92 STANVGDILSAARLLEIPAVSHVCADLLD 120 (120)
T ss_dssp CGGGHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 99999999999999999999999999983
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.96 E-value=9e-29 Score=176.52 Aligned_cols=109 Identities=24% Similarity=0.450 Sum_probs=101.3
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCC-CCCeEEe-CCCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLG-THPLIVL-KDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~-~~~~i~l-~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||..... ....|.+ ++++++.|+.+|+|+|||++.+
T Consensus 16 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~ 95 (127)
T 1r29_A 16 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNL 95 (127)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCc
Confidence 3678999999999999999999999999999999999999999954322 5678999 8999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhCC
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 109 (175)
+.+++.+++.+|++|++++|++.|+++|.++
T Consensus 96 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 96 REGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999764
No 7
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.96 E-value=6.8e-29 Score=175.92 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=99.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE 80 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~ 80 (175)
+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||... ...|.+++++++.|+.+|+|+|||++.++.
T Consensus 15 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~---~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~ 91 (121)
T 1buo_A 15 LLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKA 91 (121)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCG
T ss_pred HHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC---CcEEEeCCCCHHHHHHHHHhhcCCCcCCCH
Confidence 36789999999999999999999999999999999999999999653 557999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcChhhHHHHHHHHhhCC
Q psy2227 81 DNLPALLDAAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 109 (175)
+++.+++.+|++|++++|++.|+++|.+.
T Consensus 92 ~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 92 EDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp GGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999753
No 8
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.96 E-value=7.2e-29 Score=175.41 Aligned_cols=104 Identities=25% Similarity=0.435 Sum_probs=97.7
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAE 80 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~ 80 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.. ....|.+++++++.|+.+|+|+|||++.++.
T Consensus 14 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~ 90 (119)
T 2q81_A 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSP 90 (119)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCH
Confidence 4678999999999999999999999999999999999999999965 2456888899999999999999999999999
Q ss_pred CcHHHHHHHHHhcChhhHHHHHHHHhh
Q psy2227 81 DNLPALLDAAKFFEVKGLASMSRDAMS 107 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i~~L~~~c~~~l~ 107 (175)
+++.+++.+|++|+|++|++.|++|+.
T Consensus 91 ~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 91 ENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999985
No 9
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.95 E-value=2.2e-29 Score=179.25 Aligned_cols=106 Identities=24% Similarity=0.427 Sum_probs=99.5
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCC-CCHHHHHHHHHHHcCCcccCC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKD-MKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~-v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.........|.+++ ++++.|+.+|+|+|||++.++
T Consensus 19 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~ 98 (125)
T 3ohu_A 19 ILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLS 98 (125)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEEC
Confidence 4678999999999999999999999999999999999999999976665577899998 999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHh
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAM 106 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l 106 (175)
.+++.+++.+|++|++++|++.|++||
T Consensus 99 ~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 99 RENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp TTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999999998764
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=179.40 Aligned_cols=107 Identities=21% Similarity=0.430 Sum_probs=96.1
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--C--CCCCCeEEeCCCCHHHHHHHHHHHcCCcc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--Q--LGTHPLIVLKDMKFSVLRSLIEFMYCGET 76 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~--~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l 76 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.+ . +.....|.+++++++.|+.+|+|+|||++
T Consensus 34 l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 34 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI 113 (144)
T ss_dssp HHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999999999999999999999943 2 25667899999999999999999999999
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhh
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMS 107 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~ 107 (175)
.++.+++.+++.+|++|++++|++.|++||+
T Consensus 114 ~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 114 RLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 9999999999999999999999999999874
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.3e-29 Score=177.95 Aligned_cols=107 Identities=19% Similarity=0.375 Sum_probs=93.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeC-CCCHHHHHHHHHHHcCCcccCC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLK-DMKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~-~v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||... ....|.++ +++++.|+.+|+|+|||++.++
T Consensus 20 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~ 97 (129)
T 3ga1_A 20 ILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMN 97 (129)
T ss_dssp HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECC
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccC
Confidence 36789999999999999999999999999999999999999999654 56689996 8999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhhCC
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~ 109 (175)
.+++.+++.+|++|++++|++.|++||.+.
T Consensus 98 ~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 98 VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
No 12
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.95 E-value=3.7e-29 Score=178.11 Aligned_cols=107 Identities=21% Similarity=0.411 Sum_probs=97.6
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeC-CCCHHHHHHHHHHHcCCcccCC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLK-DMKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~-~v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.+.......|.++ +++++.|+.+|+|+|||++.++
T Consensus 16 l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~ 95 (124)
T 2ihc_A 16 VLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILS 95 (124)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccC
Confidence 467899999999999999999999999999999999999999997655555678884 8999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhh
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMS 107 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~ 107 (175)
.+++.+++.+|++|++++|++.|++||.
T Consensus 96 ~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 96 KENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp TTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999999999874
No 13
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=167.49 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=92.9
Q ss_pred HHHCCCccceEEEeCC----eEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC
Q psy2227 8 LLENQILVDVTLMCNT----HTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED 81 (175)
Q Consensus 8 l~~~~~~~Dv~i~v~~----~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~ 81 (175)
+++++.+|||+|.++| +.|+|||.||+++|+||++||.+ .++. ..|.+++++++.|+.+|+|+|||++.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5789999999999988 89999999999999999999954 3344 789999999999999999999999999999
Q ss_pred cHHHHHHHHHhcChhhHHHHHHHHhhCCC
Q psy2227 82 NLPALLDAAKFFEVKGLASMSRDAMSQPT 110 (175)
Q Consensus 82 ~v~~ll~~A~~l~i~~L~~~c~~~l~~~~ 110 (175)
++.+++.+|++|++++|++.|++||.+.+
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998653
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=177.21 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=109.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLKDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.. .+.....|.+++++++.|+.+|+|+|+|++.+
T Consensus 21 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~ 100 (172)
T 3htm_A 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPN 100 (172)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCC
Confidence 3678999999999999999999999999999999999999999954 45566799999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccccc
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNT 118 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~ 118 (175)
+.+++.+++.+|++|++++|++.|+++|.+.++..|+...
T Consensus 101 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~ 140 (172)
T 3htm_A 101 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 140 (172)
T ss_dssp GGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999999999999988887654
No 15
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=176.65 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=98.4
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC--CCCCCeEEeCCCCHHHHHHHHHHHcCCcccC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ--LGTHPLIVLKDMKFSVLRSLIEFMYCGETSI 78 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~--~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~ 78 (175)
+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||... +.....|.+++++++.|+.+|+|+|||++.+
T Consensus 12 l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~ 91 (145)
T 4eoz_A 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPN 91 (145)
T ss_dssp HHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCC
Confidence 36789999999999999999999999999999999999999999543 3445689999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccccccccCc
Q psy2227 79 AEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNTVSTSK 123 (175)
Q Consensus 79 ~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~ 123 (175)
+.+++.+++.+|++|++++|++.|+++|.+.++.+|+......+.
T Consensus 92 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~ 136 (145)
T 4eoz_A 92 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILAD 136 (145)
T ss_dssp GGGTHHHHHHHHHHTTCHHHHHHHHCC------------------
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888876544433
No 16
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.94 E-value=3.8e-27 Score=166.89 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=89.0
Q ss_pred HHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC
Q psy2227 2 ATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED 81 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~ 81 (175)
++.|+ |+++.+|||+|.++|+.|+|||.||+++|+||++ ....|.+++++++.|+.+|+|+|||++.++.+
T Consensus 20 l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~ 90 (119)
T 3m5b_A 20 VQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR-------RGQWALGEGISPSTFAQLLNFVYGESVELQPG 90 (119)
T ss_dssp HHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGG
T ss_pred HHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence 34554 7889999999999999999999999999999974 34578999999999999999999999999999
Q ss_pred cHHHHHHHHHhcChhhHHHHHHHHhhC
Q psy2227 82 NLPALLDAAKFFEVKGLASMSRDAMSQ 108 (175)
Q Consensus 82 ~v~~ll~~A~~l~i~~L~~~c~~~l~~ 108 (175)
++.+++.+|++|++++|++.|++++.+
T Consensus 91 ~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 91 ELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp GHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999999999999999999876
No 17
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=7.9e-27 Score=184.56 Aligned_cols=117 Identities=20% Similarity=0.376 Sum_probs=102.8
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC----CCCCCeEEeCCCCHHHHHHHHHHHcCCcc
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ----LGTHPLIVLKDMKFSVLRSLIEFMYCGET 76 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~----~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l 76 (175)
+++.|+++|+++.+|||+|.+||+.|+|||.||+++|+||++||.+. +.....|.++++++++|+.+|+|+|||++
T Consensus 18 l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI 97 (256)
T ss_dssp HHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC
Confidence 36789999999999999999999999999999999999999999542 45667899999999999999999999999
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
.++.+++.+++.+|++|++++|++.|++||.+.++.+|+..
T Consensus 98 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~ 138 (256)
T 3hve_A 98 RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG 138 (256)
T ss_dssp CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence 99999999999999999999999999999999999888765
No 18
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.93 E-value=3.2e-26 Score=161.20 Aligned_cols=97 Identities=19% Similarity=0.416 Sum_probs=91.1
Q ss_pred CHHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCcc-cCC
Q psy2227 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGET-SIA 79 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l-~~~ 79 (175)
+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||+++|... ...|.+++++++.|+.+|+|+|||++ .++
T Consensus 18 l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~---~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~ 94 (116)
T 3fkc_A 18 LLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEIFAEILNYIYSSKIVRVR 94 (116)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHHHHHHHTTSCCCSCC
T ss_pred HHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHHHHHHhhcCCCcCCCC
Confidence 36789999999999999999999999999999999999999999664 56899999999999999999999999 799
Q ss_pred cCcHHHHHHHHHhcChhhHHH
Q psy2227 80 EDNLPALLDAAKFFEVKGLAS 100 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~ 100 (175)
.+++.+++.+|++|++++|++
T Consensus 95 ~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 95 SDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHHHhCccccCc
Confidence 999999999999999999974
No 19
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=2.1e-26 Score=184.25 Aligned_cols=118 Identities=17% Similarity=0.307 Sum_probs=105.1
Q ss_pred CHHHHHHHHHCCCccceEEEeC---CeEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeC------CCCHHHHHHHHH
Q psy2227 1 MATRLGYLLENQILVDVTLMCN---THTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLK------DMKFSVLRSLIE 69 (175)
Q Consensus 1 ll~~l~~l~~~~~~~Dv~i~v~---~~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~------~v~~~~f~~lL~ 69 (175)
+++.|+++|++|.+|||+|.+| |+.|+|||.||+++|+||++||.+ .++....|.++ ++++++|+.+|+
T Consensus 19 ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~ 98 (279)
T 3i3n_A 19 LSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIE 98 (279)
T ss_dssp HHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHH
Confidence 4678999999999999999998 999999999999999999999954 45666789998 899999999999
Q ss_pred HHcCCcccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccccc
Q psy2227 70 FMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNT 118 (175)
Q Consensus 70 f~Ytg~l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~ 118 (175)
|+|||++.++.+++.+++.+|++|++++|++.|++||.+.++..|+...
T Consensus 99 ~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 99 YMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp HHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred hhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 9999999999999999999999999999999999999999999887654
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=3.8e-25 Score=179.35 Aligned_cols=118 Identities=25% Similarity=0.411 Sum_probs=107.9
Q ss_pred HHHHHHHHHCCCccceEEEeCCeEEEhhHHHHhhcCHHHHHhhcC--CCCCCCeEEeCCCCHHHHHHHHHHHcCCcccCC
Q psy2227 2 ATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQK--QLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIA 79 (175)
Q Consensus 2 l~~l~~l~~~~~~~Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~--~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~ 79 (175)
.+.|.++++++.+|||+|.++|+.|+|||.|||++|+||++||.+ .+.....|.+++++++.|+.+|+|+|||++++.
T Consensus 162 ~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~ 241 (312)
T 3hqi_A 162 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL 241 (312)
T ss_dssp HHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTH
T ss_pred HHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCCh
Confidence 578999999999999999999999999999999999999999954 466678999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccccc
Q psy2227 80 EDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNTV 119 (175)
Q Consensus 80 ~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~ 119 (175)
.+++.+|+.+|++|++++|++.|+++|.+.++..++....
T Consensus 242 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l 281 (312)
T 3hqi_A 242 DKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 281 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999999999999999888876543
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.62 E-value=9.8e-16 Score=113.20 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=84.8
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC---C-CCCCCeEEeCCCCHHHHHHHHHHHcCCc----------------
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK---Q-LGTHPLIVLKDMKFSVLRSLIEFMYCGE---------------- 75 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~---~-~~~~~~i~l~~v~~~~f~~lL~f~Ytg~---------------- 75 (175)
|+++. +|+.|.+||.+ |+.|+||++||.. . +.....|.+++|+...++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 67765 79999999999 8999999999954 2 4445689999999999999999999987
Q ss_pred ----------ccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 76 ----------TSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 76 ----------l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
+.++.+++.+|+.+|++|+|++|.+.|++++...+...++..
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~ee 133 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 133 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 778889999999999999999999999999988877665543
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.44 E-value=4.3e-13 Score=91.10 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=65.3
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHHc-----C---Cccc---CCc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK----QLGTHPLIVLKDMKFSVLRSLIEFMY-----C---GETS---IAE 80 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~----~~~~~~~i~l~~v~~~~f~~lL~f~Y-----t---g~l~---~~~ 80 (175)
|+++. +|++|.+||.+ |+.|+||++||.. .+.....|.++++++..++.+++|+| + ++++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 55655 78999999999 9999999999943 33456789999999999999999999 5 6777 999
Q ss_pred CcHHHHHHHHHhcCh
Q psy2227 81 DNLPALLDAAKFFEV 95 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i 95 (175)
+++.+|+.+|++|++
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999974
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.42 E-value=2e-13 Score=98.82 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=83.8
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCc--------------------
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE-------------------- 75 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-------------------- 75 (175)
|+++. +|+.|.+||.+ |..|.+|++||.... ...|.+++|+...++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~ 80 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP 80 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence 66776 88999999998 899999999994321 4579999999999999999999755
Q ss_pred ------ccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCccc
Q psy2227 76 ------TSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTG 116 (175)
Q Consensus 76 ------l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~ 116 (175)
+.++.+++.+|+.+|++|+|++|.+.|++++...+...++.
T Consensus 81 ~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~e 127 (141)
T 1fs1_B 81 VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 127 (141)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHH
Confidence 56788899999999999999999999999998887665543
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.29 E-value=3.9e-13 Score=99.31 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=56.2
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHHHHHcCCc--------------------
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEFMYCGE-------------------- 75 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-------------------- 75 (175)
|+++. +|+.|.+||.+ |..|.+|++||.... ....|.+++|+...++.+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i 83 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC-VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDL 83 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-------------CCTTSCHHHHHHHHHC-------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC-CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchh
Confidence 56665 78999999999 889999999995432 33479999999999999999999865
Q ss_pred -------ccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcccc
Q psy2227 76 -------TSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGN 117 (175)
Q Consensus 76 -------l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~ 117 (175)
+.++.+++.+|+.+|++|+|++|.+.|++++...+...++..
T Consensus 84 ~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 132 (160)
T 2p1m_A 84 KAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEE 132 (160)
T ss_dssp -----------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 357788999999999999999999999999999887655543
No 25
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.03 E-value=2.6e-09 Score=73.60 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=74.7
Q ss_pred ceEEEeCCeEEEhhHHHHhhcC-HHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHH
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCS-PYFEGVLQKQ------LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALL 87 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S-~~F~~lf~~~------~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll 87 (175)
-|+|.|||+.|...+..|+... .+|..||... ......+.+ |-++..|+.+|+|+.+|++.++.+ ....++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 3678899999999999998764 4788888532 112334544 789999999999999999987654 457899
Q ss_pred HHHHhcChhhHHHHHHHHhhC
Q psy2227 88 DAAKFFEVKGLASMSRDAMSQ 108 (175)
Q Consensus 88 ~~A~~l~i~~L~~~c~~~l~~ 108 (175)
+-|++|++++|++.|++.|.+
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 26
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.88 E-value=6.6e-09 Score=77.17 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=78.1
Q ss_pred ceEEEe-CCeEEEhhHHHHhhcCHHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHHHHHcCCc-------------
Q psy2227 16 DVTLMC-NTHTLKVHKVVLASCSPYFEGVLQKQL------GTHPLIVLKDMKFSVLRSLIEFMYCGE------------- 75 (175)
Q Consensus 16 Dv~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~~~------~~~~~i~l~~v~~~~f~~lL~f~Ytg~------------- 75 (175)
-|+++. +|+.|.+++.+ |..|.+++.|+.... .....|.+++|+...++.+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466665 78899999998 688999999994311 223679999999999999999997532
Q ss_pred ------------ccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCCCcc
Q psy2227 76 ------------TSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTT 115 (175)
Q Consensus 76 ------------l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~ 115 (175)
+.++.+.+.+|+.+|+||+|++|.+.|++.+...+...++
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktp 138 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSP 138 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCH
Confidence 2356678999999999999999999999998766554443
No 27
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.84 E-value=1e-08 Score=69.27 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHHcCCc-----------ccCCc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK----QLGTHPLIVLKDMKFSVLRSLIEFMYCGE-----------TSIAE 80 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~----~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-----------l~~~~ 80 (175)
|+++. +|+.|.++|.+ |..|.++++|+.. .+.....|.+++|+...++.+++|+|... ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 56665 88999999997 8899999999943 23444689999999999999999998632 36788
Q ss_pred CcHHHHHHHHHhcCh
Q psy2227 81 DNLPALLDAAKFFEV 95 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i 95 (175)
+.+.+|+.+|++|++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 28
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.82 E-value=1.7e-08 Score=68.46 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=65.1
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC-CCCCCCeEEeCCCCHHHHHHHHHHHcCCc--------------ccCCc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK-QLGTHPLIVLKDMKFSVLRSLIEFMYCGE--------------TSIAE 80 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~-~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~--------------l~~~~ 80 (175)
|+++. +|+.|.++|.+ |..|.++++|+.. .+.....|.+++|+...++.+++|+|... ..++.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~ 84 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPT 84 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCH
Confidence 66766 89999999997 8899999999943 23344689999999999999999998632 35677
Q ss_pred CcHHHHHHHHHhcCh
Q psy2227 81 DNLPALLDAAKFFEV 95 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i 95 (175)
+.+.+|+.+|+||++
T Consensus 85 ~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 85 EMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.38 E-value=6.7e-07 Score=61.91 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=62.0
Q ss_pred eEEEe-CCeEEEhhHHHHhhcCHHHHHhhcC----CCCCCCeEEeCCCCHHHHHHHHHHHcCCc-----------ccCCc
Q psy2227 17 VTLMC-NTHTLKVHKVVLASCSPYFEGVLQK----QLGTHPLIVLKDMKFSVLRSLIEFMYCGE-----------TSIAE 80 (175)
Q Consensus 17 v~i~v-~~~~f~aHr~vLaa~S~~F~~lf~~----~~~~~~~i~l~~v~~~~f~~lL~f~Ytg~-----------l~~~~ 80 (175)
|+++. +|..|.++|.+ |..|..++.|+.. .+.....|.+++|+...++.+++|+|... ..++.
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 97 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 97 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence 66664 88999999995 6889999999953 13334589999999999999999997532 35777
Q ss_pred CcHHHHHHHHHhcCh
Q psy2227 81 DNLPALLDAAKFFEV 95 (175)
Q Consensus 81 ~~v~~ll~~A~~l~i 95 (175)
+.+.+|+.+|+||+|
T Consensus 98 ~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 98 EIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999975
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=98.37 E-value=5e-07 Score=68.55 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=73.2
Q ss_pred eEEEeCCeEEEhhHHHHhhcC-HHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCS-PYFEGVLQKQL------GTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALLD 88 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S-~~F~~lf~~~~------~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll~ 88 (175)
|.|.|||+.|...+..|.... .+|..||.... .....+. -|-++..|+.||+|+.+|++.++.+ ....++.
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyF-IDRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~e 92 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYL-IDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLE 92 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEE-ECSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEE-ecCChHHHHHHHHHhcCCccCCCCCCCHHHHHH
Confidence 677899999999999998753 37788884321 1233444 4689999999999999999988655 4578999
Q ss_pred HHHhcChhhHHHHHHHHhhCC
Q psy2227 89 AAKFFEVKGLASMSRDAMSQP 109 (175)
Q Consensus 89 ~A~~l~i~~L~~~c~~~l~~~ 109 (175)
-|++|++++|++.|.+.+.+.
T Consensus 93 EA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 93 EAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999999988643
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=97.83 E-value=3.5e-05 Score=54.14 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred ceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHHH
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ------LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALLD 88 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~------~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll~ 88 (175)
=|+|.|||+.|...+..|.... ..+++.. ......+. -|-++..|+.||+|+-+|++.++.+ .+..+++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~F-iDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYF-FDRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEE-ECSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEE-EcCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 4778899999999999997642 2233221 11233444 3679999999999999999987654 5788999
Q ss_pred HHHhcChhhHH-HHH
Q psy2227 89 AAKFFEVKGLA-SMS 102 (175)
Q Consensus 89 ~A~~l~i~~L~-~~c 102 (175)
-|++|+++.+. +.|
T Consensus 90 Ea~fy~i~~l~l~~c 104 (124)
T 1s1g_A 90 ELAFYGILPEIIGDC 104 (124)
T ss_dssp HHHHTTCCGGGBCHH
T ss_pred HHHHcCCChHHHHHH
Confidence 99999999873 444
No 32
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=97.74 E-value=6.6e-05 Score=50.73 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=61.4
Q ss_pred eEEEeCCeEEEhhHHHHhhcC-HHHHHhhcC---CCCCCCeEEeCCCCHHHHHHHHHHHcC-CcccCCcC-cHHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCS-PYFEGVLQK---QLGTHPLIVLKDMKFSVLRSLIEFMYC-GETSIAED-NLPALLDAA 90 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S-~~F~~lf~~---~~~~~~~i~l~~v~~~~f~~lL~f~Yt-g~l~~~~~-~v~~ll~~A 90 (175)
|++.|||+.|...+..|...- ..+..++.. .......+-+ |-++..|+.+|+|+-+ |++.++.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678999999999999996542 123333311 1123344554 6799999999999998 89877544 578899999
Q ss_pred HhcChhhHH-HHHH
Q psy2227 91 KFFEVKGLA-SMSR 103 (175)
Q Consensus 91 ~~l~i~~L~-~~c~ 103 (175)
++|++.++. +.|.
T Consensus 82 ~fy~i~~~~~~~~~ 95 (100)
T 1t1d_A 82 KFYELGENAFERYR 95 (100)
T ss_dssp HHTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 999997754 4443
No 33
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=97.71 E-value=3.6e-05 Score=53.34 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=67.0
Q ss_pred eEEEeCCeEEEhhHHHHhhcC-HHHHHhhcCCC---CCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCS-PYFEGVLQKQL---GTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALLDAAK 91 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S-~~F~~lf~~~~---~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll~~A~ 91 (175)
|+|.|||+.|...+..|.... .+|..|+.... .....+-+ |-++..|+.+|+|+.+|++.++.+ .+..+++-|+
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~ 85 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE 85 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH
Confidence 788999999999999998753 24555553211 22334444 679999999999999999987664 5788999999
Q ss_pred hcChhhHHHH--HHHHhhCC
Q psy2227 92 FFEVKGLASM--SRDAMSQP 109 (175)
Q Consensus 92 ~l~i~~L~~~--c~~~l~~~ 109 (175)
+|+++...-. |.....+.
T Consensus 86 fy~i~~~~l~~CC~~~~~~~ 105 (115)
T 3kvt_A 86 FWGLDSNQVEPCCWMTYTAH 105 (115)
T ss_dssp HHTCCGGGBCGGGSHHHHSC
T ss_pred HhCCChHHHHHHHHHHHHhc
Confidence 9999775422 44444444
No 34
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=97.57 E-value=0.00019 Score=51.39 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=60.0
Q ss_pred ceEEEeCCeEEEhhHHHHhhcCHHHHHhhcCC------CCCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHHH
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQ------LGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALLD 88 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~------~~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll~ 88 (175)
-|+|.|||+.|...+..|...- ..+++.. ......+. -|-++..|+.||+|+-+|++.++.+ .+..+++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yF-iDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYF-FDRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEE-ECSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEE-EeCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 4778899999999999997642 2333221 11233444 4679999999999999999987654 5888999
Q ss_pred HHHhcChhhH
Q psy2227 89 AAKFFEVKGL 98 (175)
Q Consensus 89 ~A~~l~i~~L 98 (175)
-|++|+|+.+
T Consensus 112 Ea~fy~i~~l 121 (140)
T 2nz0_B 112 ELAFYGILPE 121 (140)
T ss_dssp HHHHHTCCGG
T ss_pred HHHHcCCChH
Confidence 9999999887
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=97.54 E-value=4e-05 Score=52.24 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=60.6
Q ss_pred eEEEeCCeEEEhhHHHHhhcCHHHHHhhcCCC------CCCCeEEeCCCCHHHHHHHHHHHcCCcccCCcC-cHHHHHHH
Q psy2227 17 VTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL------GTHPLIVLKDMKFSVLRSLIEFMYCGETSIAED-NLPALLDA 89 (175)
Q Consensus 17 v~i~v~~~~f~aHr~vLaa~S~~F~~lf~~~~------~~~~~i~l~~v~~~~f~~lL~f~Ytg~l~~~~~-~v~~ll~~ 89 (175)
|++.|||+.|...+..|.... ..+++... .....+- -|-++..|+.+|+|+-+|++.++.+ .+..+++-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~F-iDRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYF-FDRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEE-ECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEE-EeCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 688999999999999997643 12332211 1223344 3679999999999999999987654 57889999
Q ss_pred HHhcChhhHH-HHH
Q psy2227 90 AKFFEVKGLA-SMS 102 (175)
Q Consensus 90 A~~l~i~~L~-~~c 102 (175)
|++|+++.+. +.|
T Consensus 78 a~fy~i~~l~~~~c 91 (105)
T 1nn7_A 78 LAFFGLIPEIIGDC 91 (105)
T ss_dssp HHHHTCCSCCBCHH
T ss_pred HHHcCCCHHHHHHH
Confidence 9999998863 444
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=95.60 E-value=0.021 Score=48.97 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=59.0
Q ss_pred ceEEEeCCeEEEhhHHHHhhcCH-HHHHhhc---CCCCCCCeEEeCCCCHHHHHHHHHHHcC-CcccCCcC-cHHHHHHH
Q psy2227 16 DVTLMCNTHTLKVHKVVLASCSP-YFEGVLQ---KQLGTHPLIVLKDMKFSVLRSLIEFMYC-GETSIAED-NLPALLDA 89 (175)
Q Consensus 16 Dv~i~v~~~~f~aHr~vLaa~S~-~F~~lf~---~~~~~~~~i~l~~v~~~~f~~lL~f~Yt-g~l~~~~~-~v~~ll~~ 89 (175)
-|.+.|||+.|...+..|...-. .+..++. .......++-+ |-++..|+.+|+|+.+ |++..+.+ ....+.+-
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 36778999999999999965321 1111111 11123344554 6899999999999999 99977655 56778999
Q ss_pred HHhcChhhHH
Q psy2227 90 AKFFEVKGLA 99 (175)
Q Consensus 90 A~~l~i~~L~ 99 (175)
|++|++.++.
T Consensus 132 ~~f~~i~~~~ 141 (514)
T 2r9r_B 132 IRFYELGEEA 141 (514)
T ss_dssp HHHTTCCHHH
T ss_pred HHhcCCCHHH
Confidence 9999998754
No 37
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.37 E-value=0.1 Score=34.79 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=33.9
Q ss_pred CcccCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 74 GETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 74 g~l~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
+.-.++.+|...++.+|+.|++++|.+.|.+|+.+++.
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999999988764
No 38
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=88.64 E-value=0.43 Score=33.93 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=31.6
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTST 112 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~ 112 (175)
.++.+|+..++..|+.|++++|++.|.+|+.+++..
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~ 166 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYHATD 166 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999987653
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=83.34 E-value=1 Score=35.34 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=31.4
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
.++.+++..++.+|+.|++++|++.|.+|+..++.
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999998764
No 40
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=70.31 E-value=3.9 Score=31.44 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.5
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
.++.+|+..++..|+.|++++|.+.|.+|+.++..
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 172 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFH 172 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999987653
No 41
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=69.69 E-value=3 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=30.9
Q ss_pred cCCcCcHHHHHHHHHhcChhhHHHHHHHHhhCCCC
Q psy2227 77 SIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTS 111 (175)
Q Consensus 77 ~~~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~ 111 (175)
.++.+|+..++..|+.|++++|.+.|.+|+.++..
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~ 164 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFR 164 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999876553
No 42
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=32.55 E-value=23 Score=26.33 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCc
Q psy2227 62 SVLRSLIEFMYCGE 75 (175)
Q Consensus 62 ~~f~~lL~f~Ytg~ 75 (175)
...+.+|+|||.|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 44678999999996
No 43
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.57 E-value=30 Score=16.81 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=11.7
Q ss_pred CcHHHHHHHHHhcC
Q psy2227 81 DNLPALLDAAKFFE 94 (175)
Q Consensus 81 ~~v~~ll~~A~~l~ 94 (175)
.+++.++++|+++.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 47888999999875
Done!