RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2227
(175 letters)
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 83.8 bits (208), Expect = 4e-21
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + ++ + + D
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 80
Query: 59 MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTT 114
++ V + ++ F+Y G+ + LL AA + ++ L M DA+ S
Sbjct: 81 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 136
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 83.0 bits (206), Expect = 5e-21
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + ++ + + D
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 59 MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASM 101
++ V + ++ F+Y G+ + LL AA + ++ L M
Sbjct: 72 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 114
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 80.7 bits (200), Expect = 2e-20
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
RL E L D T++ K H+ VLAS S YF + + + + +K
Sbjct: 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADG 71
Query: 64 LRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
+ L+EF+Y G ++ N+ + AA + +V
Sbjct: 72 FQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 79.9 bits (198), Expect = 3e-20
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 8 LLENQILVDVTLMC----NTHTLKVHKVVLASCSPYFEGVLQKQLG-THPLIVLKDMKFS 62
+ N+++ DV + T T+ HK VLA S F + L I + D++ +
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA 61
Query: 63 VLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASM 101
L+++MY E + D + A L AAK + V LA
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 80.8 bits (200), Expect = 3e-20
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFE----GVLQKQLGTHPLIVLKDM 59
L E D L+ + + V K +LA+ SPY K G+ I L+ +
Sbjct: 37 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 96
Query: 60 KFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
V+R ++++++ G+ + ED + ++ AA +
Sbjct: 97 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 132
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 79.6 bits (197), Expect = 7e-20
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
L E D TL K H VLA CS +F+ + GT +VL +
Sbjct: 15 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIY--GDGTGGSVVLPAGFAEI 72
Query: 64 LRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
L++F Y G ++ N +L AAK V
Sbjct: 73 FGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEA 107
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 79.2 bits (196), Expect = 7e-20
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 10 ENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIE 69
+ +L D T + + K HK VLA+CS YF+ + Q ++ L + L ++E
Sbjct: 23 QLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHLDISNAAGLGQVLE 79
Query: 70 FMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQ 108
FMY + S++ +N+ +L A F +++ + + S
Sbjct: 80 FMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSL 118
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 79.2 bits (196), Expect = 8e-20
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL-GTHPLIVLKDMKFS 62
L + +L DVT+ + H+ VLA+CS YF + Q G + + +++
Sbjct: 19 SLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVK 78
Query: 63 VLRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
LI+F Y + ++++N+ + +F V
Sbjct: 79 GFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 79.2 bits (196), Expect = 8e-20
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHP-LIVLKDMKFS 62
L + IL DVTL+ + H+ VLA+CS YF L Q + + +++
Sbjct: 22 GLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTAR 81
Query: 63 VLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
L++F Y + ++ +N+ ++ A+F + L
Sbjct: 82 GFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 81.5 bits (202), Expect = 2e-19
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFE----GVLQKQLGTHPLIVLKDM 59
L E D L+ + + V K +LA+ SPY K G+ I L+ +
Sbjct: 21 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 80
Query: 60 KFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
V+R ++++++ G+ + ED + ++ AA + L
Sbjct: 81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDL 119
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 78.0 bits (193), Expect = 2e-19
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
L E D TL K H VLA CS +F+ + G+ +VL +
Sbjct: 14 ELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLY--GDGSGGSVVLPAGFAEI 71
Query: 64 LRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
L++F Y G ++ N +L AA+ V
Sbjct: 72 FGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 78.5 bits (194), Expect = 2e-19
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIV-LKDMKFS 62
L + +L DVT++ + H+ VLA+CS YF + Q + +++
Sbjct: 26 SLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVK 85
Query: 63 VLRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
LI+F Y + +++DN+ + +F V
Sbjct: 86 GFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 77.6 bits (192), Expect = 3e-19
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKDMKF 61
L +L DV ++ H+ VLA+CS YF+ + + + +
Sbjct: 15 GLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSA 74
Query: 62 SVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
L +L++F Y +++ N+ +L AA+ E+ +
Sbjct: 75 EALTALMDFAYTATLTVSTANVGDILSAARLLEIPAV 111
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 77.3 bits (191), Expect = 4e-19
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
+ + L DV +M ++ H+ VLA S FE + + L +
Sbjct: 18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH---YTLDFLSPKT 74
Query: 64 LRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
+ ++E+ Y ++L LL AA+ E+
Sbjct: 75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 76.9 bits (190), Expect = 8e-19
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 10 ENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIE 69
+ DV+++ H K H+ VLA+ S YF + + + ++ + ++
Sbjct: 29 LQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAV-VELPAAVQPQSFQQILS 87
Query: 70 FMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTS 111
F Y G S+ + L+ A F +++ + + + +S
Sbjct: 88 FCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 76.5 bits (189), Expect = 9e-19
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLG--THPLIVLKDMKF 61
L L IL DV ++ + + HK VL +CS F + QL + + ++
Sbjct: 19 NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 78
Query: 62 SVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEV 95
L++FMY ++ E N+ A++ A + ++
Sbjct: 79 EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 76.2 bits (188), Expect = 9e-19
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 11 NQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEF 70
L D + + H +VLA S Q + + + S L+ F
Sbjct: 27 RPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW-------ALGEGISPSTFAQLLNF 79
Query: 71 MYCGETSIAEDNLPALLDAAKFFEVKGL 98
+Y + L L +AA+ V+ L
Sbjct: 80 VYGESVELQPGELRPLQEAARALGVQSL 107
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 74.2 bits (183), Expect = 5e-18
Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 4 RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
L + + DVT++ + HK +L++ S YF + ++ L ++ +
Sbjct: 21 SLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEI 77
Query: 64 LRSLIEFMYCGE-TSIAEDNLPALLDAAKFFEVKGLASM 101
++ ++Y + + D L L+ + + VK +A++
Sbjct: 78 FAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 75.7 bits (186), Expect = 5e-17
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 1 MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
+A LG L EN D L + HK +LA+ SP F + + ++ + + D
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 220
Query: 59 MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQPTSTTT 114
++ V + ++ F+Y G+ + LL AA + ++ L M DA+ S
Sbjct: 221 VEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 72.7 bits (179), Expect = 4e-16
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 4 RLGYLLENQILVDVTLMCNT---HTLKVHKVVLASCSPYFEGVLQKQL--GTHPLIVLKD 58
R + D+TL + H+ VLA+ + YF +L Q + ++
Sbjct: 22 RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRK 81
Query: 59 MKF------SVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGL 98
+ ++IE+MY G ++ ++ +L+ A F + L
Sbjct: 82 WSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRL 127
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.006
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 20/47 (42%)
Query: 45 QKQLGTHPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPAL-LDAA 90
+KQ LK ++ + L+ +Y A+D+ PAL + A
Sbjct: 18 EKQ-------ALKKLQ-ASLK-----LY------ADDSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.60
Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 51/179 (28%)
Query: 5 LGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFE-GVLQKQ---------LGTHPLI 54
LGY+ LV+ + +V + L FE L+ L +
Sbjct: 65 LGYVSS---LVEPS--KVGQFDQVLNLCLT----EFENCYLEGNDIHALAAKLLQENDTT 115
Query: 55 VLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMS----QPT 110
++K ++++ I + + + AL A +G A + ++ Q
Sbjct: 116 LVK--TKELIKNYITARIMAKRPFDKKSNSALFRAVG----EGNAQL----VAIFGGQ-- 163
Query: 111 STTTTGNTV----------STSKTNTTPNTSTSASTLSS-NEHTASSNTSITGSLAIAS 158
GNT T SA TLS T + T L I
Sbjct: 164 -----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D*
3ada_D*
Length = 99
Score = 28.2 bits (63), Expect = 0.64
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 65 RSLIEFMYCGETSIAEDNLPALLDAAKFFE 94
R+ EF Y GE +A P L ++
Sbjct: 12 RNENEFKYGGEAHVAYPADPHALSDKQWSR 41
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 27.6 bits (61), Expect = 2.4
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 107 SQPTSTTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITGS 153
+ PTS T G +T N P T + ++ +
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPK 49
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 27.0 bits (59), Expect = 4.7
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 103 RDAMSQPTSTTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITGSLAIASSKCL 162
+ + + T T + + +T S +A++ T G AI S +
Sbjct: 741 YGKPLYLCQISVSTHGPQGFVTLATADGRLAGTTYSDGSVSAAAGTDKNGIYAIFESATV 800
Query: 163 L 163
Sbjct: 801 Y 801
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 26.8 bits (59), Expect = 5.0
Identities = 8/73 (10%), Positives = 16/73 (21%), Gaps = 2/73 (2%)
Query: 98 LASMSRDAMSQPTSTTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITGSLAIA 157
S+ + N TPN + T + + +
Sbjct: 129 TNSLRMLQQKRWDEAAVNLAKSRWY--NQTPNRAKRVITTFRTGTWDAYAADEVWVVGMG 186
Query: 158 SSKCLLFLMSILL 170
L+ L +
Sbjct: 187 IVMSLIVLAIVFG 199
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 26.8 bits (58), Expect = 5.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 111 STTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITGS 153
T+G+T +T ++ + T T E T TS GS
Sbjct: 428 EKVTSGSTTTTRRSCSKTVTKTVIGPDGHKEVTKEVVTSEDGS 470
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet,
insertion domain, virus like particle; HET: C15; 3.30A
{Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A
2c6s_A 1vsz_N 3iyn_M 3izo_A
Length = 523
Score = 26.6 bits (58), Expect = 5.7
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 82 NLPALLDAAKFFEVKGLASMSRDAMSQPTSTTTTGNTVSTSKTNTTPNTSTSASTLSSNE 141
N+PALLD + AS+ D N+ S ++ N+ + N+
Sbjct: 234 NIPALLDVDAY-----QASLKDDTEQGGDGAGGGNNSGSGAEENSNAAAAAMQPVEDMND 288
Query: 142 HTASSNTSITGSLAIASSK 160
H +T T + +
Sbjct: 289 HAIRGDTFATRAEEKRAEA 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.126 0.345
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,248,374
Number of extensions: 115520
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 39
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)