RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2227
         (175 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 72.8 bits (178), Expect = 9e-18
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 4   RLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSV 63
           +   +     L DV +M ++     H+ VLA  S  FE              L  +    
Sbjct: 18  KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE---ILFHRNSQHYTLDFLSPKT 74

Query: 64  LRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAM 106
            + ++E+ Y        ++L  LL AA+  E++ L       +
Sbjct: 75  FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 117


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 69.4 bits (169), Expect = 2e-16
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 1   MATRLGYLLENQILVDVTLMCNTHTLKVHKVVLASCSPYFEGVLQKQLGTH--PLIVLKD 58
           +   L  L    IL DV ++ +    + HK VL +CS  F  +   QL  +   + +  +
Sbjct: 12  VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPE 71

Query: 59  MKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAM 106
           +       L++FMY    ++ E N+ A++  A + +++ +    R  +
Sbjct: 72  INPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
           10891]}
          Length = 1264

 Score = 27.2 bits (60), Expect = 1.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 108 QPTSTTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITGSLAI-----ASSKCL 162
           +   + + GN   T  T T P    S ST +S EHTA+++T +   L +          +
Sbjct: 661 RVNDSFSPGNDF-THMTTTFP----SGSTATSTEHTANNSTMMETFLTVWGPEHTDDPDV 715

Query: 163 LFLMS 167
           L LM 
Sbjct: 716 LRLMK 720


>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein
          AHSP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 24.1 bits (52), Expect = 4.8
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 26 LKVHKVVLASCSPYFEGVLQKQLGTHPLIVLKDMKFSVLRSLIEF 70
          LK +K ++++    F  +L +Q+    L+  +DM  +V+   + F
Sbjct: 3  LKANKDLISAGLKEFSVLLNQQVFNDALVSEEDMV-TVVEDWMNF 46


>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 25.3 bits (55), Expect = 5.4
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 50  THPLIVLKDMKFSVLRSLIEFMYCGETSIAEDNLPALLDAAKFFEVKGLASMSRDAMSQP 109
            HP   L D    +LR++ ++    ++   E N+P L+D                     
Sbjct: 158 LHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQG----------FWIGGHYAL 207

Query: 110 TSTTTTGNTVSTSKTNTTPNTSTSASTLSSNEHTASSNTSITG 152
           T   TT N V  S      N +            AS     + 
Sbjct: 208 TPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSA 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.126    0.345 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,506
Number of extensions: 19231
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 13
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)