Query psy2231
Match_columns 201
No_of_seqs 174 out of 1529
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:33:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 7.5E-23 2.6E-27 165.0 8.8 107 43-155 9-185 (192)
2 2xqn_T Testin, TESS; metal-bin 99.8 1E-21 3.4E-26 148.0 6.6 104 41-159 3-107 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.8 2.9E-21 1E-25 146.3 4.8 116 43-173 4-125 (131)
4 1rut_X Flinc4, fusion protein 99.8 2.3E-20 7.9E-25 150.0 4.8 105 43-153 7-139 (188)
5 2cup_A Skeletal muscle LIM-pro 99.8 7E-19 2.4E-23 127.4 8.1 86 42-133 6-93 (101)
6 2rgt_A Fusion of LIM/homeobox 99.8 2E-19 7E-24 142.1 5.6 97 43-146 8-129 (169)
7 2jtn_A LIM domain-binding prot 99.8 9.4E-19 3.2E-23 139.8 7.0 113 41-171 60-177 (182)
8 1j2o_A FLIN2, fusion of rhombo 99.7 3.6E-19 1.2E-23 132.2 2.4 98 43-146 5-108 (114)
9 1m3v_A FLIN4, fusion of the LI 99.7 3E-19 1E-23 134.1 0.4 94 42-146 6-116 (122)
10 1b8t_A Protein (CRP1); LIM dom 99.7 9.4E-18 3.2E-22 135.1 6.6 58 47-105 121-178 (192)
11 2dj7_A Actin-binding LIM prote 99.7 4.5E-17 1.5E-21 113.7 6.3 61 44-106 18-78 (80)
12 1rut_X Flinc4, fusion protein 99.6 9.7E-17 3.3E-21 128.8 5.7 95 10-107 4-136 (188)
13 2xjy_A Rhombotin-2; oncoprotei 99.6 6.2E-17 2.1E-21 122.3 3.9 90 12-104 3-130 (131)
14 2cu8_A Cysteine-rich protein 2 99.6 1.6E-16 5.5E-21 109.4 5.2 64 42-106 10-74 (76)
15 1iml_A CRIP, cysteine rich int 99.6 4.2E-16 1.4E-20 107.3 6.0 62 43-105 2-64 (76)
16 2d8y_A Eplin protein; LIM doma 99.6 1.9E-16 6.6E-21 112.8 4.0 61 44-105 18-78 (91)
17 2dar_A PDZ and LIM domain prot 99.6 7.1E-16 2.4E-20 109.6 6.4 64 41-106 25-88 (90)
18 1x68_A FHL5 protein; four-and- 99.6 7.3E-16 2.5E-20 106.1 6.0 66 40-106 4-72 (76)
19 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.5E-16 8.7E-21 109.7 2.8 66 43-111 9-74 (81)
20 1wyh_A SLIM 2, skeletal muscle 99.6 5.6E-16 1.9E-20 105.3 4.1 65 41-106 5-70 (72)
21 2cur_A Skeletal muscle LIM-pro 99.6 5.7E-16 2E-20 104.6 3.6 63 43-107 7-69 (69)
22 1x4k_A Skeletal muscle LIM-pro 99.6 7.8E-16 2.7E-20 104.6 4.3 66 40-106 4-70 (72)
23 2d8z_A Four and A half LIM dom 99.6 7.1E-16 2.4E-20 104.3 4.0 65 40-106 4-68 (70)
24 2co8_A NEDD9 interacting prote 99.6 2.7E-15 9.2E-20 105.0 6.8 61 44-105 18-80 (82)
25 1nyp_A Pinch protein; LIM doma 99.6 5E-16 1.7E-20 104.0 2.7 62 41-104 5-66 (66)
26 1x62_A C-terminal LIM domain p 99.6 4.1E-16 1.4E-20 108.3 2.2 61 44-106 18-78 (79)
27 2ehe_A Four and A half LIM dom 99.6 2.6E-15 8.7E-20 104.7 5.9 66 40-106 14-80 (82)
28 1x64_A Alpha-actinin-2 associa 99.6 3.6E-15 1.2E-19 105.7 5.6 62 43-106 27-88 (89)
29 1x4l_A Skeletal muscle LIM-pro 99.5 1.8E-15 6.2E-20 102.9 3.5 63 42-105 6-71 (72)
30 1x3h_A Leupaxin; paxillin fami 99.5 2E-15 6.9E-20 104.7 3.4 65 40-106 14-78 (80)
31 1g47_A Pinch protein; LIM doma 99.5 1.9E-15 6.6E-20 103.9 3.1 64 42-106 12-76 (77)
32 2dlo_A Thyroid receptor-intera 99.5 4.4E-15 1.5E-19 103.3 3.8 65 40-106 14-79 (81)
33 1x63_A Skeletal muscle LIM-pro 99.5 6.1E-15 2.1E-19 102.7 4.2 66 40-106 14-80 (82)
34 2rgt_A Fusion of LIM/homeobox 99.5 4.2E-15 1.4E-19 117.2 3.5 93 11-105 6-131 (169)
35 2cuq_A Four and A half LIM dom 99.5 6.9E-15 2.4E-19 101.9 4.1 65 40-106 14-78 (80)
36 2d8x_A Protein pinch; LIM doma 99.5 8.3E-15 2.8E-19 99.1 3.5 61 43-105 7-67 (70)
37 2jtn_A LIM domain-binding prot 99.5 1.1E-14 3.7E-19 116.2 4.4 89 10-100 59-180 (182)
38 2cor_A Pinch protein; LIM doma 99.5 1.7E-14 5.8E-19 100.2 4.8 61 42-105 16-76 (79)
39 2xqn_T Testin, TESS; metal-bin 99.5 6.9E-14 2.4E-18 104.9 8.5 109 70-196 5-118 (126)
40 1wig_A KIAA1808 protein; LIM d 99.5 2.7E-14 9.4E-19 97.7 4.6 63 40-104 4-67 (73)
41 1x61_A Thyroid receptor intera 99.4 3.1E-14 1.1E-18 96.7 2.8 60 42-102 6-66 (72)
42 3f6q_B LIM and senescent cell 99.4 3.6E-14 1.2E-18 95.9 2.5 62 40-102 10-72 (72)
43 2cup_A Skeletal muscle LIM-pro 99.4 5.8E-13 2E-17 96.0 8.9 86 70-172 7-96 (101)
44 2iyb_E Testin, TESS, TES; LIM 99.4 7.1E-14 2.4E-18 93.4 3.4 59 42-100 3-64 (65)
45 1x6a_A LIMK-2, LIM domain kina 99.4 6.9E-14 2.4E-18 97.1 3.2 65 40-106 14-80 (81)
46 2l4z_A DNA endonuclease RBBP8, 99.4 5.1E-14 1.7E-18 105.9 2.0 63 39-102 59-123 (123)
47 2egq_A FHL1 protein; LIM domai 99.4 1.1E-13 3.8E-18 95.1 2.9 60 40-100 14-77 (77)
48 1m3v_A FLIN4, fusion of the LI 99.3 5E-13 1.7E-17 100.0 3.4 98 70-197 7-108 (122)
49 2l3k_A Rhombotin-2, linker, LI 99.3 8.1E-13 2.8E-17 99.0 2.2 62 43-105 10-73 (123)
50 1v6g_A Actin binding LIM prote 99.2 4.7E-12 1.6E-16 87.8 3.8 63 40-104 14-77 (81)
51 2cuq_A Four and A half LIM dom 99.1 4.2E-11 1.4E-15 82.6 5.3 38 108-150 42-79 (80)
52 1x3h_A Leupaxin; paxillin fami 99.1 4.1E-11 1.4E-15 82.7 4.9 38 108-150 42-79 (80)
53 2ehe_A Four and A half LIM dom 99.1 2.9E-11 9.8E-16 83.9 3.8 38 108-150 44-81 (82)
54 1iml_A CRIP, cysteine rich int 99.1 2.4E-10 8.3E-15 78.1 7.6 71 70-157 2-73 (76)
55 1a7i_A QCRP2 (LIM1); LIM domai 99.0 7.3E-10 2.5E-14 76.6 6.8 69 69-154 8-76 (81)
56 2dlo_A Thyroid receptor-intera 99.0 3.4E-10 1.2E-14 78.3 4.7 63 70-150 17-80 (81)
57 1x63_A Skeletal muscle LIM-pro 99.0 5.3E-10 1.8E-14 77.3 5.7 64 70-150 17-81 (82)
58 1j2o_A FLIN2, fusion of rhombo 98.9 9.6E-10 3.3E-14 81.1 4.5 94 70-197 5-100 (114)
59 2cur_A Skeletal muscle LIM-pro 98.9 3.9E-09 1.3E-13 70.6 6.5 63 70-150 7-69 (69)
60 2cu8_A Cysteine-rich protein 2 98.9 5.5E-09 1.9E-13 71.2 7.1 64 70-150 11-75 (76)
61 1x68_A FHL5 protein; four-and- 98.9 4.5E-09 1.5E-13 71.7 6.3 66 70-152 7-75 (76)
62 1x6a_A LIMK-2, LIM domain kina 98.9 2.2E-09 7.7E-14 74.0 4.8 38 108-150 42-81 (81)
63 1wyh_A SLIM 2, skeletal muscle 98.8 7.7E-09 2.6E-13 69.6 7.0 64 70-150 7-71 (72)
64 1x4k_A Skeletal muscle LIM-pro 98.8 1.1E-08 3.6E-13 68.9 7.2 64 70-150 7-71 (72)
65 2d8z_A Four and A half LIM dom 98.8 8.6E-09 2.9E-13 69.0 6.2 63 70-150 7-69 (70)
66 2dj7_A Actin-binding LIM prote 98.8 1.1E-08 3.9E-13 70.7 6.6 64 69-150 16-79 (80)
67 2dar_A PDZ and LIM domain prot 98.8 1.7E-08 5.9E-13 71.1 7.0 63 70-150 27-89 (90)
68 1g47_A Pinch protein; LIM doma 98.8 1.2E-08 4.2E-13 69.4 6.0 63 70-149 13-76 (77)
69 2d8y_A Eplin protein; LIM doma 98.7 3.2E-08 1.1E-12 69.8 6.1 66 69-151 16-81 (91)
70 1nyp_A Pinch protein; LIM doma 98.7 3.4E-08 1.2E-12 65.3 5.5 60 70-147 7-66 (66)
71 1x4l_A Skeletal muscle LIM-pro 98.7 4.5E-08 1.5E-12 65.9 6.1 63 70-149 7-72 (72)
72 1x64_A Alpha-actinin-2 associa 98.7 4.6E-08 1.6E-12 68.7 6.4 64 69-150 26-89 (89)
73 1x62_A C-terminal LIM domain p 98.6 4.1E-08 1.4E-12 67.4 4.0 64 69-150 16-79 (79)
74 2d8x_A Protein pinch; LIM doma 98.6 1.6E-07 5.5E-12 62.7 6.8 62 70-149 7-68 (70)
75 2cor_A Pinch protein; LIM doma 98.5 2.1E-07 7.2E-12 64.0 5.7 62 69-149 16-77 (79)
76 1x61_A Thyroid receptor intera 98.5 2.6E-07 8.8E-12 62.0 5.9 63 70-150 7-70 (72)
77 2l3k_A Rhombotin-2, linker, LI 98.5 1.4E-07 4.8E-12 70.2 4.6 75 70-161 10-86 (123)
78 3f6q_B LIM and senescent cell 98.4 5.7E-07 1.9E-11 59.9 5.9 59 70-145 13-72 (72)
79 2egq_A FHL1 protein; LIM domai 98.4 1.3E-07 4.5E-12 64.3 2.1 64 127-196 2-71 (77)
80 2iyb_E Testin, TESS, TES; LIM 98.3 1.3E-06 4.3E-11 57.7 5.8 59 70-143 4-64 (65)
81 2co8_A NEDD9 interacting prote 98.3 5.9E-07 2E-11 62.1 3.9 63 70-149 17-81 (82)
82 2l4z_A DNA endonuclease RBBP8, 98.3 9.1E-07 3.1E-11 66.0 5.2 60 69-145 62-123 (123)
83 1wig_A KIAA1808 protein; LIM d 98.2 1.3E-06 4.4E-11 59.0 5.0 60 70-147 7-67 (73)
84 1v6g_A Actin binding LIM prote 98.1 1.4E-06 4.7E-11 59.9 3.5 61 135-196 5-67 (81)
85 1zfo_A LAsp-1; LIM domain, zin 97.9 3.5E-06 1.2E-10 47.9 0.9 27 43-69 5-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 79.6 0.33 1.1E-05 26.8 -0.2 21 167-187 6-26 (31)
87 2ct0_A Non-SMC element 1 homol 67.9 2.6 8.7E-05 28.0 1.9 26 44-69 18-43 (74)
88 1weu_A Inhibitor of growth fam 67.5 17 0.00058 25.0 6.1 43 45-100 39-86 (91)
89 2ecy_A TNF receptor-associated 63.6 7.4 0.00025 24.2 3.5 47 108-160 16-65 (66)
90 2ysl_A Tripartite motif-contai 62.1 8.2 0.00028 24.3 3.5 47 108-160 21-72 (73)
91 1t1h_A Gspef-atpub14, armadill 60.3 11 0.00038 24.1 4.0 46 108-159 9-57 (78)
92 2djb_A Polycomb group ring fin 56.5 9.5 0.00033 24.2 3.1 46 108-159 16-64 (72)
93 1e4u_A Transcriptional repress 52.3 8.3 0.00028 25.5 2.3 49 108-161 12-66 (78)
94 2xeu_A Ring finger protein 4; 51.4 12 0.00042 22.6 2.9 50 108-162 4-61 (64)
95 1jjd_A Metallothionein, SMTA; 50.2 12 0.0004 23.5 2.6 22 109-130 9-30 (55)
96 1g25_A CDK-activating kinase a 48.8 18 0.00061 22.3 3.4 49 108-161 4-59 (65)
97 2ct2_A Tripartite motif protei 46.6 13 0.00045 24.1 2.6 49 108-161 16-72 (88)
98 4ap4_A E3 ubiquitin ligase RNF 45.6 14 0.00047 25.9 2.8 83 59-161 31-129 (133)
99 3vk6_A E3 ubiquitin-protein li 44.1 22 0.00075 25.1 3.4 51 109-164 3-56 (101)
100 2gvi_A Conserved hypothetical 41.0 4.4 0.00015 32.0 -0.6 31 68-99 172-202 (204)
101 1jm7_B BARD1, BRCA1-associated 40.6 15 0.00053 25.6 2.3 45 108-158 23-68 (117)
102 2gvi_A Conserved hypothetical 40.6 15 0.00051 28.9 2.4 30 108-142 173-202 (204)
103 2d8t_A Dactylidin, ring finger 37.7 20 0.0007 22.4 2.4 48 108-161 16-65 (71)
104 2ecv_A Tripartite motif-contai 37.1 26 0.00088 22.3 2.9 47 108-160 20-74 (85)
105 2y43_A E3 ubiquitin-protein li 36.5 21 0.00071 24.0 2.4 46 108-159 23-71 (99)
106 2cs3_A Protein C14ORF4, MY039 36.4 20 0.00068 24.4 2.1 44 44-92 18-61 (93)
107 2ecm_A Ring finger and CHY zin 36.1 47 0.0016 19.2 3.8 45 108-157 6-55 (55)
108 3ng2_A RNF4, snurf, ring finge 32.5 17 0.00057 22.6 1.2 49 108-161 11-67 (71)
109 2egp_A Tripartite motif-contai 32.4 37 0.0013 21.4 3.0 45 108-158 13-66 (79)
110 2ecw_A Tripartite motif-contai 31.9 22 0.00077 22.6 1.9 47 108-160 20-74 (85)
111 3hcs_A TNF receptor-associated 31.1 40 0.0014 25.0 3.4 45 108-158 19-66 (170)
112 2ea6_A Ring finger protein 4; 30.1 22 0.00075 21.8 1.5 45 108-157 16-68 (69)
113 2ecn_A Ring finger protein 141 29.8 24 0.00082 21.9 1.7 44 108-158 16-61 (70)
114 2kre_A Ubiquitin conjugation f 29.8 72 0.0025 21.7 4.3 46 108-159 30-77 (100)
115 1chc_A Equine herpes virus-1 r 29.5 39 0.0013 20.6 2.7 44 109-157 7-52 (68)
116 1wgm_A Ubiquitin conjugation f 29.4 57 0.002 22.2 3.7 46 108-159 23-71 (98)
117 3ztg_A E3 ubiquitin-protein li 29.2 44 0.0015 21.9 3.0 43 108-156 14-61 (92)
118 2csy_A Zinc finger protein 183 29.0 50 0.0017 21.1 3.2 44 108-157 16-61 (81)
119 2ckl_A Polycomb group ring fin 26.8 46 0.0016 22.6 2.9 45 108-158 16-63 (108)
120 2ect_A Ring finger protein 126 26.8 57 0.0019 20.5 3.2 49 108-161 16-68 (78)
121 1rmd_A RAG1; V(D)J recombinati 25.7 60 0.002 22.3 3.3 47 108-160 24-73 (116)
122 3l11_A E3 ubiquitin-protein li 25.2 45 0.0015 22.9 2.6 44 108-157 16-62 (115)
123 2c2l_A CHIP, carboxy terminus 24.7 32 0.0011 27.2 1.9 55 63-121 203-257 (281)
124 4ayc_A E3 ubiquitin-protein li 24.7 80 0.0027 22.5 4.0 45 108-158 54-100 (138)
125 1jm7_A BRCA1, breast cancer ty 24.6 35 0.0012 23.1 1.9 48 108-161 22-74 (112)
126 2kr4_A Ubiquitin conjugation f 24.1 71 0.0024 20.9 3.3 46 108-159 15-62 (85)
127 2ckl_B Ubiquitin ligase protei 24.0 50 0.0017 24.3 2.8 44 108-157 55-102 (165)
128 3nw0_A Non-structural maintena 23.6 19 0.00067 29.0 0.4 11 44-54 183-193 (238)
129 1znf_A 31ST zinc finger from X 22.9 38 0.0013 15.6 1.4 12 69-80 2-13 (27)
130 3lrq_A E3 ubiquitin-protein li 22.6 40 0.0014 22.8 1.8 47 108-160 23-73 (100)
131 2yur_A Retinoblastoma-binding 21.9 48 0.0016 20.9 2.0 43 108-156 16-63 (74)
132 3hct_A TNF receptor-associated 21.6 60 0.0021 22.5 2.7 46 108-159 19-67 (118)
133 4ic3_A E3 ubiquitin-protein li 21.2 71 0.0024 20.2 2.8 43 108-158 25-68 (74)
134 1ard_A Yeast transcription fac 21.1 41 0.0014 15.7 1.3 12 69-80 3-14 (29)
135 2ep4_A Ring finger protein 24; 20.8 93 0.0032 19.2 3.3 45 108-157 16-64 (74)
136 2m0e_A Zinc finger and BTB dom 20.2 52 0.0018 15.2 1.6 12 69-80 3-14 (29)
137 2das_A Zinc finger MYM-type pr 20.1 69 0.0024 20.3 2.3 24 69-92 21-47 (62)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.88 E-value=7.5e-23 Score=165.02 Aligned_cols=107 Identities=22% Similarity=0.395 Sum_probs=98.9
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc-----------------
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS----------------- 105 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C----------------- 105 (201)
.|.+|+++|..++.|.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+|
T Consensus 9 ~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~f~~~c~~c~~~~g~~~~~~~~~ 87 (192)
T 1b8t_A 9 KCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYC-KSCYGKKYGPKGKGKGMGAGTLSTDKGES 87 (192)
T ss_dssp ECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEE-HHHHHHHHSCCCCCCCCCCCCCCCCCCCC
T ss_pred cCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeC-hhhhHhhcCccccccccccccEecCCCcc
Confidence 48899999988899999999999999999999999999999999999999 599999998874
Q ss_pred -------------------------------Cc----------------------eeeCCCCccccCCcEEEeCCeeeec
Q psy2231 106 -------------------------------KF----------------------LGCLSSVCSILSQTFYSLSVDLYHA 132 (201)
Q Consensus 106 -------------------------------~~----------------------F~C~~C~~~l~~~~f~~~~g~~yH~ 132 (201)
.+ |.|..|+++|.++.|++.||++|
T Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~y-- 165 (192)
T 1b8t_A 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIY-- 165 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEE--
T ss_pred cccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEe--
Confidence 21 89999999998888999999999
Q ss_pred cCCchhhhhhhcCCCCCCCCCcc
Q psy2231 133 SMHLRSDCLSMYGGKGNTSHTMI 155 (201)
Q Consensus 133 ~~~C~~~y~~~~~~~C~~C~~~I 155 (201)
|..||.++|+++|.+|+++|
T Consensus 166 ---C~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 166 ---CKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp ---EHHHHHHHTCCCCCCCCCCC
T ss_pred ---CHHHHHHhcCCcCCCCCCcc
Confidence 99999999999999999985
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=148.04 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=88.4
Q ss_pred ccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccC-
Q psy2231 41 TSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILS- 119 (201)
Q Consensus 41 ~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~- 119 (201)
.-.|.+|+++|.+++.+.|+|+.||++||+|..|+++|.+..|+.++|+||| +.||.++|+++| ..|+++|.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~~~~~C-----~~C~~~I~~~ 76 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVC-KPCYVKNHAVVC-----QGCHNAIDPE 76 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEE-HHHHHHHSCCBC-----TTTCSBCCTT
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEec-hHHhCcCcCccC-----cccCCcCCcC
Confidence 3458999999987889999999999999999999999998899999999999 599999999876 888889987
Q ss_pred CcEEEeCCeeeeccCCchhhhhhhcCCCCCCCCCcccCcc
Q psy2231 120 QTFYSLSVDLYHASMHLRSDCLSMYGGKGNTSHTMIPDTY 159 (201)
Q Consensus 120 ~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~C~~~I~~~~ 159 (201)
+..+...|+.||.. ..|| +|..|+++|.++.
T Consensus 77 ~~~~~a~~~~~H~~---~~CF------~C~~C~~~l~~~~ 107 (126)
T 2xqn_T 77 VQRVTYNNFSWHAS---TECF------LCSCCSKCLIGQK 107 (126)
T ss_dssp SCEEEETTEEEESS---TTTS------BCTTTCCBCTTSE
T ss_pred ceEEECCCCEeeCC---CCCc------CcCCCCCccCCCe
Confidence 35677888999721 2233 7889999998654
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.83 E-value=2.9e-21 Score=146.26 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=89.6
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCC--CceeeeCCeeeecCCccccccCCccCceeeCCCCccccCC
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVP--GSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQ 120 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~ 120 (201)
.|.+|+++|.+.+.+.|+|+.||++||+|..|+++|.. ..|+.++|+||| ++||.++|+++ ..|..|+++|.+.
T Consensus 4 ~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~~---~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 4 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC-RRDYLRLFGQD---GLCASCDKRIRAY 79 (131)
T ss_dssp BBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEEC-HHHHHHHHCCC---EECTTTCCEECTT
T ss_pred cCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEee-cCchhhhCCCc---cChhhcCCccCcc
Confidence 48899999876667999999999999999999999963 689999999999 59999999983 1357888888764
Q ss_pred -cEEEeCCeeeeccCCchhhhhhhcCCCCCCCCCccc-Cc-ceeecc-eeeccccCc
Q psy2231 121 -TFYSLSVDLYHASMHLRSDCLSMYGGKGNTSHTMIP-DT-YITQVT-IVIARCLSS 173 (201)
Q Consensus 121 -~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~C~~~I~-~~-~i~a~~-~~~~~c~~~ 173 (201)
..+...|+.||.. || +|..|+++|. +. +....+ .++..|...
T Consensus 80 e~~~~a~~~~~H~~-----CF------~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~ 125 (131)
T 2xjy_A 80 EMTMRVKDKVYHLE-----CF------KCAACQKHFCVGDRYLLINSDIVCEQDIYE 125 (131)
T ss_dssp SEEEEETTEEEEGG-----GC------BCTTTCCBCCTTCEEEEETTEEEEGGGHHH
T ss_pred ceeEeeCCceECcc-----Cc------ccCCCCCCCCCCCEEEEECCEEEcHHHHHH
Confidence 3566778888543 44 6888888884 33 444334 356666543
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.80 E-value=2.3e-20 Score=150.03 Aligned_cols=105 Identities=17% Similarity=0.280 Sum_probs=86.3
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCC--CceeeeCCeeeecCCccccccCC--ccCc-----------
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVP--GSHSEHDGKPYCNYPCYSALFSE--RSKF----------- 107 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yCe~~cy~~~~~p--~C~~----------- 107 (201)
.|.+|+++|.+.+.+.|+|+.||++||+|..|+++|.. ..|+.++|++|| +.||.++|++ +|..
T Consensus 7 ~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC-~~cy~~~~~~~~~C~~C~~~I~~~e~~ 85 (188)
T 1rut_X 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC-RNDYIRLFGNSGACSACGQSIPASELV 85 (188)
T ss_dssp BBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEEC-HHHHHHHHSCCEECTTTCCEECTTSEE
T ss_pred cCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccc-ccccccccccCCccccCCCccccCcEE
Confidence 48999999876667999999999999999999999985 689999999999 5999999998 5764
Q ss_pred ------------eeeCCCCcccc-CCcEEEeCCeeeeccCCchhhhhhhcCCCCCCCCC
Q psy2231 108 ------------LGCLSSVCSIL-SQTFYSLSVDLYHASMHLRSDCLSMYGGKGNTSHT 153 (201)
Q Consensus 108 ------------F~C~~C~~~l~-~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~C~~ 153 (201)
|.|..|+++|. +..|++.+|++| |..||.++++++|...+.
T Consensus 86 i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~y-----C~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 86 MRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-----CEHDRPTALINGHLNSGG 139 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEE-----EGGGCCTTTC--------
T ss_pred EEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEE-----CHHHHHHHhcccccccCC
Confidence 88999999985 567888899998 999999999988877654
No 5
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.77 E-value=7e-19 Score=127.41 Aligned_cols=86 Identities=17% Similarity=0.372 Sum_probs=76.1
Q ss_pred cccCCCCCeeee-cceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccC-
Q psy2231 42 SNAINLPNSMYL-AERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILS- 119 (201)
Q Consensus 42 C~cc~C~~~i~~-~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~- 119 (201)
-.|.+|+++|.. ++.+.++|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++| ..|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~~~~~C-----~~C~~~I~~~ 79 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC-NKCTTREDSPKC-----KGCFKAIVAG 79 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEEC-HHHHTTCCCCBC-----SSSCCBCCSS
T ss_pred CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEC-hhHhhhhcCCcc-----ccCCCccccC
Confidence 358999999864 788999999999999999999999988889999999999 599999999876 788889984
Q ss_pred CcEEEeCCeeeecc
Q psy2231 120 QTFYSLSVDLYHAS 133 (201)
Q Consensus 120 ~~f~~~~g~~yH~~ 133 (201)
+.++...|+.||..
T Consensus 80 ~~~~~a~~~~~H~~ 93 (101)
T 2cup_A 80 DQNVEYKGTVWHKD 93 (101)
T ss_dssp SCEEESSSCEEETT
T ss_pred CeEEEeCCcchHHh
Confidence 45788889999764
No 6
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.77 E-value=2e-19 Score=142.10 Aligned_cols=97 Identities=18% Similarity=0.384 Sum_probs=73.9
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCc---------------
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKF--------------- 107 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~--------------- 107 (201)
.|.+|+++|.+.+.+.|+|+.||++||+|..|+++|.+.. +.++|++|| +.||.++|+++|.+
T Consensus 8 ~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC-~~~y~~~f~~~C~~C~~~I~~~~~v~~a~ 85 (169)
T 2rgt_A 8 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYC-KDDFFKRFGTKCAACQLGIPPTQVVRRAQ 85 (169)
T ss_dssp BBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEEC-HHHHHHHHSCBCTTTCCBCCTTSEEEEET
T ss_pred ccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeee-cccccccccccccccccccCCCcEEEEcC
Confidence 4899999987766789999999999999999999999876 489999999 59999999998743
Q ss_pred --------eeeCCCCcccc-CCcEE-EeCCeeeeccCCchhhhhhhcCC
Q psy2231 108 --------LGCLSSVCSIL-SQTFY-SLSVDLYHASMHLRSDCLSMYGG 146 (201)
Q Consensus 108 --------F~C~~C~~~l~-~~~f~-~~~g~~yH~~~~C~~~y~~~~~~ 146 (201)
|.|..|+++|. +..|+ ..||++| |..||.++++.
T Consensus 86 ~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~-----C~~c~~~~~~~ 129 (169)
T 2rgt_A 86 DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLV-----CKADYETAKQG 129 (169)
T ss_dssp TEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEE-----EHHHHHHHHHC
T ss_pred CceEeeCCCcCCCCCCCCCCCCceEEccCCeEE-----CHHHHHHHhhc
Confidence 55555555554 33343 2355555 55555555443
No 7
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.75 E-value=9.4e-19 Score=139.85 Aligned_cols=113 Identities=13% Similarity=0.261 Sum_probs=88.1
Q ss_pred ccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCC
Q psy2231 41 TSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQ 120 (201)
Q Consensus 41 ~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~ 120 (201)
.-.|.+|+++|...+.+.|+|+.||++||+|..|+++|.+..| .++|++|| +.||.++|+++| ..|+++|.+.
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC-~~~y~~~f~~kC-----~~C~~~I~~~ 132 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYC-KDDFFKRFGTKC-----AACQLGIPPT 132 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEEC-HHHHHHTTSCCC-----TTTCCCCCSS
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeee-cCcccccccccc-----ccCCCccCCC
Confidence 4568899999877777899999999999999999999998775 79999999 599999999887 6788888765
Q ss_pred c-EEEeCCeeeeccCCchhhhhhhcCCCCCCCCCcccC-c-c-eeecc-eeecccc
Q psy2231 121 T-FYSLSVDLYHASMHLRSDCLSMYGGKGNTSHTMIPD-T-Y-ITQVT-IVIARCL 171 (201)
Q Consensus 121 ~-f~~~~g~~yH~~~~C~~~y~~~~~~~C~~C~~~I~~-~-~-i~a~~-~~~~~c~ 171 (201)
. .+...++.||.. || +|..|+++|.. . + +...+ .+|..|.
T Consensus 133 ~~v~~a~~~~~H~~-----CF------~C~~C~~~L~~g~~f~~~~~g~~yC~~cy 177 (182)
T 2jtn_A 133 QVVRRAQDFVYHLH-----CF------ACVVCKRQLATGDEFYLMEDSRLVCKADY 177 (182)
T ss_dssp CCCCEETTEECCTT-----TC------CCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred ceEEecCCCCEEeC-----CC------cCCCCCCCCCCCCceEEccCCEEECHHHH
Confidence 4 345677888553 44 78899999873 2 2 22223 4566553
No 8
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.6e-19 Score=132.22 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=81.5
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCC--CceeeeCCeeeecCCccccccCCccCceeeC---CCCcc-
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVP--GSHSEHDGKPYCNYPCYSALFSERSKFLGCL---SSVCS- 116 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~---~C~~~- 116 (201)
.|.+|+++|...+.+.|+++.||++||+|..|+++|.+ ..|+.++|+||| +.||.++|+|+|....+. .|..+
T Consensus 5 ~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC-~~~y~~~f~~~c~~c~~~~~~~~~~~~ 83 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC-RRDYLRLGGSGGHMGSGGDVMVVGEPT 83 (114)
T ss_dssp CBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCC-HHHHHHHHTSCCSSCBSCSCCCSSCSS
T ss_pred CCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeec-hHHHHHHhCcccCcCCCCceeEcCCcc
Confidence 48899999887778999999999999999999999985 589999999999 599999999998432221 23344
Q ss_pred ccCCcEEEeCCeeeeccCCchhhhhhhcCC
Q psy2231 117 ILSQTFYSLSVDLYHASMHLRSDCLSMYGG 146 (201)
Q Consensus 117 l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~ 146 (201)
+.++.|++.||++| |..||.+..+.
T Consensus 84 ~~g~~f~~~~~~~~-----C~~~~~~~~~~ 108 (114)
T 1j2o_A 84 LMGGEFGDEDERLI-----TRLENTQFDAA 108 (114)
T ss_dssp TTSSBCCCSSSCCC-----EEEECTTCCCT
T ss_pred CCCCeeEEcCCEee-----cchhhhccccc
Confidence 56778999999999 99999876543
No 9
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3e-19 Score=134.15 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=79.2
Q ss_pred cccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCC--CCceeeeCCeeeecCCccccccCC--ccCceeeCCCCccc
Q psy2231 42 SNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLV--PGSHSEHDGKPYCNYPCYSALFSE--RSKFLGCLSSVCSI 117 (201)
Q Consensus 42 C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yCe~~cy~~~~~p--~C~~F~C~~C~~~l 117 (201)
-.|.+|+++|..++.+.|+++.||++||+|..|+++|. +..|+.++|++|| +.||.++|++ +| ..|+++|
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC-~~cy~~~f~~~~~C-----~~C~~~I 79 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC-RNDYIRLFGNSGAG-----GSGGHMG 79 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEEC-HHHHHHHHCCCCSS-----SCSSCCS
T ss_pred CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeec-HHHHHHHcCCCCcc-----ccCCCCc
Confidence 35899999987777799999999999999999999997 3579999999999 5999999999 66 5555554
Q ss_pred -------------cCCcEEEeCCeeeeccCCchhhhhhhcCC
Q psy2231 118 -------------LSQTFYSLSVDLYHASMHLRSDCLSMYGG 146 (201)
Q Consensus 118 -------------~~~~f~~~~g~~yH~~~~C~~~y~~~~~~ 146 (201)
.|+.|++.||++| |..||.+.++.
T Consensus 80 ~~~~~~~~g~~~l~g~~f~~~~~~~y-----C~~~~~~~~~~ 116 (122)
T 1m3v_A 80 SGGDVMVVGEPTLMGGEFGDEDERLI-----TRLENTQFDAA 116 (122)
T ss_dssp CCEESSSSSSSSCCSCTTCCTTCCCC-----EECTTTTTTCC
T ss_pred CchheEEcCCcCCCCCccEecCCEeE-----ccCcchhchhh
Confidence 4556888888888 99999877643
No 10
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.71 E-value=9.4e-18 Score=135.08 Aligned_cols=58 Identities=36% Similarity=0.857 Sum_probs=53.6
Q ss_pred CCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc
Q psy2231 47 LPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 47 C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
|+++|.+++.|.++|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++|
T Consensus 121 C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~f~~kc 178 (192)
T 1b8t_A 121 CGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYC-KGCYAKNFGPKG 178 (192)
T ss_dssp TSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEE-HHHHHHHTCCCC
T ss_pred CCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeC-HHHHHHhcCCcC
Confidence 5677767788999999999999999999999998899999999999 699999999988
No 11
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.5e-17 Score=113.73 Aligned_cols=61 Identities=28% Similarity=0.604 Sum_probs=57.5
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.+|+++|.+++.|.++++.||++||+|..|+++|.+ .|+.++|+||| +.||.++|+++|.
T Consensus 18 C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC-~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYC-ESDYHAQFGSGPS 78 (80)
T ss_dssp CTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEEC-TTHHHHHTTCCST
T ss_pred CcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEEC-HHHHHHHcCCCCC
Confidence 8999999988899999999999999999999999986 69999999999 5999999999984
No 12
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.65 E-value=9.7e-17 Score=128.78 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=73.6
Q ss_pred cCcccCcccceeeeece-eeccCCCcccCCCcccccC-----------------------------------CCCCeeee
Q psy2231 10 VNSRGAGLQQYAMILDL-LLSSSGRRYVLQHHTSNAI-----------------------------------NLPNSMYL 53 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~~a~g~~~h~~cf~C~cc-----------------------------------~C~~~i~~ 53 (201)
..++..+... .|.++ ++.|+|+.||++||+|.-| +|+++|..
T Consensus 4 ~~~~C~~C~~--~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 4 SWKRCAGCGG--KIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CCCBBTTTCC--BCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CCCcCccCCC--EeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 3455666665 33344 6899999999999998644 47788765
Q ss_pred cc-eEEeCCCcccCCCcccCCCCCcCC-CCceeeeCCeeeecCCccccccCCccCc
Q psy2231 54 AE-RKTSLGKDWHGSCLRCENCNKTLV-PGSHSEHDGKPYCNYPCYSALFSERSKF 107 (201)
Q Consensus 54 ~~-~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yCe~~cy~~~~~p~C~~ 107 (201)
.+ .+.|+++.||++||+|..|+++|. +..|+..++++|| +.||.++++++|.+
T Consensus 82 ~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC-~~c~~~~~~~~~~~ 136 (188)
T 1rut_X 82 SELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC-EHDRPTALINGHLN 136 (188)
T ss_dssp TSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEE-GGGCCTTTC-----
T ss_pred CcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEEC-HHHHHHHhcccccc
Confidence 45 578999999999999999999996 5579999999999 69999999999843
No 13
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.64 E-value=6.2e-17 Score=122.30 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=71.9
Q ss_pred cccCcccceeeeece-eeccCCCcccCCCcccccC-----------------------------------CCCCeeeecc
Q psy2231 12 SRGAGLQQYAMILDL-LLSSSGRRYVLQHHTSNAI-----------------------------------NLPNSMYLAE 55 (201)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~a~g~~~h~~cf~C~cc-----------------------------------~C~~~i~~~~ 55 (201)
++..+..+ .|.++ ++.|+|+.||++||+|.-| +|+++|...+
T Consensus 3 ~~C~~C~~--~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 3 LTCGGCQQ--NIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CBBTTTCC--BCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred ccCcCCCC--EeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 44555555 33444 7899999999999998654 4677765444
Q ss_pred -eEEeCCCcccCCCcccCCCCCcCC-CCceeeeCCeeeecCCccccccCCc
Q psy2231 56 -RKTSLGKDWHGSCLRCENCNKTLV-PGSHSEHDGKPYCNYPCYSALFSER 104 (201)
Q Consensus 56 -~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yCe~~cy~~~~~p~ 104 (201)
.+.|+++.||++||+|..|+++|. +..|+..+|++|| .+||.++|+++
T Consensus 81 ~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C-~~c~~~~~~~~ 130 (131)
T 2xjy_A 81 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC-EQDIYEWTKIN 130 (131)
T ss_dssp EEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEE-GGGHHHHHHHH
T ss_pred eeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEc-HHHHHHHhhcc
Confidence 588999999999999999999994 6679999999999 59999988754
No 14
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.6e-16 Score=109.41 Aligned_cols=64 Identities=53% Similarity=1.154 Sum_probs=59.9
Q ss_pred cccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecC-CccccccCCccC
Q psy2231 42 SNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNY-PCYSALFSERSK 106 (201)
Q Consensus 42 C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~-~cy~~~~~p~C~ 106 (201)
-.|.+|+++|.+++.|.|+++.||++||+|..|+++|.+..|+.+++++|| . +||.++|+|+|+
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC-HKPCYATLFGSGPS 74 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEEC-TTTHHHHHSCSSCS
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEec-chHHHHHhcccccC
Confidence 358999999987999999999999999999999999998899999999999 7 699999999985
No 15
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.2e-16 Score=107.28 Aligned_cols=62 Identities=56% Similarity=1.201 Sum_probs=58.5
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecC-CccccccCCcc
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNY-PCYSALFSERS 105 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~-~cy~~~~~p~C 105 (201)
.|.+|+++|.+++.|.++|+.||++||+|..|+++|.+..|+.++|++|| . +||.++|+++|
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~cy~~~f~~~C 64 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYC-NHPCYSAMFGPKG 64 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEE-TTTHHHHHSSCCC
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEee-CHHHHHHHhCccC
Confidence 48899999987999999999999999999999999999899999999999 7 59999999988
No 16
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.9e-16 Score=112.78 Aligned_cols=61 Identities=30% Similarity=0.661 Sum_probs=58.3
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
|.+|++.|.+++.|.++++.||++||+|..|+++|.+..|+.++|++|| ..||.++|+|+|
T Consensus 18 C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~y~~~f~~kc 78 (91)
T 2d8y_A 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYC-KPHFNQLFKSKG 78 (91)
T ss_dssp CTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCC-HHHHHHHSCCCS
T ss_pred CccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEEC-HHHHHHHhCCCc
Confidence 9999999988889999999999999999999999999889999999999 599999999998
No 17
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.1e-16 Score=109.61 Aligned_cols=64 Identities=25% Similarity=0.531 Sum_probs=59.0
Q ss_pred ccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 41 TSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 41 ~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
.-.|.+|+++| .++.|.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+|.
T Consensus 25 ~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~f~~~c~ 88 (90)
T 2dar_A 25 TPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYC-ELCYEKFFASGPS 88 (90)
T ss_dssp CCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEEC-HHHHHHHTSCCCC
T ss_pred CCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEEC-HHHHHHHcCCCCC
Confidence 34589999997 6888999999999999999999999998899999999999 5999999999984
No 18
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.3e-16 Score=106.14 Aligned_cols=66 Identities=20% Similarity=0.428 Sum_probs=59.3
Q ss_pred cccccCCCCCeeee---cceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYL---AERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~---~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++|.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~f~~~C~ 72 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFC-QKCGSGMDTDISG 72 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEE-TTTTCCCCCCSSS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEEC-HHHhhhhhCCcCC
Confidence 34468899999863 478999999999999999999999998899999999999 6999999999983
No 19
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.60 E-value=2.5e-16 Score=109.67 Aligned_cols=66 Identities=26% Similarity=0.554 Sum_probs=56.2
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeC
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCL 111 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~ 111 (201)
.|.+|+++|.+++.+.++++.||++||+|..|+++|.+..|+.+++++|| ++||.++|+|+| +.|.
T Consensus 9 ~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c--~gcg 74 (81)
T 1a7i_A 9 KCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYC-KSCYGKKYGPKG--YGYG 74 (81)
T ss_dssp BCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEEC-SHHHHHHCC---------
T ss_pred cCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEEC-HHHHHHHhCCcc--cccC
Confidence 48899999888999999999999999999999999999899999999999 599999999999 5554
No 20
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5.6e-16 Score=105.32 Aligned_cols=65 Identities=25% Similarity=0.606 Sum_probs=59.3
Q ss_pred ccccCCCCCeeeec-ceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 41 TSNAINLPNSMYLA-ERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 41 ~C~cc~C~~~i~~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
.-.|.+|+++|.++ +.+.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYC-VPCYENKFASGPS 70 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEE-HHHHHHHTSCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEEC-HHHHHHHccCcCC
Confidence 34588999998774 77999999999999999999999999899999999999 5999999999984
No 21
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5.7e-16 Score=104.59 Aligned_cols=63 Identities=22% Similarity=0.526 Sum_probs=58.1
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCc
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKF 107 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~ 107 (201)
.|.+|+++| .++.|.++++.||++||+|..|+++|.+..|+.+++++|| ++||.++|+++|.+
T Consensus 7 ~C~~C~~~I-~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C~g 69 (69)
T 2cur_A 7 GCVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC-VDCYKNFVSGPSSG 69 (69)
T ss_dssp CCSSSCCCC-CTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEE-HHHHHHHHTCSCCC
T ss_pred CCcccCCEe-CcceEEECccccccCcCEECCCCCCCCCCccEeECCEEEC-HHHhHHHhcCCCCC
Confidence 488999997 4678999999999999999999999998899999999999 59999999999853
No 22
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=7.8e-16 Score=104.59 Aligned_cols=66 Identities=20% Similarity=0.564 Sum_probs=59.6
Q ss_pred cccccCCCCCeeeec-ceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLA-ERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|.++ ..+.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFC-VPCYEKQHASGPS 70 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEE-HHHHHHHTSSCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEEC-HHHHhHHhCCCCC
Confidence 334588999998776 57999999999999999999999999899999999999 5999999999984
No 23
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=7.1e-16 Score=104.34 Aligned_cols=65 Identities=22% Similarity=0.553 Sum_probs=58.7
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++|| ..||.++|+|+|.
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYC-LNCFCDLYASGPS 68 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEEC-HHHHHHHTCCCCT
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEEC-HHHHHHHhccccC
Confidence 3345889999975 677999999999999999999999998899999999999 5999999999984
No 24
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.7e-15 Score=105.01 Aligned_cols=61 Identities=33% Similarity=0.552 Sum_probs=56.1
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCcee--eeCCeeeecCCccccccCCcc
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~--~~~g~~yCe~~cy~~~~~p~C 105 (201)
|.+|++.|++++.|.++++.||++||+|..|+++|....|+ +++|++|| +.||.++|++..
T Consensus 18 C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~~~ 80 (82)
T 2co8_A 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYC-LQHLPQTDSGPS 80 (82)
T ss_dssp CSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEE-TTTCCCCCCCCC
T ss_pred CcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEC-hHHHHhhhcCCC
Confidence 89999999888999999999999999999999999998888 47999999 599999988654
No 25
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.58 E-value=5e-16 Score=104.01 Aligned_cols=62 Identities=24% Similarity=0.526 Sum_probs=57.0
Q ss_pred ccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCc
Q psy2231 41 TSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104 (201)
Q Consensus 41 ~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~ 104 (201)
.-.|.+|+++|. ++.|.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYC-ETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEEC-HHHHHHHCSCC
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEEC-HHHHHHHhCCC
Confidence 345899999986 888999999999999999999999999899999999999 59999999875
No 26
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=4.1e-16 Score=108.28 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=56.5
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.+|+++|. ++.|.|+++.||++||+|..|+++|.+..|+.+++++|| +.||.++|+|++.
T Consensus 18 C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~~~p~g~ 78 (79)
T 1x62_A 18 CDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYC-EKHARERVSGPSS 78 (79)
T ss_dssp CSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEEC-HHHHHHHHSSCCC
T ss_pred cccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEEC-HHHHHHHhCCCCC
Confidence 899999975 578999999999999999999999988789999999999 5999999999874
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=104.70 Aligned_cols=66 Identities=18% Similarity=0.450 Sum_probs=59.3
Q ss_pred cccccCCCCCeeee-cceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYL-AERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~-~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|.+ +..+.|+++.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C-~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLC-NDCYCSAFSSGPS 80 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEE-TTTSSCCGGGSSC
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEEC-HHHHhhhcCCCCC
Confidence 34568899999873 567889999999999999999999999899999999999 6999999999984
No 28
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.6e-15 Score=105.70 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=57.2
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
.|.+|++.|. ++.|.|+++.||++||+|..|+++|.+..|+.+++++|| +.||.++|+|++.
T Consensus 27 ~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~y~~~f~p~~~ 88 (89)
T 1x64_A 27 LCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC-ETHARARTSGPSS 88 (89)
T ss_dssp BCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEEC-HHHHHHHSSSCCC
T ss_pred CcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEEC-HHHHHHHhCCCCC
Confidence 3899999975 588999999999999999999999998899999999999 5999999999874
No 29
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.8e-15 Score=102.94 Aligned_cols=63 Identities=19% Similarity=0.405 Sum_probs=57.2
Q ss_pred cccCCCCCeeee---cceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc
Q psy2231 42 SNAINLPNSMYL---AERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 42 C~cc~C~~~i~~---~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
-.|.+|+++|.+ .+.|.|+|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILC-PDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEEC-HHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEC-hhHcCcccCCCC
Confidence 358999999874 377999999999999999999999998899999999999 599999999975
No 30
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2e-15 Score=104.67 Aligned_cols=65 Identities=20% Similarity=0.482 Sum_probs=59.1
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|. ++.|.|+++.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFC-ELHYHHRRGSGPS 78 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEEC-HHHHHHHHSSSCC
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEEC-HHHHHHHcCCCCC
Confidence 3456899999975 578999999999999999999999998899999999999 5999999999984
No 31
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=1.9e-15 Score=103.94 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=56.5
Q ss_pred cccCCCCCeeeecc-eEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 42 SNAINLPNSMYLAE-RKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 42 C~cc~C~~~i~~~~-~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
-.|.+|+++|.+++ .+.++|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+|+|.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC-EHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEEC-HHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeC-HHHHHHHhhcccC
Confidence 35899999987544 5789999999999999999999998899999999999 5999999999983
No 32
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=4.4e-15 Score=103.32 Aligned_cols=65 Identities=14% Similarity=0.331 Sum_probs=58.0
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeee-CCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEH-DGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yCe~~cy~~~~~p~C~ 106 (201)
+.-.|.+|+++|. ++.|.|+++.||++||+|..|+++|.+..|+.. +|++|| +.||.++|+|+|+
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC-~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 14 TLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHC-IEDFHRKFASGPS 79 (81)
T ss_dssp SCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEE-HHHHHHHTTSSSC
T ss_pred CCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEEC-HHHHHHHhcCcCC
Confidence 4456889999985 678999999999999999999999998888876 789999 5999999999984
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=6.1e-15 Score=102.66 Aligned_cols=66 Identities=20% Similarity=0.496 Sum_probs=59.3
Q ss_pred cccccCCCCCeeeecc-eEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAE-RKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~-~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|.+++ .|.|+++.||++||+|..|+++|.+..|+.+++++|| +.||.++|+|++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYC-VTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEE-HHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEEC-HHHHHHHhCCCCC
Confidence 4456889999987655 5899999999999999999999999899999999999 5999999999873
No 34
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.51 E-value=4.2e-15 Score=117.24 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=72.0
Q ss_pred CcccCcccceeeeeceeeccCCCcccCCCcccccC------------------------------CCCCeeeecce-EEe
Q psy2231 11 NSRGAGLQQYAMILDLLLSSSGRRYVLQHHTSNAI------------------------------NLPNSMYLAER-KTS 59 (201)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~a~g~~~h~~cf~C~cc------------------------------~C~~~i~~~~~-v~a 59 (201)
.++..+..+... ...++.|+|+.||++||+|.-| +|++.|..++. +.|
T Consensus 6 ~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a 84 (169)
T 2rgt_A 6 IPMCAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 84 (169)
T ss_dssp -CBBSSSSSBCC-SSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEE
T ss_pred CCccccCCCccC-CcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEc
Confidence 456666665332 2346889999999999999766 58888766554 579
Q ss_pred CCCcccCCCcccCCCCCcCCC-Ccee-eeCCeeeecCCccccccCCcc
Q psy2231 60 LGKDWHGSCLRCENCNKTLVP-GSHS-EHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 60 ~g~~wH~~CF~C~~C~~~L~~-~~f~-~~~g~~yCe~~cy~~~~~p~C 105 (201)
+++.||++||+|..|+++|.. ..|+ ..+|++|| +.||.+++...+
T Consensus 85 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C-~~c~~~~~~~~~ 131 (169)
T 2rgt_A 85 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC-KADYETAKQGGS 131 (169)
T ss_dssp TTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEE-HHHHHHHHHCC-
T ss_pred CCceEeeCCCcCCCCCCCCCCCCceEEccCCeEEC-HHHHHHHhhccC
Confidence 999999999999999999974 4565 56899999 699998876543
No 35
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=6.9e-15 Score=101.93 Aligned_cols=65 Identities=23% Similarity=0.612 Sum_probs=58.7
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|. ++.|.|+++.||++||+|..|+++|.+..|+.+++++|| +.||.++|+|+|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYC-VACFGELFASGPS 78 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEE-HHHHHHHTTCSTT
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEEC-HHHHHHHcCCCCC
Confidence 3456889999974 578999999999999999999999998899999999999 5999999999984
No 36
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=8.3e-15 Score=99.11 Aligned_cols=61 Identities=18% Similarity=0.494 Sum_probs=56.2
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
.|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.++|++|| +.||.++|+++.
T Consensus 7 ~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~c~~~~~~~~~ 67 (70)
T 2d8x_A 7 GCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLC-RPCHNREKASGP 67 (70)
T ss_dssp BCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEEC-HHHHHHHHCCCS
T ss_pred cCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEEC-HHHhhhhcCCCC
Confidence 4889999975 788999999999999999999999999999999999999 599999998764
No 37
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.49 E-value=1.1e-14 Score=116.16 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=69.6
Q ss_pred cCcccCcccceeeeeceeeccCCCcccCCCcccccC------------------------------CCCCeeeecc-eEE
Q psy2231 10 VNSRGAGLQQYAMILDLLLSSSGRRYVLQHHTSNAI------------------------------NLPNSMYLAE-RKT 58 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~g~~~h~~cf~C~cc------------------------------~C~~~i~~~~-~v~ 58 (201)
..++..+..+... ...++.++|+.||++||+|.-| +|+++|.+.+ .+.
T Consensus 59 ~~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~ 137 (182)
T 2jtn_A 59 EIPMCAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 137 (182)
T ss_dssp SCCBCBTSSSBCC-CSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCE
T ss_pred CCCcCccCCCCcc-CceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEe
Confidence 3456666666332 2347889999999999999766 5888876555 468
Q ss_pred eCCCcccCCCcccCCCCCcCCC-Ccee-eeCCeeeecCCccccc
Q psy2231 59 SLGKDWHGSCLRCENCNKTLVP-GSHS-EHDGKPYCNYPCYSAL 100 (201)
Q Consensus 59 a~g~~wH~~CF~C~~C~~~L~~-~~f~-~~~g~~yCe~~cy~~~ 100 (201)
|+++.||++||+|..|+++|.. ..|+ ..+|++|| +.||.++
T Consensus 138 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC-~~cy~~~ 180 (182)
T 2jtn_A 138 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC-KADYETA 180 (182)
T ss_dssp ETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEEC-HHHHHHH
T ss_pred cCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEEC-HHHHHHh
Confidence 9999999999999999999974 4565 56899999 6998764
No 38
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.7e-14 Score=100.19 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=55.2
Q ss_pred cccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCcc
Q psy2231 42 SNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 42 C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
-.|.+|+++|. ++.|.|+|+.||++||+|..|+++|.+.. +.++|++|| +.||.++|+|.+
T Consensus 16 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC-~~cy~~~f~p~~ 76 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYC-LPCHDKMGVSGP 76 (79)
T ss_dssp CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEEC-HHHHHTTSCCSS
T ss_pred CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeC-HHHHHHhCCCCC
Confidence 34899999976 88899999999999999999999999875 599999999 599999999875
No 39
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=104.87 Aligned_cols=109 Identities=9% Similarity=0.166 Sum_probs=89.3
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGN 149 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~ 149 (201)
+|..|++++.+..+..-.|+.|- +.| |.|..|+++|.++.|++.||++| |..||.++|+++|.
T Consensus 5 ~C~~C~~~I~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~cy~~~~~~~C~ 67 (126)
T 2xqn_T 5 RCAGCDELIFSNEYTQAENQNWH----------LKH--FCCFDCDSILAGEIYVMVNDKPV-----CKPCYVKNHAVVCQ 67 (126)
T ss_dssp BBTTTSSBCCSSCEEEETTEEEC----------GGG--SBCTTTCCBCTTSEEEEETTEEE-----EHHHHHHHSCCBCT
T ss_pred CCccCCCEeCCceEEeeCCCCcc----------CCC--CCcCCCCCCCCcCEEEeECCEEe-----chHHhCcCcCccCc
Confidence 68899999986555555555555 455 99999999999999999999999 99999999999999
Q ss_pred CCCCccc--Ccceeecce-ee--ccccCcceeeeeeeCCcceEEEeecCccc
Q psy2231 150 TSHTMIP--DTYITQVTI-VI--ARCLSSVYSIQLVKPSIRYRLTYIMPPCT 196 (201)
Q Consensus 150 ~C~~~I~--~~~i~a~~~-~~--~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
+|+++|. +..|.|++. +| ..|++ +....+..++.+|.+....|+|.
T Consensus 68 ~C~~~I~~~~~~~~a~~~~~H~~~~CF~-C~~C~~~l~~~~f~~~~~~~yC~ 118 (126)
T 2xqn_T 68 GCHNAIDPEVQRVTYNNFSWHASTECFL-CSCCSKCLIGQKFMPVEGMVFCS 118 (126)
T ss_dssp TTCSBCCTTSCEEEETTEEEESSTTTSB-CTTTCCBCTTSEEEEETTEEESS
T ss_pred ccCCcCCcCceEEECCCCEeeCCCCCcC-cCCCCCccCCCeeEeECCEEcch
Confidence 9999999 578999986 56 67753 44566666678888888888886
No 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.7e-14 Score=97.69 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=55.3
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCC-CCceeeeCCeeeecCCccccccCCc
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLV-PGSHSEHDGKPYCNYPCYSALFSER 104 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yCe~~cy~~~~~p~ 104 (201)
|.-.|.+|+++|. ++.|.|+|+.||++||+|..|+++|. +..|+.+++++|| +.||.++++..
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC-~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH-PACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEEC-TTHHHHTSSSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEC-hHHChHhhccc
Confidence 3445899999974 58899999999999999999999998 6789999999999 69999887754
No 41
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=3.1e-14 Score=96.67 Aligned_cols=60 Identities=20% Similarity=0.411 Sum_probs=54.2
Q ss_pred cccCCCCCeeeec-ceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccC
Q psy2231 42 SNAINLPNSMYLA-ERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102 (201)
Q Consensus 42 C~cc~C~~~i~~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~ 102 (201)
-.|.+|+++|..+ ..+.++++.||++||+|..|+++|.+..|+.+++++|| +.||.++|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~cy~~~~~ 66 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYC-EGCYVATLE 66 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEE-HHHHHHHHH
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEEC-HHHHHHHHc
Confidence 3588999998764 57999999999999999999999988889999999999 599999885
No 42
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.43 E-value=3.6e-14 Score=95.90 Aligned_cols=62 Identities=24% Similarity=0.516 Sum_probs=55.0
Q ss_pred cccccCCCCCeeeecce-EEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccC
Q psy2231 40 HTSNAINLPNSMYLAER-KTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~-v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~ 102 (201)
+.-.|.+|+++|..++. +.++|+.||++||+|..|+++|.+..|+.++|++|| +.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC-~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYC-EHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEEC-HHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeC-HHHHHHhhC
Confidence 34458999999877775 679999999999999999999998899999999999 599998875
No 43
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.42 E-value=5.8e-13 Score=95.97 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=72.3
Q ss_pred ccCCCCCcCCC-CceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVP-GSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~-~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++.. .....-.|+.|- +.| |.|..|+++|.+..|++.||++| |+.||.++|+++|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~cy~~~~~~~C 69 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWH----------DTC--FRCAKCLHPLANETFVAKDNKIL-----CNKCTTREDSPKC 69 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEE----------TTT--CCCSSSCCCTTSSCCEEETTEEE-----CHHHHTTCCCCBC
T ss_pred cCcccCCcccCCceEEEECccChh----------hcC--CcccccCCCCCcCeeECcCCEEE-----ChhHhhhhcCCcc
Confidence 68899999964 455555666666 345 99999999999888999999999 9999999999999
Q ss_pred CCCCCccc--Ccceeecce-eeccccC
Q psy2231 149 NTSHTMIP--DTYITQVTI-VIARCLS 172 (201)
Q Consensus 149 ~~C~~~I~--~~~i~a~~~-~~~~c~~ 172 (201)
.+|+++|. +..|.|++. +|..|+.
T Consensus 70 ~~C~~~I~~~~~~~~a~~~~~H~~CF~ 96 (101)
T 2cup_A 70 KGCFKAIVAGDQNVEYKGTVWHKDCFS 96 (101)
T ss_dssp SSSCCBCCSSSCEEESSSCEEETTTCC
T ss_pred ccCCCccccCCeEEEeCCcchHHhCCC
Confidence 99999999 568999986 6777753
No 44
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.42 E-value=7.1e-14 Score=93.39 Aligned_cols=59 Identities=22% Similarity=0.483 Sum_probs=51.6
Q ss_pred cccCCCCCeeee-cceEEeCCCccc--CCCcccCCCCCcCCCCceeeeCCeeeecCCccccc
Q psy2231 42 SNAINLPNSMYL-AERKTSLGKDWH--GSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSAL 100 (201)
Q Consensus 42 C~cc~C~~~i~~-~~~v~a~g~~wH--~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~ 100 (201)
-.|.+|+++|.+ ++.|.++|+.|| ++||+|..|+++|.+..|+.++|+|||+.+||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 358899999876 478999999999 99999999999999989999999999932777654
No 45
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=6.9e-14 Score=97.13 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=56.7
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCC-Ccee-eeCCeeeecCCccccccCCccC
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVP-GSHS-EHDGKPYCNYPCYSALFSERSK 106 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~-~~f~-~~~g~~yCe~~cy~~~~~p~C~ 106 (201)
|.-.|.+|+++|. ++.|.|+++.||++||+|..|+++|.. ..|+ ++++++|| +.||.++|++.+.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C-~~c~~~~~~~~~s 80 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYC-GKCHNEVVSGPSS 80 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE-HHHHHHHHCTTSC
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEEC-HHHHHHHhcCCCC
Confidence 4446899999986 888999999999999999999999975 5677 58999999 5999999998874
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-14 Score=105.93 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=55.7
Q ss_pred CcccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCC--CCceeeeCCeeeecCCccccccC
Q psy2231 39 HHTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLV--PGSHSEHDGKPYCNYPCYSALFS 102 (201)
Q Consensus 39 cf~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yCe~~cy~~~~~ 102 (201)
-+.-.|.+|+++|...+.+.|+|+.||++||+|..|+++|. +..|+.++|++|| +.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC-~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC-RNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBC-HHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeC-HHHhhhhcC
Confidence 34556999999987766799999999999999999999997 4689999999999 599999875
No 47
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=95.08 Aligned_cols=60 Identities=22% Similarity=0.492 Sum_probs=52.9
Q ss_pred cccccCCCCCeeee----cceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccc
Q psy2231 40 HTSNAINLPNSMYL----AERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSAL 100 (201)
Q Consensus 40 f~C~cc~C~~~i~~----~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~ 100 (201)
|.-.|.+|+++|.+ .+.+.|+++.||++||+|..|+++|.+..|+.++|++|| ++||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC-~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC-PDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECC-HHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEC-hHHhccC
Confidence 44568999999873 478999999999999999999999998899999999999 5998653
No 48
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=5e-13 Score=100.02 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=79.4
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCcccc--CCcEEEeCCeeeeccCCchhhhhhhcCC-
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSIL--SQTFYSLSVDLYHASMHLRSDCLSMYGG- 146 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~--~~~f~~~~g~~yH~~~~C~~~y~~~~~~- 146 (201)
+|..|++++.+.....-.++.| ++.| |+|..|+++|. +..|++.||++| |..||.++|++
T Consensus 7 ~C~~C~~~I~~~~~~~a~~~~w----------H~~C--F~C~~C~~~L~~~~~~~~~~~g~~y-----C~~cy~~~f~~~ 69 (122)
T 1m3v_A 7 RCAGCGGKIADRFLLYAMDSYW----------HSRC--LKCSSCQAQLGDIGTSSYTKSGMIL-----CRNDYIRLFGNS 69 (122)
T ss_dssp CBSSSSSCCCSSCCEEETTEEE----------CHHH--HCCSSSCCCTTTSEECCEEETTEEE-----CHHHHHHHHCCC
T ss_pred CCcccCCEeCCcEEEEECCcee----------HhhC--CCcCCCCCcccccCCeEEEECCeee-----cHHHHHHHcCCC
Confidence 6889999987654344444444 4566 99999999997 467999999999 99999999999
Q ss_pred -CCCCCCCcccCcceeecceeeccccCcceeeeeeeCCcceEEEeecCcccc
Q psy2231 147 -KGNTSHTMIPDTYITQVTIVIARCLSSVYSIQLVKPSIRYRLTYIMPPCTY 197 (201)
Q Consensus 147 -~C~~C~~~I~~~~i~a~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
+|++|+++|++..|.+++. ...+..+|.....+|+|..
T Consensus 70 ~~C~~C~~~I~~~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~ 108 (122)
T 1m3v_A 70 GAGGSGGHMGSGGDVMVVGE-------------PTLMGGEFGDEDERLITRL 108 (122)
T ss_dssp CSSSCSSCCSCCEESSSSSS-------------SSCCSCTTCCTTCCCCEEC
T ss_pred CccccCCCCcCchheEEcCC-------------cCCCCCccEecCCEeEccC
Confidence 9999999999988887762 2456778888888899864
No 49
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.28 E-value=8.1e-13 Score=98.99 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=55.4
Q ss_pred ccCCCCCeeeecc-eEEeCCCcccCCCcccCCCCCcC-CCCceeeeCCeeeecCCccccccCCcc
Q psy2231 43 NAINLPNSMYLAE-RKTSLGKDWHGSCLRCENCNKTL-VPGSHSEHDGKPYCNYPCYSALFSERS 105 (201)
Q Consensus 43 ~cc~C~~~i~~~~-~v~a~g~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yCe~~cy~~~~~p~C 105 (201)
.|.+|++.|..++ .+.|+++.||++||+|..|+++| .+..|+.+++++|| ..||.++|+++|
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC-~~cy~~~~~~~~ 73 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVC-EQDIYEWTKING 73 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEE-GGGHHHHHHHHT
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEc-HHHhHHHhcccc
Confidence 5899999987644 57899999999999999999999 45579999999999 599999999887
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=4.7e-12 Score=87.83 Aligned_cols=63 Identities=22% Similarity=0.477 Sum_probs=52.7
Q ss_pred cccccCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCe-eeecCCccccccCCc
Q psy2231 40 HTSNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGK-PYCNYPCYSALFSER 104 (201)
Q Consensus 40 f~C~cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~-~yCe~~cy~~~~~p~ 104 (201)
|.-.|.+|+++|. ++.|.|+++.||++||+|..|+++|.+..++..+++ +|| +.||.+++...
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C-~~C~~~~~~~~ 77 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMC-QKCSLPVSVSG 77 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEE-HHHHSCCSSCC
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEC-hhhhcccCCCC
Confidence 4446899999975 788999999999999999999999987776666665 699 69998877643
No 51
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=4.2e-11 Score=82.63 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=35.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCCC
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGNT 150 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~ 150 (201)
|.|..|+++|.++.|++.+|++| |..||.++|+++|+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPY-----CVACFGELFASGPSS 79 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEE-----EHHHHHHHTTCSTTC
T ss_pred CCcccCCCcCCCCeeEeECCEEE-----CHHHHHHHcCCCCCC
Confidence 99999999999889999999999 999999999999974
No 52
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=4.1e-11 Score=82.68 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=36.0
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCCC
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGNT 150 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~ 150 (201)
|.|..|+++|.++.|++.+|++| |..||.++|+++|++
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~y-----C~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPF-----CELHYHHRRGSGPSS 79 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEE-----CHHHHHHHHSSSCCC
T ss_pred CChhhCCCCCCCCcEEeECCEEE-----CHHHHHHHcCCCCCC
Confidence 99999999999888999999999 999999999999975
No 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=83.92 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=34.6
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCCC
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGNT 150 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~~ 150 (201)
|.|..|+++|.++.|+..+|++| |..||.++|+++|++
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~-----C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELL-----CNDCYCSAFSSGPSS 81 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEE-----ETTTSSCCGGGSSCC
T ss_pred CeecCCCCccCCCccEeeCCEEE-----CHHHHhhhcCCCCCC
Confidence 89999999999888999999999 999999999999864
No 54
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=2.4e-10 Score=78.12 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=59.2
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCch-hhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLR-SDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~-~~y~~~~~~~C 148 (201)
+|..|++++....+....|+.|- +.| |.|..|+++|.++.|++.||++| |. .||.++|+++|
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~cy~~~f~~~C 64 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWH----------RPC--LKCEKCGKTLTSGGHAEHEGKPY-----CNHPCYSAMFGPKG 64 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEE----------TTT--CBCTTTCCBCCTTTEEEETTEEE-----ETTTHHHHHSSCCC
T ss_pred cCCCCCCEEECceEEEECCcccc----------CCC--CCccccCccCCCCceECcCCeEe-----eCHHHHHHHhCccC
Confidence 58899999875555555566665 445 99999999999989999999999 99 69999999999
Q ss_pred CCCCCcccC
Q psy2231 149 NTSHTMIPD 157 (201)
Q Consensus 149 ~~C~~~I~~ 157 (201)
.+|++++..
T Consensus 65 ~~C~~~~~~ 73 (76)
T 1iml_A 65 FGRGGAESH 73 (76)
T ss_dssp SSCCCSSSC
T ss_pred CCcCCceee
Confidence 999977643
No 55
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.01 E-value=7.3e-10 Score=76.60 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=50.6
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++.......-.++.|- +.| |.|..|+++|.+..|++.+|++| |..||.++|+++|
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~c 70 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFH----------RCC--FLCMVCRKNLDSTTVAIHDAEVY-----CKSCYGKKYGPKG 70 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEE----------SSS--EECSSSCCEECSSCCEEETTEEE-----CSHHHHHHCC---
T ss_pred CcCcCcCccccCceeEEeCCcccc----------ccc--CccCCCCCCCCCCCeEeeCCEEE-----CHHHHHHHhCCcc
Confidence 378999999965555555666666 445 99999999999989999999999 9999999999999
Q ss_pred CCCCCc
Q psy2231 149 NTSHTM 154 (201)
Q Consensus 149 ~~C~~~ 154 (201)
.+|++-
T Consensus 71 ~gcg~g 76 (81)
T 1a7i_A 71 YGYGQG 76 (81)
T ss_dssp ------
T ss_pred cccCCc
Confidence 999864
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=3.4e-10 Score=78.30 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=48.4
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEe-CCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSL-SVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~-~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++.+. +..-.++.| ++.| |.|..|+++|.+..|... +|++| |..||.++|+++|
T Consensus 17 ~C~~C~~~I~~~-~~~a~~~~~----------H~~C--F~C~~C~~~L~~~~f~~~~~g~~y-----C~~cy~~~f~~~C 78 (81)
T 2dlo_A 17 KCATCSQPILDR-ILRAMGKAY----------HPGC--FTCVVCHRGLDGIPFTVDATSQIH-----CIEDFHRKFASGP 78 (81)
T ss_dssp BCTTTCCBCCSC-CEEETTEEE----------CTTT--CBCSSSCCBCTTSCEECCTTCCCE-----EHHHHHHHTTSSS
T ss_pred ccccCCCeecce-eEEECCccc----------cHHh--cCcccCCCccCCCeeEECCCCEEE-----CHHHHHHHhcCcC
Confidence 577788777643 333333443 4455 999999999998888876 78999 9999999999999
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
++
T Consensus 79 ~~ 80 (81)
T 2dlo_A 79 SS 80 (81)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 57
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=5.3e-10 Score=77.35 Aligned_cols=64 Identities=19% Similarity=0.417 Sum_probs=48.9
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++... .+....++.|- +.| |.|..|+++|.++.|++.+|++| |..||.++|++++
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~~ 79 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWH----------KDC--FTCSNCKQVIGTGSFFPKGEDFY-----CVTCHETKFASGP 79 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEE----------TTT--CCCSSSCCCCTTSCEEEETTEEE-----EHHHHHHHTSCCC
T ss_pred cCccCCcccccCceEEEECccccc----------ccc--CchhhCCCccCCCccEeeCCEEE-----CHHHHHHHhCCCC
Confidence 577777777643 23333444444 344 99999999999989999999999 9999999999998
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
+.
T Consensus 80 ~~ 81 (82)
T 1x63_A 80 SS 81 (82)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 58
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=9.6e-10 Score=81.06 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccC--CcEEEeCCeeeeccCCchhhhhhhcCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILS--QTFYSLSVDLYHASMHLRSDCLSMYGGK 147 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~--~~f~~~~g~~yH~~~~C~~~y~~~~~~~ 147 (201)
+|..|++++.+.....-.++ .|++.| |.|..|+++|.. ..|++.||++| |..||.++|+++
T Consensus 5 ~C~~C~~~I~~~~~~~a~~~----------~wH~~C--F~C~~C~~~L~~~g~~~~~~~g~~y-----C~~~y~~~f~~~ 67 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFLKAIDQ----------YWHEDC--LSCDLCGCRLGEVGRRLYYKLGRKL-----CRRDYLRLGGSG 67 (114)
T ss_dssp CBSSSCSCBCSSEEEECSSS----------EECTTT--CCCSSSCSCCCCSSSCCCCBTTBCC-----CHHHHHHHHTSC
T ss_pred CCcCCCCeeCCcEEEEECch----------hHHHhc--CcccccCCchhcCCCeeEEECCeee-----chHHHHHHhCcc
Confidence 68999999876533333344 445666 999999999974 57999999999 999999999999
Q ss_pred CCCCCCcccCcceeecceeeccccCcceeeeeeeCCcceEEEeecCcccc
Q psy2231 148 GNTSHTMIPDTYITQVTIVIARCLSSVYSIQLVKPSIRYRLTYIMPPCTY 197 (201)
Q Consensus 148 C~~C~~~I~~~~i~a~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
|..|.. +.++. |. +...+..+|.....+|+|..
T Consensus 68 c~~c~~---~~~~~--------~~------~~~~~g~~f~~~~~~~~C~~ 100 (114)
T 1j2o_A 68 GHMGSG---GDVMV--------VG------EPTLMGGEFGDEDERLITRL 100 (114)
T ss_dssp CSSCBS---CSCCC--------SS------CSSTTSSBCCCSSSCCCEEE
T ss_pred cCcCCC---CceeE--------cC------CccCCCCeeEEcCCEeecch
Confidence 998862 33322 11 33345678888888888864
No 59
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=3.9e-09 Score=70.59 Aligned_cols=63 Identities=17% Similarity=0.388 Sum_probs=52.8
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGN 149 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~ 149 (201)
+|..|++++.+. ++...++.|- +.| |.|..|+++|.+..|++.+|++| |..||.++|+++|+
T Consensus 7 ~C~~C~~~I~~~-~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~C~ 68 (69)
T 2cur_A 7 GCVKCNKAITSG-GITYQDQPWH----------ADC--FVCVTCSKKLAGQRFTAVEDQYY-----CVDCYKNFVSGPSS 68 (69)
T ss_dssp CCSSSCCCCCTT-CEEETTEEEC----------TTT--TBCTTTCCBCTTSCEEECSSCEE-----EHHHHHHHHTCSCC
T ss_pred CCcccCCEeCcc-eEEECccccc----------cCc--CEECCCCCCCCCCccEeECCEEE-----CHHHhHHHhcCCCC
Confidence 688999998753 4555555555 455 99999999999989999999999 99999999999997
Q ss_pred C
Q psy2231 150 T 150 (201)
Q Consensus 150 ~ 150 (201)
+
T Consensus 69 g 69 (69)
T 2cur_A 69 G 69 (69)
T ss_dssp C
T ss_pred C
Confidence 5
No 60
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=5.5e-09 Score=71.24 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=54.5
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCch-hhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLR-SDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~-~~y~~~~~~~C 148 (201)
+|..|++++....+..-.++.|- +.| |.|..|+++|.++.|++.||++| |. .||.++|+++|
T Consensus 11 ~C~~C~~~I~~~~~v~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~cy~~~f~~kc 73 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVSSLGKDWH----------KFC--LKCERCSKTLTPGGHAEHDGKPF-----CHKPCYATLFGSGP 73 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEE----------TTT--CBCSSSCCBCCTTSCEEETTEEE-----CTTTHHHHHSCSSC
T ss_pred CCcCCCCEeECCeEEEECCeEee----------CCC--CCCCCCCCccCCCceEeECCEEe-----cchHHHHHhccccc
Confidence 78999999986666666666666 345 99999999999989999999999 99 79999999999
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
.+
T Consensus 74 ~g 75 (76)
T 2cu8_A 74 SS 75 (76)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 61
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.86 E-value=4.5e-09 Score=71.75 Aligned_cols=66 Identities=12% Similarity=0.263 Sum_probs=55.1
Q ss_pred ccCCCCCcCCC---CceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCC
Q psy2231 70 RCENCNKTLVP---GSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGG 146 (201)
Q Consensus 70 ~C~~C~~~L~~---~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~ 146 (201)
+|..|++++.+ ..+....++.|- +.| |.|..|+++|.+..|++.||++| |..||.++|++
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH----------~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~cy~~~f~~ 69 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWH----------SEC--FNCGKCSVSLVGKGFLTQNKEIF-----CQKCGSGMDTD 69 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEE----------GGG--CBCTTTCCBCSSSCEEEETTEEE-----ETTTTCCCCCC
T ss_pred CCccCCCcccCCCCceeEEECCcccC----------ccc--CChhhCCCcCCCCceEeECCEEE-----CHHHhhhhhCC
Confidence 67889999875 345555555555 455 99999999999989999999999 99999999999
Q ss_pred CCCCCC
Q psy2231 147 KGNTSH 152 (201)
Q Consensus 147 ~C~~C~ 152 (201)
+|+.++
T Consensus 70 ~C~~~s 75 (76)
T 1x68_A 70 ISGPSS 75 (76)
T ss_dssp SSSSSC
T ss_pred cCCCCC
Confidence 999875
No 62
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.86 E-value=2.2e-09 Score=74.04 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=31.5
Q ss_pred eeeCCCCcccc-CCcEE-EeCCeeeeccCCchhhhhhhcCCCCCC
Q psy2231 108 LGCLSSVCSIL-SQTFY-SLSVDLYHASMHLRSDCLSMYGGKGNT 150 (201)
Q Consensus 108 F~C~~C~~~l~-~~~f~-~~~g~~yH~~~~C~~~y~~~~~~~C~~ 150 (201)
|.|..|+++|. +..|. +.+|++| |..||.++|++.|++
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~-----C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLY-----CGKCHNEVVSGPSSG 81 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEE-----EHHHHHHHHCTTSCC
T ss_pred CCccCCCCccCCCCcEEEeeCCEEE-----CHHHHHHHhcCCCCC
Confidence 89999999996 46677 4888999 999999999888764
No 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=7.7e-09 Score=69.59 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=52.8
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++... ......|+.|- +.| |.|..|+++|.++.|++.+|++| |..||.++|+++|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~C 69 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWH----------EHC--FLCSGCEQPLGSRSFVPDKGAHY-----CVPCYENKFASGP 69 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEE----------TTT--CBCTTTCCBTTTSCEEEETTEEE-----EHHHHHHHTSCCC
T ss_pred CCccCCCccccCccEEEECccccC----------ccc--CeECCCCCcCCCCccCCcCCeEE-----CHHHHHHHccCcC
Confidence 678999998753 44444555554 455 99999999999999999999999 9999999999999
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
+.
T Consensus 70 ~~ 71 (72)
T 1wyh_A 70 SS 71 (72)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 64
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=1.1e-08 Score=68.87 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=54.1
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++.+. ......|+.|- +.| |.|..|+++|.++.|++.||++| |..||.++|+++|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~C 69 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWH----------ETC--FICHRCQQPIGTKSFIPKDNQNF-----CVPCYEKQHASGP 69 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEE----------TTT--TCCSSSCCCCCSSSEEEETTEEE-----EHHHHHHHTSSCC
T ss_pred CCccCCCcccCCceEEEECcCeec----------ccC--CcccccCCccCCCccCccCCeEE-----CHHHHhHHhCCCC
Confidence 688999999865 45555666666 344 89999999999999999999999 9999999999999
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
+.
T Consensus 70 ~~ 71 (72)
T 1x4k_A 70 SS 71 (72)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 65
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.81 E-value=8.6e-09 Score=69.02 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=51.7
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGN 149 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~ 149 (201)
+|..|++++.+. +..-.++.|- +.| |.|..|+++|.++.|++.||++| |..||.++|+++|+
T Consensus 7 ~C~~C~~~I~~~-~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 7 GCVQCKKPITTG-GVTYREQPWH----------KEC--FVCTACRKQLSGQRFTARDDFAY-----CLNCFCDLYASGPS 68 (70)
T ss_dssp BCSSSCCBCCSS-EEESSSSEEE----------TTT--SBCSSSCCBCTTSCCEESSSSEE-----CHHHHHHHTCCCCT
T ss_pred CCcccCCeeccc-eEEECccccC----------CCC--CccCCCCCcCCcCceEeeCCeEE-----CHHHHHHHhccccC
Confidence 688999998753 3444444444 556 99999999999999999999999 99999999999997
Q ss_pred C
Q psy2231 150 T 150 (201)
Q Consensus 150 ~ 150 (201)
+
T Consensus 69 ~ 69 (70)
T 2d8z_A 69 S 69 (70)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=1.1e-08 Score=70.71 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=52.4
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++....+....++.|- +.| |.|..|+++|.+ .|++.||++| |+.||.++|+++|
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH----------~~C--F~C~~C~~~L~~-~~~~~~g~~y-----C~~~y~~~fg~~C 77 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWH----------VSC--FKCQTCSVILTG-EYISKDGVPY-----CESDYHAQFGSGP 77 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEEC----------TTT--CBCSSSCCBCSS-CCEEETTEEE-----CTTHHHHHTTCCS
T ss_pred CCCcCcCCeeCCCeEEEECCcccc----------ccc--CCcCcCCCCcCC-CeEEECCEEE-----CHHHHHHHcCCCC
Confidence 368999999875555555555554 556 999999999986 6999999999 9999999999999
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
++
T Consensus 78 ~~ 79 (80)
T 2dj7_A 78 SS 79 (80)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 67
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=1.7e-08 Score=71.08 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=52.3
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGN 149 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~ 149 (201)
+|..|++++.+ .+..-.|+.|- +.| |.|..|+++|.+..|++.+|++| |..||.++|+++|+
T Consensus 27 ~C~~C~~~I~~-~~v~a~~~~~H----------~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~cy~~~f~~~c~ 88 (90)
T 2dar_A 27 MCAHCNQVIRG-PFLVALGKSWH----------PEE--FNCAHCKNTMAYIGFVEEKGALY-----CELCYEKFFASGPS 88 (90)
T ss_dssp BBSSSCCBCCS-CEEEETTEEEC----------TTT--CBCSSSCCBCSSSCBEESSSCEE-----CHHHHHHHTSCCCC
T ss_pred CCccCCCEecc-eEEEECCcccc----------ccC--CccCCCCCCCCCCEeEeECCEEE-----CHHHHHHHcCCCCC
Confidence 78899998854 44444555554 556 99999999999989999999999 99999999999997
Q ss_pred C
Q psy2231 150 T 150 (201)
Q Consensus 150 ~ 150 (201)
.
T Consensus 89 s 89 (90)
T 2dar_A 89 S 89 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=1.2e-08 Score=69.43 Aligned_cols=63 Identities=19% Similarity=0.384 Sum_probs=50.8
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++... ......|+.|- +.| |.|..|+++|.++.|++.||++| |+.||.++|+++|
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~y~~~f~~~C 75 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYH----------EQC--FVCAQCFQQFPEGLFYEFEGRKY-----CEHDFQMLFAPCW 75 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEEC----------TTT--CCCTTTCCCCGGGCSEEETTEEE-----CHHHHHHHCCCC-
T ss_pred CchhcCCccCCCceEEEeCccEec----------ccc--CeECCCCCCCCCCCeEeECCeEe-----CHHHHHHHhhccc
Confidence 689999998743 44445556555 455 99999999999989999999999 9999999999999
Q ss_pred C
Q psy2231 149 N 149 (201)
Q Consensus 149 ~ 149 (201)
.
T Consensus 76 ~ 76 (77)
T 1g47_A 76 I 76 (77)
T ss_dssp -
T ss_pred C
Confidence 6
No 69
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.68 E-value=3.2e-08 Score=69.83 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=54.7
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++.+.......++.|- +.| |.|..|+++|.+..|++.||++| |..||.++|+++|
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~y~~~f~~kc 78 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFH----------ISC--FRCSYCNNKLSLGTYASLHGRIY-----CKPHFNQLFKSKG 78 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEE----------TTT--CBCTTTCCBCCTTTCCCSSSCCC-----CHHHHHHHSCCCS
T ss_pred CcCccCCCccCCceeEEECCCEEC----------CCC--CeeCCCCCCCCCCCcEeECCEEE-----CHHHHHHHhCCCc
Confidence 378999999976555555555555 445 99999999999988999999999 9999999999999
Q ss_pred CCC
Q psy2231 149 NTS 151 (201)
Q Consensus 149 ~~C 151 (201)
.-+
T Consensus 79 ~~~ 81 (91)
T 2d8y_A 79 NYD 81 (91)
T ss_dssp CCC
T ss_pred Ccc
Confidence 843
No 70
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.66 E-value=3.4e-08 Score=65.33 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=49.0
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGK 147 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~ 147 (201)
+|..|++++. ..+..-.|+.|- +.| |.|..|+++|.++.|++.||++| |..||.++|+++
T Consensus 7 ~C~~C~~~I~-~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~y~~~f~~k 66 (66)
T 1nyp_A 7 ICGACRRPIE-GRVVNAMGKQWH----------VEH--FVCAKCEKPFLGHRHYERKGLAY-----CETHYNQLFGDV 66 (66)
T ss_dssp EETTTTEECC-SCEECCTTSBEE----------TTT--CBCTTTCCBCSSSCCEEETTEEE-----CHHHHHHHCSCC
T ss_pred CCcccCCEec-ceEEEECccccc----------cCc--CEECCCCCCCCCCceEeECCcEE-----CHHHHHHHhCCC
Confidence 6889999887 344444444444 556 99999999999999999999999 999999999975
No 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.66 E-value=4.5e-08 Score=65.86 Aligned_cols=63 Identities=11% Similarity=0.283 Sum_probs=50.8
Q ss_pred ccCCCCCcCCC---CceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCC
Q psy2231 70 RCENCNKTLVP---GSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGG 146 (201)
Q Consensus 70 ~C~~C~~~L~~---~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~ 146 (201)
+|..|++++.+ ..+....++.| ++.| |.|..|+++|.++.|++.+|++| |..||.++|++
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~w----------H~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~c~~~~~~p 69 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQW----------HNDC--FNCKKCSLSLVGRGFLTERDDIL-----CPDCGKDISGP 69 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEE----------CTTT--CBCSSSCCBCTTSCCEECSSSEE-----CHHHHHTCCCS
T ss_pred CCcCCCccccCCCCcceEEECCccc----------Cccc--CEeccCCCcCCCCccEeECCEEE-----ChhHcCcccCC
Confidence 68999999875 24433344444 4556 99999999999999999999999 99999999999
Q ss_pred CCC
Q psy2231 147 KGN 149 (201)
Q Consensus 147 ~C~ 149 (201)
++.
T Consensus 70 ~~g 72 (72)
T 1x4l_A 70 SSG 72 (72)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 72
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.66 E-value=4.6e-08 Score=68.69 Aligned_cols=64 Identities=13% Similarity=0.293 Sum_probs=51.9
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++.+ .+..-.++ .|++.| |.|..|+++|.++.|++.||++| |..||.++|++++
T Consensus 26 ~~C~~C~~~I~~-~~~~a~~~----------~~H~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~y~~~f~p~~ 87 (89)
T 1x64_A 26 PLCDKCGSGIVG-AVVKARDK----------YRHPEC--FVCADCNLNLKQKGYFFVEGELY-----CETHARARTSGPS 87 (89)
T ss_dssp CBCTTTCCBCCS-CCEESSSC----------EECTTT--CCCSSSCCCTTTSCCEEETTEEE-----CHHHHHHHSSSCC
T ss_pred CCcccCCCEecc-cEEEECCc----------eECccC--CEecCCCCCCCCCCeEeECCEEE-----CHHHHHHHhCCCC
Confidence 478999998876 33333333 445666 99999999999888999999999 9999999999998
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
.+
T Consensus 88 ~g 89 (89)
T 1x64_A 88 SG 89 (89)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 73
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=4.1e-08 Score=67.43 Aligned_cols=64 Identities=9% Similarity=0.205 Sum_probs=51.7
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++.+. +..-.++ .|++.| |.|..|+++|.+..|++.||++| |..||.++|++++
T Consensus 16 ~~C~~C~~~I~~~-~~~a~~~----------~~H~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~cy~~~~~p~g 77 (79)
T 1x62_A 16 PMCDKCGTGIVGV-FVKLRDR----------HRHPEC--YVCTDCGTNLKQKGHFFVEDQIY-----CEKHARERVSGPS 77 (79)
T ss_dssp CCCSSSCCCCCSS-CEECSSC----------EECTTT--TSCSSSCCCHHHHCCEESSSCEE-----CHHHHHHHHSSCC
T ss_pred CccccCCCCccCc-EEEECcc----------eeCcCc--CeeCCCCCCCCCCCeEeECCEEE-----CHHHHHHHhCCCC
Confidence 3789999998763 4333333 445666 99999999998888999999999 9999999999987
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
.+
T Consensus 78 ~g 79 (79)
T 1x62_A 78 SG 79 (79)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 74
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.56 E-value=1.6e-07 Score=62.74 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=51.1
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKGN 149 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C~ 149 (201)
+|..|++++.+ .+....++.|. +.| |.|..|+++|.+..|++.+|++| |..||.++|+++..
T Consensus 7 ~C~~C~~~I~~-~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 7 GCHQCGEFIIG-RVIKAMNNSWH----------PEC--FRCDLCQEVLADIGFVKNAGRHL-----CRPCHNREKASGPS 68 (70)
T ss_dssp BCSSSCCBCCS-CCEEETTEEEC----------TTT--SBCSSSCCBCSSSCCEEETTEEE-----CHHHHHHHHCCCSC
T ss_pred cCccCCCEecc-eEEEECccccc----------ccC--CEeCCCCCcCCCCccEeECCeEE-----CHHHhhhhcCCCCC
Confidence 68899998875 44555555555 455 99999999999999999999999 99999999998764
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.48 E-value=2.1e-07 Score=63.98 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=48.6
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
-+|..|++++.+ .+..-.| +.|++.| |.|..|+++|.++.| +.||++| |..||.++|++++
T Consensus 16 ~~C~~C~~~I~~-~~v~a~~----------~~~H~~C--F~C~~C~~~L~~~~f-~~~g~~y-----C~~cy~~~f~p~~ 76 (79)
T 2cor_A 16 YICQKCHAIIDE-QPLIFKN----------DPYHPDH--FNCANCGKELTADAR-ELKGELY-----CLPCHDKMGVSGP 76 (79)
T ss_dssp CBCTTTCCBCCS-CCCCCSS----------SCCCTTT--SBCSSSCCBCCTTCE-EETTEEE-----CHHHHHTTSCCSS
T ss_pred CCCccCCCEecc-eEEEECc----------ceeCCCC--CEeCCCCCccCCCCE-eECCEEe-----CHHHHHHhCCCCC
Confidence 378899998873 3333233 3455677 999999999998755 9999999 9999999999976
Q ss_pred C
Q psy2231 149 N 149 (201)
Q Consensus 149 ~ 149 (201)
.
T Consensus 77 s 77 (79)
T 2cor_A 77 S 77 (79)
T ss_dssp C
T ss_pred C
Confidence 5
No 76
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.48 E-value=2.6e-07 Score=62.01 Aligned_cols=63 Identities=14% Similarity=0.315 Sum_probs=49.2
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcCCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYGGKG 148 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~C 148 (201)
+|..|++++.+. ......++.|- +.| |.|..|+++|.+..|++.+|++| |..||.++|+ +|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~~~~y-----C~~cy~~~~~-~~ 68 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFH----------VGC--FVCSTCRAQLRGQHFYAVERRAY-----CEGCYVATLE-SG 68 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEEC----------TTT--CBCSSSCCBCTTSCEEESSSCEE-----EHHHHHHHHH-TC
T ss_pred CCccCCCccCCCceEEEECCCeEc----------ccC--CcccccCCcCCcCcCEeeCCeEE-----CHHHHHHHHc-cC
Confidence 688999988753 34444444444 556 99999999998888999999999 9999999885 45
Q ss_pred CC
Q psy2231 149 NT 150 (201)
Q Consensus 149 ~~ 150 (201)
..
T Consensus 69 ~~ 70 (72)
T 1x61_A 69 PS 70 (72)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.46 E-value=1.4e-07 Score=70.17 Aligned_cols=75 Identities=9% Similarity=0.195 Sum_probs=58.1
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccc-cCCcEEEeCCeeeeccCCchhhhhhhcCCC
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSI-LSQTFYSLSVDLYHASMHLRSDCLSMYGGK 147 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l-~~~~f~~~~g~~yH~~~~C~~~y~~~~~~~ 147 (201)
+|..|++++... ...... .+.|++.| |.|..|+++| .+..|++.+|++| |..||.++|+++
T Consensus 10 ~C~~C~~~I~~~e~~~~a~----------~~~~H~~C--F~C~~C~~~L~~g~~f~~~~g~~y-----C~~cy~~~~~~~ 72 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK----------DKVYHLEC--FKCAACQKHFSVGDRYLLINSDIV-----CEQDIYEWTKIN 72 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS----------SCCCCTTT--CBCTTTCCBCCTTCEEEECSSSEE-----EGGGHHHHHHHH
T ss_pred cccCCCCeecCCceEEEEC----------Cccccccc--CccccCCCCCCCCCcEEeeCCEEE-----cHHHhHHHhccc
Confidence 588899988753 222222 34556677 9999999999 5667999999999 999999999999
Q ss_pred CCCCCCcccCccee
Q psy2231 148 GNTSHTMIPDTYIT 161 (201)
Q Consensus 148 C~~C~~~I~~~~i~ 161 (201)
|+.++.++....+.
T Consensus 73 ~~~~~~~~~~~~~~ 86 (123)
T 2l3k_A 73 GGSGGSGGSGGDVM 86 (123)
T ss_dssp TCCCCCCSCCSCCE
T ss_pred cCCCCCCCccCCCc
Confidence 99988877654443
No 78
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.39 E-value=5.7e-07 Score=59.93 Aligned_cols=59 Identities=20% Similarity=0.490 Sum_probs=48.5
Q ss_pred ccCCCCCcCCCCce-eeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC
Q psy2231 70 RCENCNKTLVPGSH-SEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG 145 (201)
Q Consensus 70 ~C~~C~~~L~~~~f-~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~ 145 (201)
+|..|++++.+... ....|+.|- +.| |.|..|+++|.++.|++.||++| |..||.++|+
T Consensus 13 ~C~~C~~~i~~~e~~~~~~~~~~H----------~~C--F~C~~C~~~L~~~~~~~~~g~~y-----C~~~y~~lf~ 72 (72)
T 3f6q_B 13 TCERCKGGFAPAEKIVNSNGELYH----------EQC--FVCAQCFQQFPEGLFYEFEGRKY-----CEHDFQMLFA 72 (72)
T ss_dssp BCTTTCCBCCTTCEEEEETTEEEE----------TTT--SSCTTTCCCCGGGCCEEETTEEE-----CHHHHHHHTC
T ss_pred cchhcCccccCCceEEEeCcCeeC----------cCC--CcccCCCCCCCCCCeEeECCeEe-----CHHHHHHhhC
Confidence 78999999886543 345666665 345 89999999999889999999999 9999999886
No 79
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.3e-07 Score=64.31 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=51.3
Q ss_pred CeeeeccCCchhhhhhhcCCCCCCCCCcccC-----cceeecce-eeccccCcceeeeeeeCCcceEEEeecCccc
Q psy2231 127 VDLYHASMHLRSDCLSMYGGKGNTSHTMIPD-----TYITQVTI-VIARCLSSVYSIQLVKPSIRYRLTYIMPPCT 196 (201)
Q Consensus 127 g~~yH~~~~C~~~y~~~~~~~C~~C~~~I~~-----~~i~a~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
|++| |++||.++|+++|++|+++|.+ ..|.|++. +|..|++ +....+...+.+|.....+|+|.
T Consensus 2 ~~~y-----C~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~-C~~C~~~L~~~~f~~~~~~~yC~ 71 (77)
T 2egq_A 2 SSGS-----SGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFH-CKKCSVNLANKRFVFHQEQVYCP 71 (77)
T ss_dssp CSSC-----CTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCB-CSSSCCBCTTSCCCEETTEECCH
T ss_pred CCeE-----chhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCE-ehhcCCCCCCCccEeECCEEECh
Confidence 4566 9999999999999999999997 88999995 5777753 44566666677888887888874
No 80
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.30 E-value=1.3e-06 Score=57.68 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=45.3
Q ss_pred ccCCCCCcCCCC-ceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEEEeCCeeeeccCCc-hhhhhhh
Q psy2231 70 RCENCNKTLVPG-SHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFYSLSVDLYHASMHL-RSDCLSM 143 (201)
Q Consensus 70 ~C~~C~~~L~~~-~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~~~~g~~yH~~~~C-~~~y~~~ 143 (201)
+|..|++++... ....-.|+.|-. .+.| |.|..|+++|.++.|++.||++| | .+||.++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~--------~~~C--F~C~~C~~~L~~~~f~~~~g~~y-----C~~~C~~k~ 64 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHA--------STEC--FLCSCCSKCLIGQKFMPVEGMVF-----CSVECKKRM 64 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEET--------TTTT--SBCTTTCCBCTTSCCEEETTEEE-----SSHHHHHTT
T ss_pred CCcCCCCeeccCceEEEECCCccCC--------CCCC--EECCCCCCcCCCCceEEECCEEe-----cCHHHhhhh
Confidence 588999988753 454444444440 0566 99999999999999999999999 9 8888764
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.27 E-value=5.9e-07 Score=62.11 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=48.8
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCcEE--EeCCeeeeccCCchhhhhhhcCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQTFY--SLSVDLYHASMHLRSDCLSMYGGK 147 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~f~--~~~g~~yH~~~~C~~~y~~~~~~~ 147 (201)
+|..|++++.......-.++ .|++.| |.|..|+++|.+..|. +.||++| |+.||.++|+.-
T Consensus 17 ~C~~C~~~I~~~e~v~a~~~----------~wH~~C--F~C~~C~~~L~~~~~~~~~~~g~~y-----C~~~y~~~~~~~ 79 (82)
T 2co8_A 17 LCALCGEHLYVLERLCVNGH----------FFHRSC--FRCHTCEATLWPGGYEQHPGDGHFY-----CLQHLPQTDSGP 79 (82)
T ss_dssp BCSSSCCBCCTTTBCCBTTB----------CCBTTT--CBCSSSCCBCCTTSEECCTTTCCCE-----ETTTCCCCCCCC
T ss_pred CCcccCCCcccceEEEECCC----------eeCCCc--CEEcCCCCCcCCCceeEeCcCCEEE-----ChHHHHhhhcCC
Confidence 68999998865444333344 445566 9999999999998888 5799999 999999998875
Q ss_pred CC
Q psy2231 148 GN 149 (201)
Q Consensus 148 C~ 149 (201)
+.
T Consensus 80 ~~ 81 (82)
T 2co8_A 80 SS 81 (82)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.27 E-value=9.1e-07 Score=66.03 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=48.4
Q ss_pred cccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCcccc--CCcEEEeCCeeeeccCCchhhhhhhcC
Q psy2231 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSIL--SQTFYSLSVDLYHASMHLRSDCLSMYG 145 (201)
Q Consensus 69 F~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~--~~~f~~~~g~~yH~~~~C~~~y~~~~~ 145 (201)
-+|..|++++.+.....-.|+.|- +.| |.|..|+++|. +..|++.+|++| |..||.++|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH----------~~C--F~C~~C~~~L~~~g~~f~~~dg~~y-----C~~cy~~~Fg 123 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWH----------SRC--LKCSSCQAQLGDIGTSSYTKSGMIL-----CRNDYIRLFG 123 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEE----------TTT--SBCTTTCCBGGGTTCCCBCSSSCCB-----CHHHHHHHCC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEc----------ccc--cCcCcCCCcccccCCceEEECCEEe-----CHHHhhhhcC
Confidence 478999999976544555555555 455 99999999996 568999999999 9999999886
No 83
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.24 E-value=1.3e-06 Score=59.04 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=47.6
Q ss_pred ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCcccc-CCcEEEeCCeeeeccCCchhhhhhhcCCC
Q psy2231 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSIL-SQTFYSLSVDLYHASMHLRSDCLSMYGGK 147 (201)
Q Consensus 70 ~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~-~~~f~~~~g~~yH~~~~C~~~y~~~~~~~ 147 (201)
+|..|++++.+ .+..-. .+.|++.| |.|..|+++|. +..|++.+|++| |..||.++++.+
T Consensus 7 ~C~~C~~~I~~-~~v~a~----------~~~wH~~C--F~C~~C~~~L~~~~~f~~~~~~~y-----C~~C~~~~~~~~ 67 (73)
T 1wig_A 7 GCDSCEKYITG-RVLEAG----------EKHYHPSC--ALCVRCGQMFAEGEEMYLQGSSIW-----HPACRQAARTED 67 (73)
T ss_dssp SCSSSCCCCSS-CCBCCS----------SCCBCTTT--SCCSSSCCCCCSSCCCEEETTEEE-----CTTHHHHTSSSS
T ss_pred CcccCCCEecC-eeEEeC----------CCCCCCCc--CEeCCCCCCCCCCCeeEeeCCEEE-----ChHHChHhhccc
Confidence 67899999876 333222 34556777 99999999998 778999999999 999999988754
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.14 E-value=1.4e-06 Score=59.85 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=45.3
Q ss_pred CchhhhhhhcCCCCCCCCCcccCcceeecce-eeccccCcceeeeeeeCCcceEEEeecC-ccc
Q psy2231 135 HLRSDCLSMYGGKGNTSHTMIPDTYITQVTI-VIARCLSSVYSIQLVKPSIRYRLTYIMP-PCT 196 (201)
Q Consensus 135 ~C~~~y~~~~~~~C~~C~~~I~~~~i~a~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~-~~~ 196 (201)
||+.||.++|+++|.+|+++|.++.|.|++. +|..|++ +....+...++.++.....+ +|.
T Consensus 5 yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~-C~~C~~~L~~~~~~~~~~~~~~C~ 67 (81)
T 1v6g_A 5 SSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFV-CAVCRLPFPPGDRVTFNGKECMCQ 67 (81)
T ss_dssp CCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSS-CSSSCCCCCSSSCEEEETTEEEEH
T ss_pred cchHHHHhHhCCcCccccCEeccceEEECCceeCccCCc-cccCCCCCCCCCEEEeCCCCEECh
Confidence 4999999999999999999999999999996 5667754 44555555555555544442 553
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.85 E-value=3.5e-06 Score=47.90 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=25.5
Q ss_pred ccCCCCCeeeecceEEeCCCcccCCCc
Q psy2231 43 NAINLPNSMYLAERKTSLGKDWHGSCL 69 (201)
Q Consensus 43 ~cc~C~~~i~~~~~v~a~g~~wH~~CF 69 (201)
.|.+|++.|++.|.+.++|+.||..||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 488999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=79.62 E-value=0.33 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=10.1
Q ss_pred eccccCcceeeeeeeCCcceE
Q psy2231 167 IARCLSSVYSIQLVKPSIRYR 187 (201)
Q Consensus 167 ~~~c~~~~~~~~~~~~~~~~~ 187 (201)
|++|.+.||.++++.-+++.|
T Consensus 6 C~~C~k~Vy~~Ek~~~~g~~~ 26 (31)
T 1zfo_A 6 CARCGKIVYPTEKVNCLDKFW 26 (31)
T ss_dssp CSSSCSBCCGGGCCCSSSSCC
T ss_pred CCccCCEEecceeEEECCeEe
Confidence 344444555555555544443
No 87
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.90 E-value=2.6 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=13.7
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCc
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCL 69 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF 69 (201)
|.-|...|..+.....-+..||..|+
T Consensus 18 C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 18 CNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CcchhhHcccCCccCCCCchhhHHHH
Confidence 66677766544433333445555554
No 88
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.48 E-value=17 Score=25.04 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCCCCeeeecceEEeCC-----CcccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccc
Q psy2231 45 INLPNSMYLAERKTSLG-----KDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSAL 100 (201)
Q Consensus 45 c~C~~~i~~~~~v~a~g-----~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~ 100 (201)
|.|++.- .++.|.-.+ .+||..|.. |...+ .++.|| ..|-.++
T Consensus 39 CiC~~~~-~g~MI~CD~~dC~~~WfH~~CVg-------l~~~p----~g~W~C-p~C~~~~ 86 (91)
T 1weu_A 39 CLCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTKP----RGKWFC-PRCSQES 86 (91)
T ss_dssp STTCCBC-CSCCCCCSCSSCSCCCCCSTTTT-------CSSCC----CSSCCC-TTTCCCC
T ss_pred EECCCCC-CCCEeEecCCCCCCCCEecccCC-------cCcCC----CCCEEC-cCccCcC
Confidence 3777763 455555444 568888753 32211 367888 4775543
No 89
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.62 E-value=7.4 Score=24.20 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=31.5
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~~i 160 (201)
+.|..|...+... ....=|..| |..|..+.+ ...|..|.++|..+.|
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRF-----CESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCC-----CHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCCCCCChHhcCe-eECCCCCHH-----HHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 5677776655432 223446666 999988766 3679999999876543
No 90
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.11 E-value=8.2 Score=24.34 Aligned_cols=47 Identities=9% Similarity=-0.111 Sum_probs=31.3
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC-----CCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG-----GKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~-----~~C~~C~~~I~~~~i 160 (201)
+.|..|...+.. .....=|..| |..|..+.+. ..|..|.++|..+.+
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~f-----C~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNF-----CLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEE-----EHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChh-----hHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 456666665543 2333456777 9999887663 479999999876543
No 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=60.34 E-value=11 Score=24.12 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC---CCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG---GKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~---~~C~~C~~~I~~~~ 159 (201)
|.|..|...+.. .....-|..| |..|..+.+. ..|..|++++....
T Consensus 9 ~~C~IC~~~~~~-Pv~~~CgH~f-----c~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 9 FRCPISLELMKD-PVIVSTGQTY-----ERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSCTTTSCCCSS-EEEETTTEEE-----EHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CCCCCccccccC-CEEcCCCCee-----cHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 667777766543 4555678889 9999877654 46999999987553
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.48 E-value=9.5 Score=24.17 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=30.6
Q ss_pred eeeCCCCccccCCcEEE-eCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYS-LSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~-~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~ 159 (201)
+.|..|...+.. .... .=|..| |..|..+.+ ...|..|.++|....
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTF-----CKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEE-----CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCChHHHC-cCEECCCCCHH-----HHHHHHHHHHcCCcCCCcCcccCccc
Confidence 456677665543 2222 446777 888886654 578999999997654
No 93
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=52.35 E-value=8.3 Score=25.47 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=31.3
Q ss_pred eeeCCCCccccCC--cEEE-eCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQ--TFYS-LSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~--~f~~-~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~~i~ 161 (201)
+.|..|-.++... .+.. .=|..+ |..|+.+.. ...|..|.+++..+.+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~f-----C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQI-----CRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCC-----CHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred CcCCccCccCccccccccccCCCCCc-----CHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4566666655322 1211 135666 999998765 46899999999876543
No 94
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=51.44 E-value=12 Score=22.64 Aligned_cols=50 Identities=6% Similarity=-0.031 Sum_probs=32.6
Q ss_pred eeeCCCCccccCC-----c-EEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCcceee
Q psy2231 108 LGCLSSVCSILSQ-----T-FYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTYITQ 162 (201)
Q Consensus 108 F~C~~C~~~l~~~-----~-f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~i~a 162 (201)
+.|..|...+... . ....=|..| |..|..+.+ ...|..|.++|..+.+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-----CSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-----EHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-----hHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 4566776665321 1 334457778 888876543 568999999998765543
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=50.20 E-value=12 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.310 Sum_probs=19.1
Q ss_pred eeCCCCccccCCcEEEeCCeee
Q psy2231 109 GCLSSVCSILSQTFYSLSVDLY 130 (201)
Q Consensus 109 ~C~~C~~~l~~~~f~~~~g~~y 130 (201)
.|..|...+...+-+..||+.|
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~Y 30 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYY 30 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEE
T ss_pred cCCCCeeEechHHhhhcCCeEE
Confidence 4788888888878889999999
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.76 E-value=18 Score=22.26 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=31.6
Q ss_pred eeeCCCCc-cccCCc---EEEeCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCccee
Q psy2231 108 LGCLSSVC-SILSQT---FYSLSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~-~l~~~~---f~~~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~~i~ 161 (201)
+.|..|.. .+.... ....=|..| |..|..+.+ ...|..|+++|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-----CESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-----EHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-----HHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 34666766 443322 223447777 999987763 46799999999876554
No 97
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.65 E-value=13 Score=24.14 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=30.9
Q ss_pred eeeCCCCccccCC---cEEEeCCeeeeccCCchhhhhhhcC-----CCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQ---TFYSLSVDLYHASMHLRSDCLSMYG-----GKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~---~f~~~~g~~yH~~~~C~~~y~~~~~-----~~C~~C~~~I~~~~i~ 161 (201)
+.|..|...+... .....=|..| |..|..+.+. ..|..|.+++....+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~f-----C~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTI-----CRQCLEKLLASSINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEE-----EHHHHHHHHHHCSSCBCCTTTCCCBCCSSTT
T ss_pred CCCccCCccccccCCCeEECCCCChh-----hHHHHHHHHHcCCCCcCCCCCCCcccchhHH
Confidence 4566666555432 1222346677 8888876542 6799999998765443
No 98
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=45.61 E-value=14 Score=25.88 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=47.1
Q ss_pred eCCCcccCCCc--------ccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCC-----c-EEE
Q psy2231 59 SLGKDWHGSCL--------RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQ-----T-FYS 124 (201)
Q Consensus 59 a~g~~wH~~CF--------~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~-----~-f~~ 124 (201)
.-|-.||..|+ .|..|++.+........ |-+ +. . ..|..|...+... . ...
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l----~i~-~~-----~-----~~C~iC~~~~~~~~~~~~~~~~~ 95 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI----YIG-SG-----T-----VSCPICMDGYSEIVQNGRLIVST 95 (133)
T ss_dssp TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC----BCS-SS-----S-----CBCTTTCCBHHHHHHTTCCEEEE
T ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc----ccC-CC-----C-----CCCCCCCCccccccccCcceEeC
Confidence 34656665554 78889988876543211 110 00 0 3455665554321 1 233
Q ss_pred eCCeeeeccCCchhhhhhh--cCCCCCCCCCcccCccee
Q psy2231 125 LSVDLYHASMHLRSDCLSM--YGGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 125 ~~g~~yH~~~~C~~~y~~~--~~~~C~~C~~~I~~~~i~ 161 (201)
.=|..| |..|..+. ....|..|..+|..+.+.
T Consensus 96 ~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 96 ECGHVF-----CSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp TTSBEE-----EHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCChh-----hHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 447778 77776543 346899999999876554
No 99
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=44.08 E-value=22 Score=25.05 Aligned_cols=51 Identities=4% Similarity=-0.199 Sum_probs=32.0
Q ss_pred eeCCCCccccCCcEEEeCCeeeeccCCchhhhhh---hcCCCCCCCCCcccCcceeecc
Q psy2231 109 GCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLS---MYGGKGNTSHTMIPDTYITQVT 164 (201)
Q Consensus 109 ~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~---~~~~~C~~C~~~I~~~~i~a~~ 164 (201)
.|..|+.||.--.-..-=...+ |.+|+.. +-...|..|+.+|..-.-..+|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-----CydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~ 56 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-----CYDCAILHEKKGDKMCPGCSDPVQRIEQCTRG 56 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-----EHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGG
T ss_pred ecCccCCCeEEEeeeccccccH-----HHHHHHHHHhccCCCCcCcCCeeeeeEEeccC
Confidence 4778888875321111123455 9999976 4457899999999754333444
No 100
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=41.02 E-value=4.4 Score=32.02 Aligned_cols=31 Identities=29% Similarity=0.627 Sum_probs=24.4
Q ss_pred CcccCCCCCcCCCCceeeeCCeeeecCCcccc
Q psy2231 68 CLRCENCNKTLVPGSHSEHDGKPYCNYPCYSA 99 (201)
Q Consensus 68 CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~ 99 (201)
=.+|+.|+.......-...+|+++| .+|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C-~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVC-KPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEEC-HHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEC-hhhhcc
Confidence 3579999988876666678999999 698765
No 101
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.60 E-value=15 Score=25.65 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=30.3
Q ss_pred eeeCCCCccccCCcEEE-eCCeeeeccCCchhhhhhhcCCCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYS-LSVDLYHASMHLRSDCLSMYGGKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~-~~g~~yH~~~~C~~~y~~~~~~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. .... .=|..| |..|........|..|.+++...
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~f-----C~~Ci~~~~~~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIF-----CSNCVSDCIGTGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCB-----CTTTGGGGTTTBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHH-----HHHHHHHHhcCCCcCCCCcCccc
Confidence 456666555432 2222 346667 88888877778899999998644
No 102
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=40.56 E-value=15 Score=28.89 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=25.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhh
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLS 142 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~ 142 (201)
..|..|+..+....-...||+.+ |.+|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~-----C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPV-----CKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEE-----CHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEE-----Chhhhcc
Confidence 67999999988777778899999 9999965
No 103
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.67 E-value=20 Score=22.44 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=32.1
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~i~ 161 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|..|.++|....+.
T Consensus 16 ~~C~IC~~~~~~-~~~~~CgH~f-----C~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 16 PECAICLQTCVH-PVSLPCKHVF-----CYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp CBCSSSSSBCSS-EEEETTTEEE-----EHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCccCCcccCC-CEEccCCCHH-----HHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 556777666533 2333457778 999987644 36799999998765443
No 104
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.11 E-value=26 Score=22.34 Aligned_cols=47 Identities=4% Similarity=-0.077 Sum_probs=27.3
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--------CCCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--------GGKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--------~~~C~~C~~~I~~~~i 160 (201)
+.|..|...+... ....=|..| |..|..+.+ ...|..|.++|....+
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~f-----C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSF-----CQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCB-----CTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCcccCCc-eeCCCCCHH-----HHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3455555444321 112235556 777776543 5789999999886543
No 105
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=36.54 E-value=21 Score=24.00 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=31.2
Q ss_pred eeeCCCCccccCCcEEE-eCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYS-LSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~-~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~ 159 (201)
+.|..|...+.. .... .=|..| |..|..+.+ ...|..|..++....
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNY-----CSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEE-----EHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCcccCChhhCC-cCEECCCCCHh-----hHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 567777666543 2222 457778 888887655 357999999987543
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.36 E-value=20 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred cCCCCCeeeecceEEeCCCcccCCCcccCCCCCcCCCCceeeeCCeeee
Q psy2231 44 AINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYC 92 (201)
Q Consensus 44 cc~C~~~i~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC 92 (201)
|.-|.+.+-+...|..-...-|+-||.|+.= .+.. ....++.||
T Consensus 18 CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~--sIk~---q~~~~EvyC 61 (93)
T 2cs3_A 18 CTICHERLEDTHFVQCPSVPSHKFCFPCSRE--SIKA---QGATGEVYC 61 (93)
T ss_dssp CSSSCSCCSSTTSEECSSCSSCEECHHHHHH--HHHH---HHSSSCCCC
T ss_pred eecchhhhccCceeeCCCccCCeeeccccHH--HHHh---cCCCCcEEC
Confidence 6668888777777888888899999999631 1111 123567888
No 107
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=36.05 E-value=47 Score=19.20 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=24.5
Q ss_pred eeeCCCCccccC--Cc-EEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILS--QT-FYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~--~~-f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~ 157 (201)
..|..|...+.. .. ....=|..| |..|..+.+ ...|..|.++|.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLL-----HRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEE-----ETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcc-----cHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345666655532 11 222335666 555554432 3779999888753
No 108
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=32.46 E-value=17 Score=22.60 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=30.6
Q ss_pred eeeCCCCccccCC-----c-EEEeCCeeeeccCCchhhhhhh--cCCCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQ-----T-FYSLSVDLYHASMHLRSDCLSM--YGGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~-----~-f~~~~g~~yH~~~~C~~~y~~~--~~~~C~~C~~~I~~~~i~ 161 (201)
+.|..|...+... . ....=|..| |..|..+. ....|..|.++|..+.+.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVF-----CSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEE-----EHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChH-----hHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 4566666555321 1 233346777 88887654 347899999998866543
No 109
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.45 E-value=37 Score=21.37 Aligned_cols=45 Identities=4% Similarity=-0.153 Sum_probs=27.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc---------CCCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY---------GGKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~---------~~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|..|.+++...
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~f-----C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSL-----CRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCC-----CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCC-eeECCCCCHH-----HHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 456666555432 1222345556 888887644 45799999998754
No 110
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.90 E-value=22 Score=22.64 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=28.7
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--------CCCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--------GGKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--------~~~C~~C~~~I~~~~i 160 (201)
+.|..|...+... ....=|..| |..|..+.+ ...|..|.++|..+.+
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~f-----C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSF-----CRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCB-----CHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CCCcCCChhhCcc-eeCCCCCHH-----HHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 4456665554332 223345556 888876532 5689999999876543
No 111
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=31.12 E-value=40 Score=24.98 Aligned_cols=45 Identities=7% Similarity=0.149 Sum_probs=33.3
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. .....-|..| |..|..+.+ ..+|..|..+|...
T Consensus 19 ~~C~IC~~~~~~-pv~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALRE-AVQTPCGHRF-----CKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEE-----EHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcC-cEECCCCCHH-----HHHHHHHHHHhCCCCCCCCccCcchh
Confidence 667888776644 3445668888 999998765 35899999998764
No 112
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.13 E-value=22 Score=21.76 Aligned_cols=45 Identities=7% Similarity=-0.013 Sum_probs=27.6
Q ss_pred eeeCCCCccccCC-----c-EEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILSQ-----T-FYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~~-----~-f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~ 157 (201)
+.|..|...+... . ....=|..| |..|..+.+ ...|..|.++|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVF-----CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEE-----EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChh-----cHHHHHHHHHcCCCCCCCCCccCc
Confidence 4456665554321 1 233446777 888876543 5689999998864
No 113
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=24 Score=21.90 Aligned_cols=44 Identities=2% Similarity=-0.088 Sum_probs=29.6
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC--CCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG--GKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~--~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. ....=|..| |..|..+.+. ..|..|.++|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSF-----CQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEE-----CHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcc-----cHHHHHHHHHCcCcCCCcCCcccCC
Confidence 456666666544 344456777 8888876544 6799998888754
No 114
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=29.80 E-value=72 Score=21.72 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=33.5
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~ 159 (201)
|.|..|...+ ........|..| |+.+-.+-+ ...|..|++++....
T Consensus 30 ~~CpI~~~~m-~dPV~~~cGhtf-----~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 30 FRDPLMDTLM-TDPVRLPSGTIM-----DRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TBCTTTCSBC-SSEEEETTTEEE-----EHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred hCCcCccCcc-cCCeECCCCCEE-----chHHHHHHHHcCCCCCCCCCCCChhh
Confidence 7788776654 345666789999 998876554 467999999887543
No 115
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=29.47 E-value=39 Score=20.64 Aligned_cols=44 Identities=2% Similarity=-0.101 Sum_probs=27.1
Q ss_pred eeCCCCccccCCcEEEeCCeeeeccCCchhhhhhh--cCCCCCCCCCcccC
Q psy2231 109 GCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSM--YGGKGNTSHTMIPD 157 (201)
Q Consensus 109 ~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~--~~~~C~~C~~~I~~ 157 (201)
.|..|...+........=|..| |..|..+. ....|..|.++|..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAF-----CYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEE-----STTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCee-----HHHHHHHHHhCcCcCcCCChhhHh
Confidence 4566666654322333346667 77776543 24789999998864
No 116
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=29.38 E-value=57 Score=22.15 Aligned_cols=46 Identities=7% Similarity=-0.189 Sum_probs=33.0
Q ss_pred eeeCCCCccccCCcEEEeCC-eeeeccCCchhhhhhhc--CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYSLSV-DLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g-~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~ 159 (201)
|.|..|...+ ........| ..| |+.+..+-+ ...|..|++++....
T Consensus 23 ~~CpI~~~~m-~dPV~~~cG~htf-----~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 23 FLDPIMSTLM-CDPVVLPSSRVTV-----DRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TBCTTTCSBC-SSEEECTTTCCEE-----EHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cCCcCccccc-cCCeECCCCCeEE-----CHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 6777776654 345666678 888 998876654 467999999987543
No 117
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=29.20 E-value=44 Score=21.87 Aligned_cols=43 Identities=14% Similarity=-0.020 Sum_probs=30.0
Q ss_pred eeeCCCCccccCCcEEEe-CCeeeeccCCchhhhhhhc----CCCCCCCCCccc
Q psy2231 108 LGCLSSVCSILSQTFYSL-SVDLYHASMHLRSDCLSMY----GGKGNTSHTMIP 156 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~-~g~~yH~~~~C~~~y~~~~----~~~C~~C~~~I~ 156 (201)
+.|..|...+.. ..... =|..| |..|....+ ...|..|.+++.
T Consensus 14 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTD-AVVIPCCGNSY-----CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSS-CEECTTTCCEE-----CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcC-ceECCCCCCHH-----HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 567777766543 34444 27888 999987654 258999999973
No 118
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.02 E-value=50 Score=21.06 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=29.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~ 157 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|..|.++|.+
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~f-----C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYF-----CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEE-----EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCcCCCchhcC-eeEccCCCHh-----HHHHHHHHHHCCCcCCCcCccccc
Confidence 456777666533 3344457777 888887654 4679999999863
No 119
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=26.79 E-value=46 Score=22.63 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=31.7
Q ss_pred eeeCCCCccccCCcEEE-eCCeeeeccCCchhhhhhhcC--CCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYS-LSVDLYHASMHLRSDCLSMYG--GKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~-~~g~~yH~~~~C~~~y~~~~~--~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. .... .=|..| |..|....+. ..|..|.++|...
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIECLHSF-----CKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSS-EEEETTTCCEE-----EHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHhC-cCEeCCCCChh-----hHHHHHHHHHhCCcCcCCCcccccc
Confidence 567777666543 3443 567888 9999876653 7799999998753
No 120
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.79 E-value=57 Score=20.52 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=28.5
Q ss_pred eeeCCCCccccCCc--EEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQT--FYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~~--f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~i~ 161 (201)
+.|..|...+.... ....=|..| |..|..+.+ ...|..|.++|....+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLF-----HDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEE-----ETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCeeCCccccCCCCEEEeCCCCee-----cHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45666665554322 122345667 555555432 36799999999875443
No 121
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.71 E-value=60 Score=22.28 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=32.8
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~~i 160 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|..|.++|....+
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLF-----CRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEE-----EHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcHhcC-cEEcCCCCcc-----cHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 567777766543 3344567888 888887544 4689999999876543
No 122
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=25.24 E-value=45 Score=22.91 Aligned_cols=44 Identities=5% Similarity=-0.136 Sum_probs=29.8
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC---CCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG---GKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~---~~C~~C~~~I~~ 157 (201)
+.|..|...+.. .....=|..| |..|..+.+. ..|..|.++|..
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTL-----CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEE-----CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCc-eeEcCCCCHH-----hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 556777655532 2333446777 9999887663 479999998863
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=24.73 E-value=32 Score=27.24 Aligned_cols=55 Identities=5% Similarity=-0.142 Sum_probs=37.1
Q ss_pred cccCCCcccCCCCCcCCCCceeeeCCeeeecCCccccccCCccCceeeCCCCccccCCc
Q psy2231 63 DWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGCLSSVCSILSQT 121 (201)
Q Consensus 63 ~wH~~CF~C~~C~~~L~~~~f~~~~g~~yCe~~cy~~~~~p~C~~F~C~~C~~~l~~~~ 121 (201)
.--+.-|.|..|...+.+ +.....|..|| ..|-.+.+...- ..|..|+.++....
T Consensus 203 ~~~~~~~~c~i~~~~~~d-Pv~~~~gh~f~-~~~i~~~~~~~~--~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMRE-PCITPSGITYD-RKDIEEHLQRVG--HFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCCSTTBCTTTCSBCSS-EEECSSCCEEE-TTHHHHHHHHTC--SSCTTTCCCCCGGG
T ss_pred CCCCcccCCcCcCCHhcC-CeECCCCCEEC-HHHHHHHHHHCC--CCCcCCCCCCchhc
Confidence 344678999999888864 66667899999 688765543211 23677777775433
No 124
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=24.65 E-value=80 Score=22.52 Aligned_cols=45 Identities=7% Similarity=-0.049 Sum_probs=30.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~ 158 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|+.|.++|...
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~f-----c~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSF-----CSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEE-----EHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC-ceECCCCCCc-----cHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 457777766543 3344457777 999887644 46699999998754
No 125
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.58 E-value=35 Score=23.14 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=29.7
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhcC-----CCCCCCCCcccCccee
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMYG-----GKGNTSHTMIPDTYIT 161 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~~-----~~C~~C~~~I~~~~i~ 161 (201)
+.|..|...+... ....=|..| |..|..+.+. ..|..|..+|....+.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~f-----C~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIF-----CKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCC-----CSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCcccChhhcCe-EECCCCCHH-----HHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 4466665554321 222335666 8888876553 3799999999865543
No 126
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=24.11 E-value=71 Score=20.89 Aligned_cols=46 Identities=11% Similarity=-0.054 Sum_probs=32.9
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~~~ 159 (201)
|.|..|...+. .......|..| |+.+-.+-+ ...|..|++++....
T Consensus 15 ~~CpI~~~~m~-dPV~~~cGhtf-----~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 15 FRDPLMDTLMT-DPVRLPSGTVM-----DRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TBCTTTCSBCS-SEEECTTSCEE-----EHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred eECcccCchhc-CCeECCCCCEE-----CHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 77887766543 35566689889 998876543 467999999887543
No 127
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=24.02 E-value=50 Score=24.34 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=28.5
Q ss_pred eeeCCCCccccCCcEEE-eCCeeeeccCCchhhhhhhc---CCCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILSQTFYS-LSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~-~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~ 157 (201)
+.|..|...+.. .... .=|..| |..|..+.+ ...|..|..+|..
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRF-----CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEE-----EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC-cCEeCCCCChh-----HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456666555543 2222 346777 888887654 4569999999864
No 128
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.64 E-value=19 Score=28.96 Aligned_cols=11 Identities=0% Similarity=-0.236 Sum_probs=5.7
Q ss_pred cCCCCCeeeec
Q psy2231 44 AINLPNSMYLA 54 (201)
Q Consensus 44 cc~C~~~i~~~ 54 (201)
|..|.+.|..+
T Consensus 183 C~iC~~iv~~g 193 (238)
T 3nw0_A 183 CNICHSLLIQG 193 (238)
T ss_dssp CTTTCSBCSSC
T ss_pred CcchhhHHhCC
Confidence 55566555433
No 129
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.95 E-value=38 Score=15.63 Aligned_cols=12 Identities=25% Similarity=0.885 Sum_probs=7.5
Q ss_pred cccCCCCCcCCC
Q psy2231 69 LRCENCNKTLVP 80 (201)
Q Consensus 69 F~C~~C~~~L~~ 80 (201)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567777766543
No 130
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=22.63 E-value=40 Score=22.77 Aligned_cols=47 Identities=6% Similarity=-0.022 Sum_probs=31.3
Q ss_pred eeeCCCCccccCCcEE-EeCCeeeeccCCchhhhhhhcC---CCCCCCCCcccCcce
Q psy2231 108 LGCLSSVCSILSQTFY-SLSVDLYHASMHLRSDCLSMYG---GKGNTSHTMIPDTYI 160 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~-~~~g~~yH~~~~C~~~y~~~~~---~~C~~C~~~I~~~~i 160 (201)
+.|..|...+.. ... ..=|..| |..|..+.+. ..|..|..+|....+
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~F-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLC-----CFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEE-----EHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCccCCccccC-ccccCCCCChh-----hHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 567777766643 222 3346778 8888875432 589999999875543
No 131
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=21.95 E-value=48 Score=20.88 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=28.4
Q ss_pred eeeCCCCccccCCcEEEe-CCeeeeccCCchhhhhhhcC----CCCCCCCCccc
Q psy2231 108 LGCLSSVCSILSQTFYSL-SVDLYHASMHLRSDCLSMYG----GKGNTSHTMIP 156 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~-~g~~yH~~~~C~~~y~~~~~----~~C~~C~~~I~ 156 (201)
+.|..|...+.. ..... =|..| |..|..+.+. ..|..|.+++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~f-----C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSY-----CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEE-----CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCcCCChHHhC-CeEcCCCCCHH-----HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 556777665543 33444 37778 8888766553 58999999754
No 132
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=21.64 E-value=60 Score=22.45 Aligned_cols=46 Identities=7% Similarity=0.134 Sum_probs=31.8
Q ss_pred eeeCCCCccccCCcEEEeCCeeeeccCCchhhhhhhc---CCCCCCCCCcccCcc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDLYHASMHLRSDCLSMY---GGKGNTSHTMIPDTY 159 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~yH~~~~C~~~y~~~~---~~~C~~C~~~I~~~~ 159 (201)
+.|..|...+.. .....=|..| |..|..+.+ ...|..|.++|....
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~f-----C~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRF-----CKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEE-----EHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCcCChhhcC-eEECCcCChh-----hHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 567777766543 3334457778 999887654 248999999988653
No 133
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=21.24 E-value=71 Score=20.18 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=27.7
Q ss_pred eeeCCCCccccCCcEEEeCCee-eeccCCchhhhhhhcCCCCCCCCCcccCc
Q psy2231 108 LGCLSSVCSILSQTFYSLSVDL-YHASMHLRSDCLSMYGGKGNTSHTMIPDT 158 (201)
Q Consensus 108 F~C~~C~~~l~~~~f~~~~g~~-yH~~~~C~~~y~~~~~~~C~~C~~~I~~~ 158 (201)
+.|..|...+... ....=|.. + |..|.... ..|..|.++|...
T Consensus 25 ~~C~iC~~~~~~~-~~~pCgH~~~-----C~~C~~~~--~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAI-VFVPCGHLVT-----CKQCAEAV--DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCE-EEETTCCBCC-----CHHHHTTC--SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCE-EEcCCCChhH-----HHHhhhcC--ccCCCcCcCccCc
Confidence 3456665544332 22233555 6 99998776 7899999998754
No 134
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.11 E-value=41 Score=15.72 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=8.0
Q ss_pred cccCCCCCcCCC
Q psy2231 69 LRCENCNKTLVP 80 (201)
Q Consensus 69 F~C~~C~~~L~~ 80 (201)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 567777776644
No 135
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.77 E-value=93 Score=19.21 Aligned_cols=45 Identities=4% Similarity=-0.026 Sum_probs=26.7
Q ss_pred eeeCCCCccccCCc-E-EEeCCeeeeccCCchhhhhhhc--CCCCCCCCCcccC
Q psy2231 108 LGCLSSVCSILSQT-F-YSLSVDLYHASMHLRSDCLSMY--GGKGNTSHTMIPD 157 (201)
Q Consensus 108 F~C~~C~~~l~~~~-f-~~~~g~~yH~~~~C~~~y~~~~--~~~C~~C~~~I~~ 157 (201)
..|..|...+.... . ...=|..| |..|..+.+ ...|..|.++|.+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-----~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAF-----HRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEE-----EHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEe-----cHHHHHHHHHcCCcCCCcCccccc
Confidence 34566665554332 1 12346677 666765432 4689999998865
No 136
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.16 E-value=52 Score=15.17 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=7.8
Q ss_pred cccCCCCCcCCC
Q psy2231 69 LRCENCNKTLVP 80 (201)
Q Consensus 69 F~C~~C~~~L~~ 80 (201)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 567777776654
No 137
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.11 E-value=69 Score=20.33 Aligned_cols=24 Identities=33% Similarity=0.904 Sum_probs=13.3
Q ss_pred cccCCCCCcCCCC-ceeeeCC--eeee
Q psy2231 69 LRCENCNKTLVPG-SHSEHDG--KPYC 92 (201)
Q Consensus 69 F~C~~C~~~L~~~-~f~~~~g--~~yC 92 (201)
-.|+.|+++|... .-|.+.| ++||
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFC 47 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFC 47 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEES
T ss_pred cChhhccchhhcCceeeeecCchhhee
Confidence 4677778877544 3333333 3555
Done!