RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2231
(201 letters)
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 85.1 bits (211), Expect = 3e-22
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
Y AER TSLGKDWH CL+CE C KTL G H+EH+GKPYCN+PCYSA+F +
Sbjct: 11 YFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK 63
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 83.2 bits (206), Expect = 1e-21
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
Y AE+ +SLGKDWH CL+CE C+KTL PG H+EHDGKP+C+ PCY+ LF
Sbjct: 20 YFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 77.1 bits (190), Expect = 4e-19
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
Y AE G+ +H C C C K L + + HD + YC CY + +
Sbjct: 18 YHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCK-SCYGKKYGPK 69
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 75.3 bits (185), Expect = 2e-18
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKF 107
Y ER + + +H SC RC CN L G+++ G+ YC P ++ LF + +
Sbjct: 26 YPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK-PHFNQLFKSKGNY 80
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 72.7 bits (178), Expect = 3e-16
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
Y AE+ GK WH SC RC C K+L + ++ DG+ YC CY+ F +
Sbjct: 126 YAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCK-GCYAKNFGPK 177
Score = 69.3 bits (169), Expect = 5e-15
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFLGC 110
Y AE G +H SC C C K L + + H + YC CY + + K G
Sbjct: 18 YFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCK-SCYGKKYGPKGKGKGM 75
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 63.5 bits (155), Expect = 5e-14
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 52 YLAERKTS-LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
RK G+ WH C C C + L S G YC PCY F+
Sbjct: 16 MPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCV-PCYENKFASG 68
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 63.5 bits (155), Expect = 5e-14
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 52 YLAERKTS-LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
++ G WH C C NC + + GS YC C+ F+
Sbjct: 26 VAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCV-TCHETKFASG 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 62.3 bits (151), Expect = 2e-13
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 52 YLAERKTSLGKDWHGSCLRCENCNKTLVPGSHSEH--DGKPYCNYPCYSALFSERS 105
Y+ ER G +H SC RC C TL PG + +H DG YC S
Sbjct: 26 YVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 60.5 bits (147), Expect = 7e-13
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 52 YLAERK-TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
AE+ S G+ +H C C C + G E +G+ YC + LF+
Sbjct: 22 APAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE-HDFQMLFA 72
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 60.1 bits (146), Expect = 8e-13
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 52 YLAERK-TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
AE+ S G+ +H C C C + G E +G+ YC + LF+
Sbjct: 22 APAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE-HDFQMLFA 72
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 57.7 bits (140), Expect = 7e-12
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
++GK WH C C K + H E G YC Y+ LF
Sbjct: 21 NAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCET-HYNQLF 63
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 57.4 bits (139), Expect = 9e-12
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
T + WH C C C K L + D YC C+ L++
Sbjct: 21 TYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCL-NCFCDLYASG 66
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 56.2 bits (136), Expect = 2e-11
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
G WH +C C C + + S D + +C PCY +
Sbjct: 23 EYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCV-PCYEKQHASG 68
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 55.8 bits (135), Expect = 5e-11
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+++ WH C C +C + GS E DG+P+C Y
Sbjct: 31 SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCEL-HYHHRRGSG 76
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 55.1 bits (133), Expect = 1e-10
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+ WH +C RC C L + D K CN C + S +
Sbjct: 23 HYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCN-KCTTREDSPK 68
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 54.3 bits (131), Expect = 2e-10
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
T + WH CL C C L + D PYC C+ LF+
Sbjct: 31 TYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCV-ACFGELFASG 76
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 53.9 bits (130), Expect = 2e-10
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
T + WH C C C+K L + + + YC CY S
Sbjct: 21 TYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV-DCYKNFVSGP 66
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 54.0 bits (130), Expect = 2e-10
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
++ WH C RC+ C + L ++ G+ C PC++ +
Sbjct: 21 KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCR-PCHNREKA 64
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 54.0 bits (130), Expect = 3e-10
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+LGK WH C +C T+ E G YC CY F+
Sbjct: 41 VALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCEL-CYEKFFASG 86
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 52.9 bits (127), Expect = 7e-10
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+ K H C C +CN L + +G+ YC A S
Sbjct: 41 KARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCET-HARARTSGP 86
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 51.7 bits (124), Expect = 1e-09
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
L K WH SC +C+ C+ L G + DG PYC Y A F
Sbjct: 34 LDKQWHVSCFKCQTCSVILT-GEYISKDGVPYCE-SDYHAQFGSG 76
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 51.7 bits (124), Expect = 2e-09
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+ +H C RC C ++L + D + CN CY + FS
Sbjct: 35 EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCN-DCYCSAFSSG 78
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 52.0 bits (125), Expect = 3e-09
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
++WH C +C+ L + + KP C PCY +
Sbjct: 22 ENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCK-PCYVKNHAVV 65
Score = 42.0 bits (99), Expect = 1e-05
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 58 TSLGKDWHGS--CLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
T WH S C C C+K L+ +G +C+ S
Sbjct: 81 TYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCS-VECKKRMS 126
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.7 bits (119), Expect = 6e-09
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
+L + +H C C C L + + YC CY A
Sbjct: 23 VALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCE-GCYVATLE 66
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 49.8 bits (119), Expect = 8e-09
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
+ H C C +C L H + + YC S
Sbjct: 31 KLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEK-HARERVSGP 76
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 49.5 bits (118), Expect = 1e-08
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERS 105
WH C C C+ +LV + + +C C S + ++ S
Sbjct: 27 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ-KCGSGMDTDIS 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.0 bits (117), Expect = 1e-08
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
+ + WH C C+ C+ +LV C C +
Sbjct: 25 SFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP-DCGKDISG 68
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 49.7 bits (119), Expect = 2e-08
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERSKFLGC 110
+ + WH CL C+ C L G+ C Y LF + C
Sbjct: 21 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCR-RDYLRLFGQDGLCASC 72
Score = 39.3 bits (92), Expect = 1e-04
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSH-SEHDGKPYCNYPCY 97
K +H C +C C K G + C
Sbjct: 86 KDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE-QDI 123
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 48.5 bits (116), Expect = 3e-08
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGS-HSEHDGKPYCNYPCYSALFSER 104
+GK +H C C C++ L + + +C + F+
Sbjct: 33 MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCI-EDFHRKFASG 77
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 46.7 bits (111), Expect = 9e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSAL 100
G+ WH C C+ C+ L H + YC C L
Sbjct: 38 EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCP-DCAKKL 77
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 47.7 bits (113), Expect = 1e-07
Identities = 13/66 (19%), Positives = 17/66 (25%), Gaps = 8/66 (12%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERSKFLGCLSSVCSI 117
+ WH CL+C +C L S G C Y LF
Sbjct: 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLFGNS-----GAGGSGGH 77
Query: 118 LSQTFY 123
+
Sbjct: 78 MGSGGD 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 47.5 bits (113), Expect = 3e-07
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
L + WH CL+C +C+ L YC + F +
Sbjct: 25 LDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCK-DDFFKRFGTK 67
Score = 44.4 bits (105), Expect = 3e-06
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERS 105
+H C C C + L G D + C Y S
Sbjct: 85 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK-ADYETAKQGGS 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 45.2 bits (107), Expect = 4e-07
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
+H C NC K L + E G+ YC PC+ +
Sbjct: 31 IFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCL-PCHDKMG 72
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 46.3 bits (109), Expect = 4e-07
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALF 101
+ WH CL+C +C L S G C Y LF
Sbjct: 80 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLF 122
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 46.4 bits (110), Expect = 8e-07
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
L + WH CL+C +C+ L YC + F +
Sbjct: 79 LDRHWHSKCLKCSDCHVPLA-ERCFSRGESVYCK-DDFFKRFGTK 121
Score = 39.9 bits (93), Expect = 1e-04
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSA 99
+H C C C + L G D + C Y
Sbjct: 139 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK-ADYET 179
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 44.6 bits (105), Expect = 4e-06
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERSKFLGC 110
+ WH CL+C +C L S G C Y LF C
Sbjct: 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCR-NDYIRLFGNSGACSAC 75
Score = 42.7 bits (100), Expect = 2e-05
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSH-SEHDGKPYCNYPCYSALFSERSKFLGCLSS 113
G +H C C C LVPG +G +C G
Sbjct: 89 QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE-HDRPTALINGHLNSGGSGG 142
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 42.1 bits (99), Expect = 6e-06
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGSH--SEHDGKPYCNYPCYSALFSERSK 106
+ +H C C +C + G YC C++ + S S
Sbjct: 31 VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGK-CHNEVVSGPSS 80
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 42.4 bits (99), Expect = 9e-06
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSHS--EHDGKPYCNYPCYSALFSERSKFLGCLSSV 114
+ + WH CL C+ C L G+ C Y L +
Sbjct: 22 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCR-RDYLRLGGSGGHMGSGGDVM 77
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 41.3 bits (97), Expect = 1e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 58 TSLGKDWHGSCLRCENCNKTLVPGS-HSEHDGKPYCNYPCY 97
++LGK +H C C C PG + + + C C
Sbjct: 31 SALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQ-KCS 70
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 40.4 bits (94), Expect = 6e-05
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSH-SEHDGKPYCNYPCY 97
K +H C +C C K G + C
Sbjct: 28 KDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQ-DI 65
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 36.4 bits (84), Expect = 5e-04
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 61 GKDWHGS--CLRCENCNKTLVPGSHSEHDGKPYCNYPCYS 98
WH S C C C+K L+ +G +C+ C
Sbjct: 23 NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.015
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 82/213 (38%)
Query: 29 SSSGRRYVLQHHT-SNAINLPNSMYLAERKTSLGKDWHGSCLRCENCNKTL-VPGSHSEH 86
+ S R L H + + + +P + + + S L+ E NK L P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASF-----------FIASQLQ-EQFNKILPEPTEGFAA 50
Query: 87 DGKP---------YCNYPCYSALFSERSKFLGCLSSVCSILSQTF------YSLSVDL-- 129
D +P + Y S+ +F L+ + + ++L+ L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 130 ----------------YHASMHLR-------------------SDCLSMYGGKGNTSHTM 154
A + + + ++++GG+GNT
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT---- 166
Query: 155 IPDTYITQVTIVIARCLSSVYSI--QLVKPSIR 185
D Y + L +Y LV I+
Sbjct: 167 --DDYFEE--------LRDLYQTYHVLVGDLIK 189
Score = 27.3 bits (60), Expect = 4.6
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 51/149 (34%)
Query: 1 MSSSSSSSLVNSRGA-------GL--QQYAMILDLLLSSSGRRYVLQHHTSNAINLPNSM 51
+ S S V+ R A G+ + L S +L+ N +P+ M
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS------ILEDSLENNEGVPSPM 338
Query: 52 YLAER---KTSLGKDWHGSCLRCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSERSKFL 108
L+ + + N L G +L +
Sbjct: 339 -LSISNLTQEQVQD-------YVNKTNSHLPAGKQ------------VEISLVNGAKNL- 377
Query: 109 GCLSSVCSILSQTFYSLSVDLYHASMHLR 137
V S LY ++ LR
Sbjct: 378 -----VVS-------GPPQSLYGLNLTLR 394
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 32.4 bits (73), Expect = 0.016
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 60 LGKDWHGSCLRCENCNKTLVPGSH-SEHDGKPYCNYPCYSALFSERS 105
K +H SC C C + G + C A +E S
Sbjct: 23 GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHP-ACRQAARTEDS 68
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 29.0 bits (66), Expect = 1.3
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 21/48 (43%)
Query: 137 RSDCLSMYGGKGNTSHTMIPDTYITQVTIVIARCLSSVYSIQLVKPSI 184
R+DCL + G +AR ++ + + LV+P I
Sbjct: 166 RADCLGIIG---------------------VARDVAVLNQLPLVQPEI 192
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 28.2 bits (64), Expect = 1.9
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 21/48 (43%)
Query: 137 RSDCLSMYGGKGNTSHTMIPDTYITQVTIVIARCLSSVYSIQLVKPSI 184
R+D LSM G A ++++Y ++ KP
Sbjct: 168 RADALSMVG---------------------TAYEVAALYQTEMTKPET 194
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding
PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Length = 55
Score = 25.5 bits (55), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPC 96
CE C + P + +G YC+ C
Sbjct: 10 CEPCLCNVDPSKAIDRNGLYYCSEAC 35
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 27.6 bits (62), Expect = 3.2
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 13/36 (36%)
Query: 64 WHGSCLRCENCNK---TL----------VPGSHSEH 86
L C C + + G SE+
Sbjct: 90 ATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEY 125
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 27.5 bits (62), Expect = 3.4
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 137 RSDCLSMYG 145
R D L + G
Sbjct: 164 RPDALGLLG 172
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 26.4 bits (59), Expect = 6.5
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 14/37 (37%)
Query: 64 WH-GSCLRCENCNKTL-------------VPGSHSEH 86
W +C C+ C V G ++E+
Sbjct: 87 WLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEY 123
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 26.5 bits (59), Expect = 7.5
Identities = 2/13 (15%), Positives = 3/13 (23%)
Query: 64 WHGSCLRCENCNK 76
+ C C
Sbjct: 105 PAVTDGTCLACRA 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,818,609
Number of extensions: 145756
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 67
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)