RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2231
(201 letters)
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 69.0 bits (169), Expect = 5e-17
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
+CE C+KTL PG H+EHDGKP+C+ PCY+ LF
Sbjct: 1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 32
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 63.2 bits (154), Expect = 1e-14
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
+CE C KTL G H+EH+GKPYCN+PCYSA+F
Sbjct: 1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 32
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 49.7 bits (119), Expect = 1e-09
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSER 104
RC CN L G+++ G+ YC P ++ LF +
Sbjct: 1 RCSYCNNKLSLGTYASLHGRIYCK-PHFNQLFKSK 34
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 49.7 bits (119), Expect = 1e-09
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
RC C K+L + ++ DG+ YC CY+ F
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCK-GCYAKNF 31
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 46.8 bits (111), Expect = 3e-08
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
C C K L + + H + YC CY +
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCK-SCYGKKY 31
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 37.8 bits (88), Expect = 3e-05
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
C C + G E +G+ YC + + LF+
Sbjct: 3 CAQCFQQFPEGLFYEFEGRKYCEH-DFQMLFA 33
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 35.2 bits (81), Expect = 2e-04
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 50 SMYLAERKTSLGKDWHGSCL 69
++Y AE+ +SLGKDWH CL
Sbjct: 11 TVYFAEKVSSLGKDWHKFCL 30
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 28.9 bits (65), Expect = 0.040
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 71 CENCNKTLVPGSHSEHDGKPYC 92
C +C + GS E DG+P+C
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFC 23
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 28.3 bits (63), Expect = 0.073
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 50 SMYLAERKTSLGKDWHGSC 68
++Y AE+ GK WH SC
Sbjct: 24 AVYAAEKVIGAGKSWHKSC 42
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 27.8 bits (62), Expect = 0.084
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALF 101
+C+ C+ L G + DG PYC Y A F
Sbjct: 1 KCQTCSVIL-TGEYISKDGVPYCE-SDYHAQF 30
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.3 bits (58), Expect = 0.36
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
C C L + D PYC C+ LF+
Sbjct: 2 CTGCQTPLAGQQFTSRDEDPYC-VACFGELFA 32
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with
calponin homology, NICAL (MICAL1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 26.0 bits (57), Expect = 0.49
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 70 RCENCNKTLVPGSHSEH--DGKPYC 92
RC C TL PG + +H DG YC
Sbjct: 1 RCHTCEATLWPGGYEQHPGDGHFYC 25
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.6 bits (56), Expect = 0.59
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCNYPCYSALFSE 103
C C K + H E G YC Y+ LF +
Sbjct: 2 VCAKCEKPFLGHRHYERKGLAYCETH-YNQLFGD 34
>d1jjda_ g.46.1.1 (A:) Cyanobacterial metallothionein SmtA
{Synechococcus sp., PCC 7942 [TaxId: 1131]}
Length = 52
Score = 25.6 bits (56), Expect = 0.89
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPC 96
CE C + P + +G YC+ C
Sbjct: 7 CEPCLCNVDPSKAIDRNGLYYCSEAC 32
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 24.6 bits (53), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 69 LRCENCNKTLVPGSHSEHDGKPYCNYPCYS 98
RC C K+L + +E +G+ YC CY+
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCK-GCYA 29
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 24.7 bits (54), Expect = 1.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 52 YLAERKTSLGKDWHGSC 68
Y ER + + +H SC
Sbjct: 18 YPMERLLANQQVFHISC 34
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 24.1 bits (52), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 49 NSMYLAERKTSLGKDWHGSC 68
+S+Y AE+ GK WH +C
Sbjct: 9 DSVYAAEKVIGAGKPWHKNC 28
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.2 bits (50), Expect = 4.3
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPCYSALFS 102
C +C T+ E G YC CY F+
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCEL-CYEKFFA 32
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.0 bits (49), Expect = 4.9
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 71 CENCNKTLVPGSHSEHDGKPYCNYPCY 97
C C+K L + + + YC CY
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYC-VDCY 27
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 22.8 bits (49), Expect = 6.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 52 YLAERKTSLGKDWHGSC 68
Y+ ER G +H SC
Sbjct: 19 YVLERLCVNGHFFHRSC 35
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor
GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 22.4 bits (48), Expect = 8.7
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 70 RCENCNKTLVPGSHSEHDGKPYCN 93
C NC T P + G CN
Sbjct: 4 ECVNCGATATPLWRRDRTGHYLCN 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,088
Number of extensions: 29223
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 32
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)