RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2238
(311 letters)
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 394 bits (1014), Expect = e-139
Identities = 187/294 (63%), Positives = 221/294 (75%), Gaps = 2/294 (0%)
Query: 1 MPKKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQS 60
MPKKKTG RKKAEK + R+KEIR++ +A PCNA MECDKC R QK RAFCYFC S
Sbjct: 1 MPKKKTGARKKAEKQRERRKEIRNSIVV-DLARHPCNALMECDKCSRNQKTRAFCYFCNS 59
Query: 61 VQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHAC 120
VQ+LP C CGK KCM+K GDCV KHAGV+ TG+ MVGAICDFCEAW+CHGRKCL THAC
Sbjct: 60 VQKLPICAQCGKQKCMMKGGDCVTKHAGVYVTGLQMVGAICDFCEAWVCHGRKCLTTHAC 119
Query: 121 TCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNK 180
CPL+ A C+ECERGVW+HGGR+++C FC+ FLCEDDQFEHQASCQVLE+EN+KC SCN+
Sbjct: 120 KCPLRGAQCMECERGVWEHGGRIFQCSFCQDFLCEDDQFEHQASCQVLENENFKCMSCNR 179
Query: 181 LGQYSCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETSQTKDLSMSTRSHKFGRQQL 240
LGQYSCLRCK+C C DH RRKGFKY+K+K +PCPKCG+ T++TKDLSMSTRS+KFGRQ
Sbjct: 180 LGQYSCLRCKVCCCNDHVRRKGFKYDKDKNLPCPKCGYPTTETKDLSMSTRSYKFGRQTR 239
Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYD 294
DD+ S YG N + + +DYD+E+D D
Sbjct: 240 GFRSDDDQGYGRYKQNLSSNK-YGDFKGVNYGYESDDDEGSSSNDYDEEEDGDD 292
>gnl|CDD|222182 pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain.
This domain is found in a wide range of outer membrane
proteins. This domain assumes a membrane bound
beta-barrel fold.
Length = 172
Score = 36.2 bits (84), Expect = 0.008
Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 19/73 (26%)
Query: 241 NGDDYDDEDDDYDVGGGY-----SGFS-YGGGGATNSRSHKFGRQQLNGDDYDDEDDDYD 294
G D D E V GY S YGG G G L D D D D
Sbjct: 73 GGGDVDLESLYIPVNLGYRFPLGDSVSPYGGAG--------LGYTDLKIDVDGFSDSDSD 124
Query: 295 VGGGYSGFSYGGG 307
GF YG G
Sbjct: 125 -----FGFGYGAG 132
Score = 33.9 bits (78), Expect = 0.044
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 239 QLNGDDYDDEDDDYDVGGGYSGFSYG-------GGGATNSRSHKFGRQQLNGDDYDDEDD 291
D D + D D G G+ G G G + S G D D E
Sbjct: 27 GYGVSDIDGDGDGSDSGTGF-GLGGGYDFNDNVGLEGSYGYSSGDEY---GGGDVDLESL 82
Query: 292 DYDVGGGY-----SGFS-YGGGGAT 310
V GY S YGG G
Sbjct: 83 YIPVNLGYRFPLGDSVSPYGGAGLG 107
Score = 28.5 bits (64), Expect = 3.0
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 235 FGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYD 294
G L D D D D GF YG G + + D + DD D
Sbjct: 106 LGYTDLKIDVDGFSDSDSD-----FGFGYGAGVEYELNDNLSLDAEYRYTDIKSDGDDLD 160
Query: 295 VGGGYSGFSY 304
G Y
Sbjct: 161 NNTFQLGVGY 170
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown].
Length = 334
Score = 35.7 bits (82), Expect = 0.025
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 255 GGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGG 308
GG G S+ SR + G GGGYSG Y GGG
Sbjct: 50 GGRIGGGSFRAPSGY-SRGYSGGGPS---------------GGGYSGGGYSGGG 87
>gnl|CDD|225744 COG3203, OmpC, Outer membrane protein (porin) [Cell envelope
biogenesis, outer membrane].
Length = 354
Score = 32.7 bits (75), Expect = 0.20
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Query: 235 FGRQQLNGDDYDDEDDDYDVGGG---YSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDD 291
+G+ + + E + ++G G S +GR D D
Sbjct: 74 YGQLESGFQANNGESNQGGRLFTRLAFAGLKGADFG-----SLDYGRNYGVLYDVAGWTD 128
Query: 292 DYDVGGGYSGFSYGGGG 308
GG +
Sbjct: 129 PLPEFGGDATLVDDNFM 145
Score = 32.4 bits (74), Expect = 0.30
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 18/92 (19%)
Query: 234 KFGRQQLNGDDYDDEDDDYDVGGGYSGF---SYGGGGATNS---RSHKFGRQQL------ 281
+GR D D GG + ++ G A N R+ FG
Sbjct: 112 DYGRNYGVLYDVAGWTDPLPEFGGDATLVDDNFMTGRADNVATYRNPDFGGLVDGLNYAF 171
Query: 282 --NGDDYDDEDDDYDVGGGY----SGFSYGGG 307
G ++ D+ Y F G
Sbjct: 172 QYQGRPGKRKNGDFGYSATYDYGNGDFGLGAA 203
>gnl|CDD|216001 pfam00577, Usher, Type VII secretion system (T7SS), usher protein.
The chaperone-usher (CU) pathway or Type VII secretion
system (T7SS) in Gram-negative (diderm) bacteria is
responsible for the secretion and assembly of prepilins
for fimbriae biogenesis, the prototypical Type 1 pili.
Following the prepilins export to the periplasm by the
Sec translocon, the biogenesis of fimbriae requires a
two-component assembly and transport system which is
composed of a periplasmic chaperone and an outer
membrane protein, which has been termed a molecular
'usher'. The usher protein is rather large (from 86 to
100 Kd) and seems to be mainly composed of
membrane-spanning beta-sheets, a structure reminiscent
of porins. Although the degree of sequence similarity of
these proteins is not very high they share a number of
characteristics. One of these is the presence of two
pairs of cysteines, the first one located in the
N-terminal part and the second at the C-terminal
extremity that are probably involved in disulphide
bonds. The best conserved region is located in the
central part of these proteins.
Length = 552
Score = 32.2 bits (74), Expect = 0.36
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 227 SMSTRSHKFGRQQ--LNGDDYDDEDDDYDVGGGYS--GFSYGGGGATNSRSHKFGRQQLN 282
S S ++ ++G ++D+ Y V G S G G + R +L+
Sbjct: 387 SYSRSNNGGTTSNTGVSGSLFEDDRLSYGVNAGRSSDGKESSGSLNLSYRGDYG---ELS 443
Query: 283 GDDYDDEDDDYDVGGGYSGFSYGGGGA 309
G Y Y G
Sbjct: 444 G--------SYSYSRDYRQLGASLSGG 462
>gnl|CDD|225483 COG2931, COG2931, RTX toxins and related Ca2+-binding proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 510
Score = 31.9 bits (72), Expect = 0.41
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 236 GRQQLNGDDYDDE-----DDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDED 290
G L+ DD +D GG + G GA + +G+D +
Sbjct: 311 GNDTLDFSGGDDTIYGGAGNDTLDGGAGNDTLAGNAGALALLNGG------DGNDTISGN 364
Query: 291 DDYDVGGGYSGFSYGGGGATN 311
D D G +G GGA +
Sbjct: 365 DGNDTLIGGAGNDTLSGGAGS 385
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein. This family of proteins
is greatly expanded in Trichomonas vaginalis. The
proteins are composed of several glycine rich motifs
interspersed through the sequence. Although many
proteins have been annotated by similarity in the family
these annotations given the biased composition of the
sequences these are unlikely to be functionally
relevant.
Length = 248
Score = 31.4 bits (72), Expect = 0.44
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 241 NGDDYDDEDDDYDVGGGYSGFSYG--GGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGG 298
+G+ G G S G G T + + NG + GGG
Sbjct: 117 SGNYNGGSGGFGGGLVGGGGTSNGNNSTGGTQTSGGEGASSGGNGGFGYGGSGNGGGGGG 176
Query: 299 --YSGFS--YGGGG 308
+ G Y GGG
Sbjct: 177 GYFGGGGGHYAGGG 190
>gnl|CDD|238208 cd00342, gram_neg_porins, Porins form aqueous channels for the
diffusion of small hydrophillic molecules across the
outer membrane. Individual 16-strand anti-parallel
beta-barrels form a central pore, and trimerizes thru
mainly hydrophobic interactions at the interface.
Trimers are stabilized by hytrophillic clamping of Loop
L2. Loop 3 bends into the pore, creating an elliptical
constriction of about 7 x 11A, large enough to allow
passage of a glucose molecule without steric hindrance.
Removal of the C-terminal residue (usuallly F)
destabilizes the trimer and removal of the 16th
beta-sheet abolishes trimerization. Unlike typical
membrane proteins, porins lack long hydrophobic
stretches. Short turns are found at the smooth,
periplasmic end, longer irregular loops are found at
the rough, extracellular end. C-terminal residue forms
salt bridge with N-terminus.
Length = 329
Score = 31.2 bits (71), Expect = 0.71
Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 24/83 (28%)
Query: 253 DVGGGY-------SGFSYGGGGATNS-----R------SHK------FGRQQLNGDDYDD 288
D+GGG SGF+ G R S GRQ D
Sbjct: 44 DLGGGLKAIFQLESGFNLNTGALGQGGRLFGRQAYVGLSSDTYGTLTLGRQYTPLYDVLG 103
Query: 289 EDDDYDVGGGYSGFSYGGGGATN 311
D + GG S G A
Sbjct: 104 TTDPFGGSGGGSAPGDGDNLAGT 126
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/39 (28%), Positives = 12/39 (30%)
Query: 234 KFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSR 272
GRQ D D + GG S G A R
Sbjct: 90 TLGRQYTPLYDVLGTTDPFGGSGGGSAPGDGDNLAGTGR 128
>gnl|CDD|225729 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 835
Score = 31.1 bits (71), Expect = 0.79
Identities = 30/102 (29%), Positives = 33/102 (32%), Gaps = 14/102 (13%)
Query: 217 GFETSQTKDLSMSTRSHKFGRQQLNGDDYDDEDDD----YDVGGGYSGF---SYGGGGAT 269
G S T SMS+ S GR +D Y V GGY S G
Sbjct: 571 GRWLSSTASYSMSSDSD--GRTSQQVGVSGTLLEDGSLSYSVQGGYDSNDNASTSGSANL 628
Query: 270 NSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSG-FSYGGGGAT 310
N R LNG Y +DD SG GG T
Sbjct: 629 NYR---GPYGTLNG-GYSQDDDYRQANASVSGGVVAHSGGVT 666
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 31.0 bits (71), Expect = 0.95
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 168 LESENYKCKSCNKLGQYSCLRCKICFCEDHARRKGFKYE---KNKPIPCPKCGFETSQTK 224
+E KC SC K Y RC FC H + + C KCG E +
Sbjct: 622 VEIGRRKCPSCGKETFYR--RCP--FCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYS 677
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 3 KKKTGQRKKAEKMKLRQKEIRSARDKMSVAEFPCNANMECDKCKRKQKNRAFCYFCQSVQ 62
G+R E+ K + +I+ + K + Y+ Q
Sbjct: 528 GTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTEN----SSKNILKLRLYY----Q 579
Query: 63 RLPQCGHCGK---IKCMLKTGDCVIKHAGVFS 91
+ +C + GK I + I H S
Sbjct: 580 QNGKCMYTGKEIDIDDLFDLSYYEIDHILPQS 611
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 30.2 bits (68), Expect = 1.5
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 223 TKDLSMSTRSHKF---GRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQ 279
+ + + H R+ L+ DD D+ D Y+ +G + G +T+ S
Sbjct: 66 YNSILCNQKKHASFLNQRKSLDDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPD 125
Query: 280 QLNGDDYDDEDD 291
+ D +D
Sbjct: 126 RDEDADTQANND 137
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 16/49 (32%)
Query: 243 DDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDD 291
+D D +DDD D Y+ +Y F NG+D D +DD
Sbjct: 185 EDEDFDDDDDDDDDDYNAENY------------FD----NGEDDDYDDD 217
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 29.6 bits (67), Expect = 1.8
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 238 QQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYD 294
++Y D+D D G S GG +S G D DD DDD D
Sbjct: 187 DDTGINNYGDDDSDAAGGDQGSNGDDDDGGFADS-----------GYDDDDMDDDDD 232
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 30.0 bits (68), Expect = 1.8
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 36 CNANMECDKCK-----RKQKNRAFCYFCQSVQRLPQ-CGHCG 71
C EC C K + C++C + +PQ C CG
Sbjct: 441 CGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482
>gnl|CDD|193227 pfam12751, Vac7, Vacuolar segregation subunit 7. Vac7 is localised
at the vacuole membrane, a location which is consistent
with its involvement in vacuole morphology and
inheritance. Vac7 has been shown to function as an
upstream regulator of the Fab1 lipid kinase pathway. The
Fab1 lipid kinase pathway is important for correct
regulation of membrane trafficking events.
Length = 386
Score = 29.4 bits (66), Expect = 2.5
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 25/111 (22%)
Query: 203 FKYEKNKPIPCP--KCGFETSQTKDLSMSTRSHKF-GRQQLNGDDYDDEDDDYDVGGGYS 259
F YE N P P P + + + SM++++ + GR +L D
Sbjct: 90 FVYESNPPDPYPARQRRYHSRTPSATSMASQADQLAGRSRLGMRD--------------- 134
Query: 260 GFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGAT 310
G T RS KF N D D D D G G S S G G T
Sbjct: 135 ----GSHSVTGKRSMKFTNNNYNSS--LDGDGDEDGGRG-SSRSNGHGTHT 178
>gnl|CDD|214336 CHL00018, rpoC1, RNA polymerase beta' subunit.
Length = 663
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 191 ICFCEDHARRKGFKYEKNKPIPCPKCGFE 219
IC C ++ + EK P C +CG E
Sbjct: 68 ICACGNY---RVIGDEKEDPKFCEQCGVE 93
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 28.6 bits (64), Expect = 3.2
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 236 GRQQLNGDDYDDEDDDYD-----VGGGYSGFSYGGGGATNSRSHKFG--------RQQLN 282
GR G ++ Y GGGY G S GGG + G
Sbjct: 110 GRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSAPA 169
Query: 283 GDDYDDEDDD 292
G +D+ DDD
Sbjct: 170 GGGFDEMDDD 179
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.8 bits (65), Expect = 3.6
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 220 TSQTKDLSMSTRSHKFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKF--- 276
+S ++ + + ++L DD DDED+D D GG G GG R H F
Sbjct: 178 SSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGG------GEGGEERQREHPFIVT 231
Query: 277 -----GRQQLNGDDY 286
R + NG DY
Sbjct: 232 EPGEVARGKKNGLDY 246
>gnl|CDD|178633 PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.
Length = 383
Score = 28.3 bits (63), Expect = 5.8
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 197 HARRKGFKYEKNKPIPCPKCGFET--SQTKDLSMSTRSHKFGRQQLNGDDYDDEDDDYDV 254
A + + P + S K LS +S + +D D V
Sbjct: 4 QAHNPNSFHSHHFASAPPSSYLRSPHSARKSLSFICKS--------SDEDDYLIDAPVSV 55
Query: 255 GGGYSGFSYGGGGATNSRS 273
G GFS+ GG ++ S
Sbjct: 56 G---DGFSFSGGKYSDEPS 71
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 27.0 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 13/49 (26%)
Query: 244 DYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDD 292
+ DDE+DDYD ++ F+ GR++ D DD+DDD
Sbjct: 28 EDDDEEDDYDRDEIWAMFNK-------------GRKRYAYRDDDDDDDD 63
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 28.2 bits (63), Expect = 6.6
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 256 GGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVG--GGYSGFSYGGG 307
S G + S ++ D + +Y Y GF G G
Sbjct: 3 STDGSSSNGSVSSGPSNNYNSYG---PYPDSSNPYGNYQANHQDNYGGFRPGYG 53
>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
Length = 581
Score = 28.1 bits (62), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 227 SMSTRSHKFGRQQLNGDDYDDEDDDYD 253
S R+ + NGDD DD+DD D
Sbjct: 280 SFIQRNKSVDKNDSNGDDDDDDDDGED 306
>gnl|CDD|218306 pfam04878, Baculo_p48, Baculovirus P48 protein.
Length = 375
Score = 27.6 bits (62), Expect = 9.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 174 KCKSCNKLGQYSCLRCKI 191
C SC + + CL CK
Sbjct: 123 MCDSCAPVNKLECLECKC 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.466
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,083,602
Number of extensions: 1339714
Number of successful extensions: 1838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 66
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)