RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2238
(311 letters)
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Length = 342
Score = 32.9 bits (74), Expect = 0.039
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 238 QQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGG 297
+ ++ + D ++G +G G S +GR D D G
Sbjct: 58 YNVQANNTESSSDQAWTRLAFAGLKFGDAG-----SFDYGRNYGVVYDVTSWTDVLPEFG 112
Query: 298 GYSGFSYGGGGA 309
G + S +
Sbjct: 113 GDTYGSDNFLQS 124
Score = 28.7 bits (63), Expect = 1.0
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 234 KFGRQQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDY 293
+GR D D GG + S + + + D+ D
Sbjct: 90 DYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFLQSRANGVATY-----RNSDFFGLVDGL 144
Query: 294 DVGGGYSGFSYGGGGATN 311
+ Y G + G
Sbjct: 145 NFALQYQGKNGSVSGEGA 162
>d1sata1 b.80.7.1 (A:247-471) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 225
Score = 30.1 bits (67), Expect = 0.28
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGATN-SRSHKFGRQQLNGDDYDD-----EDDDYD 294
+ D+ + + FS GG N S + + G +D ++
Sbjct: 44 DTFDFSGYTANQRINLNEKSFSDVGGLKGNVSIAAGVTIENAIGGSGNDVIVGNAANNVL 103
Query: 295 VGGGYSGFSYGGGGA 309
GG + +GGGGA
Sbjct: 104 KGGAGNDVLFGGGGA 118
Score = 26.7 bits (58), Expect = 3.1
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYS 300
++ DV G G GGA F + D D+ G
Sbjct: 98 AANNVLKGGAGNDVLFGGGGADELWGGAGKDIFV-FSAASDSAPGASDWIRDFQKGIDKI 156
Query: 301 GFSYGGGGATN 311
S+ A +
Sbjct: 157 DLSFFDKEANS 167
Score = 25.5 bits (55), Expect = 8.2
Identities = 12/70 (17%), Positives = 21/70 (30%)
Query: 241 NGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGGYS 300
G D D+ + G + R + G +++ +D E +
Sbjct: 116 GGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFDKEANSSSFIHFVD 175
Query: 301 GFSYGGGGAT 310
FS G A
Sbjct: 176 HFSGTAGEAL 185
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
[TaxId: 562]}
Length = 330
Score = 29.1 bits (64), Expect = 0.69
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 238 QQLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGG 297
+ G+ + + ++G Y G+ +GR D + D + G
Sbjct: 58 AEFAGNKAESDTAQQKTRLAFAGLKYKDLGSF-----DYGRNLGALYDVEAWTDMFPEFG 112
Query: 298 GYSGFSYGGGGATN 311
G S
Sbjct: 113 GDSSAQTDNFMTKR 126
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different
sequences [TaxId: 562]}
Length = 340
Score = 27.9 bits (61), Expect = 1.7
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 239 QLNGDDYDDEDDDYDVGGGYSGFSYGGGGATNSRSHKFGRQQLNGDDYDDEDDDYDVGGG 298
Q N + D ++G Y G+ +GR D D GG
Sbjct: 66 QGNNSEGADAQTGNKTRLAFAGLKYADVGSF-----DYGRNYGVVYDALGYTDMLPEFGG 120
Query: 299 YSGFSYGGGGATN 311
+ +S
Sbjct: 121 DTAYSDDFFVGRV 133
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse
(Mus musculus), class II [TaxId: 10090]}
Length = 202
Score = 26.8 bits (58), Expect = 3.0
Identities = 12/109 (11%), Positives = 21/109 (19%), Gaps = 6/109 (5%)
Query: 53 AFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGR 112
C + + + G GV + G + C
Sbjct: 44 CVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLC 103
Query: 113 K------CLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFLCE 155
C + P D +E + GR +
Sbjct: 104 LSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQ 152
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 1/157 (0%)
Query: 66 QCGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCL-QTHACTCPL 124
+ + + G+ + + H +
Sbjct: 119 GVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHV 178
Query: 125 QDAVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENYKCKSCNKLGQY 184
+ LE + G ++ L + + + + + K + L +
Sbjct: 179 STKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEG 238
Query: 185 SCLRCKICFCEDHARRKGFKYEKNKPIPCPKCGFETS 221
CF DHA + F+ E + G +T+
Sbjct: 239 VKRGIIDCFATDHAPHQTFEKELVEFAMPGIIGLQTA 275
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 26.6 bits (57), Expect = 3.7
Identities = 14/141 (9%), Positives = 29/141 (20%), Gaps = 12/141 (8%)
Query: 34 FPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQCGHCGKIKCMLKTGDCVIKHAGVFSTG 93
K + A QRLP+ K ++ + +
Sbjct: 121 CDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGL 180
Query: 94 MGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFL 153
+ V +A + P+ V + L
Sbjct: 181 ISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVD------------L 228
Query: 154 CEDDQFEHQASCQVLESENYK 174
E Q + +++
Sbjct: 229 VTGLAIEEACYAQTIPTKDRL 249
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 26.4 bits (57), Expect = 3.9
Identities = 13/129 (10%), Positives = 26/129 (20%), Gaps = 1/129 (0%)
Query: 35 PCNANMECDKCKRKQKNRAFCYFCQSVQRLPQC-GHCGKIKCMLKTGDCVIKHAGVFSTG 93
+ K + + + H C + + VF+
Sbjct: 75 VYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGD 134
Query: 94 MGMVGAICDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWDHGGRVYKCCFCEGFL 153
V F E K L P V E + + +
Sbjct: 135 TLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIR 194
Query: 154 CEDDQFEHQ 162
+ + +
Sbjct: 195 EKLAWAKEK 203
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 74
Score = 25.0 bits (54), Expect = 4.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 36 CNANMECDKCKRKQKNRAFCYFCQSVQRLPQ-CGHCG 71
C+ E + R + C C+ +Q Q C C
Sbjct: 35 CHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 71
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
coli [TaxId: 562]}
Length = 242
Score = 26.1 bits (57), Expect = 4.7
Identities = 12/123 (9%), Positives = 27/123 (21%), Gaps = 14/123 (11%)
Query: 33 EFPCNANMECDKCKRKQKNRAFCYFCQSVQRLPQC------GHCGKIK-CMLKTGDCVIK 85
E + K C + Q + G K++ + D I+
Sbjct: 69 NLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQ 128
Query: 86 HAGVFSTGMGMVGAI-------CDFCEAWICHGRKCLQTHACTCPLQDAVCLECERGVWD 138
+ + A + + + + A G+
Sbjct: 129 VSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKV 188
Query: 139 HGG 141
+ G
Sbjct: 189 NAG 191
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 246
Score = 25.8 bits (56), Expect = 6.6
Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 11/107 (10%)
Query: 67 CGHCGKIKCMLKTGDCVIKHAGVFSTGMGMVGAICDFCEAWICHGRKCLQTHACTCPLQD 126
G CG +K GD ++ A AI + + + +
Sbjct: 90 LGKCGGLKLENALGDYLLPIA-----------AIRGEGTSNDYLPEEVPSLPSFSVLRAI 138
Query: 127 AVCLECERGVWDHGGRVYKCCFCEGFLCEDDQFEHQASCQVLESENY 173
+ ++ + + G + + + ++ E
Sbjct: 139 SSAIQNKGKDYWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETA 185
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 6.9
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 203 FKYEKNKPIPCPKCGFETSQTK 224
+K ++ + C +CG E +++
Sbjct: 62 YKRQRFEGKVCERCGVEVTKSI 83
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 23.6 bits (51), Expect = 7.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 60 SVQRLPQCGHCG 71
S QR+P C CG
Sbjct: 14 SAQRMPLCDKCG 25
>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId:
1280]}
Length = 301
Score = 25.7 bits (56), Expect = 7.7
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 248 EDDDYDVGGGYSGFSYGGGGATNSRS-HKFGRQQLNGDDYDDEDDDYDV 295
+D+D+ +G G + + +FG+ D E D+ V
Sbjct: 179 DDEDFLMGEDVYTPGKEGDALRSMSNPEQFGQPSHMKDYVYTEKDNGGV 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.466
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,930
Number of extensions: 68223
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 123
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)