Query psy224
Match_columns 547
No_of_seqs 263 out of 2908
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:44:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15027 xylulokinase; Provisi 100.0 5.1E-55 1.1E-59 467.3 22.5 321 5-347 1-419 (484)
2 TIGR01314 gntK_FGGY gluconate 100.0 8.9E-55 1.9E-59 467.9 22.6 331 5-352 1-439 (505)
3 PRK10331 L-fuculokinase; Provi 100.0 1.2E-54 2.6E-59 462.9 22.4 327 4-352 2-427 (470)
4 PRK00047 glpK glycerol kinase; 100.0 1.8E-54 3.8E-59 464.8 22.4 332 1-352 1-441 (498)
5 COG0554 GlpK Glycerol kinase [ 100.0 3.3E-54 7.1E-59 430.3 19.0 333 3-356 4-444 (499)
6 COG1070 XylB Sugar (pentulose 100.0 3.3E-53 7.2E-58 453.5 24.3 333 1-352 1-439 (502)
7 PTZ00294 glycerol kinase-like 100.0 1.9E-53 4.2E-58 457.1 21.6 331 3-352 1-444 (504)
8 PLN02295 glycerol kinase 100.0 2.1E-53 4.6E-58 457.3 21.8 330 5-355 1-453 (512)
9 TIGR02628 fuculo_kin_coli L-fu 100.0 2E-52 4.4E-57 444.8 22.6 328 5-352 2-431 (465)
10 TIGR01311 glycerol_kin glycero 100.0 4E-52 8.7E-57 446.0 22.1 330 4-354 1-439 (493)
11 PRK10939 autoinducer-2 (AI-2) 100.0 4.3E-52 9.4E-57 448.3 22.2 334 3-352 2-447 (520)
12 PRK04123 ribulokinase; Provisi 100.0 5.3E-52 1.1E-56 450.7 21.8 344 3-353 2-478 (548)
13 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.6E-52 5.6E-57 451.0 17.4 334 5-352 1-481 (541)
14 TIGR01312 XylB D-xylulose kina 100.0 4.9E-51 1.1E-55 438.1 23.0 326 7-353 1-429 (481)
15 TIGR01234 L-ribulokinase L-rib 100.0 4E-51 8.7E-56 442.0 21.3 339 5-352 2-474 (536)
16 PLN02669 xylulokinase 100.0 2.6E-50 5.6E-55 434.1 21.3 334 3-352 7-483 (556)
17 TIGR02627 rhamnulo_kin rhamnul 100.0 8.1E-46 1.7E-50 393.3 14.6 310 7-346 1-419 (454)
18 COG1069 AraB Ribulose kinase [ 100.0 1.7E-43 3.6E-48 358.7 22.7 338 3-352 2-469 (544)
19 KOG2517|consensus 100.0 7.9E-42 1.7E-46 350.0 21.5 335 3-356 5-456 (516)
20 PRK10640 rhaB rhamnulokinase; 100.0 6.7E-40 1.4E-44 348.3 14.6 282 46-347 26-408 (471)
21 COG0450 AhpC Peroxiredoxin [Po 100.0 4.5E-36 9.9E-41 267.9 18.7 189 355-544 3-192 (194)
22 PRK10382 alkyl hydroperoxide r 100.0 2.3E-34 4.9E-39 266.1 19.1 181 355-538 2-183 (187)
23 PRK15000 peroxidase; Provision 100.0 2E-34 4.4E-39 270.3 18.5 190 356-546 3-196 (200)
24 KOG0852|consensus 100.0 2.6E-34 5.7E-39 248.2 16.3 191 357-547 6-196 (196)
25 PTZ00137 2-Cys peroxiredoxin; 100.0 5.9E-34 1.3E-38 274.1 19.1 189 355-544 68-257 (261)
26 PRK13190 putative peroxiredoxi 100.0 1.4E-32 3E-37 259.0 19.1 183 356-543 3-188 (202)
27 PRK13191 putative peroxiredoxi 100.0 1.9E-32 4E-37 259.5 19.4 177 355-536 7-189 (215)
28 PTZ00253 tryparedoxin peroxida 100.0 1.6E-32 3.5E-37 258.6 18.7 190 356-545 7-197 (199)
29 cd03016 PRX_1cys Peroxiredoxin 100.0 3.2E-32 6.9E-37 257.1 18.8 183 357-544 1-189 (203)
30 TIGR03137 AhpC peroxiredoxin. 100.0 6.9E-32 1.5E-36 251.6 18.9 178 356-536 3-181 (187)
31 PRK13599 putative peroxiredoxi 100.0 8.3E-32 1.8E-36 254.9 18.8 185 356-544 3-195 (215)
32 PRK13189 peroxiredoxin; Provis 100.0 1.5E-31 3.4E-36 254.8 19.1 185 355-544 9-202 (222)
33 KOG2531|consensus 100.0 1.9E-31 4.2E-36 262.7 19.7 336 4-351 9-479 (545)
34 cd03015 PRX_Typ2cys Peroxiredo 100.0 5.1E-30 1.1E-34 236.7 19.4 171 357-528 1-173 (173)
35 PF00370 FGGY_N: FGGY family o 100.0 3.4E-31 7.4E-36 258.9 7.9 164 5-178 1-245 (245)
36 COG1225 Bcp Peroxiredoxin [Pos 100.0 3E-28 6.6E-33 213.9 16.3 146 356-512 5-156 (157)
37 KOG0854|consensus 99.9 1.5E-26 3.2E-31 199.7 13.4 184 357-544 8-203 (224)
38 cd03018 PRX_AhpE_like Peroxire 99.9 1.8E-23 3.8E-28 188.3 15.7 143 357-509 3-148 (149)
39 PRK00522 tpx lipid hydroperoxi 99.9 4.7E-23 1E-27 188.7 16.9 142 356-509 19-166 (167)
40 cd03017 PRX_BCP Peroxiredoxin 99.9 7.3E-23 1.6E-27 182.3 13.9 137 359-506 1-140 (140)
41 cd03014 PRX_Atyp2cys Peroxired 99.9 1.5E-22 3.1E-27 181.1 15.8 138 357-506 2-142 (143)
42 PRK09437 bcp thioredoxin-depen 99.9 1.2E-22 2.6E-27 184.0 15.2 144 356-510 5-154 (154)
43 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 7E-23 1.5E-27 178.3 12.3 124 357-490 1-124 (124)
44 cd03013 PRX5_like Peroxiredoxi 99.9 8.8E-22 1.9E-26 177.6 14.4 131 357-496 1-142 (155)
45 PF08534 Redoxin: Redoxin; In 99.9 6.2E-22 1.3E-26 177.7 12.6 130 357-496 2-136 (146)
46 cd02971 PRX_family Peroxiredox 99.9 5.4E-21 1.2E-25 170.2 15.7 134 360-502 1-137 (140)
47 cd02969 PRX_like1 Peroxiredoxi 99.9 7.2E-21 1.6E-25 175.4 15.5 151 358-525 1-171 (171)
48 PF02782 FGGY_C: FGGY family o 99.8 1.2E-20 2.6E-25 178.3 13.9 160 186-354 1-189 (198)
49 cd02970 PRX_like2 Peroxiredoxi 99.8 2.2E-20 4.7E-25 168.0 12.5 124 360-493 1-148 (149)
50 PLN02399 phospholipid hydroper 99.8 3.5E-20 7.6E-25 176.5 14.3 141 356-511 74-233 (236)
51 cd03012 TlpA_like_DipZ_like Tl 99.8 1.9E-20 4E-25 163.6 11.2 111 369-494 9-125 (126)
52 PLN02412 probable glutathione 99.8 2.3E-20 4.9E-25 170.8 11.7 138 359-511 7-163 (167)
53 PTZ00056 glutathione peroxidas 99.8 4.5E-20 9.8E-25 173.3 13.9 129 357-496 15-166 (199)
54 TIGR02540 gpx7 putative glutat 99.8 2.4E-20 5.1E-25 168.6 11.0 133 362-510 3-151 (153)
55 cd00340 GSH_Peroxidase Glutath 99.8 1.6E-20 3.4E-25 169.6 8.7 124 361-496 2-144 (152)
56 PRK15412 thiol:disulfide inter 99.8 8.4E-20 1.8E-24 170.2 11.5 124 356-498 40-166 (185)
57 PTZ00256 glutathione peroxidas 99.8 1.3E-19 2.8E-24 168.5 11.6 131 357-498 16-171 (183)
58 PRK03147 thiol-disulfide oxido 99.8 4.9E-19 1.1E-23 163.5 13.5 134 357-511 37-171 (173)
59 KOG0855|consensus 99.8 9E-19 1.9E-23 150.4 12.7 145 356-510 64-210 (211)
60 TIGR02661 MauD methylamine deh 99.8 1.1E-18 2.3E-23 163.1 13.2 130 357-509 48-179 (189)
61 cd03010 TlpA_like_DsbE TlpA-li 99.8 8.2E-19 1.8E-23 153.4 11.3 119 360-496 2-122 (127)
62 TIGR00385 dsbE periplasmic pro 99.8 1.7E-18 3.8E-23 159.6 12.6 132 356-510 35-169 (173)
63 cd03008 TryX_like_RdCVF Trypar 99.8 4.2E-18 9.1E-23 150.2 10.4 102 376-491 17-129 (146)
64 cd02968 SCO SCO (an acronym fo 99.7 1.1E-17 2.4E-22 149.2 12.2 121 360-491 1-140 (142)
65 cd02967 mauD Methylamine utili 99.7 1.6E-17 3.4E-22 142.4 12.5 110 362-491 1-112 (114)
66 TIGR01626 ytfJ_HI0045 conserve 99.7 1.7E-17 3.6E-22 151.6 11.3 140 357-511 25-182 (184)
67 PRK14018 trifunctional thiored 99.7 1.2E-16 2.6E-21 167.9 16.9 130 357-509 34-170 (521)
68 PRK10606 btuE putative glutath 99.7 6.9E-17 1.5E-21 148.6 12.6 138 359-510 3-179 (183)
69 cd02966 TlpA_like_family TlpA- 99.7 1.9E-16 4.2E-21 134.8 11.6 113 363-492 1-115 (116)
70 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 2.2E-16 4.8E-21 137.1 10.2 112 362-496 1-114 (123)
71 cd03009 TryX_like_TryX_NRX Try 99.7 2.7E-16 6E-21 138.2 8.9 110 367-491 4-116 (131)
72 cd02964 TryX_like_family Trypa 99.7 7.6E-16 1.6E-20 135.5 11.1 106 370-491 4-116 (132)
73 PLN02919 haloacid dehalogenase 99.6 1.2E-15 2.6E-20 175.8 12.8 134 357-507 393-534 (1057)
74 PRK13728 conjugal transfer pro 99.6 3.1E-15 6.6E-20 135.8 10.8 107 357-496 51-159 (181)
75 PF13905 Thioredoxin_8: Thiore 99.5 3.7E-14 8.1E-19 117.1 7.8 90 384-487 1-95 (95)
76 COG2077 Tpx Peroxiredoxin [Pos 99.4 1.7E-12 3.7E-17 111.0 12.1 125 356-492 19-148 (158)
77 COG0386 BtuE Glutathione perox 99.4 2.1E-12 4.7E-17 110.9 12.3 121 361-492 5-144 (162)
78 TIGR02738 TrbB type-F conjugat 99.4 2.9E-12 6.2E-17 114.6 10.6 92 375-496 45-141 (153)
79 PF02630 SCO1-SenC: SCO1/SenC; 99.3 3.5E-12 7.7E-17 117.3 9.0 125 357-492 28-172 (174)
80 COG1999 Uncharacterized protei 99.3 2.1E-11 4.4E-16 115.0 12.9 139 363-512 49-204 (207)
81 KOG2792|consensus 99.2 2.2E-11 4.8E-16 113.3 8.6 138 363-508 121-271 (280)
82 cd02950 TxlA TRX-like protein 99.2 7.4E-11 1.6E-15 104.8 10.0 99 376-512 10-110 (142)
83 KOG1651|consensus 99.2 5.9E-11 1.3E-15 103.4 9.0 124 359-492 12-153 (171)
84 COG0678 AHP1 Peroxiredoxin [Po 99.2 1.7E-10 3.7E-15 98.5 11.0 133 356-495 4-149 (165)
85 cd02985 TRX_CDSP32 TRX family, 99.1 8.6E-10 1.9E-14 92.4 10.8 81 380-495 11-91 (103)
86 TIGR02740 TraF-like TraF-like 99.1 4.3E-10 9.4E-15 110.5 9.5 106 375-511 157-263 (271)
87 cd02951 SoxW SoxW family; SoxW 99.0 2.6E-09 5.7E-14 92.8 10.4 103 383-512 12-119 (125)
88 KOG2501|consensus 99.0 2.5E-09 5.5E-14 93.6 9.5 111 364-491 15-132 (157)
89 KOG0541|consensus 99.0 2.8E-09 6.1E-14 91.6 9.2 137 354-497 8-157 (171)
90 cd02963 TRX_DnaJ TRX domain, D 99.0 6.9E-09 1.5E-13 88.1 11.2 90 381-510 21-110 (111)
91 cd02999 PDI_a_ERp44_like PDIa 99.0 3.9E-09 8.4E-14 87.8 9.3 85 380-506 14-98 (100)
92 cd02948 TRX_NDPK TRX domain, T 98.9 1.2E-08 2.5E-13 85.3 10.6 87 383-511 16-102 (102)
93 cd02956 ybbN ybbN protein fami 98.9 2.2E-08 4.7E-13 82.6 10.3 85 383-508 11-95 (96)
94 cd02954 DIM1 Dim1 family; Dim1 98.8 4.8E-08 1E-12 82.2 11.1 92 383-511 13-110 (114)
95 cd02953 DsbDgamma DsbD gamma f 98.8 2.4E-08 5.2E-13 83.7 8.8 90 383-508 10-103 (104)
96 PF00255 GSHPx: Glutathione pe 98.7 5.3E-08 1.1E-12 81.1 8.7 82 363-455 3-92 (108)
97 PF13098 Thioredoxin_2: Thiore 98.7 3.5E-08 7.5E-13 83.9 7.3 106 383-508 4-112 (112)
98 TIGR00241 CoA_E_activ CoA-subs 98.7 2.7E-07 5.8E-12 90.2 14.5 74 273-353 168-242 (248)
99 PRK09381 trxA thioredoxin; Pro 98.7 1.5E-07 3.2E-12 79.6 10.9 86 383-509 20-105 (109)
100 KOG0910|consensus 98.7 1.4E-07 3.1E-12 81.9 10.1 77 383-496 60-136 (150)
101 PHA02278 thioredoxin-like prot 98.7 1.9E-07 4.1E-12 77.8 10.3 80 383-495 13-92 (103)
102 cd02994 PDI_a_TMX PDIa family, 98.6 3.1E-07 6.8E-12 76.4 10.5 85 383-509 16-100 (101)
103 cd03000 PDI_a_TMX3 PDIa family 98.6 3.4E-07 7.3E-12 76.7 9.5 88 383-511 14-103 (104)
104 PRK10996 thioredoxin 2; Provis 98.6 6.2E-07 1.3E-11 79.4 11.3 87 383-510 51-137 (139)
105 cd02962 TMX2 TMX2 family; comp 98.6 4.4E-07 9.5E-12 81.1 10.2 81 383-493 46-126 (152)
106 cd02993 PDI_a_APS_reductase PD 98.6 3.5E-07 7.7E-12 77.3 9.2 87 383-506 20-107 (109)
107 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 4.9E-07 1.1E-11 75.7 9.6 77 383-495 18-94 (104)
108 PLN00410 U5 snRNP protein, DIM 98.5 1E-06 2.2E-11 77.2 11.7 101 383-520 22-128 (142)
109 cd02949 TRX_NTR TRX domain, no 98.5 8.3E-07 1.8E-11 73.3 10.6 76 383-495 12-87 (97)
110 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 3.5E-07 7.6E-12 76.2 8.2 75 383-494 17-91 (101)
111 cd03002 PDI_a_MPD1_like PDI fa 98.5 4.6E-07 9.9E-12 76.5 8.6 87 383-507 17-107 (109)
112 KOG0907|consensus 98.5 9.6E-07 2.1E-11 73.7 10.3 76 383-496 20-95 (106)
113 cd02986 DLP Dim1 family, Dim1- 98.5 1.6E-06 3.5E-11 72.5 11.0 92 383-511 13-110 (114)
114 cd03005 PDI_a_ERp46 PDIa famil 98.5 8.1E-07 1.8E-11 73.9 9.3 75 386-496 18-94 (102)
115 cd02997 PDI_a_PDIR PDIa family 98.5 1.3E-06 2.8E-11 73.0 9.8 79 383-495 16-95 (104)
116 cd02959 ERp19 Endoplasmic reti 98.4 5.6E-07 1.2E-11 77.0 7.5 83 378-493 13-95 (117)
117 TIGR01126 pdi_dom protein disu 98.4 1.4E-06 3.1E-11 72.3 9.7 88 383-510 12-100 (102)
118 PF05988 DUF899: Bacterial pro 98.4 2.7E-06 5.8E-11 78.3 11.7 184 327-525 9-204 (211)
119 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.3E-06 2.9E-11 74.0 9.0 76 383-495 28-104 (113)
120 cd02984 TRX_PICOT TRX domain, 98.4 2.1E-06 4.5E-11 70.7 10.0 74 384-494 14-87 (97)
121 PF00085 Thioredoxin: Thioredo 98.4 2.7E-06 5.9E-11 70.7 10.8 87 383-510 16-102 (103)
122 cd02996 PDI_a_ERp44 PDIa famil 98.4 1.7E-06 3.7E-11 73.0 9.5 88 383-506 17-106 (108)
123 PTZ00051 thioredoxin; Provisio 98.4 2E-06 4.3E-11 71.1 8.8 74 383-494 17-90 (98)
124 cd02992 PDI_a_QSOX PDIa family 98.4 2.6E-06 5.6E-11 72.6 9.4 69 384-485 19-89 (114)
125 PF00837 T4_deiodinase: Iodoth 98.3 2.5E-06 5.4E-11 80.2 9.8 143 356-511 74-236 (237)
126 TIGR01068 thioredoxin thioredo 98.3 5.6E-06 1.2E-10 68.4 10.5 85 384-509 14-98 (101)
127 cd03065 PDI_b_Calsequestrin_N 98.3 5.7E-06 1.2E-10 70.7 10.5 87 384-511 27-118 (120)
128 TIGR01295 PedC_BrcD bacterioci 98.3 3.4E-06 7.4E-11 72.7 9.2 90 383-496 22-111 (122)
129 cd02965 HyaE HyaE family; HyaE 98.3 4.2E-06 9.1E-11 70.0 9.1 77 383-496 26-104 (111)
130 COG3118 Thioredoxin domain-con 98.3 3.2E-06 7E-11 81.5 9.2 77 383-496 42-118 (304)
131 cd02955 SSP411 TRX domain, SSP 98.3 1.5E-05 3.2E-10 68.7 12.4 101 383-511 14-121 (124)
132 cd02952 TRP14_like Human TRX-r 98.3 2.1E-06 4.5E-11 73.2 7.0 79 382-488 19-104 (119)
133 cd02961 PDI_a_family Protein D 98.3 4E-06 8.8E-11 69.0 8.0 85 383-506 14-99 (101)
134 cd02957 Phd_like Phosducin (Ph 98.2 7.4E-06 1.6E-10 69.7 9.8 73 384-495 24-96 (113)
135 PTZ00443 Thioredoxin domain-co 98.2 3.5E-06 7.7E-11 80.2 8.6 86 384-510 52-137 (224)
136 cd02998 PDI_a_ERp38 PDIa famil 98.2 4.9E-06 1.1E-10 69.4 8.1 77 384-494 18-95 (105)
137 cd02975 PfPDO_like_N Pyrococcu 98.2 9.6E-06 2.1E-10 69.0 9.7 87 384-508 22-109 (113)
138 cd02989 Phd_like_TxnDC9 Phosdu 98.2 1.8E-05 3.9E-10 67.3 11.3 77 383-497 21-97 (113)
139 PRK00293 dipZ thiol:disulfide 98.2 6E-06 1.3E-10 90.1 9.6 95 381-512 471-570 (571)
140 cd03001 PDI_a_P5 PDIa family, 98.1 2.1E-05 4.6E-10 65.4 9.9 83 384-506 18-100 (103)
141 TIGR00424 APS_reduc 5'-adenyly 98.1 1.7E-05 3.7E-10 83.2 10.8 93 383-511 370-462 (463)
142 PRK13317 pantothenate kinase; 98.1 0.00018 4E-09 71.0 17.4 69 284-353 194-265 (277)
143 PF13728 TraF: F plasmid trans 98.1 8.5E-06 1.8E-10 77.4 7.6 100 376-506 112-212 (215)
144 cd02947 TRX_family TRX family; 98.0 5.8E-05 1.2E-09 60.7 10.5 74 384-495 10-83 (93)
145 TIGR02739 TraF type-F conjugat 98.0 1.9E-05 4.1E-10 76.3 8.0 105 376-507 142-247 (256)
146 TIGR02259 benz_CoA_red_A benzo 98.0 4.4E-05 9.6E-10 77.0 10.7 71 278-353 350-425 (432)
147 cd02987 Phd_like_Phd Phosducin 98.0 6.1E-05 1.3E-09 69.3 10.4 73 384-495 83-155 (175)
148 PRK13703 conjugal pilus assemb 98.0 2.4E-05 5.2E-10 75.2 7.8 102 377-509 136-238 (248)
149 PLN02309 5'-adenylylsulfate re 97.9 5.1E-05 1.1E-09 79.6 10.8 92 383-511 364-456 (457)
150 TIGR00411 redox_disulf_1 small 97.9 0.00013 2.8E-09 57.9 10.8 79 387-510 2-80 (82)
151 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 5.6E-05 1.2E-09 62.8 8.6 43 384-427 18-61 (104)
152 PF13911 AhpC-TSA_2: AhpC/TSA 97.8 8.2E-05 1.8E-09 63.5 8.6 79 407-492 2-112 (115)
153 PTZ00102 disulphide isomerase; 97.8 8.7E-05 1.9E-09 79.9 9.9 91 383-512 374-465 (477)
154 COG1924 Activator of 2-hydroxy 97.8 0.00074 1.6E-08 67.5 14.8 70 278-353 311-381 (396)
155 PTZ00062 glutaredoxin; Provisi 97.7 0.00021 4.6E-09 67.0 9.5 65 385-495 18-82 (204)
156 cd02960 AGR Anterior Gradient 97.7 0.00014 3.1E-09 62.7 7.3 93 382-510 21-121 (130)
157 PF10417 1-cysPrx_C: C-termina 97.7 2.6E-05 5.7E-10 52.4 2.1 25 510-534 1-25 (40)
158 PF09695 YtfJ_HI0045: Bacteria 97.7 0.00025 5.4E-09 62.3 8.6 141 357-509 3-158 (160)
159 TIGR01130 ER_PDI_fam protein d 97.6 0.00028 6E-09 75.5 10.8 89 383-511 17-108 (462)
160 cd02988 Phd_like_VIAF Phosduci 97.6 0.00032 6.9E-09 65.4 9.7 85 383-508 101-188 (192)
161 TIGR00412 redox_disulf_2 small 97.6 0.00045 9.7E-09 54.1 9.0 27 388-415 2-28 (76)
162 cd02958 UAS UAS family; UAS is 97.6 0.0004 8.7E-09 59.1 9.1 94 380-511 13-110 (114)
163 PF04592 SelP_N: Selenoprotein 97.6 0.00047 1E-08 64.5 10.0 124 376-512 18-146 (238)
164 TIGR02187 GlrX_arch Glutaredox 97.6 0.0009 1.9E-08 63.9 11.9 79 381-495 16-98 (215)
165 PTZ00102 disulphide isomerase; 97.5 0.00038 8.3E-09 74.9 10.3 89 383-512 48-138 (477)
166 TIGR03286 methan_mark_15 putat 97.5 0.0031 6.7E-08 64.6 15.0 65 284-353 329-394 (404)
167 COG4312 Uncharacterized protei 97.5 0.00044 9.5E-09 63.5 7.6 154 327-491 15-197 (247)
168 TIGR03192 benz_CoA_bzdQ benzoy 97.4 0.0029 6.4E-08 62.3 13.6 68 279-353 210-279 (293)
169 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.0012 2.6E-08 53.4 8.2 72 379-490 7-78 (89)
170 cd02973 TRX_GRX_like Thioredox 97.3 0.0015 3.2E-08 49.6 8.3 64 387-490 2-65 (67)
171 cd01659 TRX_superfamily Thiore 97.3 0.0013 2.7E-08 48.3 7.3 42 388-432 1-42 (69)
172 PHA02125 thioredoxin-like prot 97.2 0.0034 7.4E-08 48.9 9.6 72 388-508 2-73 (75)
173 PF14595 Thioredoxin_9: Thiore 97.2 0.00049 1.1E-08 59.8 4.4 83 379-496 36-118 (129)
174 cd02982 PDI_b'_family Protein 97.1 0.0026 5.7E-08 52.6 8.2 68 383-484 11-78 (103)
175 TIGR00555 panK_eukar pantothen 97.1 0.051 1.1E-06 53.5 18.0 69 283-353 201-273 (279)
176 KOG0908|consensus 97.0 0.0024 5.3E-08 60.0 8.0 76 380-493 17-92 (288)
177 TIGR01130 ER_PDI_fam protein d 96.9 0.0037 7.9E-08 66.9 8.9 89 383-512 363-454 (462)
178 smart00594 UAS UAS domain. 96.9 0.0063 1.4E-07 52.4 8.7 88 383-508 26-121 (122)
179 TIGR02187 GlrX_arch Glutaredox 96.8 0.015 3.3E-07 55.4 11.4 84 381-509 130-213 (215)
180 PRK09472 ftsA cell division pr 96.7 0.16 3.5E-06 53.6 19.4 62 284-346 292-360 (420)
181 COG0526 TrxA Thiol-disulfide i 96.7 0.0039 8.5E-08 51.9 5.8 48 378-427 26-73 (127)
182 PF05176 ATP-synt_10: ATP10 pr 96.6 0.013 2.9E-07 56.8 10.0 139 359-508 99-249 (252)
183 KOG4498|consensus 96.5 0.018 3.9E-07 52.0 8.8 131 370-509 37-195 (197)
184 PF13899 Thioredoxin_7: Thiore 96.4 0.01 2.2E-07 47.1 6.5 46 383-430 16-64 (82)
185 cd03007 PDI_a_ERp29_N PDIa fam 96.2 0.045 9.8E-07 46.4 9.6 94 383-510 17-114 (116)
186 KOG0190|consensus 96.2 0.012 2.7E-07 61.8 7.4 91 384-512 42-132 (493)
187 cd02991 UAS_ETEA UAS family, E 95.6 0.11 2.4E-06 44.2 9.4 88 383-511 16-112 (116)
188 smart00732 YqgFc Likely ribonu 95.4 0.028 6.1E-07 46.1 5.1 29 5-34 2-30 (99)
189 PF03190 Thioredox_DsbH: Prote 95.3 0.087 1.9E-06 47.3 8.0 104 377-512 30-144 (163)
190 PF13778 DUF4174: Domain of un 94.9 0.091 2E-06 44.8 6.9 111 378-513 2-113 (118)
191 COG2971 Predicted N-acetylgluc 94.8 0.061 1.3E-06 52.8 6.1 52 288-342 224-277 (301)
192 COG4232 Thiol:disulfide interc 94.6 0.07 1.5E-06 56.9 6.4 94 382-510 472-566 (569)
193 TIGR02196 GlrX_YruB Glutaredox 94.5 0.37 8.1E-06 36.4 8.8 33 388-428 2-34 (74)
194 COG2143 Thioredoxin-related pr 94.4 0.37 7.9E-06 42.4 9.3 97 380-496 38-137 (182)
195 KOG0191|consensus 94.4 0.095 2.1E-06 54.7 6.8 66 383-484 46-111 (383)
196 PRK11657 dsbG disulfide isomer 93.8 0.24 5.2E-06 48.3 8.0 99 383-491 116-236 (251)
197 KOG1731|consensus 93.7 0.04 8.8E-07 58.1 2.6 94 385-514 58-159 (606)
198 PF14574 DUF4445: Domain of un 93.7 0.084 1.8E-06 55.0 4.8 34 4-38 1-35 (412)
199 COG1940 NagC Transcriptional r 93.7 0.14 2.9E-06 51.9 6.3 35 2-37 4-38 (314)
200 PRK11509 hydrogenase-1 operon 93.3 0.65 1.4E-05 40.3 8.9 48 454-512 77-124 (132)
201 PF13192 Thioredoxin_3: Thiore 93.3 0.77 1.7E-05 35.6 8.7 70 394-509 7-76 (76)
202 KOG0912|consensus 93.2 0.21 4.5E-06 48.7 6.2 88 384-509 13-103 (375)
203 PRK13311 N-acetyl-D-glucosamin 93.1 0.2 4.4E-06 49.1 6.2 49 6-69 2-50 (256)
204 PF06110 DUF953: Eukaryotic pr 93.0 0.29 6.2E-06 41.7 6.1 76 383-486 18-101 (119)
205 COG3054 Predicted transcriptio 93.0 0.39 8.5E-06 41.8 6.9 147 357-511 25-182 (184)
206 PRK10877 protein disulfide iso 92.9 0.7 1.5E-05 44.5 9.6 110 383-512 106-231 (232)
207 TIGR02529 EutJ ethanolamine ut 92.6 0.28 6E-06 47.5 6.4 62 285-352 171-232 (239)
208 KOG0190|consensus 92.0 0.17 3.7E-06 53.5 4.2 34 383-417 383-416 (493)
209 TIGR02261 benz_CoA_red_D benzo 91.8 0.28 6.1E-06 47.8 5.2 54 279-339 181-236 (262)
210 TIGR02200 GlrX_actino Glutared 91.7 0.37 8E-06 37.1 5.0 22 388-410 2-23 (77)
211 PRK15080 ethanolamine utilizat 91.5 0.45 9.7E-06 47.0 6.4 63 284-352 197-259 (267)
212 PF13941 MutL: MutL protein 90.8 0.23 5E-06 52.3 3.7 31 6-37 2-35 (457)
213 PF03702 UPF0075: Uncharacteri 90.7 0.87 1.9E-05 46.8 7.8 58 284-345 258-316 (364)
214 PRK09698 D-allose kinase; Prov 90.4 0.61 1.3E-05 46.8 6.4 33 3-36 3-35 (302)
215 PRK13310 N-acetyl-D-glucosamin 90.3 0.58 1.3E-05 47.0 6.1 49 6-69 2-50 (303)
216 PRK09557 fructokinase; Reviewe 90.1 0.62 1.3E-05 46.8 6.2 48 6-68 2-49 (301)
217 PRK00292 glk glucokinase; Prov 90.1 0.31 6.7E-06 49.4 4.0 32 3-35 1-33 (316)
218 COG0533 QRI7 Metal-dependent p 89.7 3.1 6.8E-05 41.9 10.4 53 284-338 233-285 (342)
219 PF11009 DUF2847: Protein of u 89.6 1.8 3.9E-05 35.9 7.3 78 383-492 18-95 (105)
220 PRK15080 ethanolamine utilizat 89.6 0.7 1.5E-05 45.6 5.9 57 3-68 23-79 (267)
221 PRK09585 anmK anhydro-N-acetyl 89.1 0.95 2.1E-05 46.5 6.6 57 284-344 260-316 (365)
222 PRK12408 glucokinase; Provisio 89.0 0.29 6.3E-06 50.1 2.8 24 3-26 15-38 (336)
223 PRK13318 pantothenate kinase; 89.0 0.87 1.9E-05 44.7 6.1 38 284-323 185-224 (258)
224 PF01869 BcrAD_BadFG: BadF/Bad 88.9 0.38 8.3E-06 47.5 3.6 26 7-33 1-26 (271)
225 PF00480 ROK: ROK family; Int 88.6 0.83 1.8E-05 41.8 5.3 49 8-72 1-49 (179)
226 PRK13321 pantothenate kinase; 88.4 1 2.2E-05 44.1 6.1 39 284-323 185-224 (256)
227 TIGR02180 GRX_euk Glutaredoxin 88.3 0.5 1.1E-05 37.0 3.2 36 388-427 1-36 (84)
228 KOG0191|consensus 87.8 1.7 3.7E-05 45.3 7.6 90 384-512 162-252 (383)
229 PRK05082 N-acetylmannosamine k 87.7 1.3 2.8E-05 44.2 6.5 50 6-69 3-52 (291)
230 PF11104 PilM_2: Type IV pilus 87.4 1.6 3.5E-05 44.6 7.2 63 284-349 243-309 (340)
231 PF00349 Hexokinase_1: Hexokin 86.4 0.84 1.8E-05 43.1 4.0 57 5-69 64-120 (206)
232 smart00842 FtsA Cell division 86.2 1.5 3.2E-05 40.7 5.5 60 6-73 1-63 (187)
233 cd02976 NrdH NrdH-redoxin (Nrd 86.1 2 4.2E-05 32.2 5.3 33 388-428 2-34 (73)
234 COG2377 Predicted molecular ch 85.4 2.7 6E-05 42.5 7.2 53 283-339 263-315 (371)
235 COG4972 PilM Tfp pilus assembl 85.4 2.8 6.1E-05 41.8 7.1 67 285-353 257-326 (354)
236 cd03020 DsbA_DsbC_DsbG DsbA fa 85.3 2.8 6.1E-05 39.1 7.0 26 383-409 76-101 (197)
237 COG3734 DgoK 2-keto-3-deoxy-ga 85.1 1 2.3E-05 43.7 3.9 32 1-33 2-33 (306)
238 cd03023 DsbA_Com1_like DsbA fa 84.8 1.2 2.7E-05 39.1 4.2 39 383-424 4-42 (154)
239 PTZ00340 O-sialoglycoprotein e 84.7 2.9 6.4E-05 42.6 7.2 60 285-346 236-298 (345)
240 TIGR03143 AhpF_homolog putativ 84.7 6.1 0.00013 43.5 10.3 79 384-508 476-554 (555)
241 PF05378 Hydant_A_N: Hydantoin 84.4 2 4.4E-05 39.4 5.5 29 7-36 2-30 (176)
242 PRK11200 grxA glutaredoxin 1; 84.1 2.1 4.4E-05 33.9 4.7 38 388-428 3-40 (85)
243 TIGR02261 benz_CoA_red_D benzo 83.9 2.8 6.1E-05 40.9 6.4 22 5-26 2-23 (262)
244 TIGR00329 gcp_kae1 metallohydr 83.2 3.8 8.2E-05 41.3 7.3 53 284-338 230-282 (305)
245 PRK14878 UGMP family protein; 83.0 3.6 7.8E-05 41.8 7.1 62 284-347 213-277 (323)
246 PRK13410 molecular chaperone D 82.8 4.7 0.0001 45.3 8.6 62 285-347 300-361 (668)
247 COG4820 EutJ Ethanolamine util 81.5 1.8 3.9E-05 39.9 3.7 58 289-352 207-264 (277)
248 PRK14101 bifunctional glucokin 81.3 0.99 2.1E-05 50.5 2.5 31 5-36 19-49 (638)
249 TIGR03723 bact_gcp putative gl 81.2 3.7 8.1E-05 41.5 6.4 62 284-347 231-295 (314)
250 TIGR02529 EutJ ethanolamine ut 81.1 2.2 4.7E-05 41.4 4.5 51 8-67 1-51 (239)
251 PF06723 MreB_Mbl: MreB/Mbl pr 80.6 4.2 9E-05 41.3 6.5 37 315-352 275-311 (326)
252 TIGR00744 ROK_glcA_fam ROK fam 80.4 3 6.5E-05 42.1 5.5 28 7-35 1-28 (318)
253 PF07976 Phe_hydrox_dim: Pheno 80.4 11 0.00023 34.4 8.6 116 351-468 26-166 (169)
254 TIGR03722 arch_KAE1 universal 80.0 4.3 9.3E-05 41.2 6.4 62 284-347 214-278 (322)
255 PRK09604 UGMP family protein; 79.4 5.2 0.00011 40.8 6.9 62 284-347 226-290 (332)
256 cd02979 PHOX_C FAD-dependent P 79.2 36 0.00079 30.8 11.6 124 358-491 1-152 (167)
257 TIGR01174 ftsA cell division p 78.7 3.5 7.5E-05 42.8 5.5 56 285-346 285-346 (371)
258 PTZ00186 heat shock 70 kDa pre 78.7 9.2 0.0002 42.9 9.0 60 285-345 325-384 (657)
259 TIGR02190 GlrX-dom Glutaredoxi 78.5 4.8 0.0001 31.3 5.0 36 385-428 7-42 (79)
260 CHL00094 dnaK heat shock prote 78.4 9.8 0.00021 42.5 9.2 34 314-348 329-362 (621)
261 PRK13928 rod shape-determining 78.4 5.7 0.00012 40.5 6.9 63 285-350 244-311 (336)
262 TIGR03123 one_C_unchar_1 proba 78.1 2.7 5.9E-05 42.3 4.2 50 7-70 1-50 (318)
263 KOG4277|consensus 78.0 4.9 0.00011 39.3 5.7 65 386-487 45-112 (468)
264 TIGR01175 pilM type IV pilus a 77.9 6.2 0.00013 40.4 7.0 59 286-347 253-315 (348)
265 cd02972 DsbA_family DsbA famil 77.4 6.1 0.00013 31.2 5.5 36 389-426 2-37 (98)
266 PRK13929 rod-share determining 77.0 6.1 0.00013 40.3 6.6 60 288-350 250-314 (335)
267 PF00462 Glutaredoxin: Glutare 76.2 3.9 8.6E-05 29.7 3.7 34 388-429 1-34 (60)
268 PLN02914 hexokinase 76.1 5.4 0.00012 42.7 6.0 58 5-70 96-155 (490)
269 PRK00290 dnaK molecular chaper 76.1 13 0.00028 41.6 9.3 63 285-348 298-360 (627)
270 PF11104 PilM_2: Type IV pilus 75.9 4.2 9.1E-05 41.6 5.1 62 8-75 1-64 (340)
271 cd02066 GRX_family Glutaredoxi 75.5 5.7 0.00012 29.4 4.6 33 388-428 2-34 (72)
272 PLN02596 hexokinase-like 75.3 5.5 0.00012 42.7 5.8 58 5-70 97-156 (490)
273 PF02114 Phosducin: Phosducin; 75.3 16 0.00034 35.9 8.6 92 383-513 145-239 (265)
274 KOG3425|consensus 74.6 6.7 0.00015 33.1 4.8 45 383-428 24-75 (128)
275 PLN02920 pantothenate kinase 1 74.5 39 0.00085 35.0 11.4 69 283-353 268-343 (398)
276 PRK11678 putative chaperone; P 74.0 9.1 0.0002 40.8 7.1 64 286-355 375-441 (450)
277 PHA03050 glutaredoxin; Provisi 73.5 5.6 0.00012 33.2 4.3 22 388-410 15-36 (108)
278 TIGR02350 prok_dnaK chaperone 73.4 17 0.00036 40.4 9.4 96 286-385 297-398 (595)
279 TIGR01175 pilM type IV pilus a 73.2 12 0.00025 38.4 7.6 62 3-70 2-65 (348)
280 cd03019 DsbA_DsbA DsbA family, 72.9 6.2 0.00013 35.8 4.9 41 383-425 14-54 (178)
281 PF13462 Thioredoxin_4: Thiore 72.9 7.3 0.00016 34.6 5.3 48 378-426 6-54 (162)
282 TIGR02189 GlrX-like_plant Glut 72.1 7.1 0.00015 32.0 4.5 20 388-408 10-29 (99)
283 PRK15317 alkyl hydroperoxide r 72.0 25 0.00055 38.2 10.2 32 381-413 113-144 (517)
284 PRK13320 pantothenate kinase; 71.1 4.4 9.6E-05 39.3 3.6 53 284-344 175-227 (244)
285 cd03419 GRX_GRXh_1_2_like Glut 70.8 7.3 0.00016 30.1 4.3 24 388-412 2-25 (82)
286 TIGR02183 GRXA Glutaredoxin, G 70.5 7.7 0.00017 30.8 4.3 37 388-427 2-38 (86)
287 COG5026 Hexokinase [Carbohydra 70.3 10 0.00023 39.3 6.1 57 4-69 75-133 (466)
288 PLN02405 hexokinase 70.2 9.1 0.0002 41.1 6.0 58 5-70 96-155 (497)
289 cd03418 GRX_GRXb_1_3_like Glut 70.0 12 0.00026 28.4 5.2 33 388-428 2-34 (75)
290 TIGR01174 ftsA cell division p 69.8 9.7 0.00021 39.4 6.1 57 5-69 1-60 (371)
291 TIGR02194 GlrX_NrdH Glutaredox 69.7 10 0.00022 28.8 4.7 31 390-428 3-33 (72)
292 PLN02362 hexokinase 69.1 9.2 0.0002 41.2 5.8 58 5-70 96-155 (509)
293 PRK13927 rod shape-determining 68.7 12 0.00025 38.1 6.4 62 286-350 246-312 (334)
294 COG0695 GrxC Glutaredoxin and 67.9 13 0.00028 29.1 5.0 42 388-437 3-46 (80)
295 TIGR00749 glk glucokinase, pro 67.7 3.9 8.5E-05 41.4 2.6 24 7-31 1-24 (316)
296 COG4020 Uncharacterized protei 67.7 5 0.00011 38.4 3.0 24 4-27 3-26 (332)
297 TIGR00143 hypF [NiFe] hydrogen 67.7 9.8 0.00021 43.0 5.9 60 284-345 630-692 (711)
298 PTZ00400 DnaK-type molecular c 67.1 23 0.0005 39.8 8.7 62 286-348 340-401 (663)
299 PRK09605 bifunctional UGMP fam 67.1 14 0.00031 40.3 7.0 61 284-346 217-280 (535)
300 PLN03184 chloroplast Hsp70; Pr 67.0 24 0.00052 39.8 8.8 82 286-368 338-425 (673)
301 PRK05183 hscA chaperone protei 66.8 13 0.00027 41.5 6.6 62 285-347 300-361 (616)
302 cd03029 GRX_hybridPRX5 Glutare 66.7 14 0.00031 27.8 5.0 32 388-427 3-34 (72)
303 PRK13930 rod shape-determining 66.2 13 0.00029 37.7 6.2 61 286-349 250-315 (335)
304 PRK00290 dnaK molecular chaper 66.1 5.3 0.00012 44.6 3.5 22 5-27 3-24 (627)
305 COG4972 PilM Tfp pilus assembl 64.8 34 0.00074 34.4 8.2 70 5-80 11-82 (354)
306 TIGR01991 HscA Fe-S protein as 64.7 14 0.00031 40.9 6.5 62 285-347 284-345 (599)
307 PTZ00107 hexokinase; Provision 64.6 11 0.00023 40.3 5.2 64 5-70 75-141 (464)
308 TIGR00904 mreB cell shape dete 63.9 18 0.00039 36.8 6.6 63 285-350 248-315 (333)
309 PRK10329 glutaredoxin-like pro 63.6 26 0.00056 27.4 6.0 33 388-428 3-35 (81)
310 PTZ00009 heat shock 70 kDa pro 63.5 6.8 0.00015 44.0 3.7 58 286-344 305-363 (653)
311 PF07318 DUF1464: Protein of u 63.1 6.2 0.00014 39.9 2.9 45 8-65 1-45 (343)
312 CHL00094 dnaK heat shock prote 63.0 6.5 0.00014 43.9 3.4 23 4-27 2-24 (621)
313 PRK13411 molecular chaperone D 62.0 32 0.00069 38.7 8.6 77 286-368 300-388 (653)
314 TIGR03140 AhpF alkyl hydropero 61.7 55 0.0012 35.6 10.2 33 380-413 113-145 (515)
315 PF00012 HSP70: Hsp70 protein; 61.4 16 0.00035 40.5 6.2 61 287-348 302-362 (602)
316 PRK12440 acetate kinase; Revie 61.1 8.3 0.00018 39.9 3.5 49 289-339 296-346 (397)
317 COG1548 Predicted transcriptio 60.0 5.4 0.00012 38.4 1.7 55 287-346 253-307 (330)
318 cd03027 GRX_DEP Glutaredoxin ( 60.0 25 0.00054 26.6 5.3 33 388-428 3-35 (73)
319 COG3894 Uncharacterized metal- 59.9 8.8 0.00019 40.4 3.4 30 3-33 163-193 (614)
320 COG1331 Highly conserved prote 59.9 85 0.0018 34.8 10.9 98 380-510 39-148 (667)
321 TIGR02181 GRX_bact Glutaredoxi 59.2 16 0.00035 28.1 4.2 20 389-409 2-21 (79)
322 PRK10954 periplasmic protein d 58.6 11 0.00024 35.5 3.7 41 383-425 36-79 (207)
323 PTZ00009 heat shock 70 kDa pro 58.4 36 0.00078 38.3 8.2 23 1-23 1-23 (653)
324 PRK13411 molecular chaperone D 58.3 8.4 0.00018 43.2 3.2 23 4-27 2-24 (653)
325 PTZ00288 glucokinase 1; Provis 58.0 23 0.00049 37.2 6.1 20 4-23 26-45 (405)
326 COG0145 HyuA N-methylhydantoin 57.5 13 0.00028 41.6 4.5 34 3-37 1-34 (674)
327 COG0443 DnaK Molecular chapero 57.4 10 0.00022 41.9 3.6 35 313-348 309-343 (579)
328 PRK01433 hscA chaperone protei 57.3 29 0.00063 38.5 7.2 61 285-348 282-342 (595)
329 TIGR00016 ackA acetate kinase. 56.8 11 0.00023 39.3 3.4 48 290-339 303-353 (404)
330 PRK13410 molecular chaperone D 56.6 9.4 0.0002 42.9 3.2 23 4-27 2-24 (668)
331 TIGR00365 monothiol glutaredox 56.1 31 0.00067 28.1 5.5 37 384-427 11-50 (97)
332 KOG0103|consensus 56.0 30 0.00065 38.1 6.6 86 286-380 306-404 (727)
333 PLN02902 pantothenate kinase 55.4 1E+02 0.0022 35.4 10.9 56 283-339 317-372 (876)
334 PRK00109 Holliday junction res 55.3 17 0.00038 31.8 4.1 27 1-27 1-27 (138)
335 TIGR02707 butyr_kinase butyrat 54.8 11 0.00023 38.8 3.0 60 288-349 267-330 (351)
336 COG0849 ftsA Cell division ATP 54.7 28 0.00062 36.5 6.2 62 285-347 292-353 (418)
337 KOG0911|consensus 54.5 12 0.00026 35.3 3.0 43 383-428 16-58 (227)
338 PRK07058 acetate kinase; Provi 54.4 12 0.00026 38.7 3.3 49 289-339 294-344 (396)
339 PF14450 FtsA: Cell division p 54.2 14 0.00031 31.3 3.3 19 6-24 1-19 (120)
340 cd02983 P5_C P5 family, C-term 53.3 1.5E+02 0.0032 25.6 9.5 46 459-513 70-116 (130)
341 PRK11678 putative chaperone; P 52.8 11 0.00024 40.2 2.9 21 6-27 2-22 (450)
342 cd03028 GRX_PICOT_like Glutare 51.8 33 0.00071 27.4 4.9 26 383-409 6-35 (90)
343 PF00012 HSP70: Hsp70 protein; 50.5 13 0.00028 41.2 3.2 19 6-24 1-19 (602)
344 PHA03075 glutaredoxin-like pro 50.1 14 0.0003 31.0 2.4 40 385-425 2-41 (123)
345 PRK00039 ruvC Holliday junctio 49.7 40 0.00086 30.5 5.6 25 3-27 1-25 (164)
346 PTZ00186 heat shock 70 kDa pre 49.3 18 0.00039 40.6 4.0 21 4-24 27-47 (657)
347 COG4820 EutJ Ethanolamine util 48.9 32 0.0007 32.0 4.8 29 3-32 28-56 (277)
348 PRK01433 hscA chaperone protei 48.4 17 0.00037 40.2 3.6 23 4-27 19-41 (595)
349 PRK10638 glutaredoxin 3; Provi 48.0 42 0.00092 26.1 5.0 33 388-428 4-36 (83)
350 TIGR02350 prok_dnaK chaperone 48.0 15 0.00033 40.7 3.2 22 5-27 1-22 (595)
351 COG2179 Predicted hydrolase of 48.0 37 0.00081 30.6 4.9 37 403-439 47-83 (175)
352 TIGR01865 cas_Csn1 CRISPR-asso 47.4 15 0.00033 42.1 3.1 23 4-26 1-23 (805)
353 PRK13331 pantothenate kinase; 47.4 22 0.00047 34.6 3.7 111 168-323 96-213 (251)
354 PF06053 DUF929: Domain of unk 47.2 33 0.00071 33.3 4.9 33 383-416 57-89 (249)
355 COG1077 MreB Actin-like ATPase 47.1 36 0.00079 34.1 5.2 60 287-352 254-321 (342)
356 PF06953 ArsD: Arsenical resis 45.7 1.7E+02 0.0037 25.1 8.5 41 388-428 4-50 (123)
357 COG3426 Butyrate kinase [Energ 45.5 83 0.0018 31.0 7.2 59 287-348 269-332 (358)
358 PRK07157 acetate kinase; Provi 45.1 20 0.00042 37.3 3.2 50 289-340 295-347 (400)
359 PF03652 UPF0081: Uncharacteri 44.9 32 0.00069 30.0 4.1 24 4-27 1-24 (135)
360 TIGR03765 ICE_PFL_4695 integra 44.7 1.6E+02 0.0035 24.4 7.7 69 401-485 34-102 (105)
361 PRK13326 pantothenate kinase; 44.6 25 0.00053 34.6 3.7 53 284-344 187-240 (262)
362 COG1521 Pantothenate kinase ty 44.4 65 0.0014 31.3 6.4 108 169-323 106-222 (251)
363 TIGR03706 exo_poly_only exopol 44.3 44 0.00094 33.5 5.5 19 6-24 2-20 (300)
364 PRK05183 hscA chaperone protei 43.7 22 0.00048 39.6 3.6 22 4-26 19-40 (616)
365 TIGR00671 baf pantothenate kin 42.9 54 0.0012 31.7 5.7 42 284-327 177-219 (243)
366 COG0248 GppA Exopolyphosphatas 42.8 38 0.00082 36.5 5.0 34 3-36 2-37 (492)
367 PTZ00400 DnaK-type molecular c 42.8 20 0.00044 40.3 3.1 19 5-23 42-60 (663)
368 PRK00976 hypothetical protein; 42.4 22 0.00047 35.9 2.9 49 286-340 241-291 (326)
369 TIGR03281 methan_mark_12 putat 42.3 15 0.00032 36.5 1.7 58 287-348 240-299 (326)
370 PF05035 DGOK: 2-keto-3-deoxy- 41.9 19 0.00042 35.8 2.5 37 314-352 243-279 (287)
371 PRK12397 propionate kinase; Re 41.8 24 0.00052 36.7 3.2 48 289-338 297-346 (404)
372 COG3513 Predicted CRISPR-assoc 41.1 23 0.0005 39.6 3.0 25 1-25 1-25 (1088)
373 PF11072 DUF2859: Protein of u 40.4 1.9E+02 0.004 25.5 8.0 69 401-485 72-140 (142)
374 PF03630 Fumble: Fumble ; Int 40.3 70 0.0015 32.7 6.3 68 283-351 258-331 (341)
375 KOG1369|consensus 40.2 45 0.00098 35.5 5.0 60 4-71 86-146 (474)
376 PLN03184 chloroplast Hsp70; Pr 40.1 25 0.00055 39.6 3.4 22 4-26 39-60 (673)
377 KOG1794|consensus 39.1 35 0.00075 33.7 3.6 33 3-36 2-34 (336)
378 PF00814 Peptidase_M22: Glycop 39.1 87 0.0019 30.8 6.6 59 286-346 195-255 (268)
379 PRK13738 conjugal transfer pil 39.1 1.7E+02 0.0036 27.7 8.1 72 401-495 131-204 (209)
380 COG0068 HypF Hydrogenase matur 38.6 78 0.0017 35.3 6.5 54 284-340 665-719 (750)
381 TIGR03143 AhpF_homolog putativ 38.2 1.8E+02 0.0039 32.0 9.6 30 456-491 407-439 (555)
382 PF03309 Pan_kinase: Type III 38.2 35 0.00075 32.1 3.5 32 170-201 105-138 (206)
383 PRK10824 glutaredoxin-4; Provi 38.0 47 0.001 28.1 3.9 26 384-410 14-43 (115)
384 COG0816 Predicted endonuclease 37.9 41 0.00088 29.6 3.6 24 4-27 2-25 (141)
385 TIGR00904 mreB cell shape dete 37.6 27 0.00059 35.5 2.9 20 7-27 5-24 (333)
386 COG1651 DsbG Protein-disulfide 37.4 51 0.0011 31.6 4.7 38 381-419 81-118 (244)
387 KOG2603|consensus 37.1 1.6E+02 0.0034 29.5 7.8 119 380-527 56-181 (331)
388 PF06491 Disulph_isomer: Disul 36.9 1.1E+02 0.0024 26.3 5.9 37 474-511 95-131 (136)
389 cd03036 ArsC_like Arsenate Red 35.8 42 0.00091 28.0 3.3 42 391-439 3-48 (111)
390 PRK08294 phenol 2-monooxygenas 35.6 3E+02 0.0065 30.8 10.9 130 355-491 463-615 (634)
391 PRK13324 pantothenate kinase; 35.2 40 0.00087 33.0 3.5 39 284-323 185-224 (258)
392 TIGR01991 HscA Fe-S protein as 35.0 28 0.00061 38.6 2.7 21 6-27 1-21 (599)
393 PF08821 CGGC: CGGC domain; I 34.8 94 0.002 25.9 5.1 46 376-426 27-73 (107)
394 PRK13328 pantothenate kinase; 34.7 44 0.00095 32.7 3.7 52 284-344 185-238 (255)
395 PF01548 DEDD_Tnp_IS110: Trans 34.7 47 0.001 28.9 3.6 30 6-36 1-30 (144)
396 KOG1752|consensus 34.4 79 0.0017 26.2 4.6 14 388-402 16-29 (104)
397 PRK10854 exopolyphosphatase; P 33.9 63 0.0014 35.1 5.1 22 3-24 10-31 (513)
398 PRK00180 acetate kinase A/prop 33.7 1.4E+02 0.003 31.3 7.3 48 290-339 299-349 (402)
399 PRK03011 butyrate kinase; Prov 33.7 38 0.00083 34.9 3.2 62 287-350 268-333 (358)
400 PRK13928 rod shape-determining 33.7 31 0.00067 35.1 2.6 20 7-27 6-25 (336)
401 TIGR00671 baf pantothenate kin 33.6 97 0.0021 30.0 5.9 33 169-201 100-134 (243)
402 COG0849 ftsA Cell division ATP 33.5 1.1E+02 0.0023 32.3 6.4 67 5-79 7-76 (418)
403 PRK13327 pantothenate kinase; 33.4 1.5E+02 0.0033 28.7 7.1 38 284-323 171-210 (242)
404 PRK11031 guanosine pentaphosph 33.0 77 0.0017 34.3 5.6 27 309-336 276-302 (496)
405 KOG2708|consensus 33.0 1.5E+02 0.0032 28.3 6.5 54 283-338 225-278 (336)
406 PF05768 DUF836: Glutaredoxin- 32.7 31 0.00067 26.9 1.9 36 388-427 2-37 (81)
407 PRK01655 spxA transcriptional 32.7 70 0.0015 27.6 4.3 64 390-467 3-70 (131)
408 PRK13322 pantothenate kinase; 32.4 45 0.00097 32.4 3.3 38 284-323 177-216 (246)
409 cd03032 ArsC_Spx Arsenate Redu 32.1 76 0.0017 26.6 4.3 63 390-466 3-69 (115)
410 PF04848 Pox_A22: Poxvirus A22 32.0 58 0.0013 28.7 3.6 24 4-27 1-24 (143)
411 cd02977 ArsC_family Arsenate R 32.0 66 0.0014 26.3 3.9 42 391-439 3-48 (105)
412 PF08235 LNS2: LNS2 (Lipin/Ned 31.7 67 0.0015 28.8 4.0 63 366-440 3-68 (157)
413 PRK07058 acetate kinase; Provi 30.5 1.4E+02 0.0031 31.1 6.7 25 1-25 1-25 (396)
414 TIGR01617 arsC_related transcr 30.5 71 0.0015 26.9 3.9 60 392-465 4-67 (117)
415 PRK03011 butyrate kinase; Prov 29.6 1.6E+02 0.0035 30.3 7.0 31 4-36 2-32 (358)
416 PRK13344 spxA transcriptional 29.6 92 0.002 27.0 4.5 62 391-466 4-69 (132)
417 PRK10026 arsenate reductase; P 29.2 1.9E+02 0.0041 25.4 6.4 97 389-508 4-116 (141)
418 PRK12559 transcriptional regul 29.1 1E+02 0.0022 26.7 4.6 64 390-467 3-70 (131)
419 COG1521 Pantothenate kinase ty 28.9 79 0.0017 30.8 4.3 29 6-36 2-30 (251)
420 PF09673 TrbC_Ftype: Type-F co 28.5 3.5E+02 0.0076 22.6 8.2 68 405-483 11-80 (113)
421 TIGR02742 TrbC_Ftype type-F co 28.3 3.9E+02 0.0085 23.1 9.0 22 457-484 60-81 (130)
422 COG3769 Predicted hydrolase (H 27.3 1.3E+02 0.0027 28.7 5.1 83 410-512 31-114 (274)
423 PRK13331 pantothenate kinase; 26.9 4.2E+02 0.0091 25.8 8.9 20 4-23 7-26 (251)
424 PF06723 MreB_Mbl: MreB/Mbl pr 26.6 51 0.0011 33.5 2.7 14 6-19 3-16 (326)
425 TIGR03759 conj_TIGR03759 integ 26.6 1.3E+02 0.0028 28.0 5.0 80 387-485 111-197 (200)
426 KOG2961|consensus 26.0 2E+02 0.0042 25.7 5.7 69 376-455 34-115 (190)
427 PF00871 Acetate_kinase: Aceto 25.5 88 0.0019 32.6 4.2 49 289-339 295-346 (388)
428 TIGR02743 TraW type-F conjugat 25.3 2.2E+02 0.0047 26.8 6.4 67 402-491 134-200 (202)
429 PRK13929 rod-share determining 25.2 75 0.0016 32.3 3.7 13 6-18 6-18 (335)
430 TIGR00016 ackA acetate kinase. 25.1 2.6E+02 0.0055 29.4 7.4 25 1-25 1-25 (404)
431 PF01323 DSBA: DSBA-like thior 23.9 98 0.0021 28.1 3.9 41 388-429 2-42 (193)
432 TIGR02707 butyr_kinase butyrat 23.9 2.5E+02 0.0055 28.8 7.2 24 6-30 2-25 (351)
433 PRK13930 rod shape-determining 23.7 54 0.0012 33.2 2.3 16 6-21 10-25 (335)
434 PRK12379 propionate/acetate ki 23.5 81 0.0018 32.9 3.5 47 290-338 294-342 (396)
435 COG0443 DnaK Molecular chapero 23.3 1.8E+02 0.0038 32.3 6.3 22 4-25 5-26 (579)
436 TIGR00099 Cof-subfamily Cof su 22.9 3.9E+02 0.0084 25.6 8.1 32 408-439 22-53 (256)
437 cd00529 RuvC_resolvase Hollida 22.9 1.8E+02 0.004 25.8 5.3 22 6-27 2-23 (154)
438 PF04312 DUF460: Protein of un 22.6 1.1E+02 0.0025 26.6 3.6 30 4-35 32-61 (138)
439 PLN03098 LPA1 LOW PSII ACCUMUL 22.5 2.3E+02 0.0049 30.1 6.5 51 375-427 287-337 (453)
440 PRK13927 rod shape-determining 22.4 61 0.0013 32.8 2.4 15 6-20 7-21 (334)
441 PRK12440 acetate kinase; Revie 22.3 2.9E+02 0.0062 28.9 7.1 25 1-25 1-25 (397)
442 PLN02666 5-oxoprolinase 21.9 97 0.0021 37.6 4.1 65 284-352 455-524 (1275)
443 PRK12759 bifunctional gluaredo 21.9 1.8E+02 0.0039 30.6 5.8 33 388-428 4-36 (410)
444 COG2236 Predicted phosphoribos 21.8 4.7E+02 0.01 24.3 7.8 36 314-352 30-66 (192)
445 PRK12359 flavodoxin FldB; Prov 21.6 6.1E+02 0.013 23.0 9.5 23 317-341 6-28 (172)
446 PF07066 DUF3882: Lactococcus 21.6 2.2E+02 0.0047 25.1 5.1 59 3-72 1-64 (159)
447 PRK15126 thiamin pyrimidine py 21.2 4.4E+02 0.0095 25.5 8.2 30 410-439 27-56 (272)
448 COG4012 Uncharacterized protei 21.2 2.1E+02 0.0047 27.9 5.4 30 5-36 228-257 (342)
449 PRK13329 pantothenate kinase; 21.0 75 0.0016 30.9 2.5 32 1-36 1-35 (249)
450 PF01869 BcrAD_BadFG: BadF/Bad 20.5 3.5E+02 0.0077 26.2 7.3 64 287-352 193-263 (271)
451 PF02966 DIM1: Mitosis protein 20.3 2.6E+02 0.0055 24.3 5.2 44 383-428 19-62 (133)
452 COG1634 Uncharacterized Rossma 20.0 2.3E+02 0.005 27.0 5.4 117 315-467 53-173 (232)
453 KOG1386|consensus 20.0 2E+02 0.0043 30.7 5.4 69 3-74 8-79 (501)
No 1
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=5.1e-55 Score=467.34 Aligned_cols=321 Identities=20% Similarity=0.269 Sum_probs=267.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH---------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH--------------------- 63 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~--------------------- 63 (547)
++||||+||||+|++|+|.+|++ +++++.+|+... +.+|+.||||++||+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~v-va~~~~~~~~~~-----~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEV-VASQTEKLTVSR-----PHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCE-EEEEeecccccC-----CCCCccccCHHHHHHHHHHHHHHHHHhCCccceeEEEEe
Confidence 48999999999999999999998 999988886543 467999999999998543
Q ss_pred -----------------HHHhhCCchhhhhhceeccC------------------------------------CCcchhh
Q psy224 64 -----------------NCILRLPKDHLKQVKHIEST------------------------------------NDLSFQD 90 (547)
Q Consensus 64 -----------------~~i~~~d~r~~~~~~~i~~~------------------------------------~~l~~~d 90 (547)
++|.|.|.|+.++++.+... .+++++|
T Consensus 75 ~q~~~~v~~D~~g~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~d 154 (484)
T PRK15027 75 GQMHGATLLDAQQRVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKD 154 (484)
T ss_pred cCCCceEEECCCcCCccccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhhcChHH
Confidence 44678999988776554310 1578999
Q ss_pred HHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEe
Q psy224 91 FIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINV 167 (547)
Q Consensus 91 ~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~ 167 (547)
||.|+||| +.++|+|+||+|++||+++++|++++++.+ +|++++||+++++++++|+|++++ +||+ ++||++
T Consensus 155 yl~~~LTG--~~~~d~s~as~t~l~d~~~~~w~~~ll~~~--gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL~-~~pV~~ 229 (484)
T PRK15027 155 YLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQAC--HLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVA 229 (484)
T ss_pred HHHhhhcC--CccccHHHhhcccccccccCCCcHHHHHHh--CCCHHHCCCCCCCccccccccHHHHHHhCCC-CCeEEe
Confidence 99999999 999999999999999999999999999999 599999999999999999999987 9997 699999
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------ccc------ccccchhH---HHHHhHHHHHHHHhCCCCc
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGA------SMNGGNCL---ATFVCTLQNWFKEFGFNVP 231 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~------~~~gg~~~---~~~~g~~~~w~~~~~~~~~ 231 (547)
|++|++|+++|+|+. +|++++|+|||.++..+++ .+. ..++.+.+ ..++|.+++|+++.+.. .
T Consensus 230 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-~ 308 (484)
T PRK15027 230 GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-S 308 (484)
T ss_pred cccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-c
Confidence 999999999999997 7999999999988765432 110 11222211 24577889999997532 2
Q ss_pred hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy224 232 QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSV 308 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~ 308 (547)
. ++++.+. .+++++++++++|+|||.|+|+|++++ |+|+|++.+| +++||+||++||++|.+|++++ .
T Consensus 309 ~---~~~~~~~---a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~-~~~~l~rAvlEgia~~~~~~~~--~ 379 (484)
T PRK15027 309 N---VPALIAA---AQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQH-GPNELARAVLEGVGYALADGMD--V 379 (484)
T ss_pred c---HHHHHHH---HhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--H
Confidence 1 2222221 234567889999999999999999885 8999999997 9999999999999999999999 4
Q ss_pred hhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 309 LHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 309 l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
+++.| +++|+++||| +||++|+|++||++|+||.+...
T Consensus 380 l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pv~~~~~ 419 (484)
T PRK15027 380 VHACGIKPQSVTLIGGG-ARSEYWRQMLADISGQQLDYRTG 419 (484)
T ss_pred HHHcCCCccEEEEeCcc-cCCHHHHHHHHHHhCCeEEeecC
Confidence 76655 6899999998 99999999999999999976543
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=8.9e-55 Score=467.90 Aligned_cols=331 Identities=21% Similarity=0.304 Sum_probs=272.0
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH----------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL---------------------- 62 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~---------------------- 62 (547)
|+||||+|||++|++++|.+|++ ++..+.+++... +.+|+.|||+++||+.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~I~~Igi 74 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKI-VAKSSIGYPLYT-----PASGMAEENPEEIFEAVLVTIREVSINLEDEDEILFVSF 74 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCE-EEEEEeeccccc-----CCCCCeeeCHHHHHHHHHHHHHHHHHhCCCcCceEEEEE
Confidence 58999999999999999999998 888888876433 46799999999999843
Q ss_pred -----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcc
Q psy224 63 -----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLS 87 (547)
Q Consensus 63 -----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~ 87 (547)
.++|.|.|.|+.++++.+... .+++
T Consensus 75 s~~~~~~v~~D~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~ 154 (505)
T TIGR01314 75 STQMHSLIAFDENWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAAKYLE 154 (505)
T ss_pred ecccceeEEECCCcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhcEEEC
Confidence 344678899987665544210 1578
Q ss_pred hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCe
Q psy224 88 FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164 (547)
Q Consensus 88 ~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~ 164 (547)
++|||.|+||| +.++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++|+|
T Consensus 155 ~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL~~g~p 230 (505)
T TIGR01314 155 IKGYIFQRLFG--TYKIDYSTASATGMFNLFELDWDKEALELT--GIKESQLPKLVPTTEIEENLPHEYAKKMGIQSSTP 230 (505)
T ss_pred HHHHHHHHHcC--CceeEhhhhhhhcceeCCCCCCCHHHHHhc--CCCHHHCCCCcCcccccCCcCHHHHHHhCCCCCCe
Confidence 99999999999 999999999999999999999999999999 599999999999999999999987 99999999
Q ss_pred EEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc----cc-cchhH---HHHHhHHHHHHHHhCCC
Q psy224 165 INVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS----MN-GGNCL---ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 165 V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~----~~-gg~~~---~~~~g~~~~w~~~~~~~ 229 (547)
|++|++|++|+++|+|+. +|++++|+|||+++.++.+ .+.. .. +.+.. ..++|.+++||++.+..
T Consensus 231 V~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~ 310 (505)
T TIGR01314 231 FVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDVLRWARDEIFD 310 (505)
T ss_pred EEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEecCCcEEEEeeecchHhHHHHHHHHhhh
Confidence 999999999999999997 8999999999999876532 1111 11 11111 24577889999997542
Q ss_pred Cch-------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHH
Q psy224 230 VPQ-------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~ 299 (547)
... ...++.+.+. ++++++++++++|+|||.|+|.|++++ |+|+|++..| +++||+||++||++|.
T Consensus 311 ~~~~~~~~~~~~~y~~l~~~---a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~-~~~~l~rAvlEgia~~ 386 (505)
T TIGR01314 311 SEIETATRLGIDPYDVLTEI---AARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSH-KKEHMIRAALEGVIYN 386 (505)
T ss_pred hhhhhhhhcCCCHHHHHHHH---HhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCC-CHHHHHHHHHHHHHHH
Confidence 100 0123333221 235667888999999999999999885 7999999997 9999999999999999
Q ss_pred HHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 300 IHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 300 ~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|++++. +++ .+ +++|+++||+ +||+.|+|++||++|+||.+...++..+
T Consensus 387 ~~~~~~~--~~~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pv~~~~~~e~~a 439 (505)
T TIGR01314 387 LYTVALA--LVEVMGDPLNMIQATGGF-ASSEVWRQMMSDIFEQEIVVPESYESSC 439 (505)
T ss_pred HHHHHHH--HHHhcCCCCcEEEEecCc-ccCHHHHHHHHHHcCCeeEecCCCCcch
Confidence 9999984 544 45 6899999998 9999999999999999999988766443
No 3
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.2e-54 Score=462.91 Aligned_cols=327 Identities=17% Similarity=0.250 Sum_probs=268.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH---------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL--------------------- 62 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~--------------------- 62 (547)
+|+||||+||||+|++|+|.+|++ ++.++.+++... ..+.+|+.||||++||+++
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~-~~~~~~~~~~~~---~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~~~~I~~I~i 77 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKI-VARASTPNASDI---AAENSDWHQWSLDAILQRFADCCRQINSELTECHIRGITV 77 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcE-EEEEeccccccc---CCCCCCCcccCHHHHHHHHHHHHHHHHHhCCccceEEEEE
Confidence 589999999999999999999998 899888875321 2357899999999999854
Q ss_pred -----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcc
Q psy224 63 -----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLS 87 (547)
Q Consensus 63 -----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~ 87 (547)
+++|.|+|+|+.++++.+... .+++
T Consensus 78 s~~~~~~v~~D~~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~ 157 (470)
T PRK10331 78 TTFGVDGALVDKQGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQAHAWLF 157 (470)
T ss_pred eccccceEEECCCcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHHHhhhhcC
Confidence 344778999987665443210 1579
Q ss_pred hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCe
Q psy224 88 FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164 (547)
Q Consensus 88 ~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~ 164 (547)
++|||.|+||| ++++|+|+||+|++||+++++|++++++.+ ||++++||+++++++++|+|++++ +||++|+|
T Consensus 158 ~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~i~~~g~~~G~v~~~~a~~~GL~~g~p 233 (470)
T PRK10331 158 ISSLINHRLTG--EFTTDITMAGTSQMLDIQQRDFSPEILQAT--GLSRRLFPRLVEAGEQIGTLQPSAAALLGLPVGIP 233 (470)
T ss_pred HHHHHHHhhcC--ccccchhhccceeeeecccCCCCHHHHHHc--CCCHHHCCCcccccccccccCHHHHHHhCCCCCCe
Confidence 99999999999 999999999999999999999999999999 599999999999999999999987 99999999
Q ss_pred EEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc--c--------cccc----ccchh---HHHHHhHHHHHHHHhC
Q psy224 165 INVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE--M--------GASM----NGGNC---LATFVCTLQNWFKEFG 227 (547)
Q Consensus 165 V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~--~--------~~~~----~gg~~---~~~~~g~~~~w~~~~~ 227 (547)
|++|+||++|+++|+|+.++++++++|||.++.++++ . +... ..+.. .....|.+++|+++.+
T Consensus 234 V~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~ 313 (470)
T PRK10331 234 VISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWLASGVLEWVRKLF 313 (470)
T ss_pred EEEccccHHHHHhCCCCCCCCEEEecchhhhheeecCCCcccccccccccceeccccCceeeechhhHHHHHHHHHHHHh
Confidence 9999999999999999878999999999998865532 1 1000 01111 1233455899999976
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRS 307 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~ 307 (547)
... ...++.+.+. ++++++++++++|+|+|.|+| +|+|+||+..| +++||+||++|||+|++|++++
T Consensus 314 ~~~--~~~y~~l~~~---a~~~~~g~~gl~~~p~~~g~~-----rg~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~~-- 380 (470)
T PRK10331 314 WTA--ETPYQTMIEE---ARAIPPGADGVKMQCDLLACQ-----NAGWQGVTLNT-TRGHFYRAALEGLTAQLKRNLQ-- 380 (470)
T ss_pred ccc--CchHHHHHHH---HhcCCCCCCceEecccccccC-----ceeEECCCCCc-CHHHHHHHHHHHHHHHHHHHHH--
Confidence 421 1233433322 234567889999999999998 79999999997 9999999999999999999999
Q ss_pred hhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 308 VLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 308 ~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.+++. + +++|+++||| +||+.|+|++||++|+||.+....+..+
T Consensus 381 ~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~a 427 (470)
T PRK10331 381 VLEKIGHFKASELLLVGGG-SRNALWNQIKANMLDIPIKVLDDAETTV 427 (470)
T ss_pred HHHHhcCCCCceEEEEccc-ccCHHHHHHHHHhcCCeeEecCcccchH
Confidence 47664 3 6899999998 9999999999999999999888766443
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=1.8e-54 Score=464.81 Aligned_cols=332 Identities=18% Similarity=0.246 Sum_probs=269.2
Q ss_pred CCC-ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH-----------------
Q psy224 1 MSS-QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL----------------- 62 (547)
Q Consensus 1 M~~-~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~----------------- 62 (547)
|+| +|+||||+||||+|++|+|.+|++ +++.+.+|+... +.+|+.||||++||+++
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~g~~-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHDGNI-VSVAQKEFTQIF-----PQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQ 74 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCCCCE-EEEEeeeccccC-----CCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 544 689999999999999999999998 899888886544 47899999999999843
Q ss_pred ------------------------HHHHhhCCchhhhhhceecc----------C-------------------------
Q psy224 63 ------------------------HNCILRLPKDHLKQVKHIES----------T------------------------- 83 (547)
Q Consensus 63 ------------------------~~~i~~~d~r~~~~~~~i~~----------~------------------------- 83 (547)
+++|.|+|.|+.++++.+.. +
T Consensus 75 I~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~ 154 (498)
T PRK00047 75 IAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARE 154 (498)
T ss_pred eeEEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHH
Confidence 34478999998766544321 0
Q ss_pred -------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 -------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 -------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
.+++++|||.|+|||....++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|.|+++
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~t~l~d~~~~~W~~ell~~~--gi~~~~lP~i~~~g~~~G~v~~~- 231 (498)
T PRK00047 155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTNASRTMLFNIHTLDWDDELLELL--DIPRSMLPEVRPSSEVYGKTNPY- 231 (498)
T ss_pred HHhcCCeEEeChHHhHhhhhcCCCeeEeechHHhhhhccccccCccCHHHHHhc--CCCHHHCCCccCCcccccccccc-
Confidence 03468899999999721289999999999999999999999999999 59999999999999999999998
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----cc------cccccc--hhH---HHHHh
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MG------ASMNGG--NCL---ATFVC 217 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~------~~~~gg--~~~---~~~~g 217 (547)
.|+.+||||++|++|++|+++|+|+. +|++++++|||+++.+.. . .+ ...++. +.. ..++|
T Consensus 232 ~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g 311 (498)
T PRK00047 232 GFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAG 311 (498)
T ss_pred ccCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHH
Confidence 88889999999999999999999997 799999999999854332 1 11 111221 111 35678
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHH
Q psy224 218 TLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCE 294 (547)
Q Consensus 218 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~E 294 (547)
.+++|+++.+.....+..++++++ . .+++++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++|
T Consensus 312 ~~l~W~~~~~~~~~~~~~~~~~a~------~-~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlE 383 (498)
T PRK00047 312 SAIQWLRDGLKIISDASDSEALAR------K-VEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGT-TKEHIIRATLE 383 (498)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHh------c-CCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCC-CHHHHHHHHHH
Confidence 899999997642222223333321 2 24678999999999999999875 7999999998 99999999999
Q ss_pred HHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 295 GIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 295 gia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||+|.+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||++...++..+
T Consensus 384 gia~~~r~~~e--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~~~e~~a 441 (498)
T PRK00047 384 SIAYQTRDVLD--AMQADSGIRLKELRVDGGA-VANNFLMQFQADILGVPVERPVVAETTA 441 (498)
T ss_pred HHHHHHHHHHH--HHHHhcCCCCceEEEecCc-ccCHHHHHHHHHhhCCeeEecCcccchH
Confidence 99999999999 4764 35 7899999998 9999999999999999999987766443
No 5
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=3.3e-54 Score=430.32 Aligned_cols=333 Identities=17% Similarity=0.225 Sum_probs=280.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHH----------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS---------------------- 60 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~---------------------- 60 (547)
++|+++||.||||+|+++||.+|++ ++.++.+++..+ |.+||+||||.++|+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~i-va~~q~e~~Q~y-----P~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNI-VAIAQREFTQIY-----PQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCc-hhhhhhhhhhhC-----CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 5899999999999999999999998 999999996655 599999999999998
Q ss_pred -------------------HHHHHHhhCCchhhhhhceeccC--------------------------------------
Q psy224 61 -------------------TLHNCILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 61 -------------------~~~~~i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
+++++|.|+|+|+.+.|+++...
T Consensus 78 IGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae 157 (499)
T COG0554 78 IGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAE 157 (499)
T ss_pred EEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhh
Confidence 46677899999998888777532
Q ss_pred ----CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCC
Q psy224 84 ----NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGI 159 (547)
Q Consensus 84 ----~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl 159 (547)
.+.++.+||.|+|||+..+++|+||||+|+|||+++.+||+++|+.| +||++.||+++++.++.|.+... .+
T Consensus 158 ~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il--~Ip~~~LPev~~ss~~~G~t~~~--~~ 233 (499)
T COG0554 158 KGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELL--GIPRSMLPEVRPSSEIYGVTGIG--FL 233 (499)
T ss_pred cCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHh--CCChHhCcccccccccccccccc--cc
Confidence 04699999999999988999999999999999999999999999999 69999999999999999987663 23
Q ss_pred CCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--ccc-----------ccccchhH-----HHHHhHHH
Q psy224 160 NKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--MGA-----------SMNGGNCL-----ATFVCTLQ 220 (547)
Q Consensus 160 ~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~~~-----------~~~gg~~~-----~~~~g~~~ 220 (547)
...+||..-.||++||.+|.||+ +|++..+.||...+.+++. .-. ..+|...| ...+|.++
T Consensus 234 g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~gk~~YALEGsif~aGaav 313 (499)
T COG0554 234 GAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGKVTYALEGSIFVAGAAV 313 (499)
T ss_pred CCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCCeEEEEEecceeehhhHH
Confidence 46799999999999999999998 8999999999999887742 111 11221112 13478899
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|++|.+.-.+.....+.++. ....++|++|.|.|.|-..|+|++ |.|+||+..+ +++|++||++||||
T Consensus 314 qWLrd~L~~i~~a~~~e~~A~-------~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt-~~~hi~RA~LEsia 385 (499)
T COG0554 314 QWLRDGLGLIDDASDSEELAE-------SVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGT-TKAHIARATLESIA 385 (499)
T ss_pred HHHHHhcCccCchhHHHHHHh-------ccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCC-CHHHHHHHHHHHHH
Confidence 999995433444344444443 234568999999999999999995 8999999998 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhhc
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASYA 356 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~~ 356 (547)
|..|++++. |++ .+ +++++|.||+ ++|+++||++||+++.||.++...|..+.+++
T Consensus 386 yQ~~dv~~a--M~~d~~~~~~~LrvDGG~-s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA 444 (499)
T COG0554 386 YQTRDVLEA--MEKDSGIKLTRLRVDGGA-SRNNFLMQFQADILGVPVERPVVLETTALGAA 444 (499)
T ss_pred HHHHHHHHH--HHHhcCCCceeEEEcCcc-ccchhHHHHHHHHhCCeeeccccchhhHHHHH
Confidence 999999995 554 55 7899999996 99999999999999999999998887765443
No 6
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-53 Score=453.52 Aligned_cols=333 Identities=23% Similarity=0.326 Sum_probs=274.1
Q ss_pred CCCceEEEEEeCCceeEEEEEecC-CCeeecccccccccCCCCcCCCCCCccccCHHHHHHH------------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDAN-TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST------------------ 61 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~-g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~------------------ 61 (547)
|+|+|+||||+|||++|++++|.+ |++ ++..+..++... +.+|+.||||++||++
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~-~~~~~~~~~~~~-----~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~ 74 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEV-VATARFENPVST-----PQPGWAEQDPDELWQAILEALRQLLEESKIDPDA 74 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeE-EEEeeccccccC-----CCCCCcccCHHHHHHHHHHHHHHHHHhcccChhh
Confidence 778999999999999999999999 666 888888886543 5899999999999984
Q ss_pred ----------------------HHHHHhhCCchhhhhhceeccC------------------------------------
Q psy224 62 ----------------------LHNCILRLPKDHLKQVKHIEST------------------------------------ 83 (547)
Q Consensus 62 ----------------------~~~~i~~~d~r~~~~~~~i~~~------------------------------------ 83 (547)
+.++|.|.|.|+..+++.+...
T Consensus 75 I~aI~is~~~~g~vllD~~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~k 154 (502)
T COG1070 75 IAAIGISGQGHGLVLLDANGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDLFAK 154 (502)
T ss_pred ceEEEEeccccceEEECCCCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHHHHh
Confidence 4455788899987666555321
Q ss_pred --CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCC-CCCCCCcccCCccceeecccc---c
Q psy224 84 --NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFP-LHLLPKIQPSGTIVGTLTRDW---L 157 (547)
Q Consensus 84 --~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~-~~~Lp~i~~~~~~~G~v~~~~---~ 157 (547)
.+++++|||.|+||| ++++|+|+||+|+|||+++++|+.++|+.+ +++ .++|||++++++++|+|++++ +
T Consensus 155 ~~~il~~~dyl~~rLTG--~~~~e~s~as~t~l~d~~~~~w~~~~l~~~--gl~~~~~lp~vv~~g~~~G~l~~e~A~~~ 230 (502)
T COG1070 155 AAKILLIKDYLRYRLTG--EFATEISDASGTGLLDIRTRKWDWELLAAL--GLPERDLLPPVVEPGEVLGTLTPEAAEEL 230 (502)
T ss_pred hhheechHHHHHHHHhC--CcccccccccccccccccccccCHHHHHHc--CCChHHhCCCccCccceeccccHHHHHHh
Confidence 158999999999999 999999999999999999999999999999 588 499999999999999999997 9
Q ss_pred CCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccccc-----cchhH----HHHHhHHHH
Q psy224 158 GINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGASMN-----GGNCL----ATFVCTLQN 221 (547)
Q Consensus 158 Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~~~-----gg~~~----~~~~g~~~~ 221 (547)
||+.++||++|+||++++++|+|.. ++++..++||+.++....+ .+...+ .+..+ ..+++.+++
T Consensus 231 Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (502)
T COG1070 231 GLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLE 310 (502)
T ss_pred CCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccceeeecccCCCeEEEEEEecccHHHHH
Confidence 9999999999999999999999998 7889999999998764432 111111 11111 244667889
Q ss_pred HHHHhCCCCc-hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 222 WFKEFGFNVP-QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 222 w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
|+++.+.... ..+...+.. ....+.++.++.|+||+.|||.|.+++ +.|.|++..+ +++|++||++||++
T Consensus 311 w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~-~~~~l~ravlEgva 384 (502)
T COG1070 311 WLRELFGLAESYPELLEEAL-----AVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPH-TRAHLARAVLEGVA 384 (502)
T ss_pred HHHHHhccccCcHHHHHHHH-----hccCCCCCCCcEEeccccCCcCCCCCccceeEEEcccccc-CHHHHHHHHHHHHH
Confidence 9999865431 112222211 112335778999999999999999986 6999999997 99999999999999
Q ss_pred HHHHHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 298 NNIHDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 298 ~~~~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|.++..++ .+++. + +++|+++||| +||+.|+|++||++|+||.++...|..+
T Consensus 385 ~~l~~~~~--~l~~~~g~~~~~i~~~GGg-ars~~w~Qi~Ad~~g~~v~~~~~~e~~a 439 (502)
T COG1070 385 FALADGLE--ALEELGGKPPSRVRVVGGG-ARSPLWLQILADALGLPVVVPEVEEAGA 439 (502)
T ss_pred HHHHHHHH--HHHHhcCCCccEEEEECCc-ccCHHHHHHHHHHcCCeeEecCcccchH
Confidence 99999999 57775 4 6789999998 9999999999999999999987665543
No 7
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=457.12 Aligned_cols=331 Identities=19% Similarity=0.283 Sum_probs=269.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH-------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH------------------- 63 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~------------------- 63 (547)
|+++||||+||||+|++|+|.+|++ ++..+.+++... +.+|+.||||++||++++
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G~~-v~~~~~~~~~~~-----~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I 74 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKGNV-VSSHQIPHEQIT-----PHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKI 74 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCCCE-EEEEEEeecccC-----CCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCce
Confidence 4499999999999999999999998 899988886533 478999999999998432
Q ss_pred ------------------------HHHhhCCchhhhhhceecc-----------C-------------------------
Q psy224 64 ------------------------NCILRLPKDHLKQVKHIES-----------T------------------------- 83 (547)
Q Consensus 64 ------------------------~~i~~~d~r~~~~~~~i~~-----------~------------------------- 83 (547)
++|.|+|+|+.++++++.. +
T Consensus 75 ~aIgis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~ 154 (504)
T PTZ00294 75 KAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKD 154 (504)
T ss_pred EEEEeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHHHH
Confidence 3356788887665443210 0
Q ss_pred ---C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 ---N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 ---~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
. +++++|||.|+|||..++++|+|+||+|++||+++++|++++++.+ ||++++||+++++++++|+|+++.
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~--gi~~~~LP~v~~~~~~~G~l~~~~ 232 (504)
T PTZ00294 155 AVKEGTLLFGTIDTWLIWNLTGGKSHVTDVTNASRTFLMNIKTLKWDEELLNKF--GIPKETLPEIKSSSENFGTISGEA 232 (504)
T ss_pred hhhcCCeEEEcHHHHHHHHhcCCceEEEEhhhhHHhhccCcccCccCHHHHHHh--CCCHHHCCCccCCccccCccchhh
Confidence 1 3568999999999865689999999999999999999999999999 599999999999999999999888
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhh-h-cc-----cccc------c-cc---chhH---HHH
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAF-I-DE-----MGAS------M-NG---GNCL---ATF 215 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~-~-~~-----~~~~------~-~g---g~~~---~~~ 215 (547)
+|+++|+||++|++|++|+++|+|+. +|++.+++|||+++.+ + +. .+.. . ++ .+.+ ..+
T Consensus 233 ~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (504)
T PTZ00294 233 VPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAV 312 (504)
T ss_pred cCCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhh
Confidence 99999999999999999999999997 8999999999988532 2 11 1110 0 11 1111 345
Q ss_pred HhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHH
Q psy224 216 VCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVAL 292 (547)
Q Consensus 216 ~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~ 292 (547)
+|.+++|+++.+.....+..+++++ +++ +++++++|+|||.|+|.|++++ |.|+|++..| +++||+||+
T Consensus 313 ~g~~~~W~~~~~~~~~~~~~~~~~a------~~~-~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~i~rAv 384 (504)
T PTZ00294 313 AGAGVEWLRDNMGLISHPSEIEKLA------RSV-KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKT-TRAHIVRAA 384 (504)
T ss_pred hHHHHHHHHHHhCCCCCHHHHHHHH------HhC-CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCC-CHHHHHHHH
Confidence 7889999999753222223333333 223 3778999999999999999875 8999999998 999999999
Q ss_pred HHHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 293 CEGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 293 ~Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|||+|.+|++++ .+++ .| +++|+++||+ +||+.|+|++||++|+||.+...++..+
T Consensus 385 lEgia~~~r~~~~--~l~~~~g~~~~~i~~~GG~-a~s~~w~Qi~Adv~g~pV~~~~~~e~~a 444 (504)
T PTZ00294 385 LEAIALQTNDVIE--SMEKDAGIELNSLRVDGGL-TKNKLLMQFQADILGKDIVVPEMAETTA 444 (504)
T ss_pred HHHHHHHHHHHHH--HHHHhhCCCcceEEEeccc-ccCHHHHHHHHHHhCCceEecCcccchH
Confidence 9999999999999 4765 45 6799999998 9999999999999999999988776544
No 8
>PLN02295 glycerol kinase
Probab=100.00 E-value=2.1e-53 Score=457.31 Aligned_cols=330 Identities=18% Similarity=0.243 Sum_probs=264.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHH---------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH--------------------- 63 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~--------------------- 63 (547)
|+||||+|||++|++|+|.+|++ +++++.+|+... +.+|+.||||++||++++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~-~~~~~~~~~~~~-----~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i 74 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARP-VASHQVEFTQIY-----PQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGL 74 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCE-EEEEeecccccC-----CCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccce
Confidence 68999999999999999999998 999998886544 579999999999997433
Q ss_pred ------------------------HHHhhCCchhhhhhceecc------------C------------------------
Q psy224 64 ------------------------NCILRLPKDHLKQVKHIES------------T------------------------ 83 (547)
Q Consensus 64 ------------------------~~i~~~d~r~~~~~~~i~~------------~------------------------ 83 (547)
++|.|+|.|+.++++.+.. +
T Consensus 75 ~aIg~s~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~ 154 (512)
T PLN02295 75 KAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVK 154 (512)
T ss_pred EEEEEecCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHH
Confidence 3356889998655433210 0
Q ss_pred --------CCcchhhHHHHHHhCCC---CCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceee
Q psy224 84 --------NDLSFQDFIVAMLCDLQ---EPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTL 152 (547)
Q Consensus 84 --------~~l~~~d~l~~~LtG~~---~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v 152 (547)
.+++++|||.|+|||.. ++++|+|+||+|+|||+++++||+++++.+ +|++++|||++++++++|+|
T Consensus 155 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~--gi~~~~lP~l~~~~~~~G~v 232 (512)
T PLN02295 155 EAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEAL--GIPAEILPKIVSNSEVIGTI 232 (512)
T ss_pred HhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHc--CCCHHHCCCcccCccceecc
Confidence 14678999999999932 469999999999999999999999999999 59999999999999999999
Q ss_pred cccccCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhc-c------ccc------cc----ccchhH---
Q psy224 153 TRDWLGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFID-E------MGA------SM----NGGNCL--- 212 (547)
Q Consensus 153 ~~~~~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~-~------~~~------~~----~gg~~~--- 212 (547)
++++.. .|+||++|++|++|+++|+|+.+|++.+++|||.++.+.. . .+. .. ++.+.+
T Consensus 233 ~~~~a~--~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (512)
T PLN02295 233 AKGWPL--AGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGS 310 (512)
T ss_pred cccccc--CCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEech
Confidence 987522 4999999999999999999996689999999998854321 1 111 01 222222
Q ss_pred HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHH
Q psy224 213 ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLF 289 (547)
Q Consensus 213 ~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ 289 (547)
..++|.+++|+++.+.....++.+++++. +. +++++++|+|||.|+|.|+|++ |.|+||+..| +++||+
T Consensus 311 ~~~~G~~~~W~~~~~~~~~~~~~~~~~a~------~~-~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~l~ 382 (512)
T PLN02295 311 VAIAGAAVQWLRDNLGIIKSASEIEALAA------TV-DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFT-NKAHIA 382 (512)
T ss_pred hhhhHHHHHHHHHHcCCCCCHHHHHHHHH------hC-CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCC-CHHHHH
Confidence 35678899999997642222223333321 23 3677899999999999999985 8999999997 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc--------CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhh
Q psy224 290 VALCEGIINNIHDIMNRSVLHRS--------GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASY 355 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~--------g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~ 355 (547)
||++||++|.+|++++. +++. .+++|+++||| +||++|+|++||++|+||.+....+..+.++
T Consensus 383 RAvlEgia~~~r~~l~~--l~~~~~~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADv~g~pV~~~~~~e~~alGa 453 (512)
T PLN02295 383 RAVLESMCFQVKDVLDA--MRKDAGEEKSHKGLFLLRVDGGA-TANNLLMQIQADLLGSPVVRPADIETTALGA 453 (512)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhhcccccCCCcceEEEeccc-hhCHHHHHHHHHhcCCceEecCccccHHHHH
Confidence 99999999999999994 6543 26789999998 9999999999999999999888766544333
No 9
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=2e-52 Score=444.79 Aligned_cols=328 Identities=16% Similarity=0.235 Sum_probs=263.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH----------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL---------------------- 62 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~---------------------- 62 (547)
++||||+||||+|++|+|.+|++ ++..+.+++... ..+.+|+.||||++||+++
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~-va~~~~~~~~~~---~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~~s 77 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKI-VASASTPNATKQ---AIENNDYHIWDLEAIWQKLADCCQQINSELTEKHIRGIAVT 77 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCE-EEEEecccccCC---CCCCCCceeeCHHHHHHHHHHHHHHHHhhcChhceEEEEEe
Confidence 68999999999999999999998 888888765321 2357899999999999844
Q ss_pred ----------------HHHHhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 63 ----------------HNCILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 63 ----------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
+++|.|.|+|+.++++.+... .++++
T Consensus 78 ~~~~~~v~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~ 157 (465)
T TIGR02628 78 TFGVDGAPFDKQGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERMHKFVFI 157 (465)
T ss_pred ccccceEEECCCCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHHHHHhhCc
Confidence 344678899987665444210 15789
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeE
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPI 165 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V 165 (547)
+|||.|+||| +..+|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++|+||
T Consensus 158 ~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~w~~ell~~~--gi~~~~lP~l~~~~~~~G~v~~~~a~~~Gl~~g~pV 233 (465)
T TIGR02628 158 SSMITHRLTG--EFTTDITMAGTSMMTDLTQRNWSPQILQAL--GLSRRLFPPLVEAGEQIGTLQNSAAAMLGLPVGVPV 233 (465)
T ss_pred HHHHHHHHhC--CcccchhhhhcceeeecCcCCCCHHHHHHc--CCCHHHCCCcccCCccceeeCHHHHHHhCCCCCCCE
Confidence 9999999999 999999999999999999999999999999 599999999999999999999887 999999999
Q ss_pred EecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------cc----cc-----cccchh--HHHHHhHHHHHHHHhCC
Q psy224 166 NVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MG----AS-----MNGGNC--LATFVCTLQNWFKEFGF 228 (547)
Q Consensus 166 ~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~----~~-----~~gg~~--~~~~~g~~~~w~~~~~~ 228 (547)
++|+||++++++|+|+.++++++++|||.++.+..+ .+ .. ..+.+. ..+..|.+++|+++.++
T Consensus 234 ~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~W~~~~~~ 313 (465)
T TIGR02628 234 ISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASGVLEWVRKLFF 313 (465)
T ss_pred EecCccHHHHHhccCCCCCcEEEeccchhhheeccCcCCCCccccccccccccccCCceeeehhhhhhhhHHHHHHHHhc
Confidence 999999999999999878899999999998765532 01 00 011111 12344558999999753
Q ss_pred CC--chhHHHHHHHhccCcccccccCCCCeE-EecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy224 229 NV--PQNQIWAKLINASDPINHITRHHSTLR-VTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMN 305 (547)
Q Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~ 305 (547)
.. ...+.++++.+. ++++++++++++ |.|++. | ..+|+|+|++.+| +++||+||++||++|.+|++++
T Consensus 314 ~~~~~~~~~~~~l~~~---a~~~~~g~~gl~~~~p~~~----~-~a~g~~~Gl~~~~-~~~~l~rAvlEgia~~~r~~~e 384 (465)
T TIGR02628 314 TAETPSDHYYQMMIEE---ARLIANGADGVVNFQCDLL----S-CGQGGIQGLTLNT-TRGHIYRAALEGLTAQLKRNLQ 384 (465)
T ss_pred chhhccccHHHHHHHH---HHhCCCCCCcceeecccCC----c-ccceeEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 21 101123443322 335667888998 999875 3 2359999999997 9999999999999999999999
Q ss_pred hhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 306 RSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 306 ~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.+++. + +++|+++||| +||+.|+|++||++++||.+...++..+
T Consensus 385 --~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~Adv~g~pV~~~~~~e~~~ 431 (465)
T TIGR02628 385 --MLEQIGQFKASELLLVGGG-SKNTLWNQIRANMLDIPVKVVDDAETTV 431 (465)
T ss_pred --HHHHhcCCCcceEEEecCc-cCCHHHHHHhhhhcCCeeEeccCCcchH
Confidence 47764 3 6899999998 9999999999999999999988766443
No 10
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=4e-52 Score=446.02 Aligned_cols=330 Identities=17% Similarity=0.251 Sum_probs=268.0
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHH---------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL--------------------- 62 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~--------------------- 62 (547)
+|+||||+|||++|++|+|.+|++ ++..+.+++... +.+|+.|||+++||+.+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~-l~~~~~~~~~~~-----~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aI 74 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNI-VAIHQKEFTQIF-----PKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAI 74 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCE-EEEEeeeccccC-----CCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEE
Confidence 489999999999999999999998 899988886544 47899999999999843
Q ss_pred --------------------HHHHhhCCchhhhhhceeccC---------------------------------------
Q psy224 63 --------------------HNCILRLPKDHLKQVKHIEST--------------------------------------- 83 (547)
Q Consensus 63 --------------------~~~i~~~d~r~~~~~~~i~~~--------------------------------------- 83 (547)
+++|.|.|+|+.++++.+...
T Consensus 75 gis~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~~ 154 (493)
T TIGR01311 75 GITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAER 154 (493)
T ss_pred EEecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhhc
Confidence 344678899987665443210
Q ss_pred ---CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCC
Q psy224 84 ---NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGIN 160 (547)
Q Consensus 84 ---~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~ 160 (547)
.+++++|||.|+|||.++.++|+|+||+|+|||+++++|++++++.+ ++++++||+++++++++|+++++ |+.
T Consensus 155 ~~~~~~~~~dyl~~~LtG~~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~--gi~~~~lP~l~~~g~~~G~v~~~--~l~ 230 (493)
T TIGR01311 155 GELLFGTIDTWLIWNLTGGKVHVTDVTNASRTMLFNIHTLDWDDELLELF--GIPREILPEVRSSSEVYGYTDPG--LLG 230 (493)
T ss_pred CCeEEECHhHhhhhhccCCceEEeccchhhhhhcccccccccCHHHHHHc--CCCHHHCCCccCCccceeccccc--ccC
Confidence 03468999999999954688999999999999999999999999999 59999999999999999999998 787
Q ss_pred CCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhh-c------cccc------ccccc--hhH----HHHHhHHH
Q psy224 161 KDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFI-D------EMGA------SMNGG--NCL----ATFVCTLQ 220 (547)
Q Consensus 161 ~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~-~------~~~~------~~~gg--~~~----~~~~g~~~ 220 (547)
+|+||++|++|++|+++|+|+. +|++++++|||.++.+. . +.+. ...+. .++ ...+|.++
T Consensus 231 ~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 310 (493)
T TIGR01311 231 AEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAV 310 (493)
T ss_pred CCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHH
Confidence 9999999999999999999997 79999999999885432 1 1110 11110 011 24578899
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|+++.+.....++..++++. + .+++++++|+|||.|+|+|++++ |+|+|++..| +++||+||++|||+
T Consensus 311 ~W~~~~~~~~~~~~~~~~~a~------~-~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~-~~~~l~rAvlEgia 382 (493)
T TIGR01311 311 QWLRDNLKLIKHAAESEALAR------S-VEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGT-TKAHIARAALEAIA 382 (493)
T ss_pred HHHHHHhCCCCCHHHHHHHHh------c-CCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCC-CHHHHHHHHHHHHH
Confidence 999997643222233333321 2 24778999999999999999875 7999999998 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhh
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDAS 354 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~ 354 (547)
|.+|.+++ .+++ .| +++|+++||| +||+.|+|++||++|+||.+...++..+.+
T Consensus 383 ~~~~~~~~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv~g~pv~~~~~~e~~alG 439 (493)
T TIGR01311 383 FQTRDVLE--AMEKDAGVEITKLRVDGGM-TNNNLLMQFQADILGVPVVRPKVTETTALG 439 (493)
T ss_pred HHHHHHHH--HHHHhcCCCCceEEEeccc-ccCHHHHHHHHHhcCCeeEecCCCcchHHH
Confidence 99999999 4664 35 6899999998 999999999999999999998776654433
No 11
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=4.3e-52 Score=448.28 Aligned_cols=334 Identities=17% Similarity=0.230 Sum_probs=264.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCI---------------- 66 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i---------------- 66 (547)
|+|+||||+||||+|++++|.+|++ ++..+.+|+... ..+.+|+.||||++||+++..++
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~-l~~~~~~~~~~~---~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~a 77 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQ-IAVGQAEWRHLA---VPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAA 77 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCE-EEEEeccccccC---CCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 5699999999999999999999998 888888875332 12468999999999998766552
Q ss_pred -----------------------hhCCchhhhhhceecc------------C---------------------------C
Q psy224 67 -----------------------LRLPKDHLKQVKHIES------------T---------------------------N 84 (547)
Q Consensus 67 -----------------------~~~d~r~~~~~~~i~~------------~---------------------------~ 84 (547)
.|.|.|+.++++++.. + .
T Consensus 78 I~~s~~~~~~v~~D~~g~pl~~~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 157 (520)
T PRK10939 78 VSATSMREGIVLYDRNGTEIWACANVDARASREVSELKELHNNFEEEVYRCSGQTLALGALPRLLWLAHHRPDIYRQAHT 157 (520)
T ss_pred EEEECCcccEEEECCCCCEeeCCcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcCCcchHHHHHHHHHcCcHHHHHhhe
Confidence 2348887766544310 0 1
Q ss_pred CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCC
Q psy224 85 DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINK 161 (547)
Q Consensus 85 ~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~ 161 (547)
+++++|||.|+||| ++++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|+|++++ +||++
T Consensus 158 ~~~~~dyl~~~LTG--~~~~d~s~As~tgl~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~g~~~G~v~~~~A~~~GL~~ 233 (520)
T PRK10939 158 ITMISDWIAYMLSG--ELAVDPSNAGTTGLLDLVTRDWDPALLEMA--GLRADILPPVKETGTVLGHVTAKAAAETGLRA 233 (520)
T ss_pred EechhHhhhheeeC--ceeeEhhhhhceeeeecCCCCCCHHHHHHc--CCCHHHCCCCccCCceeeeecHHHHHhhCCCC
Confidence 57899999999999 999999999999999999999999999999 599999999999999999999887 99999
Q ss_pred CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc------cccchhH---HHHHhHHHHHHHH
Q psy224 162 DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS------MNGGNCL---ATFVCTLQNWFKE 225 (547)
Q Consensus 162 g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~------~~gg~~~---~~~~g~~~~w~~~ 225 (547)
|+||++|++|++|+++|+|+. +|++++++|||.++.++.+ .... .++.+.+ ..++|.+++||++
T Consensus 234 g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~ 313 (520)
T PRK10939 234 GTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRD 313 (520)
T ss_pred CCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccceeceeeeCCcceEeeeeccceeeeehHHh
Confidence 999999999999999999997 8999999999998654321 1110 1111111 2346778899999
Q ss_pred hCCCCch-------hHHHHHHHhccCcccccccCCCCeEEecCccCcccC-CCC--CceEEecccCC--CCHHHHHHHHH
Q psy224 226 FGFNVPQ-------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHV-IAE--SASVTHITIQN--LGVTKLFVALC 293 (547)
Q Consensus 226 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p-~~~--~~~~~gl~~~~--~~~~~l~ra~~ 293 (547)
.+..... ...++.+.+. +++.+++++++ +|||.|+|.| .|+ +|.|+|++.+| ++++||+||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~---a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvl 388 (520)
T PRK10939 314 AFCAEEKLLAERLGIDAYSLLEEM---ASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALE 388 (520)
T ss_pred hhchHHHHHHHhcCCCHHHHHHHH---HhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHH
Confidence 7532110 0123333221 23456677776 5999999874 444 38999999874 37999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|||+|.+|++++ .+++ .| +++|+++||| +||+.|+|++||++|+||.+.+..+..+
T Consensus 389 Egia~~~~~~l~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~~~e~~a 447 (520)
T PRK10939 389 ENAAIVSACNLQ--QIAAFSGVFPSSLVFAGGG-SKGKLWSQILADVTGLPVKVPVVKEATA 447 (520)
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCcEEEEeCCc-ccCHHHHHHHHHhcCCeeEEecccCchH
Confidence 999999999999 4665 35 6899999998 9999999999999999999988776544
No 12
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=5.3e-52 Score=450.71 Aligned_cols=344 Identities=18% Similarity=0.238 Sum_probs=271.9
Q ss_pred CceEEEEEeCCceeEEEEEec-CCCeeecccccccccCCCC-cCCCCCCccccCHHHHHHH-------------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQANIPS-AHDSNPGAHEQNVRKIVST------------------- 61 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~~~p~-~~~~~~g~~e~d~~~~~~~------------------- 61 (547)
|+|+||||+||||+|++|+|. +|++ +++++.+|+..... ...+.+|+.||||++||++
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I 80 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEE-LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAV 80 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcE-eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 469999999999999999995 9998 89988888642100 1236889999999999973
Q ss_pred ---------------------HH-----------HHHhhCCchhhhhhceecc------------C--------------
Q psy224 62 ---------------------LH-----------NCILRLPKDHLKQVKHIES------------T-------------- 83 (547)
Q Consensus 62 ---------------------~~-----------~~i~~~d~r~~~~~~~i~~------------~-------------- 83 (547)
++ ++|.|+|.|+.++++.+.. .
T Consensus 81 ~aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl 160 (548)
T PRK04123 81 VGIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKI 160 (548)
T ss_pred EEEEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHH
Confidence 44 5677899998665533210 0
Q ss_pred ---------------CCcchhhHHHHHHhCCC---CCcccccccccccccccc-CCCccHHHHHhcCCC----CCCCCCC
Q psy224 84 ---------------NDLSFQDFIVAMLCDLQ---EPVMSNQNAASWGYFNCK-LSTWNEQILRNHEPS----FPLHLLP 140 (547)
Q Consensus 84 ---------------~~l~~~d~l~~~LtG~~---~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g~~----i~~~~Lp 140 (547)
.+++++|||.|+|||.. ...+|.++|+.+++||.+ ++.||+++++.+|+. +++++||
T Consensus 161 ~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP 240 (548)
T PRK04123 161 LHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKLFT 240 (548)
T ss_pred HHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhcCC
Confidence 15789999999999932 345789999999999999 666699999998422 7789999
Q ss_pred CcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhccc-----cc-------c
Q psy224 141 KIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEM-----GA-------S 205 (547)
Q Consensus 141 ~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~~-----~~-------~ 205 (547)
+++++++++|+|++++ +||++|+||++|+||++|+++|+|+.+|++++++|||.++.++.+. +. .
T Consensus 241 ~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
T PRK04123 241 ETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLADKQRAVPGICGQVDGSI 320 (548)
T ss_pred ccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecCCccccCceeecccCcc
Confidence 9999999999999987 9999999999999999999999999668999999999987655321 10 0
Q ss_pred cccchhH---HHHHhHHHHHHHHhCCCCch--------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC--
Q psy224 206 MNGGNCL---ATFVCTLQNWFKEFGFNVPQ--------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES-- 272 (547)
Q Consensus 206 ~~gg~~~---~~~~g~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~-- 272 (547)
.++.+.+ .+++|.+++||++.+..... ...++.+.+. +++.++++++++|+|||.|+|.|++++
T Consensus 321 ~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~---a~~~~~g~~gl~f~P~l~Ger~P~~~~~a 397 (548)
T PRK04123 321 VPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEA---AAKQPPGEHGLVALDWFNGRRTPLADQRL 397 (548)
T ss_pred cCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHH---HHhcCCCCCceEEcccccCCCCCCCCCCC
Confidence 1111111 25578899999997632110 0123333221 335677899999999999999999985
Q ss_pred -ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 273 -ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 273 -~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
|.|+|++..| +++||+||++||++|.+|++++ .+++.+ +++|+++|||.+||++|+|++||++|+||.+....+
T Consensus 398 rg~~~Gl~~~~-~~~~l~RAvlEgia~~~~~~~e--~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e 474 (548)
T PRK04123 398 KGVITGLTLGT-DAPDIYRALIEATAFGTRAIME--CFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQ 474 (548)
T ss_pred ceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccc
Confidence 7999999998 9999999999999999999999 476655 689999999647999999999999999999888776
Q ss_pred hhhh
Q psy224 350 MRDA 353 (547)
Q Consensus 350 ~~~a 353 (547)
..+.
T Consensus 475 ~~al 478 (548)
T PRK04123 475 CPAL 478 (548)
T ss_pred cchH
Confidence 5443
No 13
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.6e-52 Score=450.99 Aligned_cols=334 Identities=19% Similarity=0.240 Sum_probs=265.5
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHH------------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS------------------------ 60 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~------------------------ 60 (547)
++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i-~~~~~~~~~~~~-----~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Ig 74 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDI-LALAAQNIKTWT-----PSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIG 74 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCE-EEEEEeeeeecc-----CCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEE
Confidence 47999999999999999999998 898888886544 578999999999997
Q ss_pred ---------------HH---------HHHHhhCCchhhhhhceeccC---------------------------------
Q psy224 61 ---------------TL---------HNCILRLPKDHLKQVKHIEST--------------------------------- 83 (547)
Q Consensus 61 ---------------~~---------~~~i~~~d~r~~~~~~~i~~~--------------------------------- 83 (547)
++ +++|.|+|.|+.++++.+...
T Consensus 75 is~~~s~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~ 154 (541)
T TIGR01315 75 FDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELF 154 (541)
T ss_pred ecccccceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHH
Confidence 24 567789999988776555320
Q ss_pred ---CCcchhhHHHHHHhCCCCCcccccccccccccc---ccCCCccHHHHHhcCCCCCC---CCC----CCcccCCccce
Q psy224 84 ---NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFN---CKLSTWNEQILRNHEPSFPL---HLL----PKIQPSGTIVG 150 (547)
Q Consensus 84 ---~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~g~~i~~---~~L----p~i~~~~~~~G 150 (547)
.+++++|||.|+||| +.++|+++|+.+++|| +++++||+++++.+| |+. ++| |+++++++++|
T Consensus 155 ~~~~~l~~~dyl~~~LTG--~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~G--i~~~~~~~l~~~lp~i~~~~~~~G 230 (541)
T TIGR01315 155 ARCKFFDLTDFLTWRATG--KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIG--LGELVTDNFIRMGGSWMSPGELVG 230 (541)
T ss_pred Hhhhhcchhhhheeeeec--chhHhHhHHhHhhhccccccccCCCCHHHHHHcC--ChhhhhccccccCCcccCCCcccc
Confidence 158999999999999 9999999999999988 699999999999995 763 234 99999999999
Q ss_pred e-ecccc---cCCCCCCeEEecCCchhhhhhcccc---c-CC-------CcEEEeccchhhhhhcc-----ccc------
Q psy224 151 T-LTRDW---LGINKDTPINVALGDLQCSVLATLQ---Y-HS-------DAIVNISTSAQIAFIDE-----MGA------ 204 (547)
Q Consensus 151 ~-v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~---~-~~-------~~~is~GTs~~~~~~~~-----~~~------ 204 (547)
+ |++++ +||++|+||++|++|++|+++|+|. . +| ++.+++|||+++..+.+ .+.
T Consensus 231 ~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
T TIGR01315 231 GGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRD 310 (541)
T ss_pred cccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecCCCccCCceeecccC
Confidence 9 99886 9999999999999999999999964 4 45 78899999988765422 111
Q ss_pred -ccccchhH---HHHHhHHHHHHHHhCCCCch---------hHHHHHHHhccC-ccccccc-----CCCCeEEecCccCc
Q psy224 205 -SMNGGNCL---ATFVCTLQNWFKEFGFNVPQ---------NQIWAKLINASD-PINHITR-----HHSTLRVTPTLLGD 265 (547)
Q Consensus 205 -~~~gg~~~---~~~~g~~~~w~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~P~~~G~ 265 (547)
..++.+.+ ..++|.+++|+++.+....+ ...++.+.+..+ ..++.++ +++|++|+|||.|+
T Consensus 311 ~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~ 390 (541)
T TIGR01315 311 ALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGN 390 (541)
T ss_pred ccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccC
Confidence 11222111 35678999999997421100 012222211111 1112232 35899999999999
Q ss_pred ccCCCCC---ceEEecccCCCCH---HHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHH
Q psy224 266 RHVIAES---ASVTHITIQNLGV---TKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERI 337 (547)
Q Consensus 266 r~p~~~~---~~~~gl~~~~~~~---~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~ 337 (547)
|+|+|++ |.|+||+..| ++ .||+||++|||+|.+|++++ .+++.| +++|+++||+ +||+.|+|++||+
T Consensus 391 r~P~~dp~arG~~~Gl~~~~-~~~~~~~~~rAvlEgiaf~~r~~~e--~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv 466 (541)
T TIGR01315 391 RSPIADPNMRGVIIGLSMDR-SKDGLALLYYATMEFIAYGTRQIVE--AMNTAGHTIKSIFMSGGQ-CQNPLLMQLIADA 466 (541)
T ss_pred cCCCCCCCCceEEECCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCccEEEEecCc-ccCHHHHHHHHHH
Confidence 9999986 8999999997 88 89999999999999999999 577655 7899999998 9999999999999
Q ss_pred hCCceEEecchhhhh
Q psy224 338 YGLQLIVEQDQAMRD 352 (547)
Q Consensus 338 l~~~v~~~~~~~~~~ 352 (547)
+++||.+....+..+
T Consensus 467 lg~pV~~~~~~e~~a 481 (541)
T TIGR01315 467 CDMPVLIPYVNEAVL 481 (541)
T ss_pred HCCeeEecChhHHHH
Confidence 999999998777544
No 14
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=4.9e-51 Score=438.12 Aligned_cols=326 Identities=22% Similarity=0.344 Sum_probs=267.7
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------------
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------------- 65 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------------- 65 (547)
||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.+||+++||+.+..+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs 74 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEV-IASGSAPHTVIS-----PHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGIS 74 (481)
T ss_pred CceeecCcceEEEEECCCCCE-EEEEeecccccC-----CCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence 689999999999999999998 999988886533 47899999999999854433
Q ss_pred -------------------HhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 66 -------------------ILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 66 -------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
+.|.|.|..++.+.+... .++++
T Consensus 75 ~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 154 (481)
T TIGR01312 75 GQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLP 154 (481)
T ss_pred cCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhheeeCc
Confidence 457777763332222110 15788
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeE
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPI 165 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V 165 (547)
+|||.|+||| +.++|+|+||+|||||+++++|++++++.+ ++++++||+++++++++|++++++ +||++|+||
T Consensus 155 ~~yi~~~LtG--~~~~d~t~as~tgl~d~~~~~W~~~~l~~~--gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~g~pV 230 (481)
T TIGR01312 155 KDYLRYRLTG--EYVTEYSDASGTGWFDVAKRAWSKELLDAL--DLPESQLPELIESSEKAGTVRPEVAARLGLSAGVPV 230 (481)
T ss_pred hHHHhhhhcC--CeeeeHHHhhcccccccCCCCCCHHHHHHh--CCCHHHCCCccCCCCeeeeEcHHHHHHhCCCCCCeE
Confidence 9999999999 899999999999999999999999999999 599999999999999999999886 999999999
Q ss_pred EecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------ccc------ccccchhH---HHHHhHHHHHHHHhCCC
Q psy224 166 NVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGA------SMNGGNCL---ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 166 ~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~------~~~gg~~~---~~~~g~~~~w~~~~~~~ 229 (547)
++|+||++|+++|+|+. ++++++++|||+++...++ .+. ..++.+.. ..++|.+++|+++.+..
T Consensus 231 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~ 310 (481)
T TIGR01312 231 AAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK 310 (481)
T ss_pred EecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC
Confidence 99999999999999986 8999999999998865532 110 11122211 35678899999997632
Q ss_pred CchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy224 230 VPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNR 306 (547)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~ 306 (547)
.+++.+++++ +++++++++++|+||+.|+|.|++++ |+|+|++..| +++|++||++||++|.+|++++
T Consensus 311 -~~~~~l~~~~------~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~-~~~~l~railEgia~~~~~~~~- 381 (481)
T TIGR01312 311 -EDVEALNELA------EQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNT-TRADLTRAVLEGVTFALRDSLD- 381 (481)
T ss_pred -CcHHHHHHHH------hcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233333332 34566888999999999999999964 7999999987 9999999999999999999999
Q ss_pred hhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 307 SVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 307 ~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
.+++. + +++|+++||+ +||+.|+|++||++|+||.+.+.++..+.
T Consensus 382 -~l~~~~~~~~~~i~~~GG~-s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~ 429 (481)
T TIGR01312 382 -ILREAGGIPIQSIRLIGGG-AKSPAWRQMLADIFGTPVDVPEGEEGPAL 429 (481)
T ss_pred -HHHHhcCCCcceEEEeccc-cCCHHHHHHHHHHhCCceeecCCCcchHH
Confidence 47663 3 6899999998 99999999999999999999887665443
No 15
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=4e-51 Score=441.99 Aligned_cols=339 Identities=17% Similarity=0.222 Sum_probs=269.5
Q ss_pred eEEEEEeCCceeEEEEEe-cCCCeeeccccccccc-----CCCCc-CCCCCCccccCHHHHHHH----------------
Q psy224 5 VVLGIDIGTTSVKVCLID-ANTREELSSESKDTQA-----NIPSA-HDSNPGAHEQNVRKIVST---------------- 61 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~-----~~p~~-~~~~~g~~e~d~~~~~~~---------------- 61 (547)
|+||||+||||+|++||| .+|++ ++.++.+|+. ..|.- ....+|+.||||++||++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~-~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~ 80 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEE-IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDP 80 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcE-eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 799999999999999999 89998 8999888863 22210 111389999999999972
Q ss_pred ------------------------HHH-----------HHhhCCchhhhhhceecc------------C-----------
Q psy224 62 ------------------------LHN-----------CILRLPKDHLKQVKHIES------------T----------- 83 (547)
Q Consensus 62 ------------------------~~~-----------~i~~~d~r~~~~~~~i~~------------~----------- 83 (547)
+++ +|.|+|+|+.++++.+.. +
T Consensus 81 ~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~ 160 (536)
T TIGR01234 81 ADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWA 160 (536)
T ss_pred HHEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHH
Confidence 442 777999998877654421 0
Q ss_pred -----------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCC----CCCCCCCCc
Q psy224 84 -----------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPS----FPLHLLPKI 142 (547)
Q Consensus 84 -----------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~----i~~~~Lp~i 142 (547)
.+++++|||.|+||| +.++|+++|+.++++|..-+.|++++++.+|+. +++++||++
T Consensus 161 kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG--~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i 238 (536)
T TIGR01234 161 KILQITEEDPAIYQAADRWIELADWIVAQLSG--DIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTDI 238 (536)
T ss_pred HHHHHHhhChHHHHHHhhhcCHHHHHHHHHhC--CccccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCce
Confidence 157999999999999 999999999999988765555599999999531 478999999
Q ss_pred ccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-----cc--c-----cc
Q psy224 143 QPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-----MG--A-----SM 206 (547)
Q Consensus 143 ~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-----~~--~-----~~ 206 (547)
+++++++|+|++++ +||++|+||++|+||++|+++|+|+. +|++++++|||.++.++.+ .+ . ..
T Consensus 239 ~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (536)
T TIGR01234 239 WTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIV 318 (536)
T ss_pred ecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecCccccCCceeeeccCccc
Confidence 99999999999886 99999999999999999999999987 7999999999998765432 11 0 01
Q ss_pred ccchhH---HHHHhHHHHHHHHhCCCCch--------hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---
Q psy224 207 NGGNCL---ATFVCTLQNWFKEFGFNVPQ--------NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES--- 272 (547)
Q Consensus 207 ~gg~~~---~~~~g~~~~w~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~--- 272 (547)
.+.+.+ ..++|.+++||++.+..... .+.++.+.+ .+++.++++++++|+|||.|+|.|++++
T Consensus 319 ~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~---~a~~~p~g~~gllflP~l~Ger~P~~d~~ar 395 (536)
T TIGR01234 319 PGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSE---AAAKQPSGEHGLVALDWFNGNRSPLVDQRLK 395 (536)
T ss_pred CCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHH---HHHhCCCCCCCeEecchhccCCCCCCCCcce
Confidence 111111 35678999999998632110 012333322 1335677899999999999999999985
Q ss_pred ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 273 ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 273 ~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
|.|+|++..| ++.||+||++||++|.+|++++ .+++.| +++|+++|||++||+.|+|++||++|+||.+....+.
T Consensus 396 G~~~Gl~~~~-~~~~~~RAvlEgia~~~~~~l~--~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~ 472 (536)
T TIGR01234 396 GVITGLTLAT-DAPLLYRALIEATAFGTRMIME--TFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQA 472 (536)
T ss_pred EEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcc
Confidence 7999999997 9999999999999999999999 466655 6899999996479999999999999999998877664
Q ss_pred hh
Q psy224 351 RD 352 (547)
Q Consensus 351 ~~ 352 (547)
.+
T Consensus 473 ~a 474 (536)
T TIGR01234 473 PA 474 (536)
T ss_pred hh
Confidence 43
No 16
>PLN02669 xylulokinase
Probab=100.00 E-value=2.6e-50 Score=434.13 Aligned_cols=334 Identities=16% Similarity=0.206 Sum_probs=268.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHH----------HHHHHHH---------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVR----------KIVSTLH--------- 63 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~----------~~~~~~~--------- 63 (547)
++|+||||+|||++|++|+|.+|++ +++++.+|+..+|.. ..+|++||||+ .||+++.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~v-v~~a~~~~~~~~~~~--~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~~ 83 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRI-VASEIVHFDSDLPHY--GTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAKE 83 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCE-EEEEEecCCcccCcC--CCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHHc
Confidence 5799999999999999999999998 999999997555432 34566778777 6777432
Q ss_pred --------------------------------------------------HHHhhCCchhhhhhceeccC----------
Q psy224 64 --------------------------------------------------NCILRLPKDHLKQVKHIEST---------- 83 (547)
Q Consensus 64 --------------------------------------------------~~i~~~d~r~~~~~~~i~~~---------- 83 (547)
+++.|+|.|+.++++.+...
T Consensus 84 ~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~ 163 (556)
T PLN02669 84 KFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKL 163 (556)
T ss_pred CCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHH
Confidence 33469999988777554210
Q ss_pred -----------------------------CCcchhhHHHHHHhCCCCC-ccccccccccccccccCCCccHHHHHhcCCC
Q psy224 84 -----------------------------NDLSFQDFIVAMLCDLQEP-VMSNQNAASWGYFNCKLSTWNEQILRNHEPS 133 (547)
Q Consensus 84 -----------------------------~~l~~~d~l~~~LtG~~~~-~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~ 133 (547)
.++.++|||.|+||| +. .+|+|+||+|+|||+++++|++++|+.++++
T Consensus 164 tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG--~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~ 241 (556)
T PLN02669 164 TGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVG--DYASIDETDGAGMNLMDIEKRCWSKAALEATAPG 241 (556)
T ss_pred HCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcC--CCccccchhhhhhhhhccccCCcCHHHHHhhCcc
Confidence 157899999999999 85 6999999999999999999999999999655
Q ss_pred CCCCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cc
Q psy224 134 FPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MG 203 (547)
Q Consensus 134 i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~ 203 (547)
++ ++||+++++++++|+|++++ +||++||||++|++|++|+++|+|+. +|++.+|+|||+++.++++ .+
T Consensus 242 l~-~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~~~~~~ 320 (556)
T PLN02669 242 LE-EKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQPSLEG 320 (556)
T ss_pred HH-HHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCCCCCCc
Confidence 54 78999999999999999997 99999999999999999999999996 7999999999998765532 11
Q ss_pred cc----c-ccchhH---HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCC----C
Q psy224 204 AS----M-NGGNCL---ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIA----E 271 (547)
Q Consensus 204 ~~----~-~gg~~~---~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~----~ 271 (547)
.. . ++.+.. ..++|.+++|+++.+.. ..++.+++++. ..++++++++++||+.||+.|+. .
T Consensus 321 ~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~-~~~~~~~~~~~------~~~~g~~g~l~~~~~~~e~~P~~~~~~~ 393 (556)
T PLN02669 321 HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCAD-GSWDVFNKLLE------QTPPLNGGKLGFYYKEHEILPPLPVGFH 393 (556)
T ss_pred ceeeCccCCCCeEEEEEecchHHHHHHHHHHhcc-CcHHHHHHHHH------hCCCCCCCEEEeeccCcccCCCCCCccc
Confidence 11 1 222211 35678899999998632 23455555543 24567889998899999999963 2
Q ss_pred C---ceEEecccCC--------CCHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 272 S---ASVTHITIQN--------LGVTKLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 272 ~---~~~~gl~~~~--------~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
+ |.|.|++..+ +++.|++||++||++|.+|.+++. +.. ..+++|+++||| +||+.|+|++||++|
T Consensus 394 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~--l~~~~~~~~i~~~GGg-s~s~~w~Qi~ADVlg 470 (556)
T PLN02669 394 RYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAER--FGMPVPPKRIIATGGA-SANQSILKLIASIFG 470 (556)
T ss_pred hhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCcEEEEEcCh-hcCHHHHHHHHHHcC
Confidence 2 6788887762 389999999999999999999995 533 237899999998 999999999999999
Q ss_pred CceEEecchhhhh
Q psy224 340 LQLIVEQDQAMRD 352 (547)
Q Consensus 340 ~~v~~~~~~~~~~ 352 (547)
+||.+.+.++..+
T Consensus 471 ~pV~~~~~~ea~a 483 (556)
T PLN02669 471 CDVYTVQRPDSAS 483 (556)
T ss_pred CCeEecCCCCchH
Confidence 9999988766433
No 17
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=8.1e-46 Score=393.31 Aligned_cols=310 Identities=14% Similarity=0.189 Sum_probs=236.8
Q ss_pred EEEEeCCceeEEEEEecC---CCeee-cccccccccCCCCcCCCCCCccccCHHHHHHHHH-------------------
Q psy224 7 LGIDIGTTSVKVCLIDAN---TREEL-SSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLH------------------- 63 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~---g~~~l-~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~------------------- 63 (547)
||||+|||++|++|+|.+ |++ + ++...+++.. .+.+++.+||++.||+++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~i~~Igis 74 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKL-TLEEIHRFKNGL-----VSQNGHECWDIDALEQEIRLGLNKVDAEGIAPDSIGID 74 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceE-EEEEEEeCCCCC-----EeECCEEEEehHHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 589999999999999998 444 4 4555554332 3577899999999998543
Q ss_pred -----------------HHHhhCCchhhhhhceeccC--------------------------------------CCcch
Q psy224 64 -----------------NCILRLPKDHLKQVKHIEST--------------------------------------NDLSF 88 (547)
Q Consensus 64 -----------------~~i~~~d~r~~~~~~~i~~~--------------------------------------~~l~~ 88 (547)
++|.|.|.|+.++++.+... .++++
T Consensus 75 ~q~~~~v~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~ 154 (454)
T TIGR02627 75 TWGVDFVLLDQNGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVAHFLLI 154 (454)
T ss_pred ccceeEEEEcCCCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHHHhCCH
Confidence 44678999987766554211 15789
Q ss_pred hhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCCCCCeEEe-
Q psy224 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV- 167 (547)
Q Consensus 89 ~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~~- 167 (547)
+|||.|+||| +.++|+|+||+|+|||+++++|++++++.+ +|++++|||++++++++|.+++ .|+ +++||++
T Consensus 155 ~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~l~~~~~~~G~~~~--~gl-~g~pVv~~ 227 (454)
T TIGR02627 155 PDYLNYRLTG--KKVWEYTNATTTQLVNINTDDWDEDLLAYL--GVPAAWFGRPTHPGNVIGLWEC--PQG-NQIPVVAV 227 (454)
T ss_pred HHHHHHheeC--CceeeeehhhhcccccCCCCCcCHHHHHHc--CCCHHHcCCccCCCCeeEEeec--ccC-CCCCEEEE
Confidence 9999999999 999999999999999999999999999999 5999999999999999999865 466 7899998
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cc----ccc----ccchhH--HHHHhHHHHHHHHhCCCC
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MG----ASM----NGGNCL--ATFVCTLQNWFKEFGFNV 230 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~----~~~----~gg~~~--~~~~g~~~~w~~~~~~~~ 230 (547)
|+||++|+++|+|+. +|++++++|||.++...++ .+ ..+ .+.+.+ ...++ |+++.+...
T Consensus 228 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----W~~~~~~~~ 303 (454)
T TIGR02627 228 ATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYRVLKNIMGL----WLLQRVCRE 303 (454)
T ss_pred CCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEEeecchhhh----HHHHHHHhh
Confidence 999999999999997 7999999999998765432 11 001 111111 12223 555532110
Q ss_pred chhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCc----------eEEecccCCCCHHHHHHHHHHHHHHHH
Q psy224 231 PQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESA----------SVTHITIQNLGVTKLFVALCEGIINNI 300 (547)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~----------~~~gl~~~~~~~~~l~ra~~Egia~~~ 300 (547)
.....++++.+.. ...++ +.|++.|++.|++++. .|+|++..| +++||+||++||++|.+
T Consensus 304 ~~~~~~~~l~~~a---~~~p~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~-~~~~l~RAv~Egva~~~ 373 (454)
T TIGR02627 304 RDINDLPALIEQA---QALPA------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPE-SDAELARCIFDSLALLY 373 (454)
T ss_pred hccccHHHHHHHh---cCCCC------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHH
Confidence 0112234443221 12222 4466788888887763 459999998 99999999999999999
Q ss_pred HHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 301 HDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 301 ~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
|++++ .+++. + +++|+++||| +||+.|+|++||++|+||....
T Consensus 374 r~~~e--~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~~~ 419 (454)
T TIGR02627 374 RQVLL--ELAELRGKPISQLHIVGGG-SQNAFLNQLCADACGIRVIAGP 419 (454)
T ss_pred HHHHH--HHHHhhCCCcCEEEEECCh-hhhHHHHHHHHHHhCCceEcCC
Confidence 99999 47653 4 6899999998 9999999999999999998765
No 18
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.7e-43 Score=358.68 Aligned_cols=338 Identities=18% Similarity=0.235 Sum_probs=276.9
Q ss_pred CceEEEEEeCCceeEEEEEecC-CCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN-TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~-g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
|.|+||||+||.|.|+++||.. |++ ++.+.++|+... +.+...||+++++|++++.+
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~-la~a~~p~~~~~-----~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~ 75 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTL-LARAVRPYPMWQ-----PGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVV 75 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcc-hhhcccceeccc-----cCccccccCHHHHHHHHHHHHHHHHHHcCCChhHee
Confidence 6899999999999999999987 998 999999998765 46777899999999977655
Q ss_pred --------------------------------HhhCCchhhhhhceeccC------------------------------
Q psy224 66 --------------------------------ILRLPKDHLKQVKHIEST------------------------------ 83 (547)
Q Consensus 66 --------------------------------i~~~d~r~~~~~~~i~~~------------------------------ 83 (547)
|.|+|.|+.++++.|+.+
T Consensus 76 gIGvDaTcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~ 155 (544)
T COG1069 76 GIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPA 155 (544)
T ss_pred EEEEcceeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChH
Confidence 568888888887777643
Q ss_pred ------CCcchhhHHHHHHhCCCCCccccccccccccccc-cCCCccHHHHHhcCCCCCC---CCCC-CcccCCccceee
Q psy224 84 ------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNC-KLSTWNEQILRNHEPSFPL---HLLP-KIQPSGTIVGTL 152 (547)
Q Consensus 84 ------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~g~~i~~---~~Lp-~i~~~~~~~G~v 152 (547)
.++.+.|||.|+||| +..-+.+++.....|.- +++-|++++++.+|++.-. .+|| ++++.|+.+|.+
T Consensus 156 ~~~~a~~~fdl~D~l~~~ltG--~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~L 233 (544)
T COG1069 156 VWERAAHIFDLADWLTWKLTG--SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGL 233 (544)
T ss_pred HHHHhhhhhhHHHHHHHHhhc--chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCcccccc
Confidence 157899999999999 88888888877778888 5566999999999754332 4577 889999999999
Q ss_pred cccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------------cccccccchhH---H
Q psy224 153 TRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------------MGASMNGGNCL---A 213 (547)
Q Consensus 153 ~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------------~~~~~~gg~~~---~ 213 (547)
++++ +||+++|.|++|..|..++++|++.. ++.++..+|||+|.+..++ .++..+|-..+ |
T Consensus 234 t~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQ 313 (544)
T COG1069 234 TPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQ 313 (544)
T ss_pred CHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccc
Confidence 9998 99999999999999999999999965 8999999999999876643 12233433222 5
Q ss_pred HHHhHHHHHHHHhC--------CCCc-hhHHHHHHHhc----cCcccccccCCCCeEEecCccCcccCCCCC---ceEEe
Q psy224 214 TFVCTLQNWFKEFG--------FNVP-QNQIWAKLINA----SDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTH 277 (547)
Q Consensus 214 ~~~g~~~~w~~~~~--------~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~g 277 (547)
+.+|.+++||.+.. .... ..+.++.+.+. ........+.+++++++|+++|.|+|+.|+ |.|+|
T Consensus 314 SatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~G 393 (544)
T COG1069 314 SATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITG 393 (544)
T ss_pred hhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCCccceeEEec
Confidence 78899999999973 1111 11222222111 112335667899999999999999999986 89999
Q ss_pred cccCCCCHH---HHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 278 ITIQNLGVT---KLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 278 l~~~~~~~~---~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++++| +.+ .+|+|.+|+++|..|++++ .+++.| +++|+++||. .||++|||++||++|+|++++..++...
T Consensus 394 ltL~T-~~~~l~~lY~a~l~a~A~GtR~Iie--~~~~~g~~Id~l~~sGG~-~KN~llmql~aDvtg~~v~i~~s~~a~l 469 (544)
T COG1069 394 LTLDT-SPESLALLYRALLEATAFGTRAIIE--TFEDQGIAIDTLFASGGI-RKNPLLMQLYADVTGRPVVIPASDQAVL 469 (544)
T ss_pred cccCC-CcHHHHHHHHHHHHHHHHhHHHHHH--HHHHcCCeeeEEEecCCc-ccCHHHHHHHHHhcCCeEEeecccchhh
Confidence 99998 888 9999999999999999999 588887 7999999997 9999999999999999999997766544
No 19
>KOG2517|consensus
Probab=100.00 E-value=7.9e-42 Score=350.04 Aligned_cols=335 Identities=25% Similarity=0.365 Sum_probs=271.7
Q ss_pred CceEEEEEeCCceeEEEEEe-cCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLID-ANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+++++|||+||||.|++|+| .+|+. ++.+..++.... +.+||.||+|.++|+++++|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~-l~~~~~~i~~~~-----~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~ 78 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGEL-LSLAQKEITQEF-----PKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVV 78 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCcc-ceeeeeeeeeec-----CCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 58999999999999999999 68887 899988886644 58999999999999977766
Q ss_pred ----------------------------HhhCCchhhhhhceeccCC---------------------------------
Q psy224 66 ----------------------------ILRLPKDHLKQVKHIESTN--------------------------------- 84 (547)
Q Consensus 66 ----------------------------i~~~d~r~~~~~~~i~~~~--------------------------------- 84 (547)
|.|+|.|+..+++.+....
T Consensus 79 ~~~~igv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~ 158 (516)
T KOG2517|consen 79 GATCIGVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPE 158 (516)
T ss_pred ccEEEEEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHH
Confidence 5678888877777664220
Q ss_pred --------Ccchhh---HHHHHHhCCCC-CccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceee
Q psy224 85 --------DLSFQD---FIVAMLCDLQE-PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTL 152 (547)
Q Consensus 85 --------~l~~~d---~l~~~LtG~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v 152 (547)
++..++ |+.+++|+... +.+|.++||++++||..++.||..+++.+ ++|.+.||++..+++++|++
T Consensus 159 ~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~--~lp~~llp~i~s~~e~~g~~ 236 (516)
T KOG2517|consen 159 VLKAKEEGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFF--GLPLNLLPDIRSSSEVYGTT 236 (516)
T ss_pred HHHHHHhcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhh--CCCcccCCcccccccccccc
Confidence 234444 45555555323 67899999999999999999999999999 69999999999999999998
Q ss_pred cccccCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-------cc-------cccccch---hH--
Q psy224 153 TRDWLGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-------MG-------ASMNGGN---CL-- 212 (547)
Q Consensus 153 ~~~~~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-------~~-------~~~~gg~---~~-- 212 (547)
....+|+.+|+||.+..+|++|+++|..+. +++...++||+..+..+.. .| .+-.|.. .+
T Consensus 237 ~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg 316 (516)
T KOG2517|consen 237 AAGDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEG 316 (516)
T ss_pred cccccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhc
Confidence 777788999999999999999999999887 6899999999998865531 11 1111211 11
Q ss_pred -HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHH
Q psy224 213 -ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKL 288 (547)
Q Consensus 213 -~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l 288 (547)
...++.+++|+++.+.-..+...+++++.. .....+++|.|.|.|.|+|+|++ |.+.|++.++ +.+||
T Consensus 317 ~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~-------~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~t-s~~hi 388 (516)
T KOG2517|consen 317 HAAFAGALVQWLRDNLGIIEELNEIEKLAAE-------VNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDT-SKEHL 388 (516)
T ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hcccCceEEEccccCCCCCCCCcccceeEEEecCCC-CHHHH
Confidence 244778999999975333333444554432 23678999999999999999996 8999999998 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-c--CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhhc
Q psy224 289 FVALCEGIINNIHDIMNRSVLHR-S--GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASYA 356 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~-~--g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~~ 356 (547)
.||++|+|+|+.|++++. ++. . +++++++.|| ++||++++|++||++|+||.+++..+..+.+++
T Consensus 389 a~A~leai~fqtr~Il~a--m~~~~~~~i~~L~~~GG-~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA 456 (516)
T KOG2517|consen 389 ARAALEAIAFQTREILEA--MERDGGHPISTLRVCGG-LSKNPLLMQLQADILGLPVVRPQDVEAVALGAA 456 (516)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhcCCCcceeeeccc-cccCHHHHHHHHHHhCCccccccchhHHHHHHH
Confidence 999999999999999995 544 3 4889999999 599999999999999999999998887655544
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=6.7e-40 Score=348.27 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=213.5
Q ss_pred CCCCccccCHHHHHHHH------------------------------------HHHHhhCCchhhhhhceeccC------
Q psy224 46 SNPGAHEQNVRKIVSTL------------------------------------HNCILRLPKDHLKQVKHIEST------ 83 (547)
Q Consensus 46 ~~~g~~e~d~~~~~~~~------------------------------------~~~i~~~d~r~~~~~~~i~~~------ 83 (547)
+.+++.++||+.||+++ +++|.|+|+|+.++++.+...
T Consensus 26 ~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~I~~Igis~q~~~~v~lD~~G~pL~pai~w~D~Ra~~~~~~l~~~~~~~~~ 105 (471)
T PRK10640 26 SQDGFDTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDSRTDGVMAQAQQQLGKRDI 105 (471)
T ss_pred eeCCeeEECHHHHHHHHHHHHHHHhhcCCCccEEEEcCCcccEEEECCCCCCcCCceeccCCCCHHHHHHHHHhcCHHHH
Confidence 57789999999999854 444788999987666544211
Q ss_pred --------------------------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcC
Q psy224 84 --------------------------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131 (547)
Q Consensus 84 --------------------------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g 131 (547)
.+++++|||.|+||| +.++|+|+||+|+|||+++++||+++++.+
T Consensus 106 ~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG--~~~~d~s~as~t~l~d~~~~~W~~ell~~~- 182 (471)
T PRK10640 106 YRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTG--KMNWEYTNATTTQLVNINSDDWDESLLAWS- 182 (471)
T ss_pred HHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhC--CcceeecHhhhccccCCCcCCcCHHHHHHc-
Confidence 157999999999999 999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCccceeecccccCCCCCCeEEe-cCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-c------
Q psy224 132 PSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV-ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-M------ 202 (547)
Q Consensus 132 ~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~~-g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-~------ 202 (547)
+|++++||+++++++++|.+++++ | .|+||++ |+||++|+++|+|+. ++++++|+|||+++.++++ .
T Consensus 183 -Gi~~~~LP~lv~~~~~~G~v~~~~-g--~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GT~~~~~~~~~~p~~~~~~ 258 (471)
T PRK10640 183 -GAPKAWFGRPTHPGNVIGHWICPQ-G--NEIPVVAVASHDTASAVIASPLNDSDAAYLSSGTWSLMGFESQTPFTNDTA 258 (471)
T ss_pred -CCCHHHcCCCcCCCccceeeeccc-C--CCCCEEEeCCCcHHHHhhccCCCCCCeEEEEeccHhhhheecCCCcCCHHH
Confidence 599999999999999999998764 5 6899998 699999999999997 7999999999998865532 0
Q ss_pred ---cccc----ccchhH-HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCC--CC
Q psy224 203 ---GASM----NGGNCL-ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIA--ES 272 (547)
Q Consensus 203 ---~~~~----~gg~~~-~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~--~~ 272 (547)
+..+ ++.+.+ ....| .|+++.+........++++.+. +.+. +++++++ +| .|+|.+.. .+
T Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~g---~W~~~~~~~~~~~~~~~~l~~~---a~~~-~g~~gli-~p--~ger~~~~~~ar 328 (471)
T PRK10640 259 LAANITNEGGAEGRYRVLKNIMG---LWLLQRVLQERQITDLPALIAA---TAAL-PACRFLI-NP--NDDRFINPPSMC 328 (471)
T ss_pred HHhccCccCCCCceEEEecchhH---HHHHHHHHHHhccCCHHHHHHH---HHhC-CCCCcee-CC--CcccccCchhhH
Confidence 1111 111111 11222 7999864311000112233221 1223 3677876 58 79995321 13
Q ss_pred ceEEecccCC-----CCHHHHHHHHHHHHHHHHHHhhhhhhhhhc-C--CcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 273 ASVTHITIQN-----LGVTKLFVALCEGIINNIHDIMNRSVLHRS-G--INRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 273 ~~~~gl~~~~-----~~~~~l~ra~~Egia~~~~~~~~~~~l~~~-g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
|+|+|++..| ++++||+||++||++|.+|.+++ .+++. + +++|+++||| +||++|+|++||++|+||..
T Consensus 329 g~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~--~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvlg~pV~~ 405 (471)
T PRK10640 329 SEIQAACRETAQPVPESDAELARCIFDSLALLYADVLH--ELAQLRGEPFSQLHIVGGG-CQNALLNQLCADACGIRVIA 405 (471)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCCcceEEEECCh-hhhHHHHHHHHHHhCCCeee
Confidence 7885555542 28999999999999999999999 47653 4 6899999998 99999999999999999987
Q ss_pred ecc
Q psy224 345 EQD 347 (547)
Q Consensus 345 ~~~ 347 (547)
.+.
T Consensus 406 ~~~ 408 (471)
T PRK10640 406 GPV 408 (471)
T ss_pred CCh
Confidence 664
No 21
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=267.93 Aligned_cols=189 Identities=54% Similarity=0.951 Sum_probs=174.9
Q ss_pred hccCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.++|+++|+|+.+.. .++.+.+++++++.|||+||+|||+.++++|++|+..++++|++|+++|++||++|+|+.+.+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHK 82 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHH
Confidence 459999999999984 2333458999999889999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+..++.....+++||+++|.++++++.||+..++.|.+.|.+|||||+|.|++..+++.+.+|+++|+|+.++++|.
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~ 162 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQF 162 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 99999777776667999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 544 (547)
.+++|+.||+||++|+++|++..+. .++++
T Consensus 163 ~~~hg~vcPanW~~G~~~i~p~~~~-~~~~~ 192 (194)
T COG0450 163 VAKHGEVCPANWKPGDKTIKPSPDL-GEYLK 192 (194)
T ss_pred HHHhCCCccCCCCCCCccccCCccc-hhhhh
Confidence 9999999999999999999998776 66654
No 22
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=2.3e-34 Score=266.07 Aligned_cols=181 Identities=34% Similarity=0.665 Sum_probs=164.7
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+.+|.++|+|+.+.+.+|++..+++++++||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|++..+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 34999999999998777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+..+.. .+++||+++|++.++++.||+..+..+...|++||||++|+|++.++.+...+++.+++|+.|+++|+.
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~ 158 (187)
T PRK10382 82 WHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYV 158 (187)
T ss_pred HHHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhH
Confidence 99764321 278999999999999999999765556667999999999999999988888888999999999999999
Q ss_pred hhc-CccccCCccCCCcccccCccc
Q psy224 515 AEH-GEVCPAGWKPGSKTMKADPSG 538 (547)
Q Consensus 515 ~~~-~~~~~~~w~~~~~~~~~~~~~ 538 (547)
+++ |..||+||++|+++|...+..
T Consensus 159 ~~~~g~~~p~~w~~~~~~~~~~~~~ 183 (187)
T PRK10382 159 ASHPGEVCPAKWKEGEATLAPSLDL 183 (187)
T ss_pred hhcCCeEeCCCCCcCCcceecCHHH
Confidence 999 899999999999999887643
No 23
>PRK15000 peroxidase; Provisional
Probab=100.00 E-value=2e-34 Score=270.33 Aligned_cols=190 Identities=43% Similarity=0.856 Sum_probs=167.6
Q ss_pred ccCCCCCCeeeccccC--Cce-eeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh
Q psy224 356 ALEKPAPEFEGQAVVN--GQF-KNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~--G~~-~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~ 431 (547)
.+|+++|+|++++ .. |+. +.++++++ +||++||+|||++|||+|+.|+++|++++++|+++|++|++||+|+...
T Consensus 3 ~vg~~aPdF~~~~-~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAA-VLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeec-ccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 4899999999998 43 421 24566766 8999999999889999999999999999999999999999999999988
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++|.+...+.....+++||+++|++.++++.||+..+..+...|++||||++|+|++.+.++.+.+++++++|+.|+++
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88887653332222257999999999999999999866667779999999999999999999999999999999999999
Q ss_pred HhhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 512 QFVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 512 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
|...++|+.||++|++|+++|.+..++.++||.++
T Consensus 162 ~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 196 (200)
T PRK15000 162 QFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAEN 196 (200)
T ss_pred hhHHhcCCCcCCCCCCCCceeccCHHHHHHHHHHh
Confidence 99999999999999999999999999999998764
No 24
>KOG0852|consensus
Probab=100.00 E-value=2.6e-34 Score=248.24 Aligned_cols=191 Identities=72% Similarity=1.202 Sum_probs=184.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+..++|+|+-..+++|.++.++|++|+||+++++|||..+.-+|++++-.++..+++|++.|.+|+++|+|+.+.+.+|.
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ 85 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWI 85 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHh
Confidence 56677999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhh
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~ 516 (547)
+.-++...-..+++|+++|.+.++++.||+..++.|.+.+..||||++|.+|++.+++.+.+|+++|++++++++|.+.+
T Consensus 86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~td~ 165 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFTDE 165 (196)
T ss_pred cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhhhc
Confidence 99888877777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCccCCCcccccCccchhcccccCC
Q psy224 517 HGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 517 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
+|..||++|+||+++|+++++++|+||..+|
T Consensus 166 ~geVcPagW~pgs~tikp~~~~skeyf~k~~ 196 (196)
T KOG0852|consen 166 HGEVCPAGWKPGSDTIKPDVKDSKEYFSKHN 196 (196)
T ss_pred cCccccCCCCCCCcccCCCcchhHHHHhhcC
Confidence 9999999999999999999999999999887
No 25
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=5.9e-34 Score=274.06 Aligned_cols=189 Identities=40% Similarity=0.795 Sum_probs=168.5
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+++|+|+++++.+|+++.++++++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+++.++
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHK 147 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 4599999999998744675567999998 899999999999999999999999999999999999999999999988888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+...+.....+++||+++|++.+++++||+..+ .|.+.|++||||++|+|++.++.+.+.+++++|+|+.|+++|.
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~ 226 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQF 226 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhch
Confidence 888742222222378999999999999999998753 3557899999999999999998888999999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 544 (547)
..++|+.||++|++|+++|.+.+...++||.
T Consensus 227 ~~~~g~~cPanW~~g~~~~~~~~~~~~~~~~ 257 (261)
T PTZ00137 227 AEKTGNVCPVNWKQGDQAMKPDSQSVKQYLS 257 (261)
T ss_pred hhhcCCCcCCCCCcCCceecCCcccHHHHHh
Confidence 9999999999999999999999988888875
No 26
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.4e-32 Score=259.01 Aligned_cols=183 Identities=37% Similarity=0.681 Sum_probs=161.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++++ ..| .+++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus 3 ~vG~~aP~F~~~~-~~g---~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w 78 (202)
T PRK13190 3 KLGQKAPDFTVNT-TKG---PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAW 78 (202)
T ss_pred CCCCCCCCcEEec-CCC---cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 3899999999998 777 699999999999998888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++..+.... .++||+++|++++++++||+.....+...|++||||++|+|++...++...+++++|+++.|+++|...
T Consensus 79 ~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~ 157 (202)
T PRK13190 79 LRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNW 157 (202)
T ss_pred HHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 8754332211 378999999999999999997655566789999999999999999888888999999999999999999
Q ss_pred hcCccccCCccCCCcccccCc---cchhccc
Q psy224 516 EHGEVCPAGWKPGSKTMKADP---SGSQEYF 543 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~---~~~~~~~ 543 (547)
++|+.||+||++|+++|++.. ++.+.+|
T Consensus 158 ~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 188 (202)
T PRK13190 158 KRKVATPANWQPGQEGIVPAPSTLDEAEMRI 188 (202)
T ss_pred hcCCCcCCCCCcCCceecCCCCCHHHHHHHh
Confidence 999999999999999999964 4445555
No 27
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.9e-32 Score=259.53 Aligned_cols=177 Identities=38% Similarity=0.674 Sum_probs=157.1
Q ss_pred hccCCCCCCeeeccccCCceeeEecc-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLS-QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+++|+|++++ .+| .+++. +++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+...+.
T Consensus 7 ~~iG~~aPdF~l~~-~~G---~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~ 82 (215)
T PRK13191 7 PLIGEKFPEMEVIT-THG---KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHI 82 (215)
T ss_pred ccCCCcCCCCEeec-CCC---CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 34999999999998 788 46664 47999999999999999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+..++.... +++||+++|++.++++.||+..+.. +...|++||||++|+|++.++++.+.+++++|+|+.|+++|
T Consensus 83 aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 83 EWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 887654332222 7899999999999999999975432 45689999999999999999999999999999999999999
Q ss_pred hhhhcCccccCCccC----CCcccccCc
Q psy224 513 FVAEHGEVCPAGWKP----GSKTMKADP 536 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~----~~~~~~~~~ 536 (547)
...++|+.||+||++ |+++|++..
T Consensus 162 ~~~~~~~~~P~~w~~~~~~g~~~~~~~~ 189 (215)
T PRK13191 162 LVDKAGVVTPANWPNNELIGDKVINPAP 189 (215)
T ss_pred hhhhcCCCcCCCCCCCCCCCCceecCCC
Confidence 999999999999997 999999965
No 28
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=100.00 E-value=1.6e-32 Score=258.63 Aligned_cols=190 Identities=64% Similarity=1.127 Sum_probs=166.8
Q ss_pred ccCCCCCCeeecccc-CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~-~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|+++++. +++++.+++++++||++||+|||++||++|+.++++|++++++|+++|++|++||.|+...+.+
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~ 86 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQ 86 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence 389999999987621 3444689999999999999999999999999999999999999999999999999999888777
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|....+......+++||+++|+++++++.||+...+.+...|++||||++|+|++.++++.+.+++++++++.|+++|..
T Consensus 87 ~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~ 166 (199)
T PTZ00253 87 WTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFV 166 (199)
T ss_pred HHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhH
Confidence 76533221112258999999999999999999866556678999999999999999999888999999999999999999
Q ss_pred hhcCccccCCccCCCcccccCccchhccccc
Q psy224 515 AEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 515 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
.+++++||++|++|+++|++.++..+.++..
T Consensus 167 ~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00253 167 EKHGEVCPANWKKGDPTMKPDPNKSKEGFFS 197 (199)
T ss_pred HhcCCEeCCCCCcCCccccCChHHHHHHhhc
Confidence 9999999999999999999998888887754
No 29
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=3.2e-32 Score=257.10 Aligned_cols=183 Identities=36% Similarity=0.623 Sum_probs=161.9
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|++++ .+| .+++++++| |++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+.+.+|
T Consensus 1 vG~~aP~F~~~~-~~g---~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADT-THG---PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEec-CCC---cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 588999999998 777 689999998 788888888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccC--CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE--TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~--~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.++.+.+.+ .+++||+++|+++++++.||+.... .+...|++||||++|+|++.++++...+++++++++.|+++|.
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 887554443 4899999999999999999987543 2345689999999999999999898889999999999999999
Q ss_pred hhhcCccccCCccCCCcccccCc---cchhcccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADP---SGSQEYFK 544 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~ 544 (547)
+.++++.||+||++|+++|++.. ++.+..|+
T Consensus 156 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 189 (203)
T cd03016 156 TDKHKVATPANWKPGDDVIVPPSVSDEEAKKKFP 189 (203)
T ss_pred HhhcCcCcCCCCCCCCceecCCCCCHHHHHHhcc
Confidence 99999999999999999999953 55555553
No 30
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=100.00 E-value=6.9e-32 Score=251.61 Aligned_cols=178 Identities=41% Similarity=0.773 Sum_probs=158.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|+++++.+|+.+.+++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 48999999999984467444788999999999999999999999999999999999999999999999999998888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+..... .+++||+++|++.++++.||+..+..+...|++||||++|+|++.++...+..++++++++.|++++.+.
T Consensus 83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 159 (187)
T TIGR03137 83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVA 159 (187)
T ss_pred Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 7753211 2689999999999999999998655555679999999999999999877777789999999999999999
Q ss_pred hc-CccccCCccCCCcccccCc
Q psy224 516 EH-GEVCPAGWKPGSKTMKADP 536 (547)
Q Consensus 516 ~~-~~~~~~~w~~~~~~~~~~~ 536 (547)
++ |+.||++|.+++++|..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T TIGR03137 160 AHPGEVCPAKWKEGAETLKPSL 181 (187)
T ss_pred hcCCeeeCCCCCcCCccccCCh
Confidence 99 8999999999999998875
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=8.3e-32 Score=254.85 Aligned_cols=185 Identities=30% Similarity=0.534 Sum_probs=161.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +...+++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus 3 ~~Gd~aPdF~l~t-~~G--~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVT-TQG--VKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeEC-CCC--cEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 4899999999998 788 4666789999999888888999999999999999999999999999999999999888888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
.+..++.. ..+++||+++|++.++++.||+..+..+ ...|++||||++|+|++.++++...+++++++++.|+++|.+
T Consensus 80 ~~~i~~~~-~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~ 158 (215)
T PRK13599 80 VEWIKDNT-NIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTA 158 (215)
T ss_pred HHhHHHhc-CCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 77543221 1278999999999999999998754322 257999999999999999988888889999999999999999
Q ss_pred hhcCccccCCccC----CCcccccC---ccchhcccc
Q psy224 515 AEHGEVCPAGWKP----GSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 515 ~~~~~~~~~~w~~----~~~~~~~~---~~~~~~~~~ 544 (547)
.++++.||+||++ |++||++. .++.+..|+
T Consensus 159 ~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~ 195 (215)
T PRK13599 159 DQYGVALPEKWPNNYLIKDHVIVPPSTDEASANERKE 195 (215)
T ss_pred hhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHhcc
Confidence 9999999999999 99999994 256566665
No 32
>PRK13189 peroxiredoxin; Provisional
Probab=99.98 E-value=1.5e-31 Score=254.75 Aligned_cols=185 Identities=37% Similarity=0.636 Sum_probs=162.4
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+.+|+|++++ .+| .++++++ +||++||+|||++|||+|+++++.|++++++|+++|++|++||+|+...+.
T Consensus 9 ~~vG~~aPdF~~~~-~~g---~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~ 84 (222)
T PRK13189 9 PLIGDKFPEFEVKT-THG---PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI 84 (222)
T ss_pred ccCCCcCCCcEeEc-CCC---CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence 34899999999998 788 5788775 999999999999999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC-CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~-g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+..++.... +++||+++|.+.+++++||+..... +...|++||||++|+|++.++++.+.+++++++++.|+++|
T Consensus 85 aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 85 KWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 888865432211 5899999999999999999875332 34689999999999999999989989999999999999999
Q ss_pred hhhhcCccccCCccCCC----cccccCc---cchhcccc
Q psy224 513 FVAEHGEVCPAGWKPGS----KTMKADP---SGSQEYFK 544 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~----~~~~~~~---~~~~~~~~ 544 (547)
...++|+.||+||++|+ ++|++.. ++.+..|+
T Consensus 164 ~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~ 202 (222)
T PRK13189 164 TSDEKGVATPANWPPNDLIKDKVIVPPASSVEEAKKRLE 202 (222)
T ss_pred hHhhcCcCcCCCCCCCCCCCCceeeCCCCCHHHHHHhhc
Confidence 99999999999999999 9999963 56666664
No 33
>KOG2531|consensus
Probab=99.98 E-value=1.9e-31 Score=262.70 Aligned_cols=336 Identities=15% Similarity=0.193 Sum_probs=250.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCC----C---CccccCHHHHHHHHH-------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSN----P---GAHEQNVRKIVSTLH------------- 63 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~----~---g~~e~d~~~~~~~~~------------- 63 (547)
..+||+|++|+.+|++++|.+.++ +.++.+.+...+|.+.... . ...++..-+|++++.
T Consensus 9 ~~fLG~DlSTQqlKaviids~LnV-v~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~ 87 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDSNLNV-VHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDL 87 (545)
T ss_pred ceeeeeecccceeEEEEEcCCccE-EEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCH
Confidence 358999999999999999999998 9999999998888763321 1 223444557777421
Q ss_pred ----------------------------------------H------HHhhCCchhhhhhceeccC--------------
Q psy224 64 ----------------------------------------N------CILRLPKDHLKQVKHIEST-------------- 83 (547)
Q Consensus 64 ----------------------------------------~------~i~~~d~r~~~~~~~i~~~-------------- 83 (547)
. +-.|+|+.+..+|+++...
T Consensus 88 ~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSR 167 (545)
T KOG2531|consen 88 SKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSR 167 (545)
T ss_pred HHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcch
Confidence 1 1257888877777766421
Q ss_pred -------------------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCC
Q psy224 84 -------------------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHL 138 (547)
Q Consensus 84 -------------------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~ 138 (547)
..-.+++|++.+|-|. ...+|+|++|+|.|+|++++.|+.++|++..+++ +++
T Consensus 168 Ay~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~-~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL-~~K 245 (545)
T KOG2531|consen 168 AYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGS-YAPIDESDGSGMNLLDIRKKKWSKALLDACAPDL-EEK 245 (545)
T ss_pred hhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhcc-ccceecccccCchHHHHhhhhhhHHHHhhhChhH-HHH
Confidence 1347899999999992 5569999999999999999999999999986555 567
Q ss_pred CCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------cccc----
Q psy224 139 LPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MGAS---- 205 (547)
Q Consensus 139 Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~~~---- 205 (547)
|.+++++..++|+|+.++ +|++++|.|++-.||++++..|.-..++++.+|+|||..+.+.++ .++.
T Consensus 246 L~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~~~p~~egHvf~hP 325 (545)
T KOG2531|consen 246 LGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKEYHPSPEGHVFCHP 325 (545)
T ss_pred hCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcCCCCCCCCcceeccC
Confidence 889999999999999998 999999999999999999999998889999999999999876643 1111
Q ss_pred --cccchhH--HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceE------
Q psy224 206 --MNGGNCL--ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASV------ 275 (547)
Q Consensus 206 --~~gg~~~--~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~------ 275 (547)
.+....+ .-|++++++-+|+..-. ..++-++++++. -+.++++-+-+-|-.+|-.|....|..
T Consensus 326 ~~~~~YM~mlCfkNgSL~RE~ir~~~~~-~sWd~Fne~L~~------t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~ 398 (545)
T KOG2531|consen 326 TDPNHYMGMLCFKNGSLTRERIRNESAN-GSWDKFNEILDS------TPSGNNGNLGVYFPEREIVPSVPKGTLRFIFEN 398 (545)
T ss_pred CCccceEEEEEecCChHHHHHHhhcccC-CCHHHHHHHhcc------CcCCCCCceeEecccccccCCCCccceEEEecC
Confidence 1110011 24566777999986433 345666666543 344666554332334555664333311
Q ss_pred -------EecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 276 -------THITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 276 -------~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
.++-... ++++-+||++||..+..|...+.|.+......+|+++||+ ++|+.+.|++||+++.||...+.+
T Consensus 399 ~~~~~~~~~v~kf~-~p~~e~rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGA-S~N~~Ilq~iadVf~apVy~~~~~ 476 (545)
T KOG2531|consen 399 KELSAERIEVAKFS-DPEIEARALVEGQFLSKRARAEPLGFKSNPPTRILVTGGA-SRNEAILQIIADVFGAPVYTIEGP 476 (545)
T ss_pred CccchhhcccccCC-CchHHHHHHHHHhHhHhhhhhccccCCCCCCceEEEecCc-cccHHHHHHHHHHhCCCeEeecCC
Confidence 1222322 5899999999999999999988654444457899999998 999999999999999999998765
Q ss_pred hhh
Q psy224 349 AMR 351 (547)
Q Consensus 349 ~~~ 351 (547)
+..
T Consensus 477 ~sa 479 (545)
T KOG2531|consen 477 NSA 479 (545)
T ss_pred chh
Confidence 543
No 34
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.97 E-value=5.1e-30 Score=236.71 Aligned_cols=171 Identities=67% Similarity=1.169 Sum_probs=150.7
Q ss_pred cCCCCCCeeeccccCC--ceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQAVVNG--QFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G--~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ .+| +++.+++++++||++||+|||++|||+|+.+++.|++++++|++.|+++++||.|+.+..++
T Consensus 1 vG~~aP~f~~~~-~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATA-VVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeec-ccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 588999999998 554 33589999999999999999999999999999999999999999999999999999877777
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+...+.....+++||+++|++.++++.||+.....+...|++||||++|+|++.+++..+..++.+++++.|+.++.+
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~ 159 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFV 159 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence 87754321111278999999999999999999866556678999999999999999988877788999999999999999
Q ss_pred hhcCccccCCccCC
Q psy224 515 AEHGEVCPAGWKPG 528 (547)
Q Consensus 515 ~~~~~~~~~~w~~~ 528 (547)
.++++.||.+|++|
T Consensus 160 ~~~~~~~~~~~~~~ 173 (173)
T cd03015 160 EEHGEVCPANWKPG 173 (173)
T ss_pred hhcCCCcCCCCCCC
Confidence 99999999999986
No 35
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.97 E-value=3.4e-31 Score=258.92 Aligned_cols=164 Identities=30% Similarity=0.514 Sum_probs=141.1
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------- 65 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------- 65 (547)
|+||||+||||+|++|+|.+|++ ++..+.+++... +.+|+.||||++||+.+..+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~i-v~~~~~~~~~~~-----~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKI-VASASRPYPYYT-----PEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCE-EEEEEEEETEBC-----SSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCE-EEEEEEeeeecc-----ccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEE
Confidence 78999999999999999999998 899988887644 46799999999999965544
Q ss_pred ---------------------HhhCCchhhhhhceeccC--------------------------------------CCc
Q psy224 66 ---------------------ILRLPKDHLKQVKHIEST--------------------------------------NDL 86 (547)
Q Consensus 66 ---------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l 86 (547)
|.|.|.|+.++++.+... .++
T Consensus 75 is~~~~~~v~~D~~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~ 154 (245)
T PF00370_consen 75 ISGQGHGLVLLDKDGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAAKFL 154 (245)
T ss_dssp EEE-SSEEEEEETTSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHHEEE
T ss_pred eccccCCcceeccccccccccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhhhcc
Confidence 577888877666655321 158
Q ss_pred chhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCC
Q psy224 87 SFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDT 163 (547)
Q Consensus 87 ~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~ 163 (547)
+++|||.|+||| +.++|+|+||+||+||+++++|++++++.+ ++++++||+++++|+++|++++++ +||++|+
T Consensus 155 ~~~dyl~~~LtG--~~~~d~s~as~tgl~d~~~~~w~~~~l~~~--gi~~~~lP~i~~~g~~~G~~~~~~a~~~Gl~~~~ 230 (245)
T PF00370_consen 155 TLSDYLAYKLTG--RAATDYSNASRTGLYDIRTGQWDEELLEAL--GIPEELLPEIVPPGEIIGTLTPEAAKELGLPEGT 230 (245)
T ss_dssp EHHHHHHHHHHS--C-EEEHHHHCTSSSEETTTTEE-HHHHHHT--TSGGGGSCEEE-TTSEEEEEEHHHHHHHTSTTTE
T ss_pred cHHHHHHhhccc--cccccccchhccccccccccccCHHHHHhh--CCChhhCCcEecCCCeeEEECHHHHHHhCCCCCC
Confidence 999999999999 999999999999999999999999999999 599999999999999999999997 9999999
Q ss_pred eEEecCCchhhhhhc
Q psy224 164 PINVALGDLQCSVLA 178 (547)
Q Consensus 164 ~V~~g~~D~~aa~~g 178 (547)
||++|+||++|+++|
T Consensus 231 pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 231 PVIAGGGDQAAAALG 245 (245)
T ss_dssp EEEEEEEHHHHHHHH
T ss_pred EEEEEchHHHHhhcC
Confidence 999999999999987
No 36
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-28 Score=213.90 Aligned_cols=146 Identities=34% Similarity=0.544 Sum_probs=134.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+|++ .+| +.++|++++||++||+|||..++|+|+.|+..++..+++|++.|++|+|||.|++..+++|
T Consensus 5 ~~G~~aPdF~Lp~-~~g--~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPD-QDG--ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeec-CCC--CEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 4899999999999 888 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC------cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG------IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g------~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+|+|++.+++++||+..++.. ...|++||||++|+|++.| .......+.+++++.|+
T Consensus 82 ~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~ 153 (157)
T COG1225 82 AEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALK 153 (157)
T ss_pred HHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHH
Confidence 9988 99999999999999999999886541 2469999999999999999 45556668999999998
Q ss_pred hhH
Q psy224 510 AFQ 512 (547)
Q Consensus 510 ~l~ 512 (547)
++.
T Consensus 154 ~l~ 156 (157)
T COG1225 154 KLA 156 (157)
T ss_pred Hhc
Confidence 765
No 37
>KOG0854|consensus
Probab=99.94 E-value=1.5e-26 Score=199.73 Aligned_cols=184 Identities=33% Similarity=0.569 Sum_probs=167.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|+..+ ..| .+++-||.| -|.||+-.|+.++|+|++|+-++++++.+|.++|+..|++|+|+.++++.|
T Consensus 8 lgd~~PNfea~T-t~g---~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~W 83 (224)
T KOG0854|consen 8 LGDTVPNFEADT-TVG---KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDW 83 (224)
T ss_pred ccCcCCCccccc-ccc---ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHH
Confidence 899999999988 778 799999976 599999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCC--cceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 436 CNIPRNKGGLGD--MAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 436 ~~~~~~~~~~~~--~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.++.+.|..... ++||++.|++.+++-.|++..... +...++.||||++-+|+.++.++.+.+|+++|+|+.
T Consensus 84 i~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRv 163 (224)
T KOG0854|consen 84 IKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRV 163 (224)
T ss_pred HHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHH
Confidence 998866655444 999999999999999999885432 455789999999999999999999999999999999
Q ss_pred HHhhHhhhhcCccccCCccCCCccccc-C--ccchhcccc
Q psy224 508 VQAFQFVAEHGEVCPAGWKPGSKTMKA-D--PSGSQEYFK 544 (547)
Q Consensus 508 l~~l~~~~~~~~~~~~~w~~~~~~~~~-~--~~~~~~~~~ 544 (547)
+..||.++++++.+|.||+++++||.. . .||.+..|+
T Consensus 164 idsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp 203 (224)
T KOG0854|consen 164 IDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFP 203 (224)
T ss_pred HHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcc
Confidence 999999999999999999999999987 3 377777777
No 38
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.91 E-value=1.8e-23 Score=188.34 Aligned_cols=143 Identities=34% Similarity=0.598 Sum_probs=127.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+.+|+|++.+ .+| +.+++++++| |++||+||+++|||.|+.+++.|++++++|+++|+++++||.|+++.+++|
T Consensus 3 ~G~~~p~~~l~~-~~g--~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPD-QNG--QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW 79 (149)
T ss_pred CCCcCCCcEecC-CCC--CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence 789999999999 888 6999999999 999999999999999999999999999999999999999999999899999
Q ss_pred hhccccCCCCCCcceeeecCCC--hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKS--MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~--~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+++|.+ .++++.|++.....+...|++||||++|+|++.+.++....++..++.+.|+
T Consensus 80 ~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 80 AEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 9876 89999999987 9999999998644345567999999999999999888755666677777664
No 39
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.90 E-value=4.7e-23 Score=188.68 Aligned_cols=142 Identities=26% Similarity=0.447 Sum_probs=123.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+|||+.|||+|+.+++.|++++++|. +++|++||.|++..+++|
T Consensus 19 ~~G~~~P~f~l~~-~~g--~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVA-NDL--SDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEc-CCC--cEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHH
Confidence 4899999999999 888 68999999999999999955559999999999999999983 899999999999889999
Q ss_pred hhccccCCCCCCcc-eeeecC-CChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMA-IPILSD-KSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~-fp~l~D-~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~ 509 (547)
.+++ +++ |++++| ++.++++.||+.... .|...|++||||++|+|++.+++. .....+++++++.|+
T Consensus 94 ~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 94 CGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred HHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 9876 776 799999 456999999997543 456678999999999999999754 455568999998876
No 40
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.89 E-value=7.3e-23 Score=182.25 Aligned_cols=137 Identities=33% Similarity=0.469 Sum_probs=121.2
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhc
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
+++|+|++++ .+| +.+++++++||++||+||+++|||.|+.+++.|++++++|+++++++++|+.|+++...+|.++
T Consensus 1 ~~~p~f~l~~-~~g--~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLPD-QDG--ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccccC-CCC--CEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 3689999999 888 6999999999999999998899999999999999999999999999999999999999999987
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
+ +++||+++|++.++++.||+.... .+...|++||||++|+|++.+.+.. ..++++++++
T Consensus 78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~~ 140 (140)
T cd03017 78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVLE 140 (140)
T ss_pred h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHhC
Confidence 6 889999999999999999988531 1223499999999999999997666 6667887763
No 41
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.89 E-value=1.5e-22 Score=181.07 Aligned_cols=138 Identities=25% Similarity=0.451 Sum_probs=120.0
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+|+.+|+|++++ .+| +.+++++++||++||+||++.|||+|+.+++.|++++++|+ |+.+++||.|..+.+++|.
T Consensus 2 ~G~~aP~f~l~~-~~g--~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVT-SDL--SEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEEC-CCC--cEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHH
Confidence 689999999999 888 59999999999999999966668999999999999999984 8999999999988889998
Q ss_pred hccccCCCCCCc-ceeeecCCC-hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHH
Q psy224 437 NIPRNKGGLGDM-AIPILSDKS-MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLR 506 (547)
Q Consensus 437 ~~~~~~~~~~~~-~fp~l~D~~-~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~ 506 (547)
+++ +. +||+++|.. .+++++||+..+..+...|++||||++|+|++.+++.. ....+++++++
T Consensus 77 ~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 77 GAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred Hhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 876 54 799999986 99999999987655666799999999999999998654 34456777664
No 42
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.89 E-value=1.2e-22 Score=184.03 Aligned_cols=144 Identities=24% Similarity=0.389 Sum_probs=125.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+||++.|||.|+.+++.|.+++++|+++|+++|+|+.|++++..+|
T Consensus 5 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~ 81 (154)
T PRK09437 5 KAGDIAPKFSLPD-QDG--EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRF 81 (154)
T ss_pred CCCCcCCCcEeeC-CCC--CEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 3899999999999 888 5899999999999999997789999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C----cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g----~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++ +++||+++|+++.++++||+..... + ...|++||||++|+|++.+.+..+ .+..++++++++
T Consensus 82 ~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~~~~~~~~~~ 153 (154)
T PRK09437 82 AEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNHHDVVLDYLK 153 (154)
T ss_pred HHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCc-chhHHHHHHHHh
Confidence 9876 8899999999999999999875321 1 113789999999999999966544 446788888776
Q ss_pred h
Q psy224 510 A 510 (547)
Q Consensus 510 ~ 510 (547)
+
T Consensus 154 ~ 154 (154)
T PRK09437 154 E 154 (154)
T ss_pred C
Confidence 3
No 43
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.89 E-value=7e-23 Score=178.34 Aligned_cols=124 Identities=28% Similarity=0.513 Sum_probs=114.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
+|+++|+|++++ .+| +.+++++++||++||+||+.+|||.|..+++.|++++++|+++|+++++|+.|+.+.+++|.
T Consensus 1 vG~~~P~f~l~~-~~g--~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTD-SDG--KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEET-TTS--EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeEC-CCC--CEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 689999999999 888 69999999999999999966699999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEE
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
+++ +++||+++|++.++.+.|++.........|++||||++|+|++.
T Consensus 78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 987 89999999999999999999865444458999999999999974
No 44
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.87 E-value=8.8e-22 Score=177.64 Aligned_cols=131 Identities=24% Similarity=0.402 Sum_probs=115.4
Q ss_pred cCCCCCCeeeccccC-CceeeEeccC-CCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCc-EEEEEeCCChhhH
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 432 (547)
+|+++|+|++++ .+ |+++.+++++ ++||++||+|||+.|||+|+.| ++.|++.+++|++.|+ +|++||.|+++.+
T Consensus 1 vG~~aPdF~l~~-~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLFE-YVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEeee-eccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 589999999998 54 2226899999 5999999999999999999999 9999999999999999 6999999999999
Q ss_pred HHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecCCC
Q psy224 433 LAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++|.++. ++ +||+++|++.+++++||+..++. + ...|++|||| +|+|++.++...+
T Consensus 80 ~~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 80 KAWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred HHHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 9999986 65 89999999999999999986543 2 2479999999 7999999976654
No 45
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.87 E-value=6.2e-22 Score=177.65 Aligned_cols=130 Identities=25% Similarity=0.416 Sum_probs=112.2
Q ss_pred cCCCCCCeeecc-ccCCceeeEeccCCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQA-VVNGQFKNIKLSQYKGQYVVLFFYPLD-FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~-~~~G~~~~~~l~~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ ..+| +++++++++||++||+|| ++ |||+|..++|.+.+++++|+++++++++|+.+......+
T Consensus 2 ~G~~~P~~~~~~~~~~g--~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDG--KPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTS--EEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCeEEEeecCCC--CEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 689999999953 1667 799999999999999999 77 999999999999999999999999999999987766888
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
|.+++ +.+||++.|++.+++++|++.... .+..+|+++|||++|+|++.+.+..+
T Consensus 79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 79 FLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 88875 899999999999999999976211 12358999999999999999987776
No 46
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.86 E-value=5.4e-21 Score=170.15 Aligned_cols=134 Identities=46% Similarity=0.802 Sum_probs=116.9
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
.+|+|++.+ .+| +++++++++||++||+||+++|||+|..+++.|++++++|++.++++++|+.|+++..++|.+++
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPA-TDG--GEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceecc-CCC--cEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 369999999 888 59999999999999999999999999999999999999999889999999999988888888764
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
. +.+||++.|+++.+++.||+..... +...|++||||++|+|++.+.+..+.....+
T Consensus 78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 2 6789999999999999999885432 3346899999999999999988776443333
No 47
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.86 E-value=7.2e-21 Score=175.41 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=124.6
Q ss_pred CCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-------- 428 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-------- 428 (547)
|+.+|+|++.+ .+| +.++++++ ++|++||+|| ++|||.|..+++.|.+++++|+++++++++|+.|+
T Consensus 1 g~~~p~f~l~~-~~g--~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLPD-TDG--KTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCccccC-CCC--CEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 57899999999 888 58999998 8999999999 99999999999999999999998899999999875
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC-----CCCCHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP-----VGRSVDE 503 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~-----~~~~~~~ 503 (547)
++..++|.+++ +++||++.|++..+.+.|++. ..|++||||++|+|++....... .....++
T Consensus 77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 45566666654 889999999999999999997 47999999999999988632211 1124566
Q ss_pred HHHHHHhhH------hhhhcCccccCCc
Q psy224 504 TLRLVQAFQ------FVAEHGEVCPAGW 525 (547)
Q Consensus 504 il~~l~~l~------~~~~~~~~~~~~w 525 (547)
+.++|+++. .....+.+|+++|
T Consensus 144 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 144 LRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred HHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 777776644 3344588999998
No 48
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.85 E-value=1.2e-20 Score=178.31 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=119.3
Q ss_pred cEEEeccchhhhhhccc------ccc-------cccchhH---HHHHhHHHHHHHHhCCC-----Cchh--HHHHHHHhc
Q psy224 186 AIVNISTSAQIAFIDEM------GAS-------MNGGNCL---ATFVCTLQNWFKEFGFN-----VPQN--QIWAKLINA 242 (547)
Q Consensus 186 ~~is~GTs~~~~~~~~~------~~~-------~~gg~~~---~~~~g~~~~w~~~~~~~-----~~~~--~~~~~~~~~ 242 (547)
+++|+|||+++.++++. +.. ..+.+.+ ...+|.+++|+++.+.. .... +.++....
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEA- 79 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHH-
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHh-
Confidence 47899999999766321 100 0111221 24567778999998521 1111 22222111
Q ss_pred cCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhc-C--CcE
Q psy224 243 SDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRS-G--INR 316 (547)
Q Consensus 243 ~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~-g--~~~ 316 (547)
...++++++++|+|++.|+|.|.+++ ++|.|++.++ ++.+++||++||++|.+|++++ .+++. + +++
T Consensus 80 ----~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~-~~~~~~rAv~Egia~~~~~~~~--~l~~~~~~~~~~ 152 (198)
T PF02782_consen 80 ----AASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDT-TRADLARAVLEGIAFSLRQILE--ELEELTGIPIRR 152 (198)
T ss_dssp ----HHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTT-SHHHHHHHHHHHHHHHHHHHHH--HHHHHHTSCESE
T ss_pred ----hhccCcccceeeeeccccCcccccccccccccccCCccc-CHHHHHHHHHHhHHHHHHHhhh--hcccccccccee
Confidence 12346778999999999999999886 7999999987 8999999999999999999999 47664 4 789
Q ss_pred EEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhh
Q psy224 317 IIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDAS 354 (547)
Q Consensus 317 I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~ 354 (547)
|+++||+ +||+.|+|++||++++||.+....+..+.+
T Consensus 153 i~~~GG~-~~n~~~~q~~Advl~~~V~~~~~~e~~a~G 189 (198)
T PF02782_consen 153 IRVSGGG-AKNPLWMQILADVLGRPVVRPEVEEASALG 189 (198)
T ss_dssp EEEESGG-GGSHHHHHHHHHHHTSEEEEESSSTHHHHH
T ss_pred eEecccc-ccChHHHHHHHHHhCCceEeCCCCchHHHH
Confidence 9999998 999999999999999999999876655433
No 49
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.84 E-value=2.2e-20 Score=168.02 Aligned_cols=124 Identities=21% Similarity=0.320 Sum_probs=108.4
Q ss_pred CCCCeeeccccCCceeeEeccCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYK-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
.+|+|++++ .+| +.+++++++ +|++||+||+++|||+|..+++.|++++++|+++|+++++|+.|..+...+|.++
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELPD-AGG--ETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCccccC-CCC--CEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 378999999 888 589999985 5788888888999999999999999999999999999999999988777778776
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccC-----------------------CCcceeEEEEEcCCCcEEEEEec
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-----------------------TGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-----------------------~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
. +++||+++|++.++.+.||+.... .+...|++||||++|+|++.+++
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 5 899999999999999999985322 12458999999999999999864
No 50
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.83 E-value=3.5e-20 Score=176.52 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=110.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
..|+.+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++|
T Consensus 74 ~~g~~aPdF~l~d-~~G--~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 74 ATEKSVHDFTVKD-IDG--KDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 149 (236)
T ss_pred hcCCCCCceEEEC-CCC--CEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Confidence 3788999999999 899 699999999999999999 9999999999999999999999999999999974
Q ss_pred ChhhHHHHh-hccccCCCCCCcceeeecC--CCh-HHHHHhCCcccC-------CCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 428 SHFSHLAWC-NIPRNKGGLGDMAIPILSD--KSM-SIARSYGVLNEE-------TGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 428 ~~~~~~~~~-~~~~~~~~~~~~~fp~l~D--~~~-~~~~~~~v~~~~-------~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+.++..+|. +++ +++||++.| .++ .+++.|++.... .-...|++||||++|+|++.+.+..+
T Consensus 150 s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~ 222 (236)
T PLN02399 150 SNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTS 222 (236)
T ss_pred CHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCC
Confidence 334566765 344 899999864 333 555666532110 01236999999999999999976653
Q ss_pred CCCCHHHHHHHHHhh
Q psy224 497 VGRSVDETLRLVQAF 511 (547)
Q Consensus 497 ~~~~~~~il~~l~~l 511 (547)
.+++.+.|+++
T Consensus 223 ----~~~le~~I~~l 233 (236)
T PLN02399 223 ----PFQIEKDIQKL 233 (236)
T ss_pred ----HHHHHHHHHHH
Confidence 34555555544
No 51
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.83 E-value=1.9e-20 Score=163.56 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=98.7
Q ss_pred ccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC------CChhhHHHHhhccccC
Q psy224 369 VVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST------DSHFSHLAWCNIPRNK 442 (547)
Q Consensus 369 ~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~------d~~~~~~~~~~~~~~~ 442 (547)
|.+++ +++++++++||++||+|| ++|||+|..++|.|++++++|+++++++++|+. ++.++.++|.+++
T Consensus 9 w~~~~-~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~--- 83 (126)
T cd03012 9 WLNTD-KPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY--- 83 (126)
T ss_pred hhcCC-CccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc---
Confidence 34442 589999999999999999 999999999999999999999999999999986 3456777778776
Q ss_pred CCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 443 GGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 443 ~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+++||++.|++.++++.|++. .+|++||||++|+|++++.|+
T Consensus 84 ----~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 ----GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred ----CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 899999999999999999987 489999999999999999764
No 52
>PLN02412 probable glutathione peroxidase
Probab=99.83 E-value=2.3e-20 Score=170.83 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=107.1
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~ 430 (547)
..+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|+.|+ .+
T Consensus 7 ~~~pdf~l~d-~~G--~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKD-IGG--NDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEEC-CCC--CEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 5789999999 899 689999999999999999 99999999999999999999999999999999753 22
Q ss_pred hH-HHHhhccccCCCCCCcceeeecC--CC-hHHHHHhCCcccCC-------CcceeEEEEEcCCCcEEEEEecCCCCCC
Q psy224 431 SH-LAWCNIPRNKGGLGDMAIPILSD--KS-MSIARSYGVLNEET-------GIPYRGLFIIDDKQNLRQITINDLPVGR 499 (547)
Q Consensus 431 ~~-~~~~~~~~~~~~~~~~~fp~l~D--~~-~~~~~~~~v~~~~~-------g~~~p~~~lid~~G~v~~~~~~~~~~~~ 499 (547)
.. +.|.+++ +++||++.| .+ ....+.|++...+. -...|++||||++|+|++++.+..+.
T Consensus 83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~-- 153 (167)
T PLN02412 83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSP-- 153 (167)
T ss_pred HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCH--
Confidence 33 3334554 899999874 44 36667776432110 11368999999999999999777643
Q ss_pred CHHHHHHHHHhh
Q psy224 500 SVDETLRLVQAF 511 (547)
Q Consensus 500 ~~~~il~~l~~l 511 (547)
+++.+.++++
T Consensus 154 --~~l~~~i~~~ 163 (167)
T PLN02412 154 --LKIEKDIQNL 163 (167)
T ss_pred --HHHHHHHHHH
Confidence 3444444443
No 53
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.83 E-value=4.5e-20 Score=173.25 Aligned_cols=129 Identities=9% Similarity=0.096 Sum_probs=102.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------CC
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------DS 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d~ 428 (547)
.+..+|+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++ ++
T Consensus 15 ~~~~~pdf~l~d-~~G--~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~ 90 (199)
T PTZ00056 15 LRKSIYDYTVKT-LEG--TTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPN 90 (199)
T ss_pred cCCCCCceEEEC-CCC--CEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCC
Confidence 678899999999 889 699999999999999999 999999999999999999999999999999996 34
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCC------ChHHHHH--------hCCcccCCCc-ceeEEEEEcCCCcEEEEEec
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDK------SMSIARS--------YGVLNEETGI-PYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~------~~~~~~~--------~~v~~~~~g~-~~p~~~lid~~G~v~~~~~~ 493 (547)
+++.++|.+++ +++||+++|. ...+.+. |+........ ..|++||||++|+|++.+.+
T Consensus 91 ~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 91 TKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred HHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCC
Confidence 56778888766 8999998762 2233222 2221110011 12589999999999999966
Q ss_pred CCC
Q psy224 494 DLP 496 (547)
Q Consensus 494 ~~~ 496 (547)
..+
T Consensus 164 ~~~ 166 (199)
T PTZ00056 164 RTE 166 (199)
T ss_pred CCC
Confidence 554
No 54
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.83 E-value=2.4e-20 Score=168.61 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------CChhhHH
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------DSHFSHL 433 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d~~~~~~ 433 (547)
-+|++++ .+| +.+++++++||++||+|| ++|||+|..++|.|++++++|+++|++|++|++ |+.+.++
T Consensus 3 ~~f~l~~-~~G--~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKD-ARG--RTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeEC-CCC--CEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 4789998 889 699999999999999999 999999999999999999999999999999995 4567778
Q ss_pred HHhhc-cccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeE----EEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 434 AWCNI-PRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRG----LFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 434 ~~~~~-~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~----~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+|.++ + +++||+++|. +......|+......+ ..|+ +||||++|+|++.+.++.+ .+++.
T Consensus 79 ~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~~-~~p~~~~~tflID~~G~v~~~~~g~~~----~~~l~ 146 (153)
T TIGR02540 79 SFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWRPEEP----VEEIR 146 (153)
T ss_pred HHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcCC-CCCCCccEEEEEcCCCcEEEEECCCCC----HHHHH
Confidence 88864 4 8999999872 2233333332211111 2455 9999999999999976653 45555
Q ss_pred HHHHh
Q psy224 506 RLVQA 510 (547)
Q Consensus 506 ~~l~~ 510 (547)
+.|++
T Consensus 147 ~~i~~ 151 (153)
T TIGR02540 147 PEITA 151 (153)
T ss_pred HHHHH
Confidence 55554
No 55
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.82 E-value=1.6e-20 Score=169.57 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhH
Q psy224 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSH 432 (547)
Q Consensus 361 ~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~ 432 (547)
+|+|++++ .+| +.+++++++||++||+|| ++||| |..++|.|++++++|+++|++|++|+.++ ++.+
T Consensus 2 ~~~f~l~d-~~G--~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKD-IDG--EPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEEC-CCC--CEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 68999999 899 699999999999999999 99999 99999999999999999999999998743 4667
Q ss_pred HHHhhc-cccCCCCCCcceeeecCC--ChH-HHHHhCCcccCC-------CcceeEEEEEcCCCcEEEEEecCCC
Q psy224 433 LAWCNI-PRNKGGLGDMAIPILSDK--SMS-IARSYGVLNEET-------GIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~fp~l~D~--~~~-~~~~~~v~~~~~-------g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++|.++ + +++||++.|. +.. ..+.|++..... ....|++||||++|+|++.+.|..+
T Consensus 77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 788875 4 8899999864 222 455565321100 0013489999999999999987764
No 56
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.81 E-value=8.4e-20 Score=170.16 Aligned_cols=124 Identities=17% Similarity=0.246 Sum_probs=105.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~ 433 (547)
.+|+++|+|++++ .+|+++.++++++ +||++||+|| ++|||+|+.++|.|.+++ +++++|++|+.+ +.++..
T Consensus 40 ~~g~~~p~f~l~~-~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 40 LIGKPVPKFRLES-LENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hcCCCCCCcCCcc-CCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHHH
Confidence 3799999999999 7753356777766 7999999999 999999999999998765 358999999975 456778
Q ss_pred HHhhccccCCCCCCcceee-ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC
Q psy224 434 AWCNIPRNKGGLGDMAIPI-LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~-l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~ 498 (547)
+|.+++ +++||+ +.|++.++.+.|++. ..|++||||++|+|++++.|+.+..
T Consensus 114 ~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~~~~ 166 (185)
T PRK15412 114 SWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLNPR 166 (185)
T ss_pred HHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCCCHH
Confidence 888876 889984 789999999999988 5899999999999999998877544
No 57
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.81 E-value=1.3e-19 Score=168.53 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=97.6
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEE-EEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-------
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVV-LFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~l-l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------- 428 (547)
.++.+|+|++++ .+| +.+++++++||++| +++| ++|||+|..++|.|++++++|+++|++|++|++|+
T Consensus 16 ~~~~~p~f~l~d-~~G--~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAID-IDG--QLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeEc-CCC--CEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 456789999999 889 69999999999654 5567 99999999999999999999999999999999753
Q ss_pred -hhhHHHHhh-ccccCCCCCCcceeeecC--CChHH-HHHhCCcccCC---------Cccee---EEEEEcCCCcEEEEE
Q psy224 429 -HFSHLAWCN-IPRNKGGLGDMAIPILSD--KSMSI-ARSYGVLNEET---------GIPYR---GLFIIDDKQNLRQIT 491 (547)
Q Consensus 429 -~~~~~~~~~-~~~~~~~~~~~~fp~l~D--~~~~~-~~~~~v~~~~~---------g~~~p---~~~lid~~G~v~~~~ 491 (547)
.++..+|.. ++ +++||++.| .++.. .+.|+...... ...+| ++||||++|+|++.+
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 244555643 33 899999965 33322 33442111110 11356 579999999999999
Q ss_pred ecCCCCC
Q psy224 492 INDLPVG 498 (547)
Q Consensus 492 ~~~~~~~ 498 (547)
.+..+..
T Consensus 165 ~g~~~~~ 171 (183)
T PTZ00256 165 SPKVNPN 171 (183)
T ss_pred CCCCCHH
Confidence 8766433
No 58
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=4.9e-19 Score=163.53 Aligned_cols=134 Identities=22% Similarity=0.414 Sum_probs=117.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~ 435 (547)
+|..+|+|++.+ .+| +.+++++++||+++|+|| ++|||.|+.+++.|.+++++|++.++++++|+.|. .+..++|
T Consensus 37 ~g~~~p~~~~~~-~~g--~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 37 VGKEAPNFVLTD-LEG--KKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNF 112 (173)
T ss_pred CCCCCCCcEeec-CCC--CEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHH
Confidence 899999999999 888 589999999999999999 99999999999999999999998899999999975 4566788
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+++ +++||++.|.+.++.+.|++. ..|++|+||++|+|++.+.|..+ .+++.+.|+++
T Consensus 113 ~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~~----~~~l~~~l~~~ 171 (173)
T PRK03147 113 VNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEMT----EEQLEEYLEKI 171 (173)
T ss_pred HHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCCC----HHHHHHHHHHh
Confidence 8766 889999999999999999997 48999999999999999876664 34444444443
No 59
>KOG0855|consensus
Probab=99.79 E-value=9e-19 Score=150.40 Aligned_cols=145 Identities=31% Similarity=0.485 Sum_probs=130.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+.+|||+|.| .+| ++|+|.++.| |++|++|||+..+|+|+.|...+..-|++|++.+.+|+++|.|+...+++
T Consensus 64 ~~Gd~iPD~tL~d-edg--~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKa 140 (211)
T KOG0855|consen 64 NKGDAIPDFTLKD-EDG--KSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKA 140 (211)
T ss_pred ecCCcCCCccccc-CCC--CeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHH
Confidence 3899999999999 899 6999999977 59999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccC-CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|..+. +++|.+|+|+..++.+.+|+..+. .|.+.+.+||+|+.|.........+.+..++++.++.|.+
T Consensus 141 F~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 141 FASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred hhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 99876 999999999999999999999854 4667899999998887777776677777789998888764
No 60
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.79 E-value=1.1e-18 Score=163.09 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=107.1
Q ss_pred cCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
+|+++|+|++++ .+| +.++++ +++||++||+|| ++|||+|+.++|.+++++++ .++++++|+.+++++.++
T Consensus 48 vG~~aP~f~l~d-~~G--~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~ 120 (189)
T TIGR02661 48 VGDAAPIFNLPD-FDG--EPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR 120 (189)
T ss_pred CCCcCCCcEecC-CCC--CEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence 899999999999 899 689994 569999999999 99999999999999998765 378899999888888899
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
|.+++ +++|+.+. .++++.+.|++. ..|++||||++|+|++.. .....+++++++++++
T Consensus 121 ~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 121 FLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR 179 (189)
T ss_pred HHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence 99876 67776544 468899999987 489999999999999864 3333334666665543
No 61
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.78 E-value=8.2e-19 Score=153.42 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=103.5
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~~~~~~ 438 (547)
++|+|++++ .+|+.+.+++++++||++||+|| ++|||+|..++|.|+++.+++ +++|++|+. +..++.++|.++
T Consensus 2 ~~p~f~~~~-~~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPA-LPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCccccc-ccCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHh
Confidence 579999999 77743589999999999999999 999999999999999988765 599999996 466777888877
Q ss_pred cccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 439 PRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 439 ~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+ +++|+ ++.|.+.++++.|++. .+|++|+||++|+|++.+.|..+
T Consensus 77 ~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 77 H-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred c-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEeccCC
Confidence 5 77886 6689999999999998 48999999999999999987665
No 62
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.78 E-value=1.7e-18 Score=159.60 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=107.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~ 433 (547)
.+|..+|+|++++ .+|+.+.++++++ +||+++|+|| ++|||+|+.++|.++++++ +++++++|+.+. .++..
T Consensus 35 ~vG~~ap~f~l~~-~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAA-LREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccc-cCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChHHHH
Confidence 4899999999999 8884335666676 7999999999 9999999999999887654 489999999754 45566
Q ss_pred HHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 434 AWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|.+++ +++|| ++.|+++++.+.|++. ..|++|+||++|+|++.+.|..+ .+++.+.+++
T Consensus 109 ~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~ 169 (173)
T TIGR00385 109 KFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPLN----NEVWTEGFLP 169 (173)
T ss_pred HHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence 787765 88998 5689999999999997 48999999999999999987664 3444444443
No 63
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.75 E-value=4.2e-18 Score=150.25 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=85.2
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-------CcEEEEEeCCCh-hhHHHHhhccccCCCCCC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-------NTQVIACSTDSH-FSHLAWCNIPRNKGGLGD 447 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-------~~~vi~is~d~~-~~~~~~~~~~~~~~~~~~ 447 (547)
.+++++++||+++|+|| |+|||+|+.++|.|.+++++++++ +++|++||.|.. ++.++|.++. +
T Consensus 17 ~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~-------~ 88 (146)
T cd03008 17 REIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM-------P 88 (146)
T ss_pred cccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------C
Confidence 56889999999999999 999999999999999999988754 699999999854 4466777765 6
Q ss_pred cce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 448 MAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 448 ~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
++| |+..+.+.++++.|++. .+|++||||++|+|+...
T Consensus 89 ~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 89 KKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence 555 33333346899999997 589999999999999775
No 64
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.75 E-value=1.1e-17 Score=149.16 Aligned_cols=121 Identities=20% Similarity=0.323 Sum_probs=102.8
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhCC---cEEEEEeCCC----hhh
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKIN---TQVIACSTDS----HFS 431 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~~---~~vi~is~d~----~~~ 431 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++||+. |..+++.|++++++|++++ +++++|+.|+ ++.
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTD-QDG--RPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEc-CCC--CEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 478999999 888 689999999999999999 999997 9999999999999998865 9999999865 466
Q ss_pred HHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCCC-------c-ceeEEEEEcCCCcEEEEE
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEETG-------I-PYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~g-------~-~~p~~~lid~~G~v~~~~ 491 (547)
+++|.+++ +.+|+++.|++ ..+++.||+...... . ..|++||||++|+|++.+
T Consensus 77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 77777765 78999999875 799999998753210 0 146899999999999987
No 65
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.75 E-value=1.6e-17 Score=142.35 Aligned_cols=110 Identities=16% Similarity=0.269 Sum_probs=95.3
Q ss_pred CCeeeccccCCceeeEeccCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccc
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYK-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPR 440 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 440 (547)
|+|++.+ .+| +.+++++++ ||++||+|| ++|||+|+.++|.++++++++++ ++.+++++.+..++..+|.+++
T Consensus 1 p~f~l~~-~~G--~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDLTT-IDG--APVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCceeec-CCC--CEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence 7899999 888 589999997 999999999 99999999999999999888754 6888888866777888888876
Q ss_pred cCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 441 NKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 441 ~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
++ .||++.+ ..+.+.|++. ..|++||||++|+|++..
T Consensus 75 ------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 ------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred ------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 66 4888874 5688999987 489999999999999864
No 66
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.73 E-value=1.7e-17 Score=151.57 Aligned_cols=140 Identities=11% Similarity=0.176 Sum_probs=106.9
Q ss_pred cCCCCCCeeeccc----cCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEE------EE
Q psy224 357 LEKPAPEFEGQAV----VNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQV------IA 423 (547)
Q Consensus 357 ~g~~~p~~~l~~~----~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~v------i~ 423 (547)
+|.++|.+++.+- .+|+ .+.++.++++||+.||+|| |+||++|+.++|.|.++ +++|+.+ ++
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~ 99 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTI 99 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccceEE
Confidence 8999999887761 1221 3567888899999999999 99999999999999988 4558888 99
Q ss_pred EeCCC-hhhHHHHhhccccCCCCCCccee---eecCCChHHHHHhCCcccCCCcceeEE-EEEcCCCcEEEEEecCCCCC
Q psy224 424 CSTDS-HFSHLAWCNIPRNKGGLGDMAIP---ILSDKSMSIARSYGVLNEETGIPYRGL-FIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 424 is~d~-~~~~~~~~~~~~~~~~~~~~~fp---~l~D~~~~~~~~~~v~~~~~g~~~p~~-~lid~~G~v~~~~~~~~~~~ 498 (547)
|+.|. ......|.+.+.+. .+..|| ++.|.++.+...|++. ..|++ ||||++|+|++.+.|..+..
T Consensus 100 IN~dd~~~~~~~fVk~fie~---~~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l~~e 170 (184)
T TIGR01626 100 INADDAIVGTGMFVKSSAKK---GKKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVKEGALSDS 170 (184)
T ss_pred EECccchhhHHHHHHHHHHH---hcccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEEeCCCCHH
Confidence 99885 33333444322111 155666 8999999999999998 47887 99999999999999887644
Q ss_pred CCHHHHHHHHHhh
Q psy224 499 RSVDETLRLVQAF 511 (547)
Q Consensus 499 ~~~~~il~~l~~l 511 (547)
.+++++..++++
T Consensus 171 -e~e~~~~li~~l 182 (184)
T TIGR01626 171 -DIQTVISLVNGL 182 (184)
T ss_pred -HHHHHHHHHHHH
Confidence 456667766654
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=167.94 Aligned_cols=130 Identities=16% Similarity=0.298 Sum_probs=108.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------hh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------HF 430 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------~~ 430 (547)
.++++|+|++.| .+| +.++++ +||++||+|| |+|||+|..++|.|.+++++++..+++||+|+.+. ..
T Consensus 34 ~~~~lP~f~l~D-~dG--~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 34 VPHTLSTLKTAD-NRP--ASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccCCCCCeEeec-CCC--ceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 667899999999 888 578887 8999999999 99999999999999999999988889999998732 23
Q ss_pred hHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 431 SHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+..+|.+.. ++ ++|++.|.+.++++.|++. .+|+++|||++|+|+..+.|..+ .+++.+.|+
T Consensus 108 ~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSIS----EAQALALIR 170 (521)
T ss_pred HHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCCC----HHHHHHHHH
Confidence 344555433 33 6899999999999999998 59999999999999999988775 345555444
No 68
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.71 E-value=6.9e-17 Score=148.60 Aligned_cols=138 Identities=9% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------Chh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------SHF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~~~ 430 (547)
..+++|++.+ .+| +.++|++|+||++||+|| |+||+.|. +++.|++++++|+++|++|++|+++ +.+
T Consensus 3 ~~~~~f~~~~-~~G--~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTT-IDG--EVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeEC-CCC--CEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 3578999999 899 699999999999999999 99999885 8999999999999999999999984 446
Q ss_pred hHHHHhh-ccccCCCCCCcceeeecCCC------hHHHHHhCCccc------------------------CCCcceeEEE
Q psy224 431 SHLAWCN-IPRNKGGLGDMAIPILSDKS------MSIARSYGVLNE------------------------ETGIPYRGLF 479 (547)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~fp~l~D~~------~~~~~~~~v~~~------------------------~~g~~~p~~~ 479 (547)
++++|++ ++ +++||++.+.+ ..+.+.+.-... ..-...-+.|
T Consensus 78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF 150 (183)
T PRK10606 78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF 150 (183)
T ss_pred HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence 6778876 34 89999995432 223333321100 0001123599
Q ss_pred EEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 480 IIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 480 lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|||++|+++.++.....+ .-.++.++|++
T Consensus 151 Lv~~~G~vv~r~~~~~~p--~~~~i~~~i~~ 179 (183)
T PRK10606 151 LVGRDGQVIQRFSPDMTP--EDPIVMESIKL 179 (183)
T ss_pred EECCCCcEEEEECCCCCC--CHHHHHHHHHH
Confidence 999999999999433322 22334445443
No 69
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.69 E-value=1.9e-16 Score=134.83 Aligned_cols=113 Identities=25% Similarity=0.441 Sum_probs=102.3
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHHHHhhccc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHLAWCNIPR 440 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~~~~~~~~ 440 (547)
+|++.+ .+| +.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ ++..+++.+++
T Consensus 1 ~~~~~~-~~g--~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSLPD-LDG--KPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred CccccC-CCC--CEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 466777 788 589999999999999999 99999999999999999999987789999999998 78888888776
Q ss_pred cCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 441 NKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 441 ~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
+.+|+++.|.+.++.+.|++. ..|+++|+|++|+|++.+.
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 ------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence 789999999999999999997 4899999999999998874
No 70
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.67 E-value=2.2e-16 Score=137.11 Aligned_cols=112 Identities=18% Similarity=0.330 Sum_probs=98.6
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHHHHhhcc
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHLAWCNIP 439 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~~~~~~~ 439 (547)
|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++ +++++|+.|+ .+..++|.+++
T Consensus 1 p~f~l~~-~~g--~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATT-LDG--EQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeec-CCC--CEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 7899999 888 589999999999999999 99999999999999999876 5778888764 56777888776
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+++||++.|+++++.+.|++. ..|+.+|+|++| +++.+.|..+
T Consensus 72 -------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 72 -------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred -------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccCC
Confidence 889999999999999999997 589999999999 9988866554
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.66 E-value=2.7e-16 Score=138.18 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=86.6
Q ss_pred ccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh-hhHHHHhhccccCC
Q psy224 367 QAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH-FSHLAWCNIPRNKG 443 (547)
Q Consensus 367 ~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~~~~~ 443 (547)
.+ .+| +.+++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ++.+++.++...
T Consensus 4 ~~-~~G--~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~-- 77 (131)
T cd03009 4 LR-NDG--GKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW-- 77 (131)
T ss_pred cc-cCC--CCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCe--
Confidence 35 677 699999999999999999 999999999999999999999865 799999999864 333444443210
Q ss_pred CCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 444 GLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 444 ~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
..++|+. .|.+..+++.|++. .+|+++|||++|+|+...
T Consensus 78 --~~~~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 --LAVPFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred --eEcccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 0233332 34557899999997 489999999999999766
No 72
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.65 E-value=7.6e-16 Score=135.51 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=87.1
Q ss_pred cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh-hhHHHHhhccccCCCCC
Q psy224 370 VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH-FSHLAWCNIPRNKGGLG 446 (547)
Q Consensus 370 ~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~~~~~~~~ 446 (547)
++|+ +++++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ...++|.+++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------- 74 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------- 74 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------
Confidence 4565 589999999999999999 999999999999999999999875 799999999853 5667777765
Q ss_pred Ccceeee--cC--CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 447 DMAIPIL--SD--KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 447 ~~~fp~l--~D--~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+ +++.+ .| ....+.+.|++. .+|+++|||++|+|++..
T Consensus 75 ~-~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 75 P-PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred C-CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 3 33332 33 235778889987 589999999999999776
No 73
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.63 E-value=1.2e-15 Score=175.84 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=110.3
Q ss_pred cCCCCCCeeecc-ccCCceeeEec-cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC---CC---
Q psy224 357 LEKPAPEFEGQA-VVNGQFKNIKL-SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST---DS--- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~-~~~G~~~~~~l-~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~---d~--- 428 (547)
.|.++|+|...+ +.+| +++++ ++++||++||+|| ++||++|+.++|.|++++++|++++++|++|+. |.
T Consensus 393 ~g~~~p~f~~~~~~~~g--~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNT--APLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCC--ccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccccc
Confidence 788999999875 3567 58888 6899999999999 999999999999999999999998999999984 32
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.++.+++.+++ +++||++.|.+.++++.|++. .+|+++|||++|+|+..+.|+.... .++++++.
T Consensus 470 ~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~~~~~-~l~~~l~~ 534 (1057)
T PLN02919 470 LEAIRNAVLRY-------NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGEGHRK-DLDDLVEA 534 (1057)
T ss_pred HHHHHHHHHHh-------CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecccCHH-HHHHHHHH
Confidence 23344555544 899999999999999999987 5899999999999999987765322 34444443
No 74
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.61 E-value=3.1e-15 Score=135.83 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=87.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
.....|+|++.+ | +.+++++++ ||+|| ++|||+|+.++|.|++++++| ++.|++|+.|...
T Consensus 51 ~~~~~~~f~l~d---G--~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------ 111 (181)
T PRK13728 51 EKPAPRWFRLSN---G--RQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------ 111 (181)
T ss_pred CCCCCCccCCCC---C--CEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC------
Confidence 444678898864 8 699999997 78899 999999999999999999997 7999999987421
Q ss_pred hccccCCCCCCcceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCC
Q psy224 437 NIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLP 496 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~ 496 (547)
...||++.| ....+.+.|++.. ..+|++||||++|+++ ..++|..+
T Consensus 112 ----------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 ----------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred ----------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCCC
Confidence 358999885 5677888899521 1589999999999996 57878775
No 75
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.51 E-value=3.7e-14 Score=117.10 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCCh-hhHHHHhhccccCCCCCCcceee---ecCCCh
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSH-FSHLAWCNIPRNKGGLGDMAIPI---LSDKSM 458 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~-~~~~~~~~~~~~~~~~~~~~fp~---l~D~~~ 458 (547)
||+++|+|| ++||++|..++|.|.+++++|+ +.++++|+||.|.. ++.+++.++. +.+++. ..+...
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN-------NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC-------TTSSEEEETTTHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc-------CCCceEEeeCcchHH
Confidence 799999999 9999999999999999999999 67899999999853 4445555543 344444 333458
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcE
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
++.+.|++. .+|+++|+|++|+|
T Consensus 73 ~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-T------SSSEEEEEETTSBE
T ss_pred HHHHHCCCC------cCCEEEEECCCCCC
Confidence 899999998 58999999999987
No 76
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-12 Score=111.00 Aligned_cols=125 Identities=26% Similarity=0.468 Sum_probs=111.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+. +.+++++++||..||..||+=.+|.|-.+...+++...++. ++.|+.||.|-|+.+.+|
T Consensus 19 ~vGd~ap~ftl~~-~dL--~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVG-KDL--NDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred ccCCcCCceEEEc-Ccc--cceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 3999999999988 666 68999999999999999999999999999999999988886 599999999999999999
Q ss_pred hhccccCCCCCCcc-eeeecCC-ChHHHHHhCCcccCC---CcceeEEEEEcCCCcEEEEEe
Q psy224 436 CNIPRNKGGLGDMA-IPILSDK-SMSIARSYGVLNEET---GIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 436 ~~~~~~~~~~~~~~-fp~l~D~-~~~~~~~~~v~~~~~---g~~~p~~~lid~~G~v~~~~~ 492 (547)
+... ++. ...++|. +.++.++||+...+. |+..|+.|++|.+|+|.|..+
T Consensus 94 C~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 94 CGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 9876 665 7788885 477999999987665 787899999999999999884
No 77
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.1e-12 Score=110.87 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=94.1
Q ss_pred CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhH
Q psy224 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSH 432 (547)
Q Consensus 361 ~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~ 432 (547)
+-+|++.+ .+| ++++|++|+||++||+-- |+.|..-+ ++..|+++|++|+++|+.|+++.+++ .+++
T Consensus 5 ~yd~~~~~-~~G--~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKD-IDG--EPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeec-cCC--CCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 44788888 899 699999999999999999 99997666 99999999999999999999999865 3677
Q ss_pred HHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCccc--------CCCcceeEEEEEcCCCcEEEEEe
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNE--------ETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~--------~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.+|++. +| ++.||++...+ ...+..|..... +.-...-+.||||++|+|+.++.
T Consensus 80 ~~fC~~--~Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 80 AKFCQL--NY----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHHHHh--cc----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 888874 45 99999987532 222222322211 11123467999999999999994
No 78
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.38 E-value=2.9e-12 Score=114.60 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=67.1
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
+.++++++ .||+|| ++|||+|+.++|.|++++++| +++|++|+.|.... -.||...
T Consensus 45 ~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~~~ 100 (153)
T TIGR02738 45 RHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPDPL 100 (153)
T ss_pred hhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccccc
Confidence 45665554 499999 999999999999999999887 68999999875321 1344444
Q ss_pred CCChHHH-HHh---CCcccCCCcceeEEEEEcCCCcE-EEEEecCCC
Q psy224 455 DKSMSIA-RSY---GVLNEETGIPYRGLFIIDDKQNL-RQITINDLP 496 (547)
Q Consensus 455 D~~~~~~-~~~---~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~ 496 (547)
|.+.... +.| ++. .+|++||||++|++ +..+.|..+
T Consensus 101 ~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 101 PATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred CCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeecccC
Confidence 4443443 445 554 58999999999886 446777664
No 79
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.34 E-value=3.5e-12 Score=117.33 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=92.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCC-CCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCCh----
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFT-FVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSH---- 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~c-p~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~---- 429 (547)
.....|+|+|.| .+| +.+++++++||++||+|. .+.| ..|+..+..|+++++++.+. .++++.||.||.
T Consensus 28 ~~~~~~~f~L~d-~~G--~~~~~~~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTD-QDG--KTVTLDDLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EEEE-TTS--SEEEGGGGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEEEc-CCC--CEecHHHhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 344678999999 999 699999999999999999 5555 59999999999999999864 699999999875
Q ss_pred hhHHHHhhccccCCCCCCcceeeec---CCChHHHHHhCCcccCC------C--c--ceeEEEEEcCCCcEEEEEe
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILS---DKSMSIARSYGVLNEET------G--I--PYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~---D~~~~~~~~~~v~~~~~------g--~--~~p~~~lid~~G~v~~~~~ 492 (547)
+.+++|.+.+ +.+|..+. +.-.++++.|++...+. + . -...++||||+|+++..+.
T Consensus 104 ~~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 104 EVLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4555666554 44444433 33377889999774321 0 0 0245899999999999984
No 80
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.31 E-value=2.1e-11 Score=114.98 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=105.9
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCC-CCcHHHHHHHHHHHHHHh---hCCcEEEEEeCCChhhHHHHhhc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFT-FVCPTEIIAFSDRAEEFK---KINTQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~c-p~C~~~~~~l~~~~~~~~---~~~~~vi~is~d~~~~~~~~~~~ 438 (547)
+|++.+ .+| +.+++.+++||+.||+|. .+.| ..|+.++..|.++++++. ..+++++.||+|+..+..+..++
T Consensus 49 ~f~l~d-~~G--~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFELTD-QDG--KPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceeeec-CCC--CEeeccccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 799999 899 699999999999999999 5555 599999999999999998 45689999999998777776666
Q ss_pred ccc-CCCCCCcceeeecC---CChHHHHHhCCcccCC---C--cc----eeEEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 439 PRN-KGGLGDMAIPILSD---KSMSIARSYGVLNEET---G--IP----YRGLFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 439 ~~~-~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~---g--~~----~p~~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+.. ++ ...|..+.. ...+++++|++..... + .. ....||||++|+++..+.+..+ .++++
T Consensus 125 Y~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~ 197 (207)
T COG1999 125 YAELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIA 197 (207)
T ss_pred HhcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHH
Confidence 655 33 334544443 3489999999985221 1 00 1358999999999999954443 57777
Q ss_pred HHHHhhH
Q psy224 506 RLVQAFQ 512 (547)
Q Consensus 506 ~~l~~l~ 512 (547)
+.|+.+-
T Consensus 198 ~~l~~l~ 204 (207)
T COG1999 198 ADLKKLL 204 (207)
T ss_pred HHHHHHh
Confidence 7777653
No 81
>KOG2792|consensus
Probab=99.24 E-value=2.2e-11 Score=113.25 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=100.7
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhC-C--cEEEEEeCCChhhHHHHhhc
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKI-N--TQVIACSTDSHFSHLAWCNI 438 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~-~--~~vi~is~d~~~~~~~~~~~ 438 (547)
.|+|.| .+| +.++-.+|+|||+||||. .+.|| .|+.|+..|.+..+++.++ + +..++|++|+..+..+-+.+
T Consensus 121 pF~L~d-~~G--k~~te~df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e 196 (280)
T KOG2792|consen 121 PFSLVD-HDG--KRVTEKDFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE 196 (280)
T ss_pred ceEEEe-cCC--CeecccccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence 699999 999 699999999999999999 66665 9999999999999999864 3 44789999885444433333
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccCC------Ccc---eeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEET------GIP---YRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~---~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+-+-|+.+-+.+..-.+.-..+++.|.|++... ... .=.+|||||+|+++.-+ |. .++.+++.+.+
T Consensus 197 Y~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~-Gr---N~~~~~~~~~I 271 (280)
T KOG2792|consen 197 YVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY-GR---NYDADELADSI 271 (280)
T ss_pred HHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh-cc---cCCHHHHHHHH
Confidence 333445556666666666689999999987441 110 12489999999999887 32 23455655543
No 82
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.21 E-value=7.4e-11 Score=104.75 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=75.9
Q ss_pred eEeccC--CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeee
Q psy224 376 NIKLSQ--YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPIL 453 (547)
Q Consensus 376 ~~~l~~--~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l 453 (547)
...+++ .+||++||+|| ++||++|....|.+.+++++|.. .+.++.|..|...
T Consensus 10 ~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----------------------- 64 (142)
T cd02950 10 STPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----------------------- 64 (142)
T ss_pred cCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-----------------------
Confidence 444444 37899999999 99999999999999999999865 4788888776421
Q ss_pred cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 454 ~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
..++.+.|++. .+|+++++|++|+++..+.|..+ .+++.+.|+++.
T Consensus 65 ---~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~ 110 (142)
T cd02950 65 ---WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALV 110 (142)
T ss_pred ---cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHH
Confidence 12456789987 58999999999999999977653 345555555544
No 83
>KOG1651|consensus
Probab=99.21 E-value=5.9e-11 Score=103.43 Aligned_cols=124 Identities=15% Similarity=0.246 Sum_probs=94.7
Q ss_pred CCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hh
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HF 430 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~ 430 (547)
..+-+|+..| .+| +.++|+.|+||++|+.-. |+.|..-..++.+|..++++|+++|++|+++.+++ ..
T Consensus 12 ~siydf~~~d-~~G--~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSAKD-LDG--EYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEEec-CCC--CCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 3456899999 999 699999999999999999 99999999999999999999999999999999975 23
Q ss_pred hHHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCCC-------cceeEEEEEcCCCcEEEEEe
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEETG-------IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~g-------~~~p~~~lid~~G~v~~~~~ 492 (547)
++..+.. ..+ +..||++..-+ ...+..|+..+...+ ...-+.||||++|+++.++.
T Consensus 88 Ei~~f~~--~r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 88 EILNFVK--VRY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHHHH--hcc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 4445554 223 88888876432 233344443332211 12357999999999999993
No 84
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-10 Score=98.48 Aligned_cols=133 Identities=21% Similarity=0.402 Sum_probs=108.9
Q ss_pred ccCCCCCCeeeccccCCc-----eeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEEeCC
Q psy224 356 ALEKPAPEFEGQAVVNGQ-----FKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIACSTD 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~-----~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~is~d 427 (547)
.+|+++|+.++.. ..++ ...++.+++ +||.+||+-.|+.++|.|.. ++|.+.+++++|+++|+ +|+.||++
T Consensus 4 ~vg~klP~vtf~t-r~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 4 MVGKKLPAVTFKT-RVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred ccCCcCCceEeEE-eeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 4899999988876 3221 134556665 89999999999999999998 79999999999999998 69999999
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecCC
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.+...+|.+..-. .-+..++.|.+.++.+.+|+..+.. | ++.|...|+ +||.|.+.++.+.
T Consensus 83 D~FVm~AWak~~g~-----~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 83 DAFVMNAWAKSQGG-----EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred cHHHHHHHHHhcCC-----CccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence 99999999987511 2278899999999999999887664 2 345778888 5999999997653
No 85
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.09 E-value=8.6e-10 Score=92.39 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.+||++||+|| ++||++|+..+|.|.++++++ .++.++.|+.|.... ..+
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~~ 62 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TME 62 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HHH
Confidence 4457999999999 999999999999999999998 468888888765211 136
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++++|++. .+|+++++ ++|+++..+.|..
T Consensus 63 l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~ 91 (103)
T cd02985 63 LCRREKII------EVPHFLFY-KDGEKIHEEEGIG 91 (103)
T ss_pred HHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC
Confidence 77888988 58997666 8999999996644
No 86
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.07 E-value=4.3e-10 Score=110.54 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=81.6
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
+...+++++||++||+|| ++|||+|..++|.|++++++| |++|++|+.|.... -.||..
T Consensus 157 ~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~~- 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPNA- 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCcc-
Confidence 357889999999999999 999999999999999999987 69999999986321 125554
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+..+++.||+. .+|++||+|++ |++.....|..+ .+++.+.+..+
T Consensus 216 ~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~ 263 (271)
T TIGR02740 216 RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLA 263 (271)
T ss_pred cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 3456788999997 58999999994 666656656553 34555555443
No 87
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.00 E-value=2.6e-09 Score=92.84 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=75.3
Q ss_pred CC-CeEEEEEEeCCCCCCcHHHHHHHH---HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KG-QYVVLFFYPLDFTFVCPTEIIAFS---DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~g-k~~ll~f~~~~~cp~C~~~~~~l~---~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.| |+++|+|| ++||++|....+.+. ++.+.++ .++.++.|+.+.......| +.....+.
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEK 74 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHH
Confidence 57 89999999 999999999998875 5555555 3688888887754322221 11123568
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++++|++. .+|+++++|++ |+++....|..+ .+++.+.|+.+.
T Consensus 75 ~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~ 119 (125)
T cd02951 75 ELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence 899999987 58999999999 899999876653 355666666554
No 88
>KOG2501|consensus
Probab=98.98 E-value=2.5e-09 Score=93.58 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=87.0
Q ss_pred eeeccccCCceeeEecc-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCC-hhhHHHHhhcc
Q psy224 364 FEGQAVVNGQFKNIKLS-QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDS-HFSHLAWCNIP 439 (547)
Q Consensus 364 ~~l~~~~~G~~~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~-~~~~~~~~~~~ 439 (547)
..+.. .+| ..+..+ .++||++.++|- |.|||+|+.-.|.|.++|++.++. .+.||.||.|. .++..++.+++
T Consensus 15 ~~l~~-~~~--~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 15 NRLRK-QDG--TEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred Ceeec-cCC--ccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc
Confidence 34444 556 345554 569999999998 999999999999999999999864 49999999985 45666666654
Q ss_pred ccCCCCCCcceeee---cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 440 RNKGGLGDMAIPIL---SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 440 ~~~~~~~~~~fp~l---~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+.+|..+ .+..+++.+.|++. .+|+..+++++|+++...
T Consensus 91 -------~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 -------HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred -------CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 5555544 33448999999998 589999999999998766
No 89
>KOG0541|consensus
Probab=98.98 E-value=2.8e-09 Score=91.65 Aligned_cols=137 Identities=18% Similarity=0.314 Sum_probs=106.8
Q ss_pred hhccCCCCCCeeeccccCCc-----eeeEeccCC-CCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCc-EEEEEe
Q psy224 354 SYALEKPAPEFEGQAVVNGQ-----FKNIKLSQY-KGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINT-QVIACS 425 (547)
Q Consensus 354 ~~~~g~~~p~~~l~~~~~G~-----~~~~~l~~~-~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~-~vi~is 425 (547)
+..+|+..|+.++.. ...+ ..+++++++ +||.+||+=.|+.+.|.|. .++|.+....++|+++|+ +||.||
T Consensus 8 ~i~vGd~~p~~~is~-~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISL-FEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred cccccCccccccchh-hccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 445899999933221 1111 027888887 8999999999999999964 559999999999999998 589999
Q ss_pred CCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-----cceeEEEEEcCCCcEEEEEecCCCC
Q psy224 426 TDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-----IPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+|+++....|.+.+.. +-...++.|++.++.+.+|+..+... ++-|..++++ ||+|....+.+...
T Consensus 87 VnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~g~ 157 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEGGT 157 (171)
T ss_pred cCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccCCC
Confidence 9999999999988721 44678899999999999998876431 3346677775 99999999766544
No 90
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.96 E-value=6.9e-09 Score=88.14 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
..++++++|+|| ++||++|....|.+.++.++++..++.++.|.+|. +..+
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l 71 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRL 71 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHH
Confidence 346899999999 99999999999999999999986667777776552 3467
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++|++. .+|++++++ +|+++....|.. ..+++.+.|++
T Consensus 72 ~~~~~V~------~~Pt~~i~~-~g~~~~~~~G~~----~~~~l~~~i~~ 110 (111)
T cd02963 72 ARKLGAH------SVPAIVGII-NGQVTFYHDSSF----TKQHVVDFVRK 110 (111)
T ss_pred HHHcCCc------cCCEEEEEE-CCEEEEEecCCC----CHHHHHHHHhc
Confidence 7889987 589999995 999888775544 34566666654
No 91
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.96 E-value=3.9e-09 Score=87.82 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=65.1
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++++||+++|+|| ++||++|+..+|.+.+++++|+ ++.++.|..+. ....
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~ 63 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS 63 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence 4679999999999 9999999999999999999986 46677664331 1347
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++++|++. .+||+++++ +| .+..+.|.. +.+++.+
T Consensus 64 l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~~----~~~~l~~ 98 (100)
T cd02999 64 LLSRYGVV------GFPTILLFN-ST-PRVRYNGTR----TLDSLAA 98 (100)
T ss_pred HHHhcCCe------ecCEEEEEc-CC-ceeEecCCC----CHHHHHh
Confidence 78999998 589999997 45 556665543 4455443
No 92
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.91 E-value=1.2e-08 Score=85.33 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|+...|.+.++++++++..++++.+..| +.++++
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----------------------------~~~~~~ 65 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----------------------------TIDTLK 65 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----------------------------CHHHHH
Confidence 5789999999 9999999999999999999886545566666544 134568
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. ..|+.+++ ++|+++....|. +.+++++.|+++
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 66 RYRGK------CEPTFLFY-KNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred HcCCC------cCcEEEEE-ECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 99988 58977666 699999888663 346677766643
No 93
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.86 E-value=2.2e-08 Score=82.63 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++++.++. .+.++.|.++ ...++++
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~l~~ 60 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCD----------------------------AQPQIAQ 60 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEecc----------------------------CCHHHHH
Confidence 5789999999 99999999999999999998864 3566666543 2357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+|++. .+|++++++ +|+++..+.|.. +.+++.+.|
T Consensus 61 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l 95 (96)
T cd02956 61 QFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML 95 (96)
T ss_pred HcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence 89987 589999997 999988876544 344544443
No 94
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.82 E-value=4.8e-08 Score=82.21 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| |+||++|+...|.|.++.+++.+. +.++-|..| ..+++++
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD----------------------------~~~~la~ 62 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID----------------------------EVPDFNK 62 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC----------------------------CCHHHHH
Confidence 4679999999 999999999999999999988632 455555443 3568889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC------CCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG------RSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~------~~~~~il~~l~~l 511 (547)
.|+|. .+||++++ ++|+.+.+..|..+.. .+-++.++.+..+
T Consensus 63 ~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 63 MYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 99998 58999999 6999999997755432 2445555555433
No 95
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.80 E-value=2.4e-08 Score=83.74 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|++||+|| ++||++|....+.+ .++.+.+++ +++++.|..+.... ...+
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~ 63 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA 63 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence 5799999999 99999999998877 567777765 78888877653211 1246
Q ss_pred HHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
++++|++. .+|+++++++ +|+++.++.|.. +.+++.+.|
T Consensus 64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l 103 (104)
T cd02953 64 LLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL 103 (104)
T ss_pred HHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence 77889987 5899999999 899988886555 345555544
No 96
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.73 E-value=5.3e-08 Score=81.14 Aligned_cols=82 Identities=16% Similarity=0.352 Sum_probs=67.6
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------hhhHHH
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--------HFSHLA 434 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--------~~~~~~ 434 (547)
+|++.+ ++| +.++|++|+||++||+-. |+.|+.-. ++..|++++++|+++|++|+++.+++ .+++++
T Consensus 3 df~~~~-~~G--~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKD-IDG--KPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEB-TTS--SEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeC-CCC--CEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 678888 899 699999999999999999 99999888 99999999999999999999999875 234455
Q ss_pred HhhccccCCCCCCcceeeecC
Q psy224 435 WCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D 455 (547)
++... + +..||+...
T Consensus 78 ~~~~~--~----~~~F~vf~k 92 (108)
T PF00255_consen 78 FCKEK--F----GVTFPVFEK 92 (108)
T ss_dssp HHCHC--H----T-SSEEBS-
T ss_pred HHHhc--c----CCcccceEE
Confidence 55531 2 788888764
No 97
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.71 E-value=3.5e-08 Score=83.88 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh--hCCcEEEEEeCCChhh-HHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK--KINTQVIACSTDSHFS-HLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~--~~~~~vi~is~d~~~~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.||++|++|| ..|||+|....+.+.+..+--. +.++.++.+..+...+ ...+.+.. +.+++.. ...+
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------GQKNVRL--SNKE 73 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------CHSSCHH--HHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------cchhhhH--HHHH
Confidence 5799999999 9999999998888886554222 2358888888876543 23344422 2222222 3468
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+++.||+. .+|+.+++|++|+++....|..+ .+++++.|
T Consensus 74 l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~~----~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVN------GTPTIVFLDKDGKIVYRIPGYLS----PEELLKML 112 (112)
T ss_dssp HHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHcCCC------ccCEEEEEcCCCCEEEEecCCCC----HHHHHhhC
Confidence 99999998 58999999999999988877664 45555543
No 98
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.71 E-value=2.7e-07 Score=90.20 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=60.6
Q ss_pred ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhh
Q psy224 273 ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGIN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMR 351 (547)
Q Consensus 273 ~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~ 351 (547)
..+..+.... +++++++++++++++.++..+. ..+++ +|+++||+ ++|+.|++.+++.++.++.+++.++.+
T Consensus 168 ~vi~~l~~g~-~~~di~~~~~~~va~~i~~~~~-----~~~~~~~Vvl~GGv-a~n~~l~~~l~~~lg~~v~~~~~~~~~ 240 (248)
T TIGR00241 168 ELISLLAAGV-KKEDILAGVYESIAERVAEMLQ-----RLKIEAPIVFTGGV-SKNKGLVKALEKKLGMKVITPPEPQIV 240 (248)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHh-----hcCCCCCEEEECcc-ccCHHHHHHHHHHhCCcEEcCCCccHH
Confidence 3444556665 8999999999999999998665 22355 89999997 999999999999999999999888654
Q ss_pred hh
Q psy224 352 DA 353 (547)
Q Consensus 352 ~a 353 (547)
++
T Consensus 241 ~A 242 (248)
T TIGR00241 241 GA 242 (248)
T ss_pred HH
Confidence 43
No 99
>PRK09381 trxA thioredoxin; Provisional
Probab=98.70 E-value=1.5e-07 Score=79.64 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++|||+|....|.++++.++++. ++.++.+.++. ...+.+
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 69 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 69 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------ChhHHH
Confidence 3689999999 99999999999999999999975 47777776543 234567
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|++. ..|+++++ ++|+++....|..+ .+++.+.++
T Consensus 70 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~ 105 (109)
T PRK09381 70 KYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLD 105 (109)
T ss_pred hCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHH
Confidence 88887 58999999 69999998866543 345555444
No 100
>KOG0910|consensus
Probab=98.68 E-value=1.4e-07 Score=81.88 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++||||.|| |.||.+|....|.|+++.++|.. .++++-|.+ |+..+++.
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdt----------------------------D~~~ela~ 109 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDT----------------------------DEHPELAE 109 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcc----------------------------ccccchHh
Confidence 4689999999 99999999999999999999843 356655544 34578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|+|. +.|+++++ ++|..+.+++|..+
T Consensus 110 ~Y~I~------avPtvlvf-knGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 110 DYEIS------AVPTVLVF-KNGEKVDRFVGAVP 136 (150)
T ss_pred hccee------eeeEEEEE-ECCEEeeeecccCC
Confidence 99998 69999999 59999999977765
No 101
>PHA02278 thioredoxin-like protein
Probab=98.67 E-value=1.9e-07 Score=77.83 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| |+||++|+...|.+.++.+++.. .+.++-|..|.... | ..++++
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~-----------------------d-~~~l~~ 66 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV-----------------------D-REKAVK 66 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc-----------------------c-cHHHHH
Confidence 5789999999 99999999999999999877532 35666666654210 1 246889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|+|. .+||.+++ ++|+.+.+..|..
T Consensus 67 ~~~I~------~iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 67 LFDIM------STPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred HCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence 99998 58999999 5899999997754
No 102
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.63 E-value=3.1e-07 Score=76.44 Aligned_cols=85 Identities=8% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+ .+|+|| ++||++|....|.+.+++++++..++.+..|.++ .+..+++
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~~~~ 65 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----------------------------QEPGLSG 65 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----------------------------CCHhHHH
Confidence 566 579999 9999999999999999998876555666655432 2345778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|++. .+|+++++ ++|++ ..+.|.. ..+++.+.++
T Consensus 66 ~~~i~------~~Pt~~~~-~~g~~-~~~~G~~----~~~~l~~~i~ 100 (101)
T cd02994 66 RFFVT------ALPTIYHA-KDGVF-RRYQGPR----DKEDLISFIE 100 (101)
T ss_pred HcCCc------ccCEEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence 89987 58999887 78986 5554533 4556666554
No 103
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.58 E-value=3.4e-07 Score=76.73 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++++++|+|| ++|||+|+...|.+.+++++++..+ +.+..+.++ ....+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~----------------------------~~~~~ 64 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT----------------------------AYSSI 64 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc----------------------------cCHhH
Confidence 4578999999 9999999999999999999997544 334333332 23467
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++.|++. .+|+.++++ +|. ...+.|.. ..+++.+.++++
T Consensus 65 ~~~~~I~------~~Pt~~l~~-~~~-~~~~~G~~----~~~~l~~~~~~~ 103 (104)
T cd03000 65 ASEFGVR------GYPTIKLLK-GDL-AYNYRGPR----TKDDIVEFANRV 103 (104)
T ss_pred HhhcCCc------cccEEEEEc-CCC-ceeecCCC----CHHHHHHHHHhh
Confidence 7889987 589999994 454 34454433 456666666543
No 104
>PRK10996 thioredoxin 2; Provisional
Probab=98.57 E-value=6.2e-07 Score=79.37 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++||++|....+.|.++++++.. ++.++.|..+ .+.++++
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~----------------------------~~~~l~~ 100 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE----------------------------AERELSA 100 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC----------------------------CCHHHHH
Confidence 4789999999 99999999999999999988764 4666665432 2457888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.++++ +|+++..+.|.. ..+++.+.|++
T Consensus 101 ~~~V~------~~Ptlii~~-~G~~v~~~~G~~----~~e~l~~~l~~ 137 (139)
T PRK10996 101 RFRIR------SIPTIMIFK-NGQVVDMLNGAV----PKAPFDSWLNE 137 (139)
T ss_pred hcCCC------ccCEEEEEE-CCEEEEEEcCCC----CHHHHHHHHHH
Confidence 99988 589988884 999999886654 34556666654
No 105
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.56 E-value=4.4e-07 Score=81.07 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++.+++...+++++.|.+|.. .++++
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----------------------------~~la~ 96 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----------------------------PNVAE 96 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----------------------------HHHHH
Confidence 4679999999 999999999999999999999766788888877552 34455
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+|++.....-..+||.+++ ++|+.+.+..|
T Consensus 97 ~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 97 KFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred HcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 5665410000137999999 49999999976
No 106
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.56 E-value=3.5e-07 Score=77.35 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|.|| ++|||+|....|.+.+++++++..++.++.|.+|.. +..+++
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~~ 71 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFAK 71 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhHH
Confidence 5789999999 999999999999999999999876788888877651 112333
Q ss_pred -HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 463 -SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 463 -~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
.|++. .+|+.++++++++....+.++ .++.+.++.
T Consensus 72 ~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~ 107 (109)
T cd02993 72 EELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLM 107 (109)
T ss_pred hhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHh
Confidence 47876 489999998887766666432 135555543
No 107
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.55 E-value=4.9e-07 Score=75.68 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=61.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|.|| ++||++|....|.+.++.++++. .+.++.|.++ .+.++++
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~~ 67 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQ----------------------------KYESLCQ 67 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC----------------------------chHHHHH
Confidence 4679999999 99999999999999999999853 4666666544 2356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.|++. .+|+.++++++|+....+.|..
T Consensus 68 ~~~i~------~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 68 QANIR------AYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred HcCCC------cccEEEEEcCCCCCceEccCCC
Confidence 89987 5899999976668888886544
No 108
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.54 E-value=1e-06 Score=77.15 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=72.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|| ++||++|....|.|.++.+++++. +.|+-|.+| ..+++++
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD----------------------------e~~dla~ 71 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT----------------------------EVPDFNT 71 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC----------------------------CCHHHHH
Confidence 4689999999 999999999999999999988532 455555554 3467888
Q ss_pred HhCCcccCCCcceeEEE-EEcCCCc-EEEEEecCCC----CCCCHHHHHHHHHhhHhhhhcCcc
Q psy224 463 SYGVLNEETGIPYRGLF-IIDDKQN-LRQITINDLP----VGRSVDETLRLVQAFQFVAEHGEV 520 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~-lid~~G~-v~~~~~~~~~----~~~~~~~il~~l~~l~~~~~~~~~ 520 (547)
.|++. ..|+++ ++ ++|+ .+....|..+ ...+.+++++.++.+.-.+..|..
T Consensus 72 ~y~I~------~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~ 128 (142)
T PLN00410 72 MYELY------DPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRG 128 (142)
T ss_pred HcCcc------CCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCe
Confidence 89987 245555 66 6888 5666655321 123678888888887766666543
No 109
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.54 E-value=8.3e-07 Score=73.33 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++++|| ++||+.|....+.+.++.+++.. ++.++.|..| .+.++++
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d----------------------------~~~~l~~ 61 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID----------------------------EDQEIAE 61 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC----------------------------CCHHHHH
Confidence 4689999999 99999999999999999988864 4566555543 2356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.|++. ..|+.++++ +|+++....+..
T Consensus 62 ~~~v~------~vPt~~i~~-~g~~v~~~~g~~ 87 (97)
T cd02949 62 AAGIM------GTPTVQFFK-DKELVKEISGVK 87 (97)
T ss_pred HCCCe------eccEEEEEE-CCeEEEEEeCCc
Confidence 88887 589999995 899998886544
No 110
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.53 E-value=3.5e-07 Score=76.15 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....|.+.++.++++. .+.+..|.+|. +..+++
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 66 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLCR 66 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHHH
Confidence 5689999999 99999999999999999999874 36777776643 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. .+|+.+++ ++|+....+.|.
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 91 (101)
T cd03003 67 SQGVN------SYPSLYVF-PSGMNPEKYYGD 91 (101)
T ss_pred HcCCC------ccCEEEEE-cCCCCcccCCCC
Confidence 88987 58999999 688877666443
No 111
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.51 E-value=4.6e-07 Score=76.48 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=65.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....|.+.+++++++. .+.++.|+++.. .+.++.+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 4788999999 99999999999999999998864 477888877641 1357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCc----EEEEEecCCCCCCCHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQN----LRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~----v~~~~~~~~~~~~~~~~il~~ 507 (547)
.|++. .+|+.+++++++. +...+.|+ +..+++.+.
T Consensus 69 ~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G~----~~~~~l~~f 107 (109)
T cd03002 69 KYGVQ------GFPTLKVFRPPKKASKHAVEDYNGE----RSAKAIVDF 107 (109)
T ss_pred HcCCC------cCCEEEEEeCCCcccccccccccCc----cCHHHHHHH
Confidence 99988 5899999987763 34444333 245555544
No 112
>KOG0907|consensus
Probab=98.51 E-value=9.6e-07 Score=73.72 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|.+|++|+ ++||++|+.-.|.+.++..+|.+ +.++-|.+|. ..++++
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~ 68 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAK 68 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHH
Confidence 3689999999 99999999999999999999985 7888887765 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++. ..||+.++ ++|+.+...+|...
T Consensus 69 ~~~V~------~~PTf~f~-k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 69 EFNVK------AMPTFVFY-KGGEEVDEVVGANK 95 (106)
T ss_pred hcCce------EeeEEEEE-ECCEEEEEEecCCH
Confidence 99998 58999999 79999999976553
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.49 E-value=1.6e-06 Score=72.46 Aligned_cols=92 Identities=11% Similarity=0.132 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|+ ++||++|...-|.|.++.++|++. +.++-|.+|. .+++++
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~ 62 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQ 62 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHH
Confidence 5899999999 999999999999999999999632 6677766653 356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC------CCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG------RSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~------~~~~~il~~l~~l 511 (547)
.|++. +.|+++++ ++|+-+....|..+.. .+-++.++.++.+
T Consensus 63 ~y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 63 YFDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred hcCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 88987 57999988 6888888886654321 1345666665544
No 114
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.49 E-value=8.1e-07 Score=73.90 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++|+|| ++||++|....|.+.+++++++. .++.++.|.++ .+..+++.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT----------------------------QHRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC----------------------------CChhhHhh
Confidence 5899999 99999999999999999999975 34666655433 23467788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
|++. ..|+.+++ ++|+.+..+.|..+
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~G~~~ 94 (102)
T cd03005 69 FQVR------GYPTLLLF-KDGEKVDKYKGTRD 94 (102)
T ss_pred cCCC------cCCEEEEE-eCCCeeeEeeCCCC
Confidence 9987 58999999 68888888866653
No 115
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.46 E-value=1.3e-06 Score=72.95 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||++|+...|.+.++.+++++. .+.++.+.++. +.+..+.
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~ 68 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK 68 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence 4678999999 999999999999999999998752 34555554432 1245778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.|++. .+|+.+++ ++|+++..+.|..
T Consensus 69 ~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~ 95 (104)
T cd02997 69 EEYNVK------GFPTFKYF-ENGKFVEKYEGER 95 (104)
T ss_pred HhCCCc------cccEEEEE-eCCCeeEEeCCCC
Confidence 899987 48987666 6899888775544
No 116
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.45 E-value=5.6e-07 Score=77.04 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=57.2
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+.+..++|+++|+|| ++||++|+...|.+.+..+... .+..++.|..|....
T Consensus 13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~-------------------------- 64 (117)
T cd02959 13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE-------------------------- 64 (117)
T ss_pred HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC--------------------------
Confidence 344457899999999 9999999999999988766543 344566665553210
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
.....|++. +..+|+++++|++|+++..+++
T Consensus 65 -~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 -PKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred -chhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 111244443 1137999999999999886543
No 117
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.44 E-value=1.4e-06 Score=72.25 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||+.|+...+.+.++.+.++..+ +.++.+.. |.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~----------------------------~~~~~~~ 62 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA----------------------------TAEKDLA 62 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc----------------------------cchHHHH
Confidence 6899999999 9999999999999999998886543 44444433 2346778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.|++. .+|+.+++++++. ...+.|.. ..+++.+.+++
T Consensus 63 ~~~~i~------~~P~~~~~~~~~~-~~~~~g~~----~~~~l~~~i~~ 100 (102)
T TIGR01126 63 SRFGVS------GFPTIKFFPKGKK-PVDYEGGR----DLEAIVEFVNE 100 (102)
T ss_pred HhCCCC------cCCEEEEecCCCc-ceeecCCC----CHHHHHHHHHh
Confidence 889987 5899999998877 55564543 34555555543
No 118
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.42 E-value=2.7e-06 Score=78.34 Aligned_cols=184 Identities=11% Similarity=0.137 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHhCCceEEecchhhhhhh--hc-cCCCCCCeeeccccCCceeeEeccCC-CCCe-EEEEEEe-----CCC
Q psy224 327 NHILQHYIERIYGLQLIVEQDQAMRDAS--YA-LEKPAPEFEGQAVVNGQFKNIKLSQY-KGQY-VVLFFYP-----LDF 396 (547)
Q Consensus 327 ~~~~~q~~Ad~l~~~v~~~~~~~~~~a~--~~-~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~-~ll~f~~-----~~~ 396 (547)
...|.......+.+........+..++. .+ .+..-.++.+.. .+| +++|+|+ .||- +||+.|. ..-
T Consensus 9 ~eew~~Ar~~LL~~EKeltR~~dalaa~RR~LP~v~v~~~Y~F~g-~~G---~v~L~dLF~Gr~qLivyhfM~~p~~~~~ 84 (211)
T PF05988_consen 9 REEWLAARDALLAREKELTRARDALAAERRRLPMVEVDKDYVFDG-PDG---PVSLADLFEGRRQLIVYHFMFGPDWDEG 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeEEeC-CCC---cccHHHHcCCCceEEEEeeccCCCCCCC
Confidence 4456666655555444443333222221 11 334444576765 667 7999997 7763 4444443 468
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-cce
Q psy224 397 TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-IPY 475 (547)
Q Consensus 397 cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-~~~ 475 (547)
||.|...+..++.....+.++++.+++||-.+.+++..|.+.. ++.||.++..+..+...|++..+..+ ...
T Consensus 85 C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g 157 (211)
T PF05988_consen 85 CPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPG 157 (211)
T ss_pred CCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCcee
Confidence 9999999999988888899999999999999999999999987 99999999888888889998664322 212
Q ss_pred eEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhhcCcc-ccCCc
Q psy224 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEV-CPAGW 525 (547)
Q Consensus 476 p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~~~~-~~~~w 525 (547)
=+.|+-| +|+|.+.+.. ..+-.+.+.-...-|-.++...+. -|.+|
T Consensus 158 ~svF~Rd-g~~VfhTyst---~~RG~e~l~~~~~lLDlTP~GR~E~~~~~W 204 (211)
T PF05988_consen 158 LSVFLRD-GGRVFHTYST---YGRGGERLMPTWNLLDLTPLGRQEDPPMDW 204 (211)
T ss_pred EEEEEEc-CCEEEEEeec---CCCCchhhhhHHHHHhcCCCCCCCCCCCCc
Confidence 2456555 4888888842 333344444444444444444333 46677
No 119
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.42 E-value=1.3e-06 Score=73.98 Aligned_cols=76 Identities=5% Similarity=0.062 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH-
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA- 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~- 461 (547)
.++++||.|| ++||++|+...|.+.++.+++++ .+.++.|.+|. +..++
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~----------------------------~~~l~~ 77 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW----------------------------PQGKCR 77 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------ChHHHH
Confidence 4689999999 99999999999999999999864 26666665543 23455
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++|++. .+|+..++ ++|+....+.|..
T Consensus 78 ~~~~I~------~~PTl~lf-~~g~~~~~y~G~~ 104 (113)
T cd03006 78 KQKHFF------YFPVIHLY-YRSRGPIEYKGPM 104 (113)
T ss_pred HhcCCc------ccCEEEEE-ECCccceEEeCCC
Confidence 578887 58999988 6888776665544
No 120
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.42 E-value=2.1e-06 Score=70.73 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=58.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|+++|+|| ++||++|....+.|.++.+++ ..++.++.+..+ ...++.++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~----------------------------~~~~~~~~ 63 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE----------------------------ELPEISEK 63 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc----------------------------cCHHHHHh
Confidence 689999999 999999999999999999887 335666655321 13577889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
|++. ..|+.++++ +|+++....|.
T Consensus 64 ~~i~------~~Pt~~~~~-~g~~~~~~~g~ 87 (97)
T cd02984 64 FEIT------AVPTFVFFR-NGTIVDRVSGA 87 (97)
T ss_pred cCCc------cccEEEEEE-CCEEEEEEeCC
Confidence 9987 589999885 89999888553
No 121
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.42 E-value=2.7e-06 Score=70.67 Aligned_cols=87 Identities=15% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| +.||+.|....|.+.++.+++++ ++.++-|..+. +..+++
T Consensus 16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 65 (103)
T PF00085_consen 16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCK 65 (103)
T ss_dssp TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHH
T ss_pred cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhh
Confidence 3689999999 99999999999999999999887 77777776542 357889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.+++ ++|+....+.+.. +.+++.+.|++
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~i~~ 102 (103)
T PF00085_consen 66 KYGVK------SVPTIIFF-KNGKEVKRYNGPR----NAESLIEFIEK 102 (103)
T ss_dssp HTTCS------SSSEEEEE-ETTEEEEEEESSS----SHHHHHHHHHH
T ss_pred ccCCC------CCCEEEEE-ECCcEEEEEECCC----CHHHHHHHHHc
Confidence 99998 58999999 4888888776553 46677776653
No 122
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.41 E-value=1.7e-06 Score=72.99 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee-eecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~ 461 (547)
.+++++|+|| ++||++|+...|.+.++++++++.. .+. ..+.|. +-.|.+.+++
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~-----------------~~~-------~~~~~~~vd~d~~~~l~ 71 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEF-----------------PDA-------GKVVWGKVDCDKESDIA 71 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhcc-----------------CCC-------CcEEEEEEECCCCHHHH
Confidence 3678999999 9999999999999999998886421 000 022332 2245567889
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLR 506 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~ 506 (547)
++|++. .+|+.+++ ++|++. ..+.| .++.+++.+
T Consensus 72 ~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~ 106 (108)
T cd02996 72 DRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAE 106 (108)
T ss_pred HhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHh
Confidence 999998 58999999 688854 44433 234555544
No 123
>PTZ00051 thioredoxin; Provisional
Probab=98.37 E-value=2e-06 Score=71.07 Aligned_cols=74 Identities=9% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++||++|....+.+.++.+++. ++.++.|..+ ....+.+
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~----------------------------~~~~~~~ 65 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD----------------------------ELSEVAE 65 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc----------------------------chHHHHH
Confidence 4689999999 9999999999999999998764 4666665432 2357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. ..|+.+++ ++|+++..+.|.
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 66 KENIT------SMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred HCCCc------eeeEEEEE-eCCeEEEEEeCC
Confidence 99987 58987766 799999999764
No 124
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.36 E-value=2.6e-06 Score=72.64 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=52.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
+|+++|+|| ++||++|....|.+.++.++|++. + +.+..|.++. +.+.++.
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~ 71 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALC 71 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHH
Confidence 479999999 999999999999999999988642 2 4444443322 1235778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCC
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQ 485 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G 485 (547)
+.|++. .+|+.+++.+..
T Consensus 72 ~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 72 RDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred HhCCCC------CCCEEEEECCCC
Confidence 889987 589999996544
No 125
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.35 E-value=2.5e-06 Score=80.22 Aligned_cols=143 Identities=21% Similarity=0.263 Sum_probs=100.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-C-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEe----CC-
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-K-GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACS----TD- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~-gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is----~d- 427 (547)
.+|..+||..+.+ .+|+ +..++-|| + ++|+||+|. +-.||+-...+..++++.++|.+. ++-+|-|- .|
T Consensus 74 ~~G~~APns~vv~-l~g~-~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 74 KLGGPAPNSPVVT-LDGQ-RSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDG 150 (237)
T ss_pred eCCCCCCCCceEe-eCCC-cceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCC
Confidence 3899999999999 8884 33899999 4 489999999 666999999999999999999862 33333331 11
Q ss_pred -----------ChhhHHHHhhccccCCCCCCcceeeecCC-ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 428 -----------SHFSHLAWCNIPRNKGGLGDMAIPILSDK-SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 -----------~~~~~~~~~~~~~~~~~~~~~~fp~l~D~-~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+...+++-++. ++.+..+...+|++.|. +....+.||... -..||| ++|+|.+.- ++-
T Consensus 151 W~~~~~~~~i~qh~sledR~~a-A~~l~~~~~~~pi~vD~mdN~~~~~YgA~P-------eRlyIi-~~gkv~Y~G-g~G 220 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRA-AKLLKEEFPQCPIVVDTMDNNFNKAYGALP-------ERLYII-QDGKVVYKG-GPG 220 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHH-HHHHHhhCCCCCEEEEccCCHHHHHhCCCc-------ceEEEE-ECCEEEEeC-CCC
Confidence 11111111111 11112225788988875 588889999873 126777 499999988 566
Q ss_pred CCCCCHHHHHHHHHhh
Q psy224 496 PVGRSVDETLRLVQAF 511 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l 511 (547)
+..-+++|+.+.|++.
T Consensus 221 P~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 221 PFGYSPEELREWLEKY 236 (237)
T ss_pred CCcCCHHHHHHHHHhc
Confidence 6666789998888764
No 126
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.32 E-value=5.6e-06 Score=68.40 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=64.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|....+.+.++.+++.. ++.++.|..+. +.++.++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 63 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAK 63 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHH
Confidence 568999999 99999999999999999988853 47777765432 3466788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
|++. ..|+.+++ ++|++.....|.. +.+++.+.|+
T Consensus 64 ~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~ 98 (101)
T TIGR01068 64 YGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLIN 98 (101)
T ss_pred cCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHH
Confidence 8987 58999999 6888887775544 3455555554
No 127
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.32 E-value=5.7e-06 Score=70.72 Aligned_cols=87 Identities=7% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCeEEEEEEeCCCCCC--cH--HHHHHHHHHHHHH-hhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 384 GQYVVLFFYPLDFTFV--CP--TEIIAFSDRAEEF-KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~--C~--~~~~~l~~~~~~~-~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.+++|++|| +.||++ |+ ...|.+.++..++ ++.++.++-|.+| .+.
T Consensus 27 ~~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d----------------------------~~~ 77 (120)
T cd03065 27 DVLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK----------------------------KDA 77 (120)
T ss_pred CceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC----------------------------CCH
Confidence 358888888 999987 99 5677777777776 2345666666554 357
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++++|+|. .+||.+++ ++|+++. +.|.. ..+.+.+.|+++
T Consensus 78 ~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~~----~~~~l~~~l~~~ 118 (120)
T cd03065 78 KVAKKLGLD------EEDSIYVF-KDDEVIE-YDGEF----AADTLVEFLLDL 118 (120)
T ss_pred HHHHHcCCc------cccEEEEE-ECCEEEE-eeCCC----CHHHHHHHHHHH
Confidence 889999998 58999999 5999886 65554 345666666654
No 128
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.32 E-value=3.4e-06 Score=72.72 Aligned_cols=90 Identities=8% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.|+..+|+|+ ++|||+|+...|.|.++.++ .++.++-|..|...... ..+. +.-.++.+
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~-~~~~----------------~~~~~~~~ 80 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFE-MSSL----------------NDLTAFRS 80 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcC-cccH----------------HHHHHHHH
Confidence 3677899999 99999999999999999887 35778898887421100 0000 00034445
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++... ...+|+.+++ ++|+.+....|...
T Consensus 81 ~~~i~~~--i~~~PT~v~~-k~Gk~v~~~~G~~~ 111 (122)
T TIGR01295 81 RFGIPTS--FMGTPTFVHI-TDGKQVSVRCGSST 111 (122)
T ss_pred HcCCccc--CCCCCEEEEE-eCCeEEEEEeCCCC
Confidence 5554310 1247999999 69999999877643
No 129
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.30 E-value=4.2e-06 Score=70.02 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=61.7
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.|.++||.|| +.| ||.|....|.|.++.++|.++ +.++-|..| .++++
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid----------------------------~~~~l 75 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA----------------------------DEQAL 75 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC----------------------------CCHHH
Confidence 5678899999 997 999999999999999998642 444444433 34688
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+.+|+|. .+||.+++ ++|+++....|..+
T Consensus 76 a~~f~V~------sIPTli~f-kdGk~v~~~~G~~~ 104 (111)
T cd02965 76 AARFGVL------RTPALLFF-RDGRYVGVLAGIRD 104 (111)
T ss_pred HHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence 8999998 58999999 59999999977553
No 130
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.2e-06 Score=81.53 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+-+||||+|| ++||++|..-+|.|.++..+|+. .+.+.-|++ |..+.++.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~----------------------------D~~p~vAa 91 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNC----------------------------DAEPMVAA 91 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecC----------------------------CcchhHHH
Confidence 5579999999 99999999999999999999863 244444444 34578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+|||. ++|++|++ ++|+-+.-+.|..+
T Consensus 92 qfgiq------sIPtV~af-~dGqpVdgF~G~qP 118 (304)
T COG3118 92 QFGVQ------SIPTVYAF-KDGQPVDGFQGAQP 118 (304)
T ss_pred HhCcC------cCCeEEEe-eCCcCccccCCCCc
Confidence 99998 69999999 79999999976664
No 131
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.28 E-value=1.5e-05 Score=68.72 Aligned_cols=101 Identities=9% Similarity=-0.068 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHH-H--HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIA-F--SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~-l--~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++|+++|+|+ ++||+.|+..-+. + .++.+.+. +++.++-|..+...+..+. + ...
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~---~-----------------~~~ 71 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKI---Y-----------------MNA 71 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHH---H-----------------HHH
Confidence 6899999999 9999999977553 2 23333332 2455555544332221110 0 012
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC----CCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP----VGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~----~~~~~~~il~~l~~l 511 (547)
....|++. ..|+++++|++|++++...+-.. ....+.++++.++++
T Consensus 72 ~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 72 AQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred HHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 22245665 58999999999999988833221 223577777777653
No 132
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.28 E-value=2.1e-06 Score=73.19 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 382 YKGQYVVLFFYPL-------DFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 382 ~~gk~~ll~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
.+|++++|+|| | +|||+|+...|.+.++.++++. ++.++-|..|... .| .
T Consensus 19 ~~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---~w------------------~ 75 (119)
T cd02952 19 HEGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---YW------------------R 75 (119)
T ss_pred cCCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---cc------------------c
Confidence 35899999999 9 9999999999999999998863 5788888776522 11 2
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
|.+..+...|++.. .+||.++++..++++
T Consensus 76 d~~~~~~~~~~I~~-----~iPT~~~~~~~~~l~ 104 (119)
T cd02952 76 DPNNPFRTDPKLTT-----GVPTLLRWKTPQRLV 104 (119)
T ss_pred CcchhhHhccCccc-----CCCEEEEEcCCceec
Confidence 34567888888861 389999996555544
No 133
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.25 E-value=4e-06 Score=68.96 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++++++|+|| ++||++|....+.+.++.+.++ ..++.++.|..+ .+.++.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------------~~~~~~ 64 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT----------------------------ANNDLC 64 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc----------------------------chHHHH
Confidence 4568999999 9999999999999999998885 335666555432 246778
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|++. ..|+.++++++|+....+.+.. +.+++.+
T Consensus 65 ~~~~i~------~~Pt~~~~~~~~~~~~~~~g~~----~~~~i~~ 99 (101)
T cd02961 65 SEYGVR------GYPTIKLFPNGSKEPVKYEGPR----TLESLVE 99 (101)
T ss_pred HhCCCC------CCCEEEEEcCCCcccccCCCCc----CHHHHHh
Confidence 889987 5899999998876666654333 4555544
No 134
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.25 E-value=7.4e-06 Score=69.72 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|....|.+.++.++|. ++.++-|..+ .. .+++.
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~----------------------------~~-~l~~~ 71 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAE----------------------------KA-FLVNY 71 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch----------------------------hh-HHHHh
Confidence 589999999 9999999999999999998874 3444433322 12 66788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. .+|+.+++ ++|+++.+..|..
T Consensus 72 ~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 72 LDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred cCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 8987 58998888 6899999997643
No 135
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.25 E-value=3.5e-06 Score=80.16 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=62.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|+...|.+.+++++++. .+.+..|.+ |.+.++.++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~----------------------------~~~~~l~~~ 101 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDA----------------------------TRALNLAKR 101 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecC----------------------------cccHHHHHH
Confidence 578999999 99999999999999999998864 244433322 223578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|++. .+|+.++++ +|+++....|.. +.+++.+.+.+
T Consensus 102 ~~I~------~~PTl~~f~-~G~~v~~~~G~~----s~e~L~~fi~~ 137 (224)
T PTZ00443 102 FAIK------GYPTLLLFD-KGKMYQYEGGDR----STEKLAAFALG 137 (224)
T ss_pred cCCC------cCCEEEEEE-CCEEEEeeCCCC----CHHHHHHHHHH
Confidence 9998 589999997 788876553332 45565555444
No 136
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.22 E-value=4.9e-06 Score=69.41 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+++|+|| ++||++|+...+.+.++.++++. .++.++.+.++.+ ...+.+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~ 69 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAK 69 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHH
Confidence 578999999 99999999999999999999873 3466666655431 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+|++. .+|+.++++++|+....+.+.
T Consensus 70 ~~~i~------~~P~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 70 KYGVS------GFPTLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred hCCCC------CcCEEEEEeCCCCCccccCCc
Confidence 89887 589999998877666666443
No 137
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.21 E-value=9.6e-06 Score=68.98 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=57.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++.++|+|| ++|||+|....|.+.++.+++. .+++.-|..|. +.+++++
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~----------------------------~~~l~~~ 70 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE----------------------------DKEKAEK 70 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc----------------------------CHHHHHH
Confidence 456777788 9999999999999999987752 45665554432 3578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEE-EEecCCCCCCCHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQ-ITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~-~~~~~~~~~~~~~~il~~l 508 (547)
|++. ..|+.++++.+|.... .+.| .+.+..+.+.++.|
T Consensus 71 ~~v~------~vPt~~i~~~g~~~~~~~~~G-~~~~~el~~~i~~i 109 (113)
T cd02975 71 YGVE------RVPTTIFLQDGGKDGGIRYYG-LPAGYEFASLIEDI 109 (113)
T ss_pred cCCC------cCCEEEEEeCCeecceEEEEe-cCchHHHHHHHHHH
Confidence 9998 5899999975332211 3434 33333444444443
No 138
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.21 E-value=1.8e-05 Score=67.29 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|+|| ++||++|....|.|.++.+++. ++.++-|..+ ....+++
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~----------------------------~~~~l~~ 69 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAE----------------------------KAPFLVE 69 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcc----------------------------cCHHHHH
Confidence 3578999999 9999999999999999998874 3555554433 2456889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+|++. ..|+.+++ ++|+++.+..+....
T Consensus 70 ~~~v~------~vPt~l~f-k~G~~v~~~~g~~~~ 97 (113)
T cd02989 70 KLNIK------VLPTVILF-KNGKTVDRIVGFEEL 97 (113)
T ss_pred HCCCc------cCCEEEEE-ECCEEEEEEECcccc
Confidence 99998 58999999 599999988665443
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.18 E-value=6e-06 Score=90.07 Aligned_cols=95 Identities=14% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
..+||+++|+|| ++||++|+...+.. .++.++++ ++.++-+..+... +.+
T Consensus 471 ~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~~ 523 (571)
T PRK00293 471 KGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AED 523 (571)
T ss_pred HhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hhh
Confidence 346899999999 99999999876653 45555554 5666666654311 124
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.++|++. ..|+++++|++|+++ .++.|.. +.+++++.|++++
T Consensus 524 ~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence 6788899988 589999999999995 4454444 4567777777654
No 140
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.12 E-value=2.1e-05 Score=65.40 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||++|....|.+.++.++++. .+.++.+..+ .+.++.++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~----------------------------~~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDAD----------------------------VHQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECc----------------------------chHHHHHH
Confidence 567999999 99999999999999999988863 3566655442 24577889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|++. ..|+.++++++.+....+.++ ++.+++.+
T Consensus 68 ~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~ 100 (103)
T cd03001 68 YGVR------GFPTIKVFGAGKNSPQDYQGG----RTAKAIVS 100 (103)
T ss_pred CCCC------ccCEEEEECCCCcceeecCCC----CCHHHHHH
Confidence 9987 589999997553444444333 34455543
No 141
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.11 E-value=1.7e-05 Score=83.22 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.+.++.++|+..++.++.|.+|.. ......+
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------~~~~~~~ 422 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------QKEFAKQ 422 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------ccHHHHH
Confidence 6789999999 999999999999999999999877788888877641 0122346
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|+|. .+|+.+++.++..-...| . ...++++.++..++.+
T Consensus 423 ~~~I~------~~PTii~Fk~g~~~~~~Y--~-~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 423 ELQLG------SFPTILFFPKHSSRPIKY--P-SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HcCCC------ccceEEEEECCCCCceeC--C-CCCCCHHHHHHHHHhh
Confidence 78887 589999996443222222 1 1346888988888765
No 142
>PRK13317 pantothenate kinase; Provisional
Probab=98.10 E-value=0.00018 Score=70.98 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~~~~~~a 353 (547)
.+++++++++..++..+-...-. ..+..++++|+.+||++++|+.+++.+++.+ +..+.+++.+....|
T Consensus 194 ~~eDIaasl~~~v~~~I~~lA~~-~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gA 265 (277)
T PRK13317 194 TSSDILAGVIGLVGEVITTLSIQ-AAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGA 265 (277)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHH
Confidence 79999999999998888776431 1122457899999965799999999999999 688888888776554
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.09 E-value=8.5e-06 Score=77.38 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=74.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.-.+.++.+++.|++|| .+.||+|..+.|.|+.+.++| |+.|+.||.|..... .||-..
T Consensus 112 ~~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~----------------~fp~~~- 170 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP----------------SFPNPR- 170 (215)
T ss_pred HHHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc----------------CCCCCC-
Confidence 34566777889999999 889999999999999999998 899999999863211 222211
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCC-cEEEEEecCCCCCCCHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQ-NLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G-~v~~~~~~~~~~~~~~~~il~ 506 (547)
.+..+++.||+. ..|++||+++++ ++.-...|..+ .+++++
T Consensus 171 ~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~s----~~~L~~ 212 (215)
T PF13728_consen 171 PDPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFMS----LDELED 212 (215)
T ss_pred CCHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecCC----HHHHHH
Confidence 267788899997 589999999988 44444445553 455543
No 144
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.03 E-value=5.8e-05 Score=60.69 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|| ++||+.|....+.+.++.++ ..++.++.+..+. +.++.+.
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~ 58 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEE 58 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHh
Confidence 388999999 99999999999999998877 4467777776543 3456677
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. ..|+.++++ +|+++..+.+..
T Consensus 59 ~~v~------~~P~~~~~~-~g~~~~~~~g~~ 83 (93)
T cd02947 59 YGVR------SIPTFLFFK-NGKEVDRVVGAD 83 (93)
T ss_pred cCcc------cccEEEEEE-CCEEEEEEecCC
Confidence 8887 489999885 778888886544
No 145
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.00 E-value=1.9e-05 Score=76.33 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=76.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.-.++++..++.|++|| .+.||+|....|.|+.+.++| |+.|+.||.|.... -.||-..
T Consensus 142 ~~~i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~----------------p~fp~~~- 200 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLI----------------PGLPNSR- 200 (256)
T ss_pred HHHHHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCcc-
Confidence 34567777889999999 899999999999999999998 89999999986311 1133221
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.+...++.+|+. ..|++||++++ ++..-.-+|..+.....+.++..
T Consensus 201 ~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 201 SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFISQDELKERILNV 247 (256)
T ss_pred CChHHHHhcCCc------cCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHH
Confidence 256778899997 48999999999 55555555666543333344433
No 146
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.99 E-value=4.4e-05 Score=77.02 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=54.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-----CCceEEecchhhhh
Q psy224 278 ITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-----GLQLIVEQDQAMRD 352 (547)
Q Consensus 278 l~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-----~~~v~~~~~~~~~~ 352 (547)
+.... ++++++.++..+++-.+...+.. +... -++|+++||. ++|+.+.+.+.+.+ +.+|.+++.+..+.
T Consensus 350 la~G~-~reDIaAGL~~SIA~Rv~s~l~r--~~~i-~~~VvftGGv-A~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~G 424 (432)
T TIGR02259 350 LALGD-KREDILAGLHRAIILRAISIISR--SGGI-TDQFTFTGGV-AKNEAAVKELRKLIKENYGEVQINIDPDSIYTG 424 (432)
T ss_pred HHCCC-CHHHHHHHHHHHHHHHHHHHHhc--ccCC-CCCEEEECCc-cccHHHHHHHHHHHccccCCCeEecCCCccHHH
Confidence 34444 89999999999999887766542 2111 3589999996 99999999999999 46788887777665
Q ss_pred h
Q psy224 353 A 353 (547)
Q Consensus 353 a 353 (547)
|
T Consensus 425 A 425 (432)
T TIGR02259 425 A 425 (432)
T ss_pred H
Confidence 4
No 147
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.96 E-value=6.1e-05 Score=69.27 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=58.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|....|.|.++..+|. .+.++-|..+. . .++..
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------~-~l~~~ 130 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------T-GASDE 130 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------h-hhHHh
Confidence 468999999 9999999999999999998875 46666665542 1 45567
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
|++. .+|+.+|+ ++|+++....+..
T Consensus 131 f~v~------~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 131 FDTD------ALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEechH
Confidence 8877 58999999 6999999887654
No 148
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.95 E-value=2.4e-05 Score=75.19 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
-.++++..++.|++|| .+.||+|....|.|+.+.++| |+.|+.||.|.... -.||.-. .
T Consensus 136 ~~i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~----------------p~fp~~~-~ 194 (248)
T PRK13703 136 QAIAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVIN----------------PLLPDSR-T 194 (248)
T ss_pred HHHHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCC----------------CCCCCCc-c
Confidence 3467777789999999 899999999999999999998 89999999986321 1233211 3
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHHH
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQ-NLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G-~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+...++.+|+. ..|++||++++. ++.-..+|..+ .+++.+-+.
T Consensus 195 d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~ 238 (248)
T PRK13703 195 DQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFL 238 (248)
T ss_pred ChhHHHhcCCc------ccceEEEEECCCCcEEEEeeccCC----HHHHHHHHH
Confidence 44555889997 489999999985 66656666664 344444433
No 149
>PLN02309 5'-adenylylsulfate reductase
Probab=97.95 E-value=5.1e-05 Score=79.63 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++|+..++.++.|.+|.. +..+++
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---------------------------~~~la~ 415 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---------------------------QKEFAK 415 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------chHHHH
Confidence 5789999999 999999999999999999999877788888776621 123343
Q ss_pred -HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 -SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 -~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|+|. .+||.+++.+...-...+ ....++++.++..++++
T Consensus 416 ~~~~I~------~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLG------SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCc------eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHh
Confidence 58887 589999996544322222 12356888998888875
No 150
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.95 E-value=0.00013 Score=57.85 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=54.2
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.|..|| ++|||+|....+.+.++.++++. .+.++-|..+. +.+..++|++
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~v 51 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------NPQKAMEYGI 51 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------CHHHHHHcCC
Confidence 467888 99999999999999999988853 35666554432 2345678998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
. .+|+.++ +|+. .+.|.. +.+++.+.|++
T Consensus 52 ~------~vPt~~~---~g~~--~~~G~~----~~~~l~~~l~~ 80 (82)
T TIGR00411 52 M------AVPAIVI---NGDV--EFIGAP----TKEELVEAIKK 80 (82)
T ss_pred c------cCCEEEE---CCEE--EEecCC----CHHHHHHHHHh
Confidence 7 4899775 5664 343433 34566666554
No 151
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.91 E-value=5.6e-05 Score=62.83 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTD 427 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d 427 (547)
+++++|+|| ++||++|....|.+.++.+.++. ..+.+..|.++
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 588999999 99999999999999999999875 34556555543
No 152
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.85 E-value=8.2e-05 Score=63.47 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=65.3
Q ss_pred HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC---------------
Q psy224 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--------------- 471 (547)
Q Consensus 407 l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--------------- 471 (547)
|.+..+++++.|+++++|++.+++..++|++.. .+++|++.|++.++.+++|+.....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 667788999999999999999987799999875 8999999999999999999775210
Q ss_pred -------C----------cceeEEEEEcCCCcEEEEEe
Q psy224 472 -------G----------IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 472 -------g----------~~~p~~~lid~~G~v~~~~~ 492 (547)
+ .....+||+|++|+|++.|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0 11235899999999999984
No 153
>PTZ00102 disulphide isomerase; Provisional
Probab=97.80 E-value=8.7e-05 Score=79.90 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.||+++|+|| ++||++|+...|.+.++.+.+++.+ +.++-+..+. +...+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~----------------------------~~~~~ 424 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA----------------------------NETPL 424 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------Cccch
Confidence 5799999999 9999999999999999999887543 4555444432 22345
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|+.+++++++++...+.|.. +.+++.+.|++..
T Consensus 425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G~~----~~~~l~~~i~~~~ 465 (477)
T PTZ00102 425 EEFSWS------AFPTILFVKAGERTPIPYEGER----TVEGFKEFVNKHA 465 (477)
T ss_pred hcCCCc------ccCeEEEEECCCcceeEecCcC----CHHHHHHHHHHcC
Confidence 677776 5899999998887755664443 5677777777544
No 154
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.76 E-value=0.00074 Score=67.49 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=57.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 278 ITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGIN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 278 l~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
+.... +++++..++..+++.++... .+++..++ .|++.||- ++|..+.+.+.+.+++.|.+++.+..|.|
T Consensus 311 ~~~G~-~~EdI~AGl~~Sv~~~v~~~----~~~~~~i~~~iv~~GGv-a~n~av~~ale~~lg~~V~vP~~~ql~GA 381 (396)
T COG1924 311 LAEGA-SPEDILAGLAYSVAENVAEK----VIKRVDIEEPIVLQGGV-ALNKAVVRALEDLLGRKVIVPPYAQLMGA 381 (396)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHHH----HhhccCCCCCEEEECcc-hhhHHHHHHHHHHhCCeeecCCccchhhH
Confidence 45555 89999999999998877662 13454544 49999995 99999999999999999999999998876
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=97.70 E-value=0.00021 Score=66.97 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=52.3
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
..+|++|| ++|||+|....+.|.++.++|. .++++-|..| |
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~ 58 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------D 58 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------c
Confidence 45788999 9999999999999999999885 4666555321 7
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|. .+|+++++ ++|+++.+..|..
T Consensus 59 ~V~------~vPtfv~~-~~g~~i~r~~G~~ 82 (204)
T PTZ00062 59 ANN------EYGVFEFY-QNSQLINSLEGCN 82 (204)
T ss_pred Ccc------cceEEEEE-ECCEEEeeeeCCC
Confidence 877 68999999 5999999986543
No 156
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.67 E-value=0.00014 Score=62.66 Aligned_cols=93 Identities=9% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
-++|+++|+|+ +.||++|...-..+- .-..++-+++ ++.|..+.... +. +.. +
T Consensus 21 ~~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~--------~~~-~-------- 75 (130)
T cd02960 21 KSNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK--------NLS-P-------- 75 (130)
T ss_pred HCCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC--------CcC-c--------
Confidence 36899999999 999999988766532 1112222223 34444432101 00 111 0
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~ 510 (547)
.+ ..+|+++++|++|+++....|..+. ..+++.+.+-.++
T Consensus 76 ----~g-------~~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 76 ----DG-------QYVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred ----cC-------cccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 11 1479999999999999888665432 2255566555443
No 157
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=97.66 E-value=2.6e-05 Score=52.40 Aligned_cols=25 Identities=44% Similarity=0.925 Sum_probs=22.3
Q ss_pred hhHhhhhcCccccCCccCCCccccc
Q psy224 510 AFQFVAEHGEVCPAGWKPGSKTMKA 534 (547)
Q Consensus 510 ~l~~~~~~~~~~~~~w~~~~~~~~~ 534 (547)
+||.+.++++.||+||++|+++|++
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivp 25 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVP 25 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-
T ss_pred CceehhhhCcccCcCCCCCCCeEcC
Confidence 4788999999999999999999965
No 158
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.66 E-value=0.00025 Score=62.32 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=87.3
Q ss_pred cCCCCCCeeecc----ccCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH-HhhCCcEEEEE-eCC
Q psy224 357 LEKPAPEFEGQA----VVNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEE-FKKINTQVIAC-STD 427 (547)
Q Consensus 357 ~g~~~p~~~l~~----~~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~-~~~~~~~vi~i-s~d 427 (547)
+|.++|.+++.+ .++|+ .++.+.+.+.||+.||... |--...-....|-+.++.+. |.....+..+| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 677888887765 12221 2345556678998877766 33332222224444455444 55555665555 343
Q ss_pred C-h----hhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 428 S-H----FSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 428 ~-~----~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
+ . .-.+...++.+ +.+++. ++.|.++.+.++|++... .-+.+|+|++|+|++...|..++. ++
T Consensus 82 DAi~gt~~fVrss~e~~k-----k~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls~~-Ev 150 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSK-----KEFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALSPA-EV 150 (160)
T ss_pred cccccchHHHHHHHHHhh-----hhCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCCHH-HH
Confidence 2 1 12233333321 156777 578999999999998742 356889999999999998888755 57
Q ss_pred HHHHHHHH
Q psy224 502 DETLRLVQ 509 (547)
Q Consensus 502 ~~il~~l~ 509 (547)
+++++.|+
T Consensus 151 ~qVi~Ll~ 158 (160)
T PF09695_consen 151 QQVIALLK 158 (160)
T ss_pred HHHHHHHh
Confidence 77777765
No 159
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.64 E-value=0.00028 Score=75.54 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++++++|+|| ++||++|....|.+.++++.+++.+ +.++.|.++ .+.++
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 67 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT----------------------------EEKDL 67 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC----------------------------CcHHH
Confidence 4678999999 9999999999999999999988665 555555443 23578
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++.|++. .+|+.+++ ++|+. +..+.|.. +.+++.+.++..
T Consensus 68 ~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g~~----~~~~l~~~i~~~ 108 (462)
T TIGR01130 68 AQKYGVS------GYPTLKIF-RNGEDSVSDYNGPR----DADGIVKYMKKQ 108 (462)
T ss_pred HHhCCCc------cccEEEEE-eCCccceeEecCCC----CHHHHHHHHHHh
Confidence 8899998 58988888 57776 56665543 345555555543
No 160
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.64 E-value=0.00032 Score=65.44 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=62.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....+.|.+++.+|. .+.++-|..+. ...
T Consensus 101 ~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~-------------------------------~~~ 146 (192)
T cd02988 101 KDTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ-------------------------------CIP 146 (192)
T ss_pred CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-------------------------------hHh
Confidence 3568999999 9999999999999999999985 46666655431 124
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC---CCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG---RSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~---~~~~~il~~l 508 (547)
.|++. ..|+.+++ ++|+++...+|..+.+ ...+++-..|
T Consensus 147 ~~~i~------~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L 188 (192)
T cd02988 147 NYPDK------NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLL 188 (192)
T ss_pred hCCCC------CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHH
Confidence 67766 48999999 6999999998765443 2344444444
No 161
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.63 E-value=0.00045 Score=54.11 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHh
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFK 415 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~ 415 (547)
.|.|| ++|||+|....|.+.++.+++.
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC
Confidence 37889 9999999999999999998874
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.60 E-value=0.0004 Score=59.06 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=61.3
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHH-HH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIA-FS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~-l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
+.-++|+++|+|+ +.||+.|...... ++ ++.+.+.+ ++.++.+..+.+ .
T Consensus 13 Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~--------------------------e 64 (114)
T cd02958 13 AKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS--------------------------E 64 (114)
T ss_pred HHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc--------------------------c
Confidence 3336899999999 9999999876443 21 22222222 333333333221 1
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++++.|++. ..|+.+++|+ +|+++....|..+ .++.++.|++.
T Consensus 65 ~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~ 110 (114)
T cd02958 65 GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF 110 (114)
T ss_pred HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence 24566778876 5899999999 8999999976663 56777776654
No 163
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.60 E-value=0.00047 Score=64.49 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=85.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC---cEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN---TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~---~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.-.+.+.+|+|+||-+. .++|..|..++.+|..|..+|++.| +.++.|+.........+.+...+. ...||+
T Consensus 18 ~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~----~~~ipV 92 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRV----SEHIPV 92 (238)
T ss_pred chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhC----CCCCce
Confidence 45688889999999999 7799999999999999999998765 577777765433322221111111 455999
Q ss_pred ec-C-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 453 LS-D-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 453 l~-D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+- | ....++..++-.+++ +||+|+-|++.+...-+.+.- ...-+.++|+...
T Consensus 93 yqq~~~q~dvW~~L~G~kdD-------~~iyDRCGrL~~~i~~P~S~l-~~~~ve~Ai~~ty 146 (238)
T PF04592_consen 93 YQQDENQPDVWELLNGSKDD-------FLIYDRCGRLTYHIPLPYSFL-QFPYVEAAIKSTY 146 (238)
T ss_pred ecCCccccCHHHHhCCCcCc-------EEEEeccCcEEEEecCcHHHh-cCHHHHHHHHHHH
Confidence 85 3 347888888877544 899999999999984343322 2334445555433
No 164
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.56 E-value=0.0009 Score=63.89 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCCCeEEEEEEeC---CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPL---DFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~---~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
..++...++.|+ + +|||+|....|.+.++.+++. ++++..+..|. |.+
T Consensus 16 ~~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~--------------------------~~~ 66 (215)
T TIGR02187 16 ELKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT--------------------------PED 66 (215)
T ss_pred hcCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC--------------------------ccc
Confidence 345555677787 7 999999999999999998874 35555555543 235
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCC
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDL 495 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~ 495 (547)
.++++.|++. ..|+.++++ +|+.+ .++.|..
T Consensus 67 ~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~~ 98 (215)
T TIGR02187 67 KEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGIP 98 (215)
T ss_pred HHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeecC
Confidence 6889999998 589999996 67776 4676644
No 165
>PTZ00102 disulphide isomerase; Provisional
Probab=97.55 E-value=0.00038 Score=74.90 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=64.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+++.++|.|| ++||++|....|.+.++.+.+++.+ +.+.-|.+ +.+.++
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~----------------------------~~~~~l 98 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA----------------------------TEEMEL 98 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC----------------------------CCCHHH
Confidence 5788999999 9999999999999999988886543 34443332 234678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|++. .+|+.++++.+ +.+ .+.|. ++.+++.+.+++..
T Consensus 99 ~~~~~i~------~~Pt~~~~~~g-~~~-~y~g~----~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 99 AQEFGVR------GYPTIKFFNKG-NPV-NYSGG----RTADGIVSWIKKLT 138 (477)
T ss_pred HHhcCCC------cccEEEEEECC-ceE-EecCC----CCHHHHHHHHHHhh
Confidence 8999987 58999999755 444 55343 35667777766543
No 166
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.48 E-value=0.0031 Score=64.62 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC-cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGI-NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
++++++.++..+++-.+... .+++.++ ++|+++||. ++|+.+.+.+.+.++.++.+++.+..+.|
T Consensus 329 ~~eDIaAGl~~SIa~rv~~~----l~~~~~i~~~VvftGGv-a~N~gvv~ale~~Lg~~iivPe~pq~~GA 394 (404)
T TIGR03286 329 SPEDVAAAACHSVAEQVYEQ----QLQEIDVREPVILVGGT-SLIEGLVKALGDLLGIEVVVPEYSQYIGA 394 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhhcCCCCCcEEEECCh-hhhHHHHHHHHHHhCCcEEECCcccHHHH
Confidence 89999999999999888752 1344554 469999996 99999999999999999999999888765
No 167
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.00044 Score=63.47 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHhCCceEEecchhhhhhh--hccCCC-CCCeeeccccCCceeeEeccCC-CCCeEEEE--EEe----CCC
Q psy224 327 NHILQHYIERIYGLQLIVEQDQAMRDAS--YALEKP-APEFEGQAVVNGQFKNIKLSQY-KGQYVVLF--FYP----LDF 396 (547)
Q Consensus 327 ~~~~~q~~Ad~l~~~v~~~~~~~~~~a~--~~~g~~-~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~--f~~----~~~ 396 (547)
+..|...--+.|.+........+..++. .+++-. --++.++. .+| +.+|+|+ .||-.||. |+. ..-
T Consensus 15 ~e~w~~AR~~lL~kEkeLtR~rd~vaaeRR~LPw~~V~K~Y~Fe~-~~G---~~sLadLF~grsqLIvYhfmF~P~~~~~ 90 (247)
T COG4312 15 REEWLAAREALLAKEKELTRARDAVAAERRALPWGEVDKDYVFET-ENG---KKSLADLFGGRSQLIVYHFMFGPGWDHG 90 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceecceeEeec-CCc---chhHHHHhCCCceEEEEEEecCCCccCC
Confidence 3455555555555444433333222211 112221 12455555 667 7899998 77644433 322 347
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC----C
Q psy224 397 TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET----G 472 (547)
Q Consensus 397 cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~----g 472 (547)
||.|..-+..+.-....+...++.+++||--+.+++..+.+.. ++.||.+++.+..+-+.|.+.+.+. |
T Consensus 91 C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm-------GW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G 163 (247)
T COG4312 91 CPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM-------GWQFPWVSSTDSDFNRDFQVSFTEDQQAPG 163 (247)
T ss_pred CCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc-------CCcceeEeccCcccccccccccchhhccCc
Confidence 9999999999988888888899999999999999999998876 9999999999999999998865432 1
Q ss_pred -------------ccee--EEEEEcCCCcEEEEE
Q psy224 473 -------------IPYR--GLFIIDDKQNLRQIT 491 (547)
Q Consensus 473 -------------~~~p--~~~lid~~G~v~~~~ 491 (547)
.-.| +.|.=+.+|+|-+.+
T Consensus 164 ~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty 197 (247)
T COG4312 164 VVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTY 197 (247)
T ss_pred eeEeecccCCCccccCCCeeEEEEcCCCcccccc
Confidence 1111 245447788888777
No 168
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.43 E-value=0.0029 Score=62.28 Aligned_cols=68 Identities=19% Similarity=0.374 Sum_probs=52.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC-cEEEeeCCchhhcHHHHHHHHHHhCCceE-Eecchhhhhh
Q psy224 279 TIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGI-NRIIGIGSCLTRNHILQHYIERIYGLQLI-VEQDQAMRDA 353 (547)
Q Consensus 279 ~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~-~~~~~~~~~a 353 (547)
.... .++++++++..+++-.+...+ +..++ ++|+++||. ++|+.+.+.+.+.++.++. .+..+..+.|
T Consensus 210 ~~G~-~~edI~aGl~~sia~rv~~~~-----~~~~i~~~v~~~GGv-a~N~~l~~al~~~Lg~~v~~~p~~p~~~GA 279 (293)
T TIGR03192 210 KAGY-TKNMVIAAYCQAMAERVVSLL-----ERIGVEEGFFITGGI-AKNPGVVKRIERILGIKAVDTKIDSQIAGA 279 (293)
T ss_pred HCCC-CHHHHHHHHHHHHHHHHHHHh-----cccCCCCCEEEECcc-cccHHHHHHHHHHhCCCceeCCCCccHHHH
Confidence 4444 899999999999997764433 34453 579999995 9999999999999999988 4555666554
No 169
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.33 E-value=0.0012 Score=53.37 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=51.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+.++++.+.|..|+ +.||++|+...+.+.++.+++. ++++..+..+ ...
T Consensus 7 ~~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~----------------------------~~~ 55 (89)
T cd03026 7 IRRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA----------------------------LFQ 55 (89)
T ss_pred HHhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH----------------------------hCH
Confidence 34667777888888 9999999999888888886653 3444444332 235
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEE
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
+.+..|++. ..|++++ +|++++.
T Consensus 56 e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 DEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred HHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 677899998 5899864 6887764
No 170
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.33 E-value=0.0015 Score=49.61 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=42.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.|..|+ ++|||+|....+.|+++.+++ .++++.-+..+ .++++++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~----------------------------~~~~l~~~~~i 50 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA----------------------------EFPDLADEYGV 50 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc----------------------------cCHhHHHHcCC
Confidence 477888 999999999988888886543 24555444332 23456778888
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. ..|+.+ + +|++++.
T Consensus 51 ~------~vPti~-i--~~~~~~~ 65 (67)
T cd02973 51 M------SVPAIV-I--NGKVEFV 65 (67)
T ss_pred c------ccCEEE-E--CCEEEEe
Confidence 6 478865 4 4566543
No 171
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.27 E-value=0.0013 Score=48.25 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
|+.|| ..||+.|....+.+.++ ++...+++++.++.+.....
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 42 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPAL 42 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHH
Confidence 47788 99999999999999998 56667899999998875443
No 172
>PHA02125 thioredoxin-like protein
Probab=97.24 E-value=0.0034 Score=48.90 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCc
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~ 467 (547)
|++|+ ++||++|+...|.|.++. +.++ . +-.|...+++++|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~------------------------~----vd~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYV------------------------D----VDTDEGVELTAKHHIR 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEE------------------------e----eeCCCCHHHHHHcCCc
Confidence 68899 999999999888775431 1111 1 1124567899999998
Q ss_pred ccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 468 NEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 468 ~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+|+.+ +|+.+....|.. +++.++.+.|
T Consensus 46 ------~~PT~~----~g~~~~~~~G~~---~~~~~l~~~~ 73 (75)
T PHA02125 46 ------SLPTLV----NTSTLDRFTGVP---RNVAELKEKL 73 (75)
T ss_pred ------eeCeEE----CCEEEEEEeCCC---CcHHHHHHHh
Confidence 589865 577777775532 2455555544
No 173
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.16 E-value=0.00049 Score=59.80 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=46.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++.+..+..++.|. .+|||.|...+|.|.++.+.-. ++++=.++.|. +.
T Consensus 36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~----------------------------~~ 84 (129)
T PF14595_consen 36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE----------------------------NK 84 (129)
T ss_dssp HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH----------------------------HH
T ss_pred HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC----------------------------Ch
Confidence 44455667899999 9999999999999999998754 44443333322 12
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
++..+|-. ..+..+|+.+++|++|+++.++ ++.+
T Consensus 85 el~~~~lt---~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 85 ELMDQYLT---NGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp HHTTTTTT----SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred hHHHHHHh---CCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 22222221 1123589999999999999999 4443
No 174
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.09 E-value=0.0026 Score=52.65 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.|+++++.|+ +.||++|....+.+.++.++|+. .+.++-|..+. ...+++
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~----------------------------~~~~~~ 60 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD----------------------------FGRHLE 60 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh----------------------------hHHHHH
Confidence 3789999999 99999999999999999999974 35666554432 234667
Q ss_pred HhCCcccCCCcceeEEEEEcCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK 484 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~ 484 (547)
.||+... ..|+.++++..
T Consensus 61 ~~~i~~~----~~P~~~~~~~~ 78 (103)
T cd02982 61 YFGLKEE----DLPVIAIINLS 78 (103)
T ss_pred HcCCChh----hCCEEEEEecc
Confidence 7777621 37998888763
No 175
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.07 E-value=0.051 Score=53.52 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhC---CceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYG---LQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~---~~v~~~~~~~~~~a 353 (547)
.+++|++++++..++.++-+..- .... .+.++|+..||-+..++..++.++..+. ..+..++..+...|
T Consensus 201 ~~~eDiAaSLl~mV~~nIg~lA~--~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gA 273 (279)
T TIGR00555 201 FSPEDIAASLLGLIGNNIGQIAY--LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGA 273 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHH
Confidence 47999999999999998877654 1222 4588999999965789999999988776 44666666666544
No 176
>KOG0908|consensus
Probab=97.04 E-value=0.0024 Score=60.00 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=58.2
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
+.--+|.++|.|. ++||.+|..-.|.++.+.++|. +..++=|.+|. -+.
T Consensus 17 s~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c~~ 65 (288)
T KOG0908|consen 17 SAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------CRG 65 (288)
T ss_pred hccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------hhc
Confidence 3334689999999 9999999999999999999995 55665554433 234
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
++..+||. +.||++++ ++|.-+....|
T Consensus 66 taa~~gV~------amPTFiff-~ng~kid~~qG 92 (288)
T KOG0908|consen 66 TAATNGVN------AMPTFIFF-RNGVKIDQIQG 92 (288)
T ss_pred hhhhcCcc------cCceEEEE-ecCeEeeeecC
Confidence 55678887 68998888 68888877743
No 177
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.86 E-value=0.0037 Score=66.86 Aligned_cols=89 Identities=10% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.++.++|+|| ++||++|....|.+.++.++++.. ++.++.|.++.. ++
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-----------------------------~~ 412 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-----------------------------DV 412 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-----------------------------cc
Confidence 4789999999 999999999999999999999862 577777765421 01
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.. |++. .+|+.++++++++. ...+.| .++.+++++.|++..
T Consensus 413 ~~-~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 413 PP-FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHA 454 (462)
T ss_pred CC-CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcC
Confidence 11 5555 48999999766653 233333 235778888877544
No 178
>smart00594 UAS UAS domain.
Probab=96.86 E-value=0.0063 Score=52.42 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-H--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF-S--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l-~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|.++|+|+ +.||+.|......+ . ++.+.+ ++++.++.+..+.. ...+
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~--------------------------eg~~ 77 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTS--------------------------EGQR 77 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCCh--------------------------hHHH
Confidence 5789999999 99999998875542 1 222222 22444444433321 1256
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCC-----cEEEEEecCCCCCCCHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQ-----NLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G-----~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+++.|++. ..|+..++|++| +++....|.. +.++++..|
T Consensus 78 l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~----~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEI----SPEELMTFL 121 (122)
T ss_pred HHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCC----CHHHHHHhh
Confidence 77888887 489999999997 2333333333 467777654
No 179
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.77 E-value=0.015 Score=55.43 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=51.7
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+..+.+.|+.|| ++|||+|+...+.++++..+.. .+.+.-| | .|.+.++
T Consensus 130 ~~~~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~v--D--------------------------~~~~~~~ 178 (215)
T TIGR02187 130 SLDEPVRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMI--E--------------------------ANENPDL 178 (215)
T ss_pred hcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEE--e--------------------------CCCCHHH
Confidence 344455666688 9999999987777766665421 2332222 1 1235778
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
++.|++. .+|+.++. ++|+. +.|.. ..+++.+.|.
T Consensus 179 ~~~~~V~------~vPtl~i~-~~~~~---~~G~~----~~~~l~~~l~ 213 (215)
T TIGR02187 179 AEKYGVM------SVPKIVIN-KGVEE---FVGAY----PEEQFLEYIL 213 (215)
T ss_pred HHHhCCc------cCCEEEEe-cCCEE---EECCC----CHHHHHHHHH
Confidence 8899998 58998765 56753 44433 2345555554
No 180
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=96.67 E-value=0.16 Score=53.61 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhh--hhhhcC-----CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRS--VLHRSG-----INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~--~l~~~g-----~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
...+++++-+|.+.-.+++.++.. .+++.+ +..|+++||+ ++-+.+.+++.+.++.|+.+..
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~-a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGA-AQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCch-hccccHHHHHHHHhCCCeEEeC
Confidence 356778888888877777766421 123333 4579999998 9999999999999999998865
No 181
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.65 E-value=0.0039 Score=51.93 Aligned_cols=48 Identities=29% Similarity=0.481 Sum_probs=40.1
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.....+++++++.|| +.|||+|...+|.+.++.+++.. .+.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344445889999999 99999999999999999999976 5777777764
No 182
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=96.64 E-value=0.013 Score=56.83 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hC--CcEEEEEeCCChhhHHH
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KI--NTQVIACSTDSHFSHLA 434 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~--~~~vi~is~d~~~~~~~ 434 (547)
..+|++...+ ++| +.+++.+. +||+.||..+...|-..|....-. ...++|. .. .++++-|+....- .+.
T Consensus 99 lyFP~l~g~t-L~g--~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k~ 172 (252)
T PF05176_consen 99 LYFPNLQGKT-LAG--NKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LKS 172 (252)
T ss_pred CcCCCCcccc-CCC--CCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HHH
Confidence 3689999998 888 47777665 899998888856666555555332 3334443 33 6899999875421 111
Q ss_pred Hh-----hccccCCCCC-CcceeeecCC--ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 435 WC-----NIPRNKGGLG-DMAIPILSDK--SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 435 ~~-----~~~~~~~~~~-~~~fp~l~D~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|+ ...++..... ...|-+..+. ...+-+.+++.... .-.+||||.+|+||+.-.|..++. .++.+.+
T Consensus 173 ~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At~~-E~~~L~k 247 (252)
T PF05176_consen 173 WLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPATPE-ELESLWK 247 (252)
T ss_pred HHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCCHH-HHHHHHH
Confidence 11 1112221111 3334444433 46788889988543 566999999999999997766533 3344444
Q ss_pred HH
Q psy224 507 LV 508 (547)
Q Consensus 507 ~l 508 (547)
.+
T Consensus 248 ~~ 249 (252)
T PF05176_consen 248 CV 249 (252)
T ss_pred HH
Confidence 33
No 183
>KOG4498|consensus
Probab=96.46 E-value=0.018 Score=52.01 Aligned_cols=131 Identities=14% Similarity=0.226 Sum_probs=88.3
Q ss_pred cCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCc
Q psy224 370 VNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 370 ~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~ 448 (547)
..| +.+.+.++ +.+..+|.|-+-.-|-.|+.+...|..+.+-+++.|+.+|+|-..+....+.|.++. .+
T Consensus 37 ~rg--~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f 107 (197)
T KOG4498|consen 37 SRG--ESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YF 107 (197)
T ss_pred hcC--ceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Cc
Confidence 456 58999888 667788999989999999999999999988888999999999864444444444432 23
Q ss_pred ceeeecCCChHHHHHhCCc----------------------ccCC----CcceeEEEEEcCCCcEEEEEecCC-CCCCCH
Q psy224 449 AIPILSDKSMSIARSYGVL----------------------NEET----GIPYRGLFIIDDKQNLRQITINDL-PVGRSV 501 (547)
Q Consensus 449 ~fp~l~D~~~~~~~~~~v~----------------------~~~~----g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~ 501 (547)
.=.++.|++..+...++.. ...+ +......+++.+.++|.+.+.... .+..++
T Consensus 108 ~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i 187 (197)
T KOG4498|consen 108 SGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPI 187 (197)
T ss_pred ceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCH
Confidence 3356666654433333221 1110 122344788888889999996443 234478
Q ss_pred HHHHHHHH
Q psy224 502 DETLRLVQ 509 (547)
Q Consensus 502 ~~il~~l~ 509 (547)
+++++.+.
T Consensus 188 ~~Vl~v~~ 195 (197)
T KOG4498|consen 188 DSVLQVVG 195 (197)
T ss_pred HHHHHHhh
Confidence 88887754
No 184
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.44 E-value=0.01 Score=47.08 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
.+|+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 5899999999 99999999887665 22333233 46777777665543
No 185
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.22 E-value=0.045 Score=46.37 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.+.+||-|+ ++| |.|-. .|...++..+|.+. .+.+.-|.++..... .+.++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~-----------------------~~~~L 70 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEK-----------------------LNMEL 70 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccch-----------------------hhHHH
Confidence 4578899999 966 66665 48888888888543 244444443321110 24689
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++|+|..+ .+|+.+++. +|.. ...+.| .+|..+.|++.+++
T Consensus 71 ~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y~G---~~r~~~~lv~~v~~ 114 (116)
T cd03007 71 GERYKLDKE----SYPVIYLFH-GGDFENPVPYSG---ADVTVDALQRFLKG 114 (116)
T ss_pred HHHhCCCcC----CCCEEEEEe-CCCcCCCccCCC---CcccHHHHHHHHHh
Confidence 999999732 389999995 5531 122211 22678888877654
No 186
>KOG0190|consensus
Probab=96.21 E-value=0.012 Score=61.81 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
...++|-|| |.||.+|....|++.+....+.+.+-.+-..-+|. ..++.++.+
T Consensus 42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa--------------------------t~~~~~~~~ 94 (493)
T KOG0190|consen 42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA--------------------------TEESDLASK 94 (493)
T ss_pred CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec--------------------------chhhhhHhh
Confidence 356788899 99999999999999999999986531111111111 134788999
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|++. .+||.-|+ ++|+....+.| .|..+.|+.-|++-.
T Consensus 95 y~v~------gyPTlkiF-rnG~~~~~Y~G----~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 95 YEVR------GYPTLKIF-RNGRSAQDYNG----PREADGIVKWLKKQS 132 (493)
T ss_pred hcCC------CCCeEEEE-ecCCcceeccC----cccHHHHHHHHHhcc
Confidence 9998 58998877 79998555533 346788888877644
No 187
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.60 E-value=0.11 Score=44.23 Aligned_cols=88 Identities=10% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCeEEEEEEeCC----CCCCcHHHH--HHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYPLD----FTFVCPTEI--IAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~~~----~cp~C~~~~--~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.+|.++|+++ .. ||-.|+..+ |++.+..+ .++-+++.+.+.++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e-------------------------- 64 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE-------------------------- 64 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH--------------------------
Confidence 5799999999 88 677776553 34444443 35555555554432
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEE---cCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFII---DDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~li---d~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++++.+++. .+|+..++ +.+.+|+.+..|.. +.++++..|+.+
T Consensus 65 g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~----~~~~ll~~L~~~ 112 (116)
T cd02991 65 GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLI----QPEDLINRLTFI 112 (116)
T ss_pred HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 25788888887 58999999 66677788887766 466777777654
No 188
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=95.41 E-value=0.028 Score=46.11 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESK 34 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~ 34 (547)
.+||||+|+|.+|++++|.+|++ +.....
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~-~~~~~~ 30 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKL-ADPLEV 30 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCE-ecCEEE
Confidence 38999999999999999999997 654443
No 189
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.29 E-value=0.087 Score=47.32 Aligned_cols=104 Identities=6% Similarity=-0.044 Sum_probs=47.4
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHH------HHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcce
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEII------AFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI 450 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~f 450 (547)
+..+.-.+|+++|.++ .+||..|+.... ++.++.++ ++.-|-|..+...++.....
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN~----~FI~VkvDree~Pdid~~y~------------- 91 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLNR----NFIPVKVDREERPDIDKIYM------------- 91 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHHH----H-EEEEEETTT-HHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHhC----CEEEEEeccccCccHHHHHH-------------
Confidence 3344446899999999 999999987643 22222222 22222222222222221111
Q ss_pred eeecCCChHHHHH-hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC----CCHHHHHHHHHhhH
Q psy224 451 PILSDKSMSIARS-YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG----RSVDETLRLVQAFQ 512 (547)
Q Consensus 451 p~l~D~~~~~~~~-~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~----~~~~~il~~l~~l~ 512 (547)
...+. .|.- .+|++++++++|+..+...+-.+.. ..+.++|+.+.++-
T Consensus 92 --------~~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 92 --------NAVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp --------HHHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred --------HHHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 11111 1332 4899999999999998874333221 24566666655443
No 190
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=94.92 E-value=0.091 Score=44.84 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=72.0
Q ss_pred eccCCCCCeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 378 KLSQYKGQYV-VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 378 ~l~~~~gk~~-ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.|+++++|-. ||+|-|...-+.-..++..|.+....+.++.+.++.+..+...... .++-...
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence 3667777533 4444444444555667778888777888888988888554432211 0010112
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
...+.+.|++.. ..-+.+||++||.+..++..+. +.+++-+.+.+.+-
T Consensus 66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MPm 113 (118)
T PF13778_consen 66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMPM 113 (118)
T ss_pred HHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCcc
Confidence 368888898873 2467999999999999984333 57788888776653
No 191
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=94.82 E-value=0.061 Score=52.84 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-hhcCCcEEEeeCCchhhc-HHHHHHHHHHhCCce
Q psy224 288 LFVALCEGIINNIHDIMNRSVL-HRSGINRIIGIGSCLTRN-HILQHYIERIYGLQL 342 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l-~~~g~~~I~~~GG~~~k~-~~~~q~~Ad~l~~~v 342 (547)
....+++-.+..+...+++ + ...+..++.+.||. .++ +.|....-..+..+.
T Consensus 224 ~A~~Il~~aa~~i~~~~~~--l~~~~g~~~l~l~GG~-~~~~~~~~~~~~~~l~~~~ 277 (301)
T COG2971 224 VAIRILKEAAAYIATLLEA--LSIFNGSEKLSLLGGL-APSYPYYLSLFRRALLVPP 277 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccCCceEEEeccc-cccchhhHHHHHHHhcCCc
Confidence 3446777777888888874 5 35567899999995 665 788877776666655
No 192
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.61 E-value=0.07 Score=56.91 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHH-HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIA-FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~-l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
-++|+++|+|+ |.||-.|+..-+. +++-..+++-.|+..+=...... ...+.++
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~------------------------~p~~~~l 526 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN------------------------DPAITAL 526 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC------------------------CHHHHHH
Confidence 35579999999 9999999876443 43444444444444443322110 1123677
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.++|++. ..|+.++++++|+-.....+-. +.+..++.+++
T Consensus 527 Lk~~~~~------G~P~~~ff~~~g~e~~~l~gf~----~a~~~~~~l~~ 566 (569)
T COG4232 527 LKRLGVF------GVPTYLFFGPQGSEPEILTGFL----TADAFLEHLER 566 (569)
T ss_pred HHHcCCC------CCCEEEEECCCCCcCcCCccee----cHHHHHHHHHH
Confidence 7889988 5899999999998776632223 34455555543
No 193
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.46 E-value=0.37 Score=36.42 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|+ ++|||+|....+.|.+ .++.+..+..+.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 45667 9999999987665543 467776665544
No 194
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.37 Score=42.39 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=61.7
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
....+|+.++.|- ...|++|...-..+ .++++.+.. .+.++-+........ .|.. +.. ...-+
T Consensus 38 i~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv-~f~~---------g~k--ee~~s 103 (182)
T COG2143 38 ISPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPV-LFKV---------GDK--EEKMS 103 (182)
T ss_pred cCccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcce-Eeec---------Cce--eeeec
Confidence 3446899999999 99999997664433 344544443 355544443221111 1111 111 11113
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
..++++.|++. +.|+.++.|++|+-+...-|..+
T Consensus 104 ~~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 104 TEELAQKFAVR------STPTFVFFDKTGKTILELPGYMP 137 (182)
T ss_pred HHHHHHHhccc------cCceEEEEcCCCCEEEecCCCCC
Confidence 57999999998 69999999999999988855564
No 195
>KOG0191|consensus
Probab=94.35 E-value=0.095 Score=54.69 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=50.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++.+|.|| ++||.+|....|.+.++...++. .+....+|. +..+.+.+
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~--------------------------~~~~~~~~ 95 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC--------------------------DEHKDLCE 95 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc--------------------------hhhHHHHH
Confidence 4578899999 99999999999999999988875 222223332 23467788
Q ss_pred HhCCcccCCCcceeEEEEEcCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK 484 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~ 484 (547)
.|++. ..|+..++.++
T Consensus 96 ~y~i~------gfPtl~~f~~~ 111 (383)
T KOG0191|consen 96 KYGIQ------GFPTLKVFRPG 111 (383)
T ss_pred hcCCc------cCcEEEEEcCC
Confidence 88888 47888888766
No 196
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.79 E-value=0.24 Score=48.34 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe-----CCChhh---------HHHHhhccccCCCCCCc
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS-----TDSHFS---------HLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is-----~d~~~~---------~~~~~~~~~~~~~~~~~ 448 (547)
.+|.+|..|. -..||+|+....++..+.+. .++++.-+. .++... ..+..+.+...+...++
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 4678888899 99999999999888776543 125554442 222111 11111111111000011
Q ss_pred ceee--------ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 449 AIPI--------LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 449 ~fp~--------l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
.-+. ..+.+.++++.+|+. ..|+.|+.|.+|++...-
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v~ 236 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQVV 236 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEec
Confidence 1111 112245677788887 589999999999876554
No 197
>KOG1731|consensus
Probab=93.75 E-value=0.04 Score=58.10 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=63.9
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C-cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N-TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~-~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
|.-+|-|| ++||+.|+...|.++++.+.+++- + +.|.+|.+-.. .+..+.+
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~--------------------------~N~~lCR 110 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE--------------------------ENVKLCR 110 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch--------------------------hhhhhHh
Confidence 45689999 999999999999999999888752 2 56777776432 3578888
Q ss_pred HhCCcccCCCcceeEEEEEcCC------CcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDK------QNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~------G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
.|+|. .+|+...+-++ |.-+. ++.......+.+++.|.+..+.
T Consensus 111 ef~V~------~~Ptlryf~~~~~~~~~G~~~~---~~~~~~ei~~~l~~~la~~~~~ 159 (606)
T KOG1731|consen 111 EFSVS------GYPTLRYFPPDSQNKTDGSDVS---GPVIPSEIRDQLIRTLAEEDAQ 159 (606)
T ss_pred hcCCC------CCceeeecCCccccCcCCCccc---CCcchhhHHHHHHHHHHHHHhh
Confidence 99988 47887777665 33332 2222232345555666665554
No 198
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=93.71 E-value=0.084 Score=54.97 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=24.8
Q ss_pred ceEEEEEeCCceeEEEEEec-CCCeeeccccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQA 38 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~ 38 (547)
+|-++||||||++.+.++|. +|++ ++..+...+.
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~-l~~~s~~NpQ 35 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEV-LATASFLNPQ 35 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--E-EEEEEEE-GG
T ss_pred CEEEEEEcchhheeeEEEECCCCCE-EEeecccCCC
Confidence 46789999999999999996 6777 8888777754
No 199
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.70 E-value=0.14 Score=51.91 Aligned_cols=35 Identities=43% Similarity=0.565 Sum_probs=30.9
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccc
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ 37 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~ 37 (547)
++.+++|||||.|++|++++|.+|++ +...+.+++
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~-l~~~~~~~~ 38 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEI-LLRERIPTP 38 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcE-EEEEEEecC
Confidence 36799999999999999999999998 777777774
No 200
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=93.33 E-value=0.65 Score=40.26 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.2
Q ss_pred cCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 454 ~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|.+.+++.+|||. .+|+.+++ ++|+.+....|..+ -+++.+.|+++-
T Consensus 77 iD~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L 124 (132)
T PRK11509 77 LEQSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLV 124 (132)
T ss_pred CCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcCC----HHHHHHHHHHHh
Confidence 35578999999998 58999999 69999999976554 356666666544
No 201
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.32 E-value=0.77 Score=35.64 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCc
Q psy224 394 LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473 (547)
Q Consensus 394 ~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~ 473 (547)
+..||.|+.....+++..+++ ++.+-.+.. .| .+++ ..||+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~---------------------------~~-~~~~-~~ygv~------ 48 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDI---------------------------ED-FEEI-EKYGVM------ 48 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEET---------------------------TT-HHHH-HHTT-S------
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEc---------------------------cC-HHHH-HHcCCC------
Confidence 777999998787777777665 333311111 01 2344 899998
Q ss_pred ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 474 ~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
..|+. +| ||++++. |..+ +.+++.++|+
T Consensus 49 ~vPal-vI--ng~~~~~--G~~p---~~~el~~~l~ 76 (76)
T PF13192_consen 49 SVPAL-VI--NGKVVFV--GRVP---SKEELKELLE 76 (76)
T ss_dssp SSSEE-EE--TTEEEEE--SS-----HHHHHHHHHH
T ss_pred CCCEE-EE--CCEEEEE--ecCC---CHHHHHHHhC
Confidence 58988 56 4777643 3333 3456655553
No 202
>KOG0912|consensus
Probab=93.19 E-value=0.21 Score=48.70 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC---CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI---NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
...+.|+|+ |.||+....-.|.+.+..++|+++ |-.|.+ .+-+|.+..+
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg---------------------------~VDcd~e~~i 64 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG---------------------------KVDCDKEDDI 64 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE---------------------------EcccchhhHH
Confidence 467899999 999999999999999998888743 111111 1224556788
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+.+|.|.+ +||.=|+ ++|.+..+.+.. .|+++.+++-++
T Consensus 65 a~ky~I~K------yPTlKvf-rnG~~~~rEYRg---~RsVeaL~efi~ 103 (375)
T KOG0912|consen 65 ADKYHINK------YPTLKVF-RNGEMMKREYRG---QRSVEALIEFIE 103 (375)
T ss_pred hhhhcccc------Cceeeee-eccchhhhhhcc---chhHHHHHHHHH
Confidence 88999984 8998777 689888755322 234555544444
No 203
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=93.09 E-value=0.2 Score=49.08 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=37.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++|||||.|++|++++|.+|++ +.+.+.+.+ ..+++++.+.+.+.+...
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQR-IWHKRVPTP--------------REDYPQLLQILRDLTEEA 50 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCE-EEEEEecCC--------------CcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999998 766654441 235667777777666544
No 204
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.00 E-value=0.29 Score=41.69 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCeEEEEEEe------CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYP------LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~------~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.++++.|+|.- .+|||.|....|.+.+..+.. ..+..+|-+.+.+. ..|.+ +
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r---~~Wkd------------------p 75 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDR---PEWKD------------------P 75 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H---HHHC-------------------T
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCH---HHhCC------------------C
Confidence 46778888882 259999999999999887773 34778877776543 45543 2
Q ss_pred ChHH--HHHhCCcccCCCcceeEEEEEcCCCc
Q psy224 457 SMSI--ARSYGVLNEETGIPYRGLFIIDDKQN 486 (547)
Q Consensus 457 ~~~~--~~~~~v~~~~~g~~~p~~~lid~~G~ 486 (547)
+... ...+++. .+||.+-++..++
T Consensus 76 ~n~fR~~p~~~l~------~IPTLi~~~~~~r 101 (119)
T PF06110_consen 76 NNPFRTDPDLKLK------GIPTLIRWETGER 101 (119)
T ss_dssp TSHHHH--CC---------SSSEEEECTSS-E
T ss_pred CCCceEcceeeee------ecceEEEECCCCc
Confidence 2222 2247776 5899888876544
No 205
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=92.98 E-value=0.39 Score=41.78 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=76.9
Q ss_pred cCCCCCCeeecc----ccCCc---eeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHH-HHHhhCCcE-EEEEeCC
Q psy224 357 LEKPAPEFEGQA----VVNGQ---FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRA-EEFKKINTQ-VIACSTD 427 (547)
Q Consensus 357 ~g~~~p~~~l~~----~~~G~---~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~-~~~~~~~~~-vi~is~d 427 (547)
++.+.|...+.+ ..+++ .+...-+++.||+.||.-- |--...=....+-+..+. .+|.....+ --.|+.|
T Consensus 25 ~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hi-AGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~D 103 (184)
T COG3054 25 LGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHI-AGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINTD 103 (184)
T ss_pred cCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhh-hcccchhhhchHHHHHHHhccCChHHceeeEEeccC
Confidence 666677665554 11221 2234445678888887655 322221111122233221 122211122 2223444
Q ss_pred C-hhhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy224 428 S-HFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETL 505 (547)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il 505 (547)
+ ..-.-.|.+.-.+.. ++..|+. ++.|..+....+|++.-+ -.+.+++|++|+|.+...|..+.. ++.+++
T Consensus 104 DAi~GtgmFVkssae~~-Kke~pwSq~vlD~~gvak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt~a-evQ~Vi 176 (184)
T COG3054 104 DAIPGTGMFVKSSAESN-KKEYPWSQFVLDSNGVAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALTQA-EVQQVI 176 (184)
T ss_pred Cccccccceeecchhhc-cccCCceeeEEccchhhhhhhccccc-----cceEEEEcCCCcEEEEecCCccHH-HHHHHH
Confidence 3 222223332211111 1145554 567888855558998742 367899999999999998777654 678888
Q ss_pred HHHHhh
Q psy224 506 RLVQAF 511 (547)
Q Consensus 506 ~~l~~l 511 (547)
..|..+
T Consensus 177 ~ll~~l 182 (184)
T COG3054 177 DLLQKL 182 (184)
T ss_pred HHHHHh
Confidence 877654
No 206
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.94 E-value=0.7 Score=44.53 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE--eCC---C--hhh-HHHHhhcc-----ccCCCCCCcc
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC--STD---S--HFS-HLAWCNIP-----RNKGGLGDMA 449 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i--s~d---~--~~~-~~~~~~~~-----~~~~~~~~~~ 449 (547)
.||.+|+.|. -..||+|+...+++.++.+ .+++|..+ ... + ... ..-|+.+- ...+.....+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 4788899999 9999999999888776643 46766554 221 1 111 11222210 0000111111
Q ss_pred e---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 450 I---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 450 f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
- ....+.+.++++++|+. ..|+.+ + ++|+++ .|.. +.+++.+.|++.|
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~------gTPtiv-~-~~G~~~---~G~~----~~~~L~~~l~~~~ 231 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQ------GTPAIV-L-SNGTLV---PGYQ----GPKEMKAFLDEHQ 231 (232)
T ss_pred cccccchHHHhHHHHHHcCCc------cccEEE-E-cCCeEe---eCCC----CHHHHHHHHHHcc
Confidence 1 11123357888889988 589877 3 478765 2222 3456666665443
No 207
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=92.65 E-value=0.28 Score=47.55 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
..++++..++.+.-.+++.+ ++.+++.|+++||+ ++.+.+.+.+.+.++.|+.....+....
T Consensus 171 ~~~~i~~~~~~i~~~i~~~l-----~~~~~~~v~LtGG~-a~ipgl~e~l~~~lg~~v~~~~~P~~~v 232 (239)
T TIGR02529 171 IFPVVKPVYQKMASIVKRHI-----EGQGVKDLYLVGGA-CSFSGFADVFEKQLGLNVIKPQHPLYVT 232 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCCCEEEEECch-hcchhHHHHHHHHhCCCcccCCCCCeeh
Confidence 34556666666666666544 35567899999998 9999999999999999998877665543
No 208
>KOG0190|consensus
Probab=92.01 E-value=0.17 Score=53.46 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~ 417 (547)
.+|-+||-|| |.||++|..-.|.+++|.+.|++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 4688999999 999999999999999999999873
No 209
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.82 E-value=0.28 Score=47.80 Aligned_cols=54 Identities=7% Similarity=0.200 Sum_probs=43.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-C-cEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 279 TIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG-I-NRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 279 ~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~-~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
.... .+++++.++..+++-.+...++ ..+ . ++|+++||. ++|+.+.+.+.+.++
T Consensus 181 ~~G~-~~edI~aGl~~sia~r~~~~~~-----~~~~~~~~v~~~GGv-a~n~~~~~~le~~l~ 236 (262)
T TIGR02261 181 SRGI-SAPNILKGIHESMADRLAKLLK-----SLGALDGTVLCTGGL-ALDAGLLEALKDAIQ 236 (262)
T ss_pred HCCC-CHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCcEEEECcc-cccHHHHHHHHHHhc
Confidence 4444 8999999999999987755444 333 3 469999995 999999999999884
No 210
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=91.69 E-value=0.37 Score=37.06 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=17.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|..|| ++|||+|....+.|.++
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc
Confidence 56788 99999999987766543
No 211
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=91.48 E-value=0.45 Score=46.97 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
...++++..++-+.-.+++.++ +..++.|+++||+ ++.+.+.+++.+.++.|+.....++...
T Consensus 197 ~~~~ii~~~~~~i~~~i~~~l~-----~~~~~~IvLtGG~-s~lpgl~e~l~~~lg~~v~~~~~P~~~~ 259 (267)
T PRK15080 197 EIFPVVKPVVEKMASIVARHIE-----GQDVEDIYLVGGT-CCLPGFEEVFEKQTGLPVHKPQHPLFVT 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCCCEEEEECCc-ccchhHHHHHHHHhCCCcccCCCchHHH
Confidence 3456777777777777666554 3457899999998 9999999999999999999887776544
No 212
>PF13941 MutL: MutL protein
Probab=90.76 E-value=0.23 Score=52.35 Aligned_cols=31 Identities=39% Similarity=0.526 Sum_probs=25.1
Q ss_pred EEEEEeCCceeEEEEEe---cCCCeeecccccccc
Q psy224 6 VLGIDIGTTSVKVCLID---ANTREELSSESKDTQ 37 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d---~~g~~~l~~~~~~~~ 37 (547)
+|.+|||+|.+|+.+|| .+.++ ++..+.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~-ig~a~apTT 35 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL-IGQAEAPTT 35 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE-EEEEeCCCC
Confidence 68899999999999999 34454 888877763
No 213
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.69 E-value=0.87 Score=46.80 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCC-ceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGL-QLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~-~v~~~ 345 (547)
+++|+++-+.|-+|.++.+.++. +... +.+|+++||| ++|+.+++.+...+.. +|...
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~--~~~~-~~~v~v~GGG-a~N~~L~~~L~~~l~~~~v~~~ 316 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRR--FPPQ-PDEVYVCGGG-ARNPFLMERLQERLPGIPVKTT 316 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--H-TT--EEEEEESGG-GG-HHHHHHHHHH-TTCEEEEG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--cCCC-CceEEEECCC-cCCHHHHHHHHhhCCCCEEecH
Confidence 58999999999999999888773 3222 6899999999 9999999999998865 66553
No 214
>PRK09698 D-allose kinase; Provisional
Probab=90.40 E-value=0.61 Score=46.83 Aligned_cols=33 Identities=48% Similarity=0.801 Sum_probs=28.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
..+++|||+|.|++|++++|.+|++ +.+...++
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i-~~~~~~~~ 35 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEI-LHCEKKRT 35 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCE-EEEEEeCC
Confidence 3689999999999999999999998 77666555
No 215
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=90.29 E-value=0.58 Score=47.05 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++|||+|.|++|++++|.+|++ +.+.+.+.+ ..+++++.+.+...+...
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLEL-QWEERVPTP--------------RDSYDAFLDAVCELVAEA 50 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcE-EEEEEecCC--------------CcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999998 766554431 234677888777776644
No 216
>PRK09557 fructokinase; Reviewed
Probab=90.13 E-value=0.62 Score=46.81 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=35.6
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
+||||+|.|++|++++|.+|++ +.+.+.+++ ..+++++.+.+...+..
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i-~~~~~~~~~--------------~~~~~~~~~~i~~~i~~ 49 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEE-LFRKRLPTP--------------RDDYQQTIEAIATLVDM 49 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHHH
Confidence 7999999999999999999998 766554431 13556677766665543
No 217
>PRK00292 glk glucokinase; Provisional
Probab=90.07 E-value=0.31 Score=49.36 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=24.4
Q ss_pred CceEEEEEeCCceeEEEEEec-CCCeeecccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA-NTREELSSESKD 35 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~ 35 (547)
|+++||||||.|++|++++|. .+.+ +...+.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~-~~~~~~~ 33 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEI-EQIKTYA 33 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCce-eeeEEEe
Confidence 457999999999999999995 4544 5554443
No 218
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=3.1 Score=41.87 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY 338 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l 338 (547)
+++++.++..|.+.-.+.+..++ .++..+.++++++||. +.|+.+++++....
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~r-Al~~~~~~~lvi~GGV-aaN~~LR~~l~~~~ 285 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTER-ALKHTGKKELVIAGGV-AANSRLREMLEEMC 285 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCEEEEeccH-HHhHHHHHHHHHHH
Confidence 46679999999998888888877 6888899999999996 99999999988866
No 219
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=89.65 E-value=1.8 Score=35.88 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
..++++|+=. .+.||.....+.++.+.++...+. +.++.+-+-..+. -...++.
T Consensus 18 ~~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~------------------------vSn~IAe 71 (105)
T PF11009_consen 18 KEKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRP------------------------VSNAIAE 71 (105)
T ss_dssp --SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHH------------------------HHHHHHH
T ss_pred ccCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCch------------------------hHHHHHH
Confidence 3577777666 999999999999999888877653 6666664422111 1368999
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.|||..+ -|..+|| ++|++++...
T Consensus 72 ~~~V~He-----SPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 72 DFGVKHE-----SPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHT---------SSEEEEE-ETTEEEEEEE
T ss_pred HhCCCcC-----CCcEEEE-ECCEEEEECc
Confidence 9999974 5999999 5999998874
No 220
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=89.61 E-value=0.7 Score=45.59 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=39.2
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
.++++||||||+++|+++.+.+++. +.....+-.. -..|. -.|.+...+.++.++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~-~~~~~~~~~~-------vr~G~-i~di~~a~~~i~~~~~~ 79 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQP-VAGALEWADV-------VRDGI-VVDFIGAVTIVRRLKAT 79 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCE-EEEEeccccc-------cCCCE-EeeHHHHHHHHHHHHHH
Confidence 4689999999999999999877765 5544433311 13344 67777777777776653
No 221
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.12 E-value=0.95 Score=46.48 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
+++++++-+.|-.|.++.+.+.. +. ...++|+++||| ++|+.+++.+...+..+|..
T Consensus 260 s~~D~~aTlt~~TA~sI~~~~~~--~~-~~~~~vlv~GGG-a~N~~Lm~~L~~~l~~~v~~ 316 (365)
T PRK09585 260 SPEDVQATLTELTAASIARAVRR--LP-PGPDELLVCGGG-ARNPTLMERLAALLPTEVAT 316 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cc-CCCCEEEEECCC-cchHHHHHHHHHhcCCcccC
Confidence 78999999999999999888863 32 224689999999 99999999999988644444
No 222
>PRK12408 glucokinase; Provisional
Probab=88.99 E-value=0.29 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+.++|++|||+|++|.+++|.+|+
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cccEEEEEcChhhhheeEEeccCC
Confidence 345899999999999999998886
No 223
>PRK13318 pantothenate kinase; Reviewed
Probab=88.95 E-value=0.87 Score=44.66 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~ 323 (547)
|...+...++.|++..+...++. +++ .+ .-+|+++||.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~~~~--~~~~~~~~~~vi~TGG~ 224 (258)
T PRK13318 185 TVEAMQSGIYYGYVGLVEGIVKR--IKEELGKDPKVIATGGL 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCEEEEECCc
Confidence 78888889999998888888874 433 44 3479999996
No 224
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=88.94 E-value=0.38 Score=47.51 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.9
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSES 33 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~ 33 (547)
||||.|+|++|++|+|.+|++ +.+..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~i-l~~~~ 26 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNI-LGRGK 26 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEE-EEEEE
T ss_pred CEEeeChheeeeEEEeCCCCE-EEEEE
Confidence 799999999999999999997 65553
No 225
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=88.57 E-value=0.83 Score=41.82 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=38.6
Q ss_pred EEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCch
Q psy224 8 GIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKD 72 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r 72 (547)
|||+|+++++++++|.+|++ +.+.+.+++ .+++++.+.+.+.+..+..+
T Consensus 1 gidig~~~i~~~l~d~~g~i-i~~~~~~~~---------------~~~~~~~~~l~~~i~~~~~~ 49 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEI-IYSESIPTP---------------TSPEELLDALAELIERLLAD 49 (179)
T ss_dssp EEEEESSEEEEEEEETTSCE-EEEEEEEHH---------------SSHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCE-EEEEEEECC---------------CCHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999998 777766651 66777777777776655444
No 226
>PRK13321 pantothenate kinase; Reviewed
Probab=88.44 E-value=1 Score=44.14 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~ 323 (547)
|...+-..++.+++..+...++. .-++.+ .-.|+++||.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~i~~-~~~~~~~~~~vi~TGG~ 224 (256)
T PRK13321 185 TVSSIQSGLYYGYAGLVEGIVAR-IKAELGGPPRVIATGGF 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCc
Confidence 78888889999999999888884 233355 3479999996
No 227
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=88.29 E-value=0.5 Score=37.05 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|+ ++|||+|....+.|.++. +. ..+.++-|+.+
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 46677 999999999998888765 21 12556555544
No 228
>KOG0191|consensus
Probab=87.77 E-value=1.7 Score=45.34 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
....++.|| +.||++|...+|.+.++...++. .++.+..+..+. ...+.+
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~----------------------------~~~~~~ 212 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV----------------------------HKSLAS 212 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccch----------------------------HHHHhh
Confidence 345678888 99999999999999999998874 556666665541 234556
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++. .+|+..++-++.. ........|+.+.+.+-++...
T Consensus 213 ~~~v~------~~Pt~~~f~~~~~----~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 213 RLEVR------GYPTLKLFPPGEE----DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhccc------CCceEEEecCCCc----ccccccccccHHHHHHHHHhhc
Confidence 66666 3677777755544 1112334556677766665444
No 229
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=87.73 E-value=1.3 Score=44.20 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=37.1
Q ss_pred EEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+||||+|.++++++++|.+|++ +.+.+.+++ ...+++.+.+.+.+.+..+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i-~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 52 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQI-RQRRQIPTP-------------ASQTPEALRQALSALVSPL 52 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcE-EEEEEecCC-------------CCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999999998 766655542 1234666777776666543
No 230
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=87.44 E-value=1.6 Score=44.63 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-c---CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-S---GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~---g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
...+.++..++.++-++++.++- +.. . .+++|+++||| ++.+.+.+.+++.++.|+.+...-.
T Consensus 243 ~~~~~l~~~~~~l~~EI~rsl~~--y~~~~~~~~i~~I~L~Ggg-a~l~gL~~~l~~~l~~~v~~~~p~~ 309 (340)
T PF11104_consen 243 YDQDALRPFLEELAREIRRSLDF--YQSQSGGESIERIYLSGGG-ARLPGLAEYLSEELGIPVEVINPFK 309 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--HHHH------SEEEEESGG-GGSTTHHHHHHHHHTSEEEE--GGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCCCEEEEECCc-cchhhHHHHHHHHHCCceEEcChHH
Confidence 45678889999999999999883 333 2 28999999999 9999999999999999999876433
No 231
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=86.40 E-value=0.84 Score=43.06 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=36.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|+.|++++...|+..+...+..|.+ | ........+++++-|..+|..+
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p------~~~~~~~~~~lFd~ia~~i~~f 120 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--P------EELMNGSGEELFDFIADCIAEF 120 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----------HHHHTSBHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--C------hHHhcCCcccHHHHHHHHHHHH
Confidence 6899999999999999998766313333333432 1 1122344577888777776554
No 232
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=86.17 E-value=1.5 Score=40.69 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=39.9
Q ss_pred EEEEEeCCceeEEEEEec--CCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchh
Q psy224 6 VLGIDIGTTSVKVCLIDA--NTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDH 73 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~--~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~ 73 (547)
++||||||+++|+++... +|+. +++....+.. .-....-.|++..-+++++++.......
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~--------gi~~G~I~d~~~~~~~I~~ai~~ae~~~ 63 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR--------GIRKGVIVDIEAAARAIREAVEEAERMA 63 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--------CccCcEEECHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999974 3443 2444433221 0112346789999999999988774443
No 233
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=86.09 E-value=2 Score=32.25 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
++.|. .+|||.|......|.+ .++.+..+..+.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 45566 9999999986554443 356665555544
No 234
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=2.7 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
++.++..+.+.|-.+-.+-..+. ..+...++++++||| .+|+++|+.+|..+.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~---~~~~~p~~l~vcGGG-~~N~llm~rLa~l~~ 315 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVA---TLQGDPRRLVVCGGG-RRNPLLMARLAALLE 315 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh---hccCCCceeEeecCC-ccCHHHHHHHHHhcC
Confidence 47899999999988877766554 223347899999999 999999999999995
No 235
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.37 E-value=2.8 Score=41.78 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcC---CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSG---INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g---~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
..+.++-+++.+.-++++.++- .+...+ ++.|+++||| ++-..+-+.+.+.++.|+.+..--+.|+.
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqf-y~~~s~~~~id~i~LaGgg-A~l~gL~~~i~qrl~~~t~vanPf~~~~~ 326 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQF-YLSQSEMVDIDQILLAGGG-ASLEGLAAAIQQRLSIPTEVANPFAYMAL 326 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeEEEEecCC-cchhhHHHHHHHHhCCCeEeeCHHHHHhh
Confidence 4578899999999999998873 233333 7899999999 99999999999999999998776666653
No 236
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=85.30 E-value=2.8 Score=39.12 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
.+++.|+.|. -..||+|....+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4788899999 9999999999998876
No 237
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=85.07 E-value=1 Score=43.74 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=27.6
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccc
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSES 33 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~ 33 (547)
|+.++++.||=||||.|+-|++.+|.+ +.+.+
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~-l~~r~ 33 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAV-LAERR 33 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcce-eeeec
Confidence 566889999999999999999999988 65443
No 238
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=84.83 E-value=1.2 Score=39.13 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC 424 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i 424 (547)
.++++|+.|+ -.+||+|....+.+.++..++.+ ++++..
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 3678889999 99999999999999998877653 444443
No 239
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=84.71 E-value=2.9 Score=42.58 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEec
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQ 346 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~ 346 (547)
+.++.+++.|.++-.+.+.++. .+++.++++|+++||. +.|+.+++.+.+.. +..+..++
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~-a~~~~~~~~lvv~GGV-AaN~~LR~~l~~~~~~~~~~~~~p~ 298 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTER-AMSHCGSNEVLIVGGV-GCNLRLQEMMQQMAKERGGKLFAMD 298 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEcCCH-HHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 5689999999999888887776 5776778999999996 99999999998876 56666543
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.70 E-value=6.1 Score=43.46 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++..|-.|. +.+||+|+.....++++..+.. ++..-.|.. ...+++++.
T Consensus 476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~----------------------------~~~~~~~~~ 524 (555)
T TIGR03143 476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV----------------------------SHFPDLKDE 524 (555)
T ss_pred CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC----------------------------cccHHHHHh
Confidence 344455566 9999999987777777765532 222222211 112678889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
|++. +.|+++| ||++.+. |.. ..+++++.|
T Consensus 525 ~~v~------~vP~~~i---~~~~~~~--G~~----~~~~~~~~~ 554 (555)
T TIGR03143 525 YGIM------SVPAIVV---DDQQVYF--GKK----TIEEMLELI 554 (555)
T ss_pred CCce------ecCEEEE---CCEEEEe--eCC----CHHHHHHhh
Confidence 9998 5898774 4555533 333 467777765
No 241
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=84.39 E-value=2 Score=39.37 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.3
Q ss_pred EEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
||||+|+|.+-++++|.++++ ++..+.++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~-~~~~K~~T 30 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGV-VATAKVPT 30 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCE-EEEEEeCC
Confidence 799999999999999999666 77777666
No 242
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=84.11 E-value=2.1 Score=33.92 Aligned_cols=38 Identities=13% Similarity=-0.056 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .+|||.|......|+++..++ .++.+.-+..+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 56677 999999999999999988765 366666665553
No 243
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=83.90 E-value=2.8 Score=40.92 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.7
Q ss_pred eEEEEEeCCceeEEEEEecCCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+++|||+|+|++|++|+|.+++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~ 23 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGD 23 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCC
Confidence 6899999999999999997654
No 244
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=83.17 E-value=3.8 Score=41.28 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY 338 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l 338 (547)
++.++.+++.+.++-.+-+..+. .+++.++++|+++||. +.|+.+++.+.+.+
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~-~~~~~g~~~vvlsGGV-a~N~~L~~~l~~~~ 282 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKR-ALKDTGPKELVLVGGV-SANKRLREMLETLC 282 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECCH-HHHHHHHHHHHHHH
Confidence 47889999999998888887775 4556789999999996 99999999988877
No 245
>PRK14878 UGMP family protein; Provisional
Probab=82.95 E-value=3.6 Score=41.81 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
++.++.+++.+.++-.+-..... ..++.++++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 213 ~~~diAa~fq~~l~~~l~~~~~~-~~~~~g~~~vvlsGGV-a~N~~L~~~l~~~~~~~g~~v~~~~~ 277 (323)
T PRK14878 213 RLEDVCYSLRETAFAMLVEVTER-ALAHTGKKEVLLVGGV-AANRRLREKLEIMAEDRGAKFYVVPP 277 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 56899999999988888887775 3455778999999996 99999999999877 666766553
No 246
>PRK13410 molecular chaperone DnaK; Provisional
Probab=82.83 E-value=4.7 Score=45.27 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
-+++...+++.+.-.+++.++...+....+..|+++||+ +|.|.+.+++.+.++.++.....
T Consensus 300 FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGs-sRiP~V~~~l~~~fg~~~~~~~n 361 (668)
T PRK13410 300 FESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGS-TRMPMVQQLVRTLIPREPNQNVN 361 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc-cccHHHHHHHHHHcCCCcccCCC
Confidence 345555666655555555443100111126799999998 99999999999999987655433
No 247
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=81.53 E-value=1.8 Score=39.93 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++-++|-+|-..+.+++ ..+++.++++||. +.-+.+..++...|+.+|..+..+-.|.
T Consensus 207 v~PV~eKMAeIv~~hie-----~~~i~dl~lvGGa-c~~~g~e~~Fe~~l~l~v~~P~~p~y~T 264 (277)
T COG4820 207 VKPVYEKMAEIVARHIE-----GQGITDLWLVGGA-CMQPGVEELFEKQLALQVHLPQHPLYMT 264 (277)
T ss_pred hhHHHHHHHHHHHHHhc-----cCCCcceEEeccc-ccCccHHHHHHHHhccccccCCCcceec
Confidence 45688888877777665 6678999999997 9999999999999999999988877654
No 248
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=81.31 E-value=0.99 Score=50.50 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=25.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
.+||||||+|++|.+++|.+|++ +...+.++
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i-~~~~~~~t 49 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEI-TQIRVYPG 49 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcc-cceeEEec
Confidence 37999999999999999999987 66554443
No 249
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=81.21 E-value=3.7 Score=41.49 Aligned_cols=62 Identities=15% Similarity=0.365 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
++.++.+++.+.++-.+.+.++. .+++.++++|+++||. +.|..+++.+.+.+ +..+.+.+.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~-~~~~~~~~~v~lsGGV-a~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKR-ALKKTGLKTLVVAGGV-AANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 47799999999999988888875 4556788999999996 99999999999887 666665443
No 250
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=81.08 E-value=2.2 Score=41.36 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=34.6
Q ss_pred EEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 8 GIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
||||||+++|+++.+.+++. ++....+-.. -.+..-.|.+.....++..+.
T Consensus 1 g~dig~~~ik~v~~~~~~~~-~~~~~~~~~~--------~~~g~I~d~~~~~~~l~~l~~ 51 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQP-VAGVMQFADV--------VRDGIVVDFLGAVEIVRRLKD 51 (239)
T ss_pred CCCcccceEEEEEEecCCCE-EEEEeccccc--------ccCCeEEEhHHHHHHHHHHHH
Confidence 79999999999999988765 5555444321 223456777777666665553
No 251
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=80.59 E-value=4.2 Score=41.27 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 315 NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 315 ~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+-|+++||| |+-+.+.+.+++.++.||.+.+.+....
T Consensus 275 ~GI~LtGGg-a~l~Gl~~~i~~~~~~pV~va~~P~~~v 311 (326)
T PF06723_consen 275 NGIVLTGGG-ALLRGLDEYISEETGVPVRVADDPLTAV 311 (326)
T ss_dssp H-EEEESGG-GGSBTHHHHHHHHHSS-EEE-SSTTTHH
T ss_pred CCEEEEChh-hhhccHHHHHHHHHCCCEEEcCCHHHHH
Confidence 469999998 9999999999999999999999887543
No 252
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=80.40 E-value=3 Score=42.11 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.9
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccccc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKD 35 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~ 35 (547)
||||+|.|++|++++|.+|++ +.+...+
T Consensus 1 lgidig~t~~~~~l~d~~g~i-~~~~~~~ 28 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNI-LSKWKVP 28 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCE-EEEEEeC
Confidence 689999999999999999998 7655443
No 253
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=80.40 E-value=11 Score=34.38 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred hhhhhccCCCCCCeeeccccCCceeeEeccCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-------HHhhC---
Q psy224 351 RDASYALEKPAPEFEGQAVVNGQFKNIKLSQY---KGQYVVLFFYPLDFTFVCPTEIIAFSDRAE-------EFKKI--- 417 (547)
Q Consensus 351 ~~a~~~~g~~~p~~~l~~~~~G~~~~~~l~~~---~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~-------~~~~~--- 417 (547)
.+....+|..+|+..+....+| +++.+.+. -|++.|+.|-...-.+.+...+..+.+..+ .|..+
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~--~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~ 103 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADG--NPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRD 103 (169)
T ss_dssp GBTTS-TTCB----EEEETTTT--EEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-
T ss_pred cccCcCCccccCCceEEEEcCC--CChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCC
Confidence 3334459999999999887888 69999764 589999999865556655545555555442 44332
Q ss_pred ---CcEEEEEeCCCh--hhHHHHhhccccCCCCCCcc-eeeecCC------ChHHHHHhCCcc
Q psy224 418 ---NTQVIACSTDSH--FSHLAWCNIPRNKGGLGDMA-IPILSDK------SMSIARSYGVLN 468 (547)
Q Consensus 418 ---~~~vi~is~d~~--~~~~~~~~~~~~~~~~~~~~-fp~l~D~------~~~~~~~~~v~~ 468 (547)
-++++.|...+. .++..+.+-++.+-.+.++. +.++.|. .+.+.+.|||..
T Consensus 104 ~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 104 PDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 288888887643 23334443333222222333 3455553 378888888753
No 254
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=79.95 E-value=4.3 Score=41.21 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
+..++.+++.+.++-.+....+. ..+..|.++|+++||. +.|..+++.+.+.+ +.++...+.
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~-~~~~~g~~~lvlsGGV-a~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTER-ALAHTGKKEVLLVGGV-AANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 57899999999988888887775 3455788999999996 99999999999854 555655443
No 255
>PRK09604 UGMP family protein; Validated
Probab=79.43 E-value=5.2 Score=40.78 Aligned_cols=62 Identities=11% Similarity=0.282 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
++.++.+++.+.++-.+.+.++. .+++.++++|+++||. +.|..+++.+.+.+ +..+.+.+.
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~-~~~~~~~~~lvlsGGV-a~N~~L~~~l~~~~~~~g~~v~~~~~ 290 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKR-ALKQTGVKTLVVAGGV-AANSGLRERLAELAKKRGIEVFIPPL 290 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEcChH-HHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 57899999999999888888775 4556788999999996 99999999999988 666666543
No 256
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=79.21 E-value=36 Score=30.84 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCCCCCeeeccccCCceeeEeccCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC----------------C
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQY---KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI----------------N 418 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~---~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~----------------~ 418 (547)
|..+|++.+....++ +++.|.+. -|++.|+.|- ..--+ ..+...+.++.+.+... =
T Consensus 1 G~R~~~a~V~r~aD~--~p~~L~~~~~adGrfrI~vFa-gd~~~--~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQADA--LPVHLGHRLPADGRFRIYVFA-GDIAP--AQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEecCC--CCHhHhhhccCCCCEEEEEEc-CCCCc--hhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 556788888876677 57777654 5899998888 43222 34455566666555321 1
Q ss_pred cEEEEEeCCChhhH--HHHhhccccCCCCCCccee-eecCCC------hHHHHHhCCcccCCCcceeEEEEEcCCCcEEE
Q psy224 419 TQVIACSTDSHFSH--LAWCNIPRNKGGLGDMAIP-ILSDKS------MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQ 489 (547)
Q Consensus 419 ~~vi~is~d~~~~~--~~~~~~~~~~~~~~~~~fp-~l~D~~------~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~ 489 (547)
+.++.|......+. ....+..+..-...+.++. ++.|.+ +...+.||+..+ ....+|+=|||-|-.
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~-----~g~vvvvRPDgyVg~ 150 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE-----RGAVVVVRPDQYVAL 150 (167)
T ss_pred EEEEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC-----CCCEEEECCCCeEEE
Confidence 67777766543222 1122211111011133432 445533 568889998642 356889999998876
Q ss_pred EE
Q psy224 490 IT 491 (547)
Q Consensus 490 ~~ 491 (547)
..
T Consensus 151 ~~ 152 (167)
T cd02979 151 VG 152 (167)
T ss_pred Ee
Confidence 55
No 257
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=78.74 E-value=3.5 Score=42.78 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHH-HhhhhhhhhhcC----CcE-EEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 285 VTKLFVALCEGIINNIH-DIMNRSVLHRSG----INR-IIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~-~~~~~~~l~~~g----~~~-I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
..+++++.++-+.-.++ ..++ +.+ +.. |+++||+ ++.+.+.+++.+.++.|+.+..
T Consensus 285 l~~ii~~~~~ei~~~i~~~~L~-----~~~~~~~i~~gIvLtGG~-S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 285 LAEIIEARAEEILEIVKQKELR-----KSGFKEELNGGIVLTGGG-AQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hcCCcccCCCEEEEeChH-HcccCHHHHHHHHhCCCeEEEC
Confidence 44566666666666665 4443 322 444 9999998 9999999999999999988875
No 258
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=78.71 E-value=9.2 Score=42.89 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEe
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVE 345 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~ 345 (547)
-+++.+.+++.+.-.+++.++...+....+..|+++||+ +|-|.+.+++.+.++.+....
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGs-sriP~V~~~l~~~fg~~~~~~ 384 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGM-TRMPKVVEEVKKFFQKDPFRG 384 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCc-ccChHHHHHHHHHhCCCcccc
Confidence 456667777777666666554211111227899999997 999999999999999855443
No 259
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=78.53 E-value=4.8 Score=31.31 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
+..|..|. .+|||.|......|. +.|+.+..+..+.
T Consensus 7 ~~~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~ 42 (79)
T TIGR02190 7 PESVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGN 42 (79)
T ss_pred CCCEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCC
Confidence 33466677 999999998877664 3466665565553
No 260
>CHL00094 dnaK heat shock protein 70
Probab=78.42 E-value=9.8 Score=42.46 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=29.1
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
+..|+++||+ +|.|.+.+++++.++.++.....+
T Consensus 329 i~~ViLvGGs-sriP~v~~~l~~~fg~~~~~~~~p 362 (621)
T CHL00094 329 IDEVVLVGGS-TRIPAIQELVKKLLGKKPNQSVNP 362 (621)
T ss_pred CcEEEEECCc-cCChHHHHHHHHHhCCCcCcCCCc
Confidence 6899999997 999999999999999876554433
No 261
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=78.38 E-value=5.7 Score=40.54 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hc--C-Cc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLH-RS--G-IN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~-~~--g-~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
..+++...++.+.-.++..++. .. +. . ++ .|+++||+ ++-+.+.+++.+.++.|+.+...+..
T Consensus 244 ~~eii~~~~~~i~~~i~~~l~~--~~~~~~~~~i~~~IvL~GG~-s~ipgi~e~l~~~~~~~v~~~~~P~~ 311 (336)
T PRK13928 244 IREALKEPVSAIVQAVKSVLER--TPPELSADIIDRGIIMTGGG-ALLHGLDKLLAEETKVPVYIAEDPIS 311 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCccccHhhcCCCEEEECcc-cchhhHHHHHHHHHCCCceecCCHHH
Confidence 3456666677777777766653 21 11 1 44 79999998 99999999999999999998876654
No 262
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=78.05 E-value=2.7 Score=42.30 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=36.0
Q ss_pred EEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
||+|||+-++|++++|.+|++ ....+.++|. -++++.+-+++...+.++.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~-~~v~~~~~pl-------------W~~~~~L~~~l~~~~~~~~ 50 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRI-KEVHQLYCPL-------------WKGNDKLAETLKEISQDLS 50 (318)
T ss_pred CccccccceeeeEEecCCCce-eEEEEecCcc-------------cCCchHHHHHHHHHHHhcC
Confidence 699999999999999999987 6666666654 2344555556666666553
No 263
>KOG4277|consensus
Probab=78.04 E-value=4.9 Score=39.27 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=41.2
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeee-cCC--ChHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPIL-SDK--SMSIAR 462 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l-~D~--~~~~~~ 462 (547)
.-+|.|| +.||.+|+..-|.-.+.--++++.| +|..+- .|. -..+++
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig-----------------------------~PikVGKlDaT~f~aiAn 94 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIG-----------------------------LPIKVGKLDATRFPAIAN 94 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcC-----------------------------CceeecccccccchhhHh
Confidence 4478899 9999999987775554443333322 222221 122 268889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcE
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
.||+. .+|+..++. +|.+
T Consensus 95 efgiq------GYPTIk~~k-gd~a 112 (468)
T KOG4277|consen 95 EFGIQ------GYPTIKFFK-GDHA 112 (468)
T ss_pred hhccC------CCceEEEec-CCee
Confidence 99998 589988883 4433
No 264
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=77.94 E-value=6.2 Score=40.40 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh-hc---CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLH-RS---GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~-~~---g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
.+.++..++-++-+++..++. +. +. .+.+|+++||| ++.+.+...++..++.|+.....
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~--~~~~~~~~~i~~I~LtGgg-a~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQF--FTAQSGTNSLDGLVLAGGG-ATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCCCCCcccceEEEECcc-ccchhHHHHHHHHHCCCeEecCh
Confidence 457888889999888888862 32 22 27899999998 99999999999999999998753
No 265
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=77.43 E-value=6.1 Score=31.22 Aligned_cols=36 Identities=8% Similarity=-0.089 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 389 LFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 389 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
..|+ ...||.|....+.+.++...+ ..++++.-...
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~~ 37 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRPF 37 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEecc
Confidence 4566 999999999999999887333 34566666554
No 266
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=77.02 E-value=6.1 Score=40.32 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-hc--C-Cc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 288 LFVALCEGIINNIHDIMNRSVLH-RS--G-IN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~-~~--g-~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
++...++.+.-.++..++. .. +. . ++ .|+++||+ ++-+.+.+.+++.++.|+.+..++..
T Consensus 250 ~i~~~l~~i~~~i~~~L~~--~~~~l~~~~~~~gIvLtGG~-s~lpgl~e~l~~~~~~~v~~~~~P~~ 314 (335)
T PRK13929 250 AMRESLLHILEAIRATLED--CPPELSGDIVDRGVILTGGG-ALLNGIKEWLSEEIVVPVHVAANPLE 314 (335)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCcccchhhcCCCEEEEchh-hhhhhHHHHHHHHHCCCceeCCCHHH
Confidence 3344555555555554442 11 11 1 45 59999998 99999999999999999998766653
No 267
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=76.22 E-value=3.9 Score=29.73 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH 429 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~ 429 (547)
|+.|. ..+||.|......| +++|+.+-.+..+..
T Consensus 1 V~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGS
T ss_pred cEEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccc
Confidence 45677 99999998776655 445777777776654
No 268
>PLN02914 hexokinase
Probab=76.13 E-value=5.4 Score=42.70 Aligned_cols=58 Identities=10% Similarity=0.242 Sum_probs=38.7
Q ss_pred eEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
.||+||+|+||.|+++++..|+. .+...+..+++ | ........+++|+-+..+|..+-
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p------~~l~~gt~~eLFdfIA~~i~~fl 155 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI--P------QELMFGTSEELFDFIASGLANFV 155 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC--C------hhhccCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999987631 13333344432 1 12234566788888888876654
No 269
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=76.06 E-value=13 Score=41.57 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
-++++..+++.+.-.+++.++...+....++.|+++||+ +|.|.+.+++.+.++.++.....+
T Consensus 298 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGs-sriP~v~~~l~~~fg~~~~~~~np 360 (627)
T PRK00290 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGS-TRMPAVQELVKEFFGKEPNKGVNP 360 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc-CCChHHHHHHHHHhCCCCCcCcCC
Confidence 345556666665555555444211111127899999997 999999999999999887654433
No 270
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=75.92 E-value=4.2 Score=41.62 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=37.8
Q ss_pred EEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchhhh
Q psy224 8 GIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDHLK 75 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~~~ 75 (547)
|||||+.++|++-+...++. +......+.|... -.+..-.|++.+-+++++++....-+...
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~------i~~g~i~d~~~l~~~L~~~~~~~~~~~k~ 64 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGA------ISDGEIVDPEALAEALKELLKENKIKGKK 64 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTS------EETTEES-HHHHHHHHHHHHHHHT----E
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCC------ccCCCcCCHHHHHHHHHHHHHHcCCCCCe
Confidence 89999999999999986543 2455666664211 01234578999999999998776554433
No 271
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=75.46 E-value=5.7 Score=29.39 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|. ..|||.|......|.+. ++.+.-+..+.
T Consensus 2 v~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~ 34 (72)
T cd02066 2 VVVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILE 34 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCC
Confidence 45566 99999999887766644 35555555544
No 272
>PLN02596 hexokinase-like
Probab=75.34 E-value=5.5 Score=42.68 Aligned_cols=58 Identities=3% Similarity=0.087 Sum_probs=37.1
Q ss_pred eEEEEEeCCceeEEEEEecCCC--eeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR--EELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~--~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
.||+||+|+||.|+++++..|+ .+....+..+++ | ........+++|+-|..+|..+-
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p------~~l~~~t~~eLFd~IA~~i~~fl 156 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--P------SNVLNGTSQELFDYIALELAKFV 156 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--C------hHhhcCCHHHHHHHHHHHHHHHH
Confidence 5799999999999999998775 212222333322 1 11223456778887777776543
No 273
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=75.27 E-value=16 Score=35.92 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++.++||+|| -..++.|...-..|..++.+|. .+.++-|...... +..
T Consensus 145 ~~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~-----------------------------~~~ 192 (265)
T PF02114_consen 145 KSTWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP-----------------------------ASE 192 (265)
T ss_dssp TT-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC-----------------------------TTT
T ss_pred CCcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC-----------------------------ccc
Confidence 3567899999 9999999999999999999987 3666655442200 112
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC---CCCCHHHHHHHHHhhHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP---VGRSVDETLRLVQAFQF 513 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~---~~~~~~~il~~l~~l~~ 513 (547)
.|... ..|+.+++ ++|.++..+++-.. ......++-..|.+...
T Consensus 193 ~f~~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 193 NFPDK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TS-TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred CCccc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 34433 37999999 59999999976432 23345555566665553
No 274
>KOG3425|consensus
Probab=74.59 E-value=6.7 Score=33.08 Aligned_cols=45 Identities=7% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCCeEEEEEEe-------CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 383 KGQYVVLFFYP-------LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 383 ~gk~~ll~f~~-------~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
+|+-+.+.|.- .+|||.|....|.+.+..+.. ..++.+|-+-+..
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGN 75 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-CCceEEEEEEecC
Confidence 45545555552 359999999999998777633 3466776665543
No 275
>PLN02920 pantothenate kinase 1
Probab=74.53 E-value=39 Score=34.98 Aligned_cols=69 Identities=22% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcH-HHHHHHHHHhC------CceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNH-ILQHYIERIYG------LQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~-~~~q~~Ad~l~------~~v~~~~~~~~~~a 353 (547)
.+++|++|+++--|+.++-++.-. .-+..++++|+.+|+ +.+++ ..++.++-+.. +.....+..+...|
T Consensus 268 ~s~eDia~SLL~mVs~nIgqiA~L-~A~~~~ik~Ivf~G~-fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGA 343 (398)
T PLN02920 268 YKPEDVARSLLRMISNNIGQISYL-NALRFGLKRIFFGGF-FIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGA 343 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEEee-cccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHH
Confidence 469999999999999999987641 223357999999999 68887 66665555442 33444555554443
No 276
>PRK11678 putative chaperone; Provisional
Probab=73.96 E-value=9.1 Score=40.80 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhC-CceEEecchhhhhhhh
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQDQAMRDASY 355 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~~~~~~~a~~ 355 (547)
+++++..++-+.-.+++. +++.+ ++.|+++||. ++.+.+.+++.+.++ .++......+..+.+.
T Consensus 375 e~ii~~~l~ri~~~i~~~-----L~~a~~~~d~VvLvGGs-SriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gl 441 (450)
T PRK11678 375 EEAISQPLARILELVQLA-----LDQAQVKPDVIYLTGGS-ARSPLIRAALAQQLPGIPIVGGDDFGSVTAGL 441 (450)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHcCCCCCEEEEcCcc-cchHHHHHHHHHHCCCCcEEeCCCcchHHHHH
Confidence 344444444444444443 44544 6799999997 999999999999996 5676665555555444
No 277
>PHA03050 glutaredoxin; Provisional
Probab=73.53 E-value=5.6 Score=33.23 Aligned_cols=22 Identities=14% Similarity=0.085 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|+.|. .+|||+|.....-|+++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 66777 99999998776655544
No 278
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=73.44 E-value=17 Score=40.39 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch-hhhhhhhc-----cCC
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ-AMRDASYA-----LEK 359 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~-~~~~a~~~-----~g~ 359 (547)
++++.-+++.+.-.+++.++...+....++.|+++||+ +|.|.+.+++.+.++.++.....+ +..+.+++ +-.
T Consensus 297 e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGs-sriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 297 EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGS-TRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCc-ccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcC
Confidence 45555555555544444443100111126899999997 999999999999999776654433 33332222 112
Q ss_pred CCCCeeeccccCCceeeEeccCCCCC
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQ 385 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk 385 (547)
..+++.+.| ..- .++.+....|.
T Consensus 376 ~~~~~~~~d-~~~--~~igi~~~~~~ 398 (595)
T TIGR02350 376 DVKDVLLLD-VTP--LSLGIETLGGV 398 (595)
T ss_pred Ccccceeee-ccc--ceeEEEecCCc
Confidence 245666665 333 24554444444
No 279
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=73.21 E-value=12 Score=38.36 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=40.9
Q ss_pred CceEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
+..++|||||++++|++.+...++. +......+.+... ...| .-.|++.+-+++.+++....
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~-----i~~g-~i~d~~~~~~~l~~~~~~~~ 65 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGI-----FTEG-HIVEYQAVAEALKELLSELG 65 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCc-----ccCC-CccCHHHHHHHHHHHHHHcC
Confidence 3568999999999999999854432 2444444443211 1222 35688888888888887653
No 280
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=72.89 E-value=6.2 Score=35.76 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=33.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
.++++|+.|+ -..||+|....+.+.++.+++. .++.+.-+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceEEEcC
Confidence 5788999999 9999999999999999988873 355554443
No 281
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.89 E-value=7.3 Score=34.61 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=36.5
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACST 426 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~ 426 (547)
.+-+-..+++|+.|+ .-.||+|....+.+.++.+++- +..+.++....
T Consensus 6 ~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 6 TIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred eecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 344445688889999 9999999999999999999982 33577777765
No 282
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=72.07 E-value=7.1 Score=32.02 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFS 408 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~ 408 (547)
|+.|- .+|||+|.....-|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLL 29 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHH
Confidence 56677 899999997665444
No 283
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=71.96 E-value=25 Score=38.20 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEE 413 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~ 413 (547)
.+.+..-+..|. ...||+|+.....++++..+
T Consensus 113 ~~~~~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 113 ALDGDFHFETYV-SLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred hcCCCeEEEEEE-cCCCCCcHHHHHHHHHHHHh
Confidence 334455577777 99999999888877777654
No 284
>PRK13320 pantothenate kinase; Reviewed
Probab=71.11 E-value=4.4 Score=39.31 Aligned_cols=53 Identities=8% Similarity=0.049 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
|.+.+...++-|.+..+...++. ..++.+.-.|+++||. .++++..+..++.+
T Consensus 175 T~~ai~sG~~~~~~~~i~~~i~~-~~~~~~~~~vi~TGG~-------a~~l~~~l~~~~~~ 227 (244)
T PRK13320 175 TEECIRSGVVWGCVAEIEGLIEA-YKSKLPELLVILTGGD-------APFLASRLKNTIFA 227 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECCC-------HHHHHHhcCCccEE
Confidence 78888888888888888888774 2334553479999996 44566666665544
No 285
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=70.81 E-value=7.3 Score=30.12 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAE 412 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~ 412 (547)
|+.|. ..|||.|......|.++..
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV 25 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC
Confidence 45566 9999999998887776654
No 286
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=70.54 E-value=7.7 Score=30.78 Aligned_cols=37 Identities=14% Similarity=-0.067 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|- .+|||+|......|.++..++. ++.+.-+..+
T Consensus 2 V~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34555 9999999998887777654332 3444444443
No 287
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=70.26 E-value=10 Score=39.31 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=37.0
Q ss_pred ceEEEEEeCCceeEEEEEecCC--CeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT--REELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g--~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.-+|+||+|+|+.|.+++...| .. .-+. -++. .|... .....++++|.-+.+.+.|+
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~-~~~~-sks~--lp~e~-----~~~~~~~~l~~~iadrl~~f 133 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTF-DIEQ-SKSF--LPVEC-----RDSESRDELFGFIADRLAAF 133 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCc-cccc-Cccc--Cchhh-----ccCCChHHHHHHHHHHHHHH
Confidence 4689999999999999998654 33 1111 1111 22111 11237899999999888884
No 288
>PLN02405 hexokinase
Probab=70.22 E-value=9.1 Score=41.12 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=38.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
.||+||+|+||.|++++...|+- .+...+..+++ | +.......+++|+-|..+|..+-
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p------~~~~~gt~~~LFdfIA~~i~~fl 155 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--P------PHLMTGSSDALFDFIAAALAKFV 155 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--C------hhhccCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999987631 13333334432 1 12234567788888877776643
No 289
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=69.96 E-value=12 Score=28.36 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .++||.|......|++ +|+.+-.+..+.
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 45566 8999999987666654 356555555543
No 290
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=69.83 E-value=9.7 Score=39.45 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=38.3
Q ss_pred eEEEEEeCCceeEEEEEec--CCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDA--NTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~--~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.++||||||+++|+++... +++. +++....+..- -. ...-.|++..-+++++++...
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~g-------i~-~G~I~d~~~~~~~i~~al~~~ 60 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRG-------IK-KGVINDIEAAVGSIQRAIEAA 60 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC-------cc-CcEEEcHHHHHHHHHHHHHHH
Confidence 3689999999999999874 3433 24444433210 12 234678899999999998774
No 291
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=69.67 E-value=10 Score=28.81 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=20.8
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
.|. .++||.|......|++ +|+.+-.+..+.
T Consensus 3 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~ 33 (72)
T TIGR02194 3 VYS-KNNCVQCKMTKKALEE-------HGIAFEEINIDE 33 (72)
T ss_pred EEe-CCCCHHHHHHHHHHHH-------CCCceEEEECCC
Confidence 444 8999999988776653 466655555543
No 292
>PLN02362 hexokinase
Probab=69.11 E-value=9.2 Score=41.24 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=37.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
.||+||+|+|+.|+++++..|+. .+...+..+++ | ........+++|+-|..+|..+-
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p------~~l~~~~~~eLFd~IA~~i~~fl 155 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--P------QHLMNSTSEVLFDFIASSLKQFV 155 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--C------hhhccCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999987742 12222223322 1 11224467788887777776543
No 293
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=68.74 E-value=12 Score=38.15 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh-hc--C-Cc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLH-RS--G-IN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~-~~--g-~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
.+++...++.+.-.+++.++. .. +. . ++ .|+++||+ ++-+.+.+.+.+.++.++.+...+..
T Consensus 246 ~e~i~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~~IvL~GG~-s~ipgl~~~l~~~~~~~v~~~~~P~~ 312 (334)
T PRK13927 246 REALQEPLSAIVEAVKVALEQ--TPPELAADIVDRGIVLTGGG-ALLRGLDKLLSEETGLPVHVAEDPLT 312 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCchhhhhhhcCCEEEECch-hhhhHHHHHHHHHHCCCcEecCCHHH
Confidence 456666667777766666653 21 11 1 33 59999997 99999999999999999988766543
No 294
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=67.87 E-value=13 Score=29.15 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CChhhHHHHhh
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DSHFSHLAWCN 437 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~~~~~~~~~~ 437 (547)
+..|- .++||+|...-..|. ++|+.+.-+.. +...+.+++.+
T Consensus 3 v~iyt-~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYT-KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVK 46 (80)
T ss_pred EEEEE-CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHH
Confidence 34444 778999998766655 44554444433 33334444444
No 295
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=67.75 E-value=3.9 Score=41.36 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEeCCceeEEEEEecCCCeeecc
Q psy224 7 LGIDIGTTSVKVCLIDANTREELSS 31 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~~l~~ 31 (547)
|.+|||+|++|.+++|.++++ +..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~-l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGE-ISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCc-eee
Confidence 579999999999999998876 433
No 296
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.70 E-value=5 Score=38.35 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+.++|||-|||.+|.+++|.++.+
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~ 26 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDP 26 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCc
Confidence 347999999999999999977765
No 297
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=67.69 E-value=9.8 Score=42.96 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC---CceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG---LQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~---~~v~~~ 345 (547)
+++++.+++.++++-.+...++. ..++.++++|+++||. ++|+.+++.+.+.+. ..+...
T Consensus 630 ~~~~IAa~fh~tla~~L~~~a~~-~~~~~g~~~VvLSGGV-fqN~~L~~~L~~~L~~~g~~v~~p 692 (711)
T TIGR00143 630 DRSKIAHIAHKFVASGLVEIATA-IAVPFGIHKIVISGGV-FYNRLLLERLAKYLKGLGFQFLFH 692 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEeccH-HHHHHHHHHHHHHHHhCCCEEEcc
Confidence 57788888888888878777764 3445678899999996 999999999988775 445443
No 298
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=67.07 E-value=23 Score=39.84 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
++++.-+++.+.-.+++.++...+....++.|+++||. ++.|.+.+++.+.++.++.....+
T Consensus 340 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~v~~~l~~~f~~~~~~~~np 401 (663)
T PTZ00400 340 EELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGM-TRMPKVSETVKKIFGKEPSKGVNP 401 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCc-cCChHHHHHHHHHhCCCcccCCCC
Confidence 44555555555444444443100111126899999997 999999999999999876554333
No 299
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=67.05 E-value=14 Score=40.30 Aligned_cols=61 Identities=16% Similarity=0.371 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~ 346 (547)
+..++.+++.+.++-.+...+.. .+++.|+++|+++||. +.|..+++.+.+.+ +.++.+++
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~-~~~~~g~~~lvlsGGV-a~N~~l~~~l~~~~~~~~~~v~~~~ 280 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTER-ALAHTGKDEVLLVGGV-AANNRLREMLKEMCEERGADFYVPE 280 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeccH-HHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46789999999998888888775 4556788999999996 99999999999665 56666654
No 300
>PLN03184 chloroplast Hsp70; Provisional
Probab=67.01 E-value=24 Score=39.79 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch-hhhhhhhc-----cCC
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ-AMRDASYA-----LEK 359 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~-~~~~a~~~-----~g~ 359 (547)
+++..-+++-+.-.++..++...+....+..|+++||. +|.|.+.+++.+.++.++...-.+ +..+.+++ +..
T Consensus 338 e~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGs-sriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~ 416 (673)
T PLN03184 338 EELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGS-TRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAG 416 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCc-cccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhcc
Confidence 34444445444444444433100111126899999997 999999999999999876554333 33333332 122
Q ss_pred CCCCeeecc
Q psy224 360 PAPEFEGQA 368 (547)
Q Consensus 360 ~~p~~~l~~ 368 (547)
...++.+.|
T Consensus 417 ~~~~~~~~d 425 (673)
T PLN03184 417 EVSDIVLLD 425 (673)
T ss_pred CccceEEEe
Confidence 344555555
No 301
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=66.84 E-value=13 Score=41.51 Aligned_cols=62 Identities=11% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
-+++...+++.+.-.++..++...+....+..|+++||+ +|.|.+.+++.+.++.++.....
T Consensus 300 fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~v~~~l~~~fg~~~~~~~n 361 (616)
T PRK05183 300 FNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGS-TRVPLVREAVGEFFGRTPLTSID 361 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCc-ccChHHHHHHHHHhccCcCcCCC
Confidence 445666666666555555544211111126899999997 99999999999999987654433
No 302
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=66.69 E-value=14 Score=27.85 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|- .++||.|......|++ .|+.+.-+..+
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 45566 8999999988665553 35555555544
No 303
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=66.15 E-value=13 Score=37.68 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh-hc--C-CcE-EEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLH-RS--G-INR-IIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~-~~--g-~~~-I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
.+++...++.+.-.++..++. .. +. . +++ |+++||+ ++-+.+.+.+++.++.|+.....+.
T Consensus 250 ~e~i~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~~IvL~GG~-s~ipg~~~~l~~~~~~~v~~~~~p~ 315 (335)
T PRK13930 250 REALAEPLQQIVEAVKSVLEK--TPPELAADIIDRGIVLTGGG-ALLRGLDKLLSEETGLPVHIAEDPL 315 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCHHHhhHHHhCCEEEECch-hcchhHHHHHHHHHCCCceecCCHH
Confidence 455555666666666666552 21 11 1 344 9999998 9999999999999999998876554
No 304
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=66.06 E-value=5.3 Score=44.61 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=18.8
Q ss_pred eEEEEEeCCceeEEEEEecCCCe
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.++|||+|||+.++++++ +|+.
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~~ 24 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME-GGEP 24 (627)
T ss_pred cEEEEEeCcccEEEEEEE-CCEE
Confidence 689999999999999998 4543
No 305
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.85 E-value=34 Score=34.38 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=47.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCe--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchhhhhhcee
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDHLKQVKHI 80 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~~~~~~~i 80 (547)
..+|||||++|||++-+...|+. +......+.|... -.+..-.|++.+-+.+.+++...-.++...+.++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~i------v~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AV 82 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENI------VADGKIVDYDAVASALKRALAKLGIKSKNAATAV 82 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccc------cccCCcccHHHHHHHHHHHHHhcCcchhhhhhhc
Confidence 58999999999999999977765 1233333332211 1234568899999999999988766655444333
No 306
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=64.70 E-value=14 Score=40.93 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
-+++...+++.+.-.++..++...+....++.|+++||+ ++.|.+.+++.+.++..+.....
T Consensus 284 fe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGs-sriP~V~~~l~~~f~~~~~~~~n 345 (599)
T TIGR01991 284 FEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGS-TRMPLVRRAVAELFGQEPLTDID 345 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCc-CCChHHHHHHHHHhCCCCCCCCC
Confidence 345555555555555554443100111126899999997 99999999999999987654433
No 307
>PTZ00107 hexokinase; Provisional
Probab=64.56 E-value=11 Score=40.30 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=36.8
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcC-C-CCCC-ccccCHHHHHHHHHHHHhhCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAH-D-SNPG-AHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~-~-~~~g-~~e~d~~~~~~~~~~~i~~~d 70 (547)
.||+||+|+|+.|++++...|+......+..+.. |... . +.+. ..+...+++|+-+..+|..+-
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~i--p~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl 141 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSL--PKSALLGEKGLLDKKATATDLFDHIAKSIKKMM 141 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeC--CHHHhccccccccccCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999998775312222222221 1100 0 0000 112357788887777766543
No 308
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=63.92 E-value=18 Score=36.79 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hc--C-Cc-EEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLH-RS--G-IN-RIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~-~~--g-~~-~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
..+++...++++.-.++..++. .. +. . .+ .|+++||+ ++-+.+.+.+++.++.|+.....+..
T Consensus 248 ~~e~i~~~~~~i~~~i~~~l~~--~~~~~~~~l~~~~IvL~GGs-s~ipgl~e~l~~~~~~~v~~~~~P~~ 315 (333)
T TIGR00904 248 VREALQEPVNQIVEAVKRTLEK--TPPELAADIVERGIVLTGGG-ALLRNLDKLLSKETGLPVIVADDPLL 315 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCchhhhhhccCCEEEECcc-cchhhHHHHHHHHHCCCceecCChHH
Confidence 3455566666666666665552 21 11 1 23 69999998 99999999999999999998876643
No 309
>PRK10329 glutaredoxin-like protein; Provisional
Probab=63.64 E-value=26 Score=27.44 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|- .++||.|......| .++|+.+--+..+.
T Consensus 3 v~lYt-~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYT-RNDCVQCHATKRAM-------ESRGFDFEMINVDR 35 (81)
T ss_pred EEEEe-CCCCHhHHHHHHHH-------HHCCCceEEEECCC
Confidence 44555 89999998866555 33566666665553
No 310
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=63.53 E-value=6.8 Score=43.98 Aligned_cols=58 Identities=10% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC-CceEE
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG-LQLIV 344 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~ 344 (547)
+++.+-+++.+.-.++..++...+....++.|+++||+ +|.+.+.+++.+.++ .++..
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~v~~~i~~~f~~~~~~~ 363 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGS-TRIPKVQSLIKDFFNGKEPCK 363 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCC-CCChhHHHHHHHHhCCCCCCC
Confidence 45555555555555555444100111126899999997 999999999999996 45443
No 311
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=63.11 E-value=6.2 Score=39.90 Aligned_cols=45 Identities=33% Similarity=0.396 Sum_probs=36.6
Q ss_pred EEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH
Q psy224 8 GIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC 65 (547)
Q Consensus 8 gIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~ 65 (547)
|||-||+|...+.+|.+|++ +...++++. ....+|..+++.+.+.
T Consensus 1 GIDpGT~s~dv~~~dd~g~v-~~~~~ipt~------------~v~~~p~~iv~~l~~~ 45 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKV-IFYFSIPTE------------EVAKNPSIIVEELEEF 45 (343)
T ss_pred CCCCCCCcEEEEEEccCCcE-EEEeeccHH------------HhhhCHHHHHHHHHhc
Confidence 79999999999999998998 766666653 3678898888877665
No 312
>CHL00094 dnaK heat shock protein 70
Probab=63.00 E-value=6.5 Score=43.86 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=19.3
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.+++|||+|||+.++++++ +|++
T Consensus 2 ~~viGIDlGTt~s~va~~~-~g~~ 24 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME-GGKP 24 (621)
T ss_pred CceEEEEeCcccEEEEEEE-CCEE
Confidence 4799999999999999996 4554
No 313
>PRK13411 molecular chaperone DnaK; Provisional
Probab=62.01 E-value=32 Score=38.68 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcC-----CcEEEeeCCchhhcHHHHHHHHHHhC-CceEEecch-hhhhhhhc--
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSG-----INRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQDQ-AMRDASYA-- 356 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g-----~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~~~-~~~~a~~~-- 356 (547)
+++..-+++.+.-.+++. +++.+ ++.|+++||. +|.|.+.+++.+.++ .++.....+ +..+.+++
T Consensus 300 e~l~~~l~~~~~~~i~~~-----L~~a~~~~~~id~ViLvGGs-sriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~ 373 (653)
T PRK13411 300 EELTKDLVEATIEPMQQA-----LKDAGLKPEDIDRVILVGGS-TRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQ 373 (653)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHcCCCHHHCcEEEEECCC-CCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHH
Confidence 344555555544444443 33433 6799999997 999999999999996 455443222 33332332
Q ss_pred ---cCCCCCCeeecc
Q psy224 357 ---LEKPAPEFEGQA 368 (547)
Q Consensus 357 ---~g~~~p~~~l~~ 368 (547)
+.....++.+.|
T Consensus 374 aa~l~~~~~~~~~~d 388 (653)
T PRK13411 374 AGVLGGEVKDLLLLD 388 (653)
T ss_pred HHhhcCCccceeeee
Confidence 222345666655
No 314
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.71 E-value=55 Score=35.59 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=23.8
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEE 413 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~ 413 (547)
+.+.++.-+..|. ...||+|+.....++++..+
T Consensus 113 ~~~~~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 113 RRLNGPLHFETYV-SLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred HhcCCCeEEEEEE-eCCCCCCHHHHHHHHHHHHh
Confidence 3444556677777 99999999877777666654
No 315
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=61.40 E-value=16 Score=40.47 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
++..-+++.+.-.++..++...+....++.|.++||+ +|.+.+.+++.+.++.++.....+
T Consensus 302 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~-sr~p~v~~~l~~~f~~~~~~~~~p 362 (602)
T PF00012_consen 302 ELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGS-SRIPYVQEALKELFGKKISKSVNP 362 (602)
T ss_dssp HHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGG-GGSHHHHHHHHHHTTSEEB-SS-T
T ss_pred ccccccccccccccccccccccccccccceeEEecCc-ccchhhhhhhhhcccccccccccc
Confidence 4444555554444444443100111126899999997 999999999999999777665444
No 316
>PRK12440 acetate kinase; Reviewed
Probab=61.05 E-value=8.3 Score=39.94 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchhhcHH-HHHHHHHHhC
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLTRNHI-LQHYIERIYG 339 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~k~~~-~~q~~Ad~l~ 339 (547)
.+-+++..+|.++..+-.+ .... |++-|+.+||. ..|.. +++.+.+-++
T Consensus 296 A~lA~d~f~yri~k~Ig~~-~a~l~gvDaiVFTgGI-Gen~~~vr~~i~~~l~ 346 (397)
T PRK12440 296 ATLAFEVFTYRVAKYIASY-LAALDSLDGIIFTGGI-GENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECCcc-ccCcHHHHHHHHhhhh
Confidence 3457888999999888752 3333 59999999996 87776 7777776554
No 317
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=60.03 E-value=5.4 Score=38.37 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
++..-+++.+.-.++..++. ..+..|.++|+.+|=| .++.|..++.++..+....
T Consensus 253 d~A~~~~~~~l~~l~e~I~~-~a~r~gL~~Vv~~GlG----efLi~~A~~~lg~ec~~i~ 307 (330)
T COG1548 253 DLAEKAYNALLELLAENIEE-KAKRYGLNTVVATGLG----EFLIQEACKRLGYECISID 307 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHcChhhhhhccch----HHHHHHHHHhhCCeEEEhh
Confidence 44445555555556666653 2445678999999876 7899999999998877643
No 318
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=59.97 E-value=25 Score=26.59 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .++||.|......|.+ .|+.+-.+..+.
T Consensus 3 v~ly~-~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 3 VTIYS-RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred EEEEe-cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 44555 8999999887766654 466665555543
No 319
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=59.90 E-value=8.8 Score=40.45 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=24.6
Q ss_pred CceEEEEEeCCceeEEEEEec-CCCeeecccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA-NTREELSSES 33 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~ 33 (547)
|+|=+++|+|||.+++.++|. +|++ +++..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgev-v~t~~ 193 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEV-VATVI 193 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcE-EEeee
Confidence 568899999999999999996 5666 65553
No 320
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.87 E-value=85 Score=34.84 Aligned_cols=98 Identities=6% Similarity=-0.018 Sum_probs=55.2
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHH------HHHHHHHHHhhCCcEEEEEeCCCh--hhHHHHhhccccCCCCCCccee
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEII------AFSDRAEEFKKINTQVIACSTDSH--FSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~------~l~~~~~~~~~~~~~vi~is~d~~--~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+.-.+||++|... ++||.-|+.... ++.++.++ .+|.|-+|-. .++.+..
T Consensus 39 A~~edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREERPDvD~~Y--------------- 96 (667)
T COG1331 39 AKEEDKPILLSIG-YSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREERPDVDSLY--------------- 96 (667)
T ss_pred HHHhCCCEEEEec-cccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhhccCHHHHH---------------
Confidence 3346899999999 999999987643 34443332 3444444431 1111111
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC----CCHHHHHHHHHh
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG----RSVDETLRLVQA 510 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~----~~~~~il~~l~~ 510 (547)
.++.+...... .+|-++++-|||+..+.-.+-.... ..+.++|+.|..
T Consensus 97 ------m~~~q~~tG~G-----GWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~ 148 (667)
T COG1331 97 ------MNASQAITGQG-----GWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRE 148 (667)
T ss_pred ------HHHHHHhccCC-----CCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHH
Confidence 23333333332 4799999999999997763222211 135566555543
No 321
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=59.18 E-value=16 Score=28.05 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=15.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHH
Q psy224 389 LFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 389 l~f~~~~~cp~C~~~~~~l~~ 409 (547)
..|. .++||.|......|++
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSS 21 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHH
Confidence 4566 8999999988776654
No 322
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=58.62 E-value=11 Score=35.47 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEe
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACS 425 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is 425 (547)
.|++.|+.|| .-.||+|....+.+ ..+.+.+. .++.++-+.
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~-~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLP-EGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCC-CCCeEEEec
Confidence 5788899999 99999999987755 56666554 355555443
No 323
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=58.38 E-value=36 Score=38.27 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred CCCceEEEEEeCCceeEEEEEec
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDA 23 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~ 23 (547)
|+...++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 77777999999999999999875
No 324
>PRK13411 molecular chaperone DnaK; Provisional
Probab=58.30 E-value=8.4 Score=43.24 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
..++|||+|||+.++++++. |+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~-g~~ 24 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEG-GKP 24 (653)
T ss_pred CcEEEEEeCcccEEEEEEEC-CEE
Confidence 36899999999999999874 543
No 325
>PTZ00288 glucokinase 1; Provisional
Probab=57.97 E-value=23 Score=37.17 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=18.8
Q ss_pred ceEEEEEeCCceeEEEEEec
Q psy224 4 QVVLGIDIGTTSVKVCLIDA 23 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~ 23 (547)
+|++|+|||+|++|..+++.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 68999999999999999986
No 326
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.53 E-value=13 Score=41.59 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ 37 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~ 37 (547)
|++.+|||+|+|.+=++++|.++++ +...+..+.
T Consensus 1 ~~~~iGID~GGTfTDaV~~~~~~g~-~~~~K~lTt 34 (674)
T COG0145 1 MMLRIGIDVGGTFTDAVLLDEDGGV-LATIKVLTT 34 (674)
T ss_pred CceEEEEEcCCCcEeEEEEeCCCCE-EEEEEccCC
Confidence 4678999999999999999998766 677766653
No 327
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.42 E-value=10 Score=41.88 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 313 GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 313 g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
.+..|.++||. +|-|...+.+++.++.+....-++
T Consensus 309 ~I~~VilvGGs-triP~V~~~v~~~f~~~~~~~inp 343 (579)
T COG0443 309 DIDLVILVGGS-TRIPAVQELVKEFFGKEPEKSINP 343 (579)
T ss_pred hCceEEEccce-eccHHHHHHHHHHhCccccccCCc
Confidence 37899999997 999999999999999766665444
No 328
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=57.28 E-value=29 Score=38.46 Aligned_cols=61 Identities=18% Similarity=0.396 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
-+++.+-+++-+.-.++..++. -....++.|+++||. +|.|.+.+++.+.++.++.....+
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~--a~~~~Id~ViLvGGs-sriP~v~~~l~~~f~~~~~~~~np 342 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQ--AGNPNIDGVILVGGA-TRIPLIKDELYKAFKVDILSDIDP 342 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCcccCcEEEEECCc-ccChhHHHHHHHHhCCCceecCCc
Confidence 4456666666665555555442 111237899999997 999999999999999887664443
No 329
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=56.78 E-value=11 Score=39.35 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 290 VALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
+-++|..+|.++..+-.+ ... .| ++-|+.+||. . .+..+++.+.+-++
T Consensus 303 ~lA~~~f~yri~k~Iga~-~a~L~G~vDaiVFTGGI-GEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSY-IASLEGNLDAIVFTGGI-GENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEcCcc-ccCCHHHHHHHHhhhh
Confidence 448899999999988752 333 33 8999999996 8 78888888877555
No 330
>PRK13410 molecular chaperone DnaK; Provisional
Probab=56.65 E-value=9.4 Score=42.94 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=19.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.+++|||+|||+.++++++. |+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred CcEEEEEeCCCcEEEEEEEC-CeE
Confidence 46899999999999999874 553
No 331
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=56.11 E-value=31 Score=28.05 Aligned_cols=37 Identities=8% Similarity=-0.005 Sum_probs=21.3
Q ss_pred CCeEEEEEEe---CCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 384 GQYVVLFFYP---LDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 384 gk~~ll~f~~---~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.+.++|+--. .+|||+|......|++ .|+.+..+..+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 4455555441 1799999877655544 35555555543
No 332
>KOG0103|consensus
Probab=55.96 E-value=30 Score=38.12 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcC-----CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec-chhhhhhhhccCC
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSG-----INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ-DQAMRDASYALEK 359 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g-----~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~-~~~~~~a~~~~g~ 359 (547)
+++...+++-+-.-+...+. +.+ +..|=++||+ +|.+.+.++|++.++.+....- ..+..+.+++++=
T Consensus 306 Eel~~plL~rv~~p~~~~l~-----d~~l~~edi~~VEiVGg~-sripaike~Is~~Fgke~s~TlN~dEavarG~ALqc 379 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALA-----DAKLKVEDIHAVEIVGGL-SRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQC 379 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHH-----HhcCccccceeEEEecCc-ccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHH
Confidence 45556666666555555443 322 5688999998 9999999999999999998854 4455555444222
Q ss_pred -------CCCCeeeccccCCceeeEecc
Q psy224 360 -------PAPEFEGQAVVNGQFKNIKLS 380 (547)
Q Consensus 360 -------~~p~~~l~~~~~G~~~~~~l~ 380 (547)
..-+|++.| ..+ .+++++
T Consensus 380 AIlSP~frVRef~v~D-i~p--ysIs~~ 404 (727)
T KOG0103|consen 380 AILSPTFRVREFSVED-IVP--YSISLR 404 (727)
T ss_pred HhcCccccceecceec-ccc--eeEEEE
Confidence 234566766 555 466654
No 333
>PLN02902 pantothenate kinase
Probab=55.45 E-value=1e+02 Score=35.35 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
.++++++|+++--|++++-++.-. .-+..++++|+.+|.-+..++.-|+.++-++.
T Consensus 317 ~s~eDiarSLL~mIs~NIGqiA~L-~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~ 372 (876)
T PLN02902 317 YRPEDISLSLLRMISYNIGQISYL-NALRFGLKRIFFGGFFIRGHAYTMDTISFAVH 372 (876)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEecceecCCcchHHHHHHHHH
Confidence 469999999999999999998751 12235799999999964555667777775544
No 334
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=55.29 E-value=17 Score=31.78 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=22.7
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCe
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|+++.+||||+|+..+=.++-|..+..
T Consensus 1 ~~~~~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 1 MPSGRILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred CCCCcEEEEEeCCCEEEEEEecCCCCE
Confidence 344569999999999999999988765
No 335
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=54.76 E-value=11 Score=38.83 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc--CCcEEEeeCCchhhcHHHHHHHHHHhC--CceEEecchh
Q psy224 288 LFVALCEGIINNIHDIMNRSVLHRS--GINRIIGIGSCLTRNHILQHYIERIYG--LQLIVEQDQA 349 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~~~--g~~~I~~~GG~~~k~~~~~q~~Ad~l~--~~v~~~~~~~ 349 (547)
..+.+++-.++.+...+-. ...-. +++.|+++||. ++++.+++.+.+.+. .||.+.+...
T Consensus 267 ~A~~a~d~~~~~la~~Ia~-l~~~l~g~pD~IV~gGGI-~e~~~l~~~I~~~l~~~a~v~~~pg~~ 330 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGK-MAVVLKGKVDAIVLTGGL-AYSKYFVSEIIKRVSFIAPVLVYPGED 330 (351)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhCCCCCEEEEcchh-hcCHHHHHHHHHHHHhhCCEEEeCCcH
Confidence 4556777777777776654 23334 47889998885 888877776666554 6777765543
No 336
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=54.66 E-value=28 Score=36.53 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecc
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQD 347 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~ 347 (547)
..++++|=+|-+..-++.-++...+...-...|+++||+ ++-+....+..++|++++++..-
T Consensus 292 ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~-a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 292 LSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGG-AQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECch-hcCccHHHHHHHhcCCceEeCCC
Confidence 457777777777777766655322211115799999998 99999999999999999988654
No 337
>KOG0911|consensus
Probab=54.46 E-value=12 Score=35.31 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
+++..+++|| +.||.+|......+..+.+.+ ++++++-+..+.
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7889999999 999999998877777777777 567777666554
No 338
>PRK07058 acetate kinase; Provisional
Probab=54.37 E-value=12 Score=38.71 Aligned_cols=49 Identities=6% Similarity=-0.002 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
.+-++|..+|.++..+-.+ .... +++-|+.+||. . .+..+++.+.+-++
T Consensus 294 A~lA~d~f~yri~k~IGa~-~a~Lg~vDaiVfTGGI-gEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARL-AATLGGLDAVVFTAGI-GEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECCcc-ccCcHHHHHHHHhhhh
Confidence 4568899999999988752 3333 49999999995 8 77888888776554
No 339
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=54.25 E-value=14 Score=31.35 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=15.8
Q ss_pred EEEEEeCCceeEEEEEecC
Q psy224 6 VLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~ 24 (547)
+++||+|++.++++++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 5789999999999999863
No 340
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=53.25 E-value=1.5e+02 Score=25.56 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEE-EecCCCCCCCHHHHHHHHHhhHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQI-TINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~-~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.+.+.||+... ..|+.++++.++. ++. +.++. ..+.+.+.++.+-.
T Consensus 70 ~~~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~~~~----t~e~i~~Fv~~~l~ 116 (130)
T cd02983 70 DLEEALNIGGF----GYPAMVAINFRKM-KFATLKGSF----SEDGINEFLRELSY 116 (130)
T ss_pred HHHHHcCCCcc----CCCEEEEEecccC-ccccccCcc----CHHHHHHHHHHHHc
Confidence 47788888632 3799999998766 665 32333 35667677776653
No 341
>PRK11678 putative chaperone; Provisional
Probab=52.83 E-value=11 Score=40.19 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=17.8
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
++|||+||||.-+++++ +|+.
T Consensus 2 ~iGID~GTtNs~va~~~-~~~~ 22 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGKP 22 (450)
T ss_pred eEEEecCccceeeEEee-CCce
Confidence 58999999999999998 4543
No 342
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=51.84 E-value=33 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=15.4
Q ss_pred CCCeEEEEEEeC----CCCCCcHHHHHHHHH
Q psy224 383 KGQYVVLFFYPL----DFTFVCPTEIIAFSD 409 (547)
Q Consensus 383 ~gk~~ll~f~~~----~~cp~C~~~~~~l~~ 409 (547)
+.++++|+-- + +|||+|......|.+
T Consensus 6 ~~~~vvvf~k-~~~~~~~Cp~C~~ak~~L~~ 35 (90)
T cd03028 6 KENPVVLFMK-GTPEEPRCGFSRKVVQILNQ 35 (90)
T ss_pred ccCCEEEEEc-CCCCCCCCcHHHHHHHHHHH
Confidence 4555555533 2 588888776555544
No 343
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=50.45 E-value=13 Score=41.19 Aligned_cols=19 Identities=47% Similarity=0.812 Sum_probs=15.9
Q ss_pred EEEEEeCCceeEEEEEecC
Q psy224 6 VLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~ 24 (547)
++|||+|||++++++++..
T Consensus 1 viGID~Gt~~~~va~~~~~ 19 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG 19 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEeccCCEEEEEEEec
Confidence 6899999999999999853
No 344
>PHA03075 glutaredoxin-like protein; Provisional
Probab=50.06 E-value=14 Score=30.98 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=30.8
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
|.+++-|. .+.|+.|...-..|.++.++|.=..+.++.+-
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF 41 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSFF 41 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeeee
Confidence 55788888 99999999999989888888864445554443
No 345
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=49.66 E-value=40 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCe
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|+.+||||=|++++=.++++.+++.
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~~~~~ 25 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEVEGRR 25 (164)
T ss_pred CCEEEEEccccCceeEEEEEecCCe
Confidence 3579999999999999999988763
No 346
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=49.30 E-value=18 Score=40.57 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.2
Q ss_pred ceEEEEEeCCceeEEEEEecC
Q psy224 4 QVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~ 24 (547)
..++|||+|||+..+++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 368999999999999998753
No 347
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=48.95 E-value=32 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=25.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSE 32 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~ 32 (547)
.++++|+|+||.++-.+++|.+|+. ++-+
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d~~P-vag~ 56 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRDGQP-VAGC 56 (277)
T ss_pred CceEEEeecccceEEEEEEcCCCCe-EEEE
Confidence 4789999999999999999999998 5543
No 348
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=48.43 E-value=17 Score=40.23 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=18.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
..++|||+|||+..++++. +|++
T Consensus 19 ~~viGIDlGTT~S~va~~~-~~~~ 41 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT-NRKV 41 (595)
T ss_pred ceEEEEEcCcccEEEEEEe-CCee
Confidence 4689999999999998885 4443
No 349
>PRK10638 glutaredoxin 3; Provisional
Probab=48.05 E-value=42 Score=26.09 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|- .++||+|......|.+ +|+.+-.+..+.
T Consensus 4 v~ly~-~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~ 36 (83)
T PRK10638 4 VEIYT-KATCPFCHRAKALLNS-------KGVSFQEIPIDG 36 (83)
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 34455 8999999887666653 355554555543
No 350
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=48.02 E-value=15 Score=40.69 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=18.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCe
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.++|||+|||+.++++++. |+.
T Consensus 1 ~viGIDlGtt~s~va~~~~-g~~ 22 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG-GEP 22 (595)
T ss_pred CEEEEEeCcccEEEEEEEC-CEE
Confidence 3799999999999999974 543
No 351
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=48.00 E-value=37 Score=30.64 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 403 EIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
-.|++.++.++.+++|+.++.+|.+.+.....|.+++
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 3789999999999999999999999988888888755
No 352
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=47.42 E-value=15 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+|+||+||||+||=-+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 48999999999999999997753
No 353
>PRK13331 pantothenate kinase; Reviewed
Probab=47.36 E-value=22 Score=34.63 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=64.5
Q ss_pred cCCchhhhhhccccc-C-CCcEEEeccchhhhhhcc-----cccccccchhHHHHHhHHHHHHHHhCCCCchhHHHHHHH
Q psy224 168 ALGDLQCSVLATLQY-H-SDAIVNISTSAQIAFIDE-----MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLI 240 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~-~~~~is~GTs~~~~~~~~-----~~~~~~gg~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~ 240 (547)
=+.|-.++++|+-.. . .-+++.+||...+-+++. +|...+|-... .+.+.
T Consensus 96 lG~DR~~~~vaA~~~~~~~~iVID~GTA~T~D~V~~~g~~~GG~I~PG~~l~-----------------------~~AL~ 152 (251)
T PRK13331 96 LGIDRALALWGAGQTYGFPCLVIDAGTALTFTGVDSDRTLVGGAILPGLGLQ-----------------------LRSLA 152 (251)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCceEEEEEcCCCcEEEEEECccHHHH-----------------------HHHHH
Confidence 456888888887654 3 358999999999877754 33444442211 11111
Q ss_pred hccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEee
Q psy224 241 NASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGI 320 (547)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~ 320 (547)
+. .++. |.+..+..| ...+ .. + |...|-..++-|++..+...++. ..++.+--+|+++
T Consensus 153 ~~---Ta~L----------p~v~~~~~~----~~~i--G~-n-T~~ai~sGi~~g~~g~i~~~i~~-~~~~~~~~~vi~T 210 (251)
T PRK13331 153 DK---TAAL----------PQVELPPPL----PPRW--AT-N-TQEAIQSGVIYTILAGLRDFIED-WLSLFPDGKIVLT 210 (251)
T ss_pred Hh---hhcC----------CCCccccCC----Cccc--CC-C-HHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEE
Confidence 11 0111 222111111 1111 12 2 78888889999999999888885 2334554479999
Q ss_pred CCc
Q psy224 321 GSC 323 (547)
Q Consensus 321 GG~ 323 (547)
||.
T Consensus 211 GG~ 213 (251)
T PRK13331 211 GGD 213 (251)
T ss_pred CCC
Confidence 996
No 354
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=47.18 E-value=33 Score=33.25 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~ 416 (547)
.||+.|++.- +.|||.|-.+.=.|-.....|..
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcCC
Confidence 5899888888 99999999997777666667764
No 355
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=47.13 E-value=36 Score=34.13 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcC-------CcE-EEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSG-------INR-IIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g-------~~~-I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+-++-.+++|.-.+|..++ +++ +++ ++++||| +.-+.+.+.+++..+.|+.+.+++-...
T Consensus 254 eal~~~v~~Iveair~~Le-----~tpPeL~~DI~ergivltGGG-alLrglD~~i~~et~~pv~ia~~pL~~V 321 (342)
T COG1077 254 EALEEPLNGIVEAIRLVLE-----KTPPELAADIVERGIVLTGGG-ALLRGLDRLLSEETGVPVIIADDPLTCV 321 (342)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hCCchhcccHhhCceEEecch-HHhcCchHhHHhccCCeEEECCChHHHH
Confidence 4444445555555555544 432 455 9999999 9999999999999999999998875543
No 356
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=45.66 E-value=1.7e+02 Score=25.05 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.3
Q ss_pred EEEEEeCCCCC--Cc----HHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTF--VC----PTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp--~C----~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|-.|=|+.+|+ .| ..++.+++...+.++++|+.|.=.+..+
T Consensus 4 i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~ 50 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ 50 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT
T ss_pred eEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc
Confidence 56788999996 56 5679999999999999999887776643
No 357
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=45.53 E-value=83 Score=31.00 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh--cC-CcEEEeeCCchhhcHHHHHHHHHHhC--CceEEecch
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHR--SG-INRIIGIGSCLTRNHILQHYIERIYG--LQLIVEQDQ 348 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~--~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~--~~v~~~~~~ 348 (547)
+-.+-++++++|++..-+-. +.. .| ++-|+++|| ++++..+...|.+... .|+.+.+.+
T Consensus 269 ~~a~~~~~AmayQVaKeIG~--~savL~G~vDaIvLTGG-iA~~~~f~~~I~~~v~~iapv~v~PGE 332 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGA--MSAVLKGKVDAIVLTGG-IAYEKLFVDAIEDRVSWIAPVIVYPGE 332 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhcCCCCCEEEEecc-hhhHHHHHHHHHHHHhhhcceEecCCc
Confidence 45566788888888876653 322 23 889999999 5999999999998766 566665544
No 358
>PRK07157 acetate kinase; Provisional
Probab=45.07 E-value=20 Score=37.32 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCchhhcHH-HHHHHHHHhCC
Q psy224 289 FVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSCLTRNHI-LQHYIERIYGL 340 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~~~k~~~-~~q~~Ad~l~~ 340 (547)
.+=++|..+|.++..+-.+ ... .| ++-|+.+||. ..|.. +++.+.+-++.
T Consensus 295 A~lA~d~f~yri~k~Ig~~-~a~L~G~vDaiVFTgGI-Gen~~~vr~~i~~~l~~ 347 (400)
T PRK07157 295 AKFALDLYAQKIVDYLANY-INKIGKKIDAIVFTAGV-GENSAFVRELVINKINI 347 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEECCcc-ccCcHHHHHHHHhhccc
Confidence 3457899999999988753 333 33 8999999996 87776 77777765543
No 359
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=44.90 E-value=32 Score=30.01 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|.+||||+|+..+=.++-|..+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTTSS
T ss_pred CeEEEEEeCCCeEEEEEecCCCCe
Confidence 358999999999999999988764
No 360
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=44.71 E-value=1.6e+02 Score=24.35 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEE
Q psy224 401 PTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFI 480 (547)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~l 480 (547)
.....-|++..+++++.+..-+.|++++.....+..+- --+.+++-.+...+++.+++.. +|. +
T Consensus 34 ~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l~h------YPv--L 97 (105)
T TIGR03765 34 PASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGLRH------YPV--L 97 (105)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCCCc------ccE--E
Confidence 34677889999999999999999999998777665543 2345555556679999999884 675 6
Q ss_pred EcCCC
Q psy224 481 IDDKQ 485 (547)
Q Consensus 481 id~~G 485 (547)
|..+|
T Consensus 98 it~tg 102 (105)
T TIGR03765 98 ITATG 102 (105)
T ss_pred EecCc
Confidence 66666
No 361
>PRK13326 pantothenate kinase; Reviewed
Probab=44.63 E-value=25 Score=34.55 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
|...|-..++.|.+..+...++. .-++.+ .-.|+++||. .++++..+..+..+
T Consensus 187 T~~aI~sGi~~g~~~~I~g~i~~-~~~e~~~~~~vv~TGG~-------a~~l~~~~~~~~~~ 240 (262)
T PRK13326 187 TSDSVNSGVIYQYKYLIEGVYHD-LKRNYDREFNLIITGGN-------SNLILPLISVDFIF 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCC-------HHHHHhhCCCCcEE
Confidence 78888889999999888888885 233344 3479999996 45566666665554
No 362
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=44.39 E-value=65 Score=31.32 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCchhhhhhccccc-C-CCcEEEeccchhhhhhcc-----cccccccchhHHHHHhHHHHHHHHhCCCCchhHHHHHHHh
Q psy224 169 LGDLQCSVLATLQY-H-SDAIVNISTSAQIAFIDE-----MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLIN 241 (547)
Q Consensus 169 ~~D~~aa~~g~g~~-~-~~~~is~GTs~~~~~~~~-----~~~~~~gg~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~ 241 (547)
+.|-.++++|+.-. . .-+++..||...+-.+++ +|+..+|-... ++-+ +...+
T Consensus 106 G~DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~v~~~~~~lGG~I~PGi~l~-------~~aL------------~~~aa- 165 (251)
T COG1521 106 GADRIANAVAAYHKYGKAVVVVDFGTATTIDLVDEGGRYLGGAILPGITLS-------FEAL------------FARAA- 165 (251)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEEcCCeEEEEEEcCCCcEeeeEeccCHHHH-------HHHH------------HHHHh-
Confidence 45899999998775 2 358999999999977765 34444543221 0111 11110
Q ss_pred ccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh-c-CCcEEEe
Q psy224 242 ASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHR-S-GINRIIG 319 (547)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~-~-g~~~I~~ 319 (547)
+ +|.+...+ +..+.| .+ |.+.+-.+++-|.++.++..++. .++ . +-..+++
T Consensus 166 ------~----------lp~~~~~~-----~~~~~g---k~-T~~aiqsG~v~g~~~~i~~~~~~--~k~~~~~~~~~vl 218 (251)
T COG1521 166 ------K----------LPRVEIAR-----PESVPG---KN-TVEAIQSGVVYGYVGLIEGLLKE--IKEELKGGDAVVL 218 (251)
T ss_pred ------c----------CCcccccC-----ccccCC---cc-hHHHHHHhHHHHHHHHHHHHHHH--HHHHhCCCCeEEE
Confidence 1 12211111 122222 23 78899999999999999998884 444 3 4568999
Q ss_pred eCCc
Q psy224 320 IGSC 323 (547)
Q Consensus 320 ~GG~ 323 (547)
+||.
T Consensus 219 tGg~ 222 (251)
T COG1521 219 TGGL 222 (251)
T ss_pred eCCc
Confidence 9995
No 363
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=44.29 E-value=44 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=17.1
Q ss_pred EEEEEeCCceeEEEEEecC
Q psy224 6 VLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~ 24 (547)
+.+||+||.++|..+++.+
T Consensus 2 ~AvIDiGSNsirl~I~~~~ 20 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGV 20 (300)
T ss_pred eEEEEecCCeeeEEEEEec
Confidence 5789999999999999974
No 364
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=43.73 E-value=22 Score=39.63 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=18.3
Q ss_pred ceEEEEEeCCceeEEEEEecCCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
.+++|||+|||+.++++++. |+
T Consensus 19 ~~~iGIDlGTt~s~va~~~~-g~ 40 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS-GQ 40 (616)
T ss_pred CeEEEEEeccccEEEEEEEC-CE
Confidence 37899999999999998854 44
No 365
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=42.90 E-value=54 Score=31.74 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRN 327 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~ 327 (547)
|.+.|...++.|.+..+...++. .-++.+ .-+|+++||. ++.
T Consensus 177 T~~ai~sG~~~g~~~~i~~~i~~-~~~~~~~~~~vi~TGG~-a~~ 219 (243)
T TIGR00671 177 TREAVQSGAVYGVLGLIQGLLKD-WKKYFKRKFAVVITGGD-GKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCc-hHh
Confidence 78889999999999999888884 233344 3479999996 554
No 366
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=42.82 E-value=38 Score=36.48 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred CceEEEEEeCCceeEEEEEecC-CCe-eeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN-TRE-ELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~-g~~-~l~~~~~~~ 36 (547)
++.+.+||+||-|+|.++++.. |.. ++...+...
T Consensus 2 ~~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~v 37 (492)
T COG0248 2 ARRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIV 37 (492)
T ss_pred CceEEEEEecCCeEEEEEEeccCCccchhhhhhhhe
Confidence 4568899999999999999965 432 144444333
No 367
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=42.78 E-value=20 Score=40.32 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=17.0
Q ss_pred eEEEEEeCCceeEEEEEec
Q psy224 5 VVLGIDIGTTSVKVCLIDA 23 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~ 23 (547)
.++|||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 5899999999999999863
No 368
>PRK00976 hypothetical protein; Provisional
Probab=42.43 E-value=22 Score=35.90 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcH--HHHHHHHHHhCC
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNH--ILQHYIERIYGL 340 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~--~~~q~~Ad~l~~ 340 (547)
...++...+.++..+...+. .+ .++.|++.|| +++.+ .+.+.+.+.+..
T Consensus 241 ~~aid~~~~~LA~~IAnLi~--ll---DPe~IVLGGG-VS~~~e~~L~~~I~e~l~~ 291 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLL--LN---PEDNVVLAGS-VGEMDEPDVSERIKELLDK 291 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hc---CCCEEEEcCc-cccCchhHHHHHHHHHhcc
Confidence 44566666666666666554 23 3677888888 58886 566666665544
No 369
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=42.26 E-value=15 Score=36.52 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCC-chhhcH-HHHHHHHHHhCCceEEecch
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGS-CLTRNH-ILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG-~~~k~~-~~~q~~Ad~l~~~v~~~~~~ 348 (547)
.-++++.+++++++...+- + +.+...|+++|- |+.+.+ .+...+.+.|+.+|......
T Consensus 240 lA~dal~~~vameIasLl~---l-~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~k 299 (326)
T TIGR03281 240 LALDSLAMSVAMEIASLGL---L-DCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDSE 299 (326)
T ss_pred HHHHHHHHHHHHHHHhhee---c-cCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecch
Confidence 4557888888888876553 4 344448999987 337888 99999999999999887763
No 370
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=41.93 E-value=19 Score=35.78 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=27.0
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.++|+++|.+ .......+.++ .+|.++...+..+...
T Consensus 243 ~~~v~LiG~~-~L~~~Y~~AL~-~~G~~~~~~d~~~~~~ 279 (287)
T PF05035_consen 243 GQPVALIGSG-PLCALYARALA-AQGLPVRRVDADEAAL 279 (287)
T ss_dssp SSEEEEEE-H-HHHHHHHHHHH-HTT-EEEEEEHHHHHH
T ss_pred CCeEEEEeCH-HHHHHHHHHHH-HCCCCceeeCHHHHHH
Confidence 5899999998 78888877777 6899988876655544
No 371
>PRK12397 propionate kinase; Reviewed
Probab=41.78 E-value=24 Score=36.74 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchhhc-HHHHHHHHHHh
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLTRN-HILQHYIERIY 338 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~k~-~~~~q~~Ad~l 338 (547)
.+=++|..+|.++..+-.+ .... |++-|+.+||. ..| ..+++.+.+-+
T Consensus 297 A~lA~d~f~yri~k~IGa~-~a~lggvDaiVFTGGI-GEns~~vR~~ic~~L 346 (404)
T PRK12397 297 AKLALTLFAERIRATIGSY-IMQMGGLDALVFTGGI-GENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECCch-hhCCHHHHHHHHhhh
Confidence 3458899999999988753 2234 49999999996 655 45565555433
No 372
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=41.09 E-value=23 Score=39.62 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.2
Q ss_pred CCCceEEEEEeCCceeEEEEEecCC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g 25 (547)
|.+.|+||+|||+.||-=+++..+-
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~de 25 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDDE 25 (1088)
T ss_pred CCcceEEEeeccccceeeEEeeccc
Confidence 7889999999999999877775543
No 373
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=40.36 E-value=1.9e+02 Score=25.52 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEE
Q psy224 401 PTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFI 480 (547)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~l 480 (547)
.....-|++..+++++.+..-+.|++++.+.+++..+. --..+++-.+...+++.+++.+ +|. |
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l~H------YPv--L 135 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGLSH------YPV--L 135 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCCCc------ccE--E
Confidence 35678899999999999999999999998777665553 2355555556789999999884 675 5
Q ss_pred EcCCC
Q psy224 481 IDDKQ 485 (547)
Q Consensus 481 id~~G 485 (547)
|..+|
T Consensus 136 It~~g 140 (142)
T PF11072_consen 136 ITATG 140 (142)
T ss_pred eecCC
Confidence 66555
No 374
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=40.26 E-value=70 Score=32.71 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHH---HHhC---CceEEecchhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIE---RIYG---LQLIVEQDQAMR 351 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~A---d~l~---~~v~~~~~~~~~ 351 (547)
.+++|++++++--++.++-++.-. .-+..++++|+.+|.-+..++..++.++ +.+. ......+..+..
T Consensus 258 ~~~~Dia~sll~mv~~nIg~la~l-~A~~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~ 331 (341)
T PF03630_consen 258 FSKEDIAKSLLNMVSNNIGQLAYL-HAKIHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYL 331 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-HHHHHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchh
Confidence 478999999999999999987651 2233579999999995334567788888 4443 333345555443
No 375
>KOG1369|consensus
Probab=40.16 E-value=45 Score=35.49 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=37.0
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
-.+++||+|+|+.|..++...|.. .+......|.. |+ .......+++|+-+..++.-.+.
T Consensus 86 G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~i--p~------~~m~gt~~~Lfd~Ia~~l~~F~~ 146 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAI--PE------EIMQGTGEELFDFIARCLADFLD 146 (474)
T ss_pred CCEEEEecCCCceEEEEEEecCCcccceeeeeeEec--CH------HHHcCchHHHHHHHHHHHHHHHH
Confidence 358999999999999999987762 02222222221 11 11222667788888777765443
No 376
>PLN03184 chloroplast Hsp70; Provisional
Probab=40.08 E-value=25 Score=39.59 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=18.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
..++|||+|||+.++++++. |+
T Consensus 39 ~~viGIDlGTt~s~va~~~~-g~ 60 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEG-GK 60 (673)
T ss_pred CCEEEEEeCcCcEEEEEEEC-Ce
Confidence 35899999999999999864 44
No 377
>KOG1794|consensus
Probab=39.13 E-value=35 Score=33.69 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=28.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
+.+|.|++=|.|+.|.+++|+++++ +.......
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~-~~~a~~~~ 34 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTI-LGRAVGGG 34 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCE-eeEeeccc
Confidence 5789999999999999999999998 77665444
No 378
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=39.12 E-value=87 Score=30.81 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh--CCceEEec
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY--GLQLIVEQ 346 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l--~~~v~~~~ 346 (547)
.++.+++.+.++-.+...... .++..+.+.++++||- +.|+.+++.+.+.. +..+..++
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~-a~~~~~~~~lv~~GGV-aaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPR-ALEKPRAKSLVVSGGV-AANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEESGG-GGHHHHHHHHHHHHHHTSEEE---
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhcccccchHHHH-HHHHHHHHHHHHHHHcCCEEEcCC
Confidence 345666666666665555543 3455668999999996 99999999876543 44444443
No 379
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=39.06 E-value=1.7e+02 Score=27.67 Aligned_cols=72 Identities=7% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEE
Q psy224 401 PTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFI 480 (547)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~l 480 (547)
..|+.-+.+.+... ..+.+|.+..+..+..+ .++-+++.|..+.+.++|++. ..|+ +
T Consensus 131 ~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~-------------~l~~~vYfdQ~G~Lt~rF~I~------~VPA--v 187 (209)
T PRK13738 131 PAQVAWMKRQTPPT--LESKIILVQGSIPEMSK-------------ALDSRIYFDQNGVLCQRFGID------QVPA--R 187 (209)
T ss_pred HHHHHHHHHhhhcc--CCceEEEECCCHHHHHH-------------HhCCceEEcCcchHHHhcCCe------eece--E
Confidence 35665555433322 25788888776544333 455677889889999999998 4888 4
Q ss_pred Ec--CCCcEEEEEecCC
Q psy224 481 ID--DKQNLRQITINDL 495 (547)
Q Consensus 481 id--~~G~v~~~~~~~~ 495 (547)
|. .+|+......-+.
T Consensus 188 V~~~q~G~~l~I~E~~~ 204 (209)
T PRK13738 188 VSAVPGGRFLKVEFIPA 204 (209)
T ss_pred EEEcCCCCEEEEEEECC
Confidence 55 7888887774333
No 380
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=78 Score=35.26 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhCC
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYGL 340 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~ 340 (547)
+++.+..+...+++-.+.+.+.. +.+ .|+++|.++||. ..|+.+++-+++.+..
T Consensus 665 ~~~~iA~~fh~~la~~~~e~~~~--~a~~~gi~~V~lsGGV-f~N~~l~~~~~~~l~~ 719 (750)
T COG0068 665 EPEKIATKFHNALAEGFAELAVE--LAKKYGINKVVLSGGV-FQNRLLLERLAKYLKK 719 (750)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--HHHhcCccEEEeeCCe-eecHHHHHHHHHHHHh
Confidence 67788888888888888877763 444 679999999996 8999999999998875
No 381
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=38.20 E-value=1.8e+02 Score=31.98 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=20.8
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCc---EEEEE
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQN---LRQIT 491 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~---v~~~~ 491 (547)
.+.+.++.|++. ..|++.|+|.+|+ |++.-
T Consensus 407 ~~~~~~~~~~v~------~~P~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 407 EEPESETLPKIT------KLPTVALLDDDGNYTGLKFHG 439 (555)
T ss_pred cchhhHhhcCCC------cCCEEEEEeCCCcccceEEEe
Confidence 356777889976 3798888876654 55544
No 382
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=38.19 E-value=35 Score=32.08 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.3
Q ss_pred Cchhhhhhccccc--CCCcEEEeccchhhhhhcc
Q psy224 170 GDLQCSVLATLQY--HSDAIVNISTSAQIAFIDE 201 (547)
Q Consensus 170 ~D~~aa~~g~g~~--~~~~~is~GTs~~~~~~~~ 201 (547)
.|-.++++|+-.. ..-+++.+||...+-+++.
T Consensus 105 ~DR~~~~~aa~~~~~~~~lViD~GTA~Tid~v~~ 138 (206)
T PF03309_consen 105 VDRWAAAIAARKLYGQPCLVIDAGTATTIDVVDA 138 (206)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEESSEEEEEEEET
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCeEEEEEEcC
Confidence 4788888888763 4568999999999877764
No 383
>PRK10824 glutaredoxin-4; Provisional
Probab=38.01 E-value=47 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=16.5
Q ss_pred CCeEEEEEEeC----CCCCCcHHHHHHHHHH
Q psy224 384 GQYVVLFFYPL----DFTFVCPTEIIAFSDR 410 (547)
Q Consensus 384 gk~~ll~f~~~----~~cp~C~~~~~~l~~~ 410 (547)
.++++|+-- + ++||+|.....-|+++
T Consensus 14 ~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMK-GSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEEC-CCCCCCCCchHHHHHHHHHHc
Confidence 344555433 3 4999999877666554
No 384
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=37.86 E-value=41 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+.+||+|+||-+|=+++-|..+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~~~ 25 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILGSL 25 (141)
T ss_pred ceEEEEecCCceEEEEEecCCCcc
Confidence 578999999999999999988754
No 385
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=37.58 E-value=27 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=15.6
Q ss_pred EEEEeCCceeEEEEEecCCCe
Q psy224 7 LGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+|||+||+++++... .+|.+
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~ 24 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIV 24 (333)
T ss_pred eEEecCcceEEEEEC-CCCEE
Confidence 899999999997764 34544
No 386
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=51 Score=31.62 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCc
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~ 419 (547)
+..++++++.|+ -..||+|...++.+.+.+....+..+
T Consensus 81 ~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~~ 118 (244)
T COG1651 81 NPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVRL 118 (244)
T ss_pred CCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCce
Confidence 333488888888 99999999999999997777765543
No 387
>KOG2603|consensus
Probab=37.06 E-value=1.6e+02 Score=29.48 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=73.4
Q ss_pred cCCCCCeEEEEEE----eCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcce-eeec
Q psy224 380 SQYKGQYVVLFFY----PLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI-PILS 454 (547)
Q Consensus 380 ~~~~gk~~ll~f~----~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~f-p~l~ 454 (547)
+..++ +.+|.+| |...|..|..+..+++.+.+.++..+ ++ .+.. .+=| .+-.
T Consensus 56 ~~prN-ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~----------~~-----sn~t-------klFF~~Vd~ 112 (331)
T KOG2603|consen 56 PPPRN-YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNS----------PF-----SNGT-------KLFFCMVDY 112 (331)
T ss_pred CCCCC-eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccC----------CC-----CCcc-------eEEEEEEec
Confidence 33344 4455555 33579999999999999998887432 11 1100 1222 3334
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcC-CCcEEEEEecC-CCCCCCHHHHHHHHHhhHhhhhcCccccCCccC
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDD-KQNLRQITIND-LPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKP 527 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~-~~~~~~~~~il~~l~~l~~~~~~~~~~~~~w~~ 527 (547)
|+.+++.+++++. ..|..+++.| .|+.++...-+ .+.+...+.+.+.++...-..--.+.-|.+|.+
T Consensus 113 ~e~p~~Fq~l~ln------~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp~~s~ 181 (331)
T KOG2603|consen 113 DESPQVFQQLNLN------NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPPNYSK 181 (331)
T ss_pred cccHHHHHHhccc------CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCCcccc
Confidence 5568888999988 5899999955 57777444212 234445777777777655333334667999954
No 388
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=36.89 E-value=1.1e+02 Score=26.33 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=25.9
Q ss_pred ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 474 ~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.|+..|+ |||++++-.-...-.+++.++|.+.|+..
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 46888999 79999988744444677888888877653
No 389
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=35.83 E-value=42 Score=28.02 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=25.1
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhcc
Q psy224 391 FYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIP 439 (547)
Q Consensus 391 f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~ 439 (547)
+|..++||.|+....-|.+ +|+.+-.+.. ++ ..++.++.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 3448999999887765554 3555444443 33 34556666543
No 390
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=35.58 E-value=3e+02 Score=30.83 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=70.4
Q ss_pred hccCCCCCCeeeccccCCceeeEeccC-C--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHH--------HHhhCC-----
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQ-Y--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAE--------EFKKIN----- 418 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~-~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~--------~~~~~~----- 418 (547)
..+|..+|++.+..+.++ +++.+.+ + .|++.|+.|-...-.+.....+..+.+..+ .|...+
T Consensus 463 ~~~G~r~~~~~v~~~~d~--~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (634)
T PRK08294 463 FPIGKRFHSAPVIRLADA--KPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDA 540 (634)
T ss_pred CCCceeCCCCceeeccCC--CchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCc
Confidence 348999999998875667 4666553 3 579998888733333444444444333331 111111
Q ss_pred -cEEEEEeCCChhh--HHHHhhccccCCCCCCc-cee-eecC--CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 419 -TQVIACSTDSHFS--HLAWCNIPRNKGGLGDM-AIP-ILSD--KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 419 -~~vi~is~d~~~~--~~~~~~~~~~~~~~~~~-~fp-~l~D--~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+.++.|...+..+ +..+.+.++.+-...++ .|. +..| ......+.|||..+ .-..+|+=|||-|-...
T Consensus 541 ~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~-----~g~~vvvRPD~~v~~~~ 615 (634)
T PRK08294 541 VIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD-----RGAVVVVRPDQYVANVL 615 (634)
T ss_pred EEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC-----ceeEEEECCCCceEEEe
Confidence 6677776654222 22222221111111133 332 3444 22457788997642 34688999999887765
No 391
>PRK13324 pantothenate kinase; Reviewed
Probab=35.19 E-value=40 Score=32.99 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~ 323 (547)
|...+...++-|.+..+...++. ..++.+ .-+++++||.
T Consensus 185 T~~ai~sG~~~g~~~~i~~~~~~-~~~~~~~~~~vi~TGG~ 224 (258)
T PRK13324 185 TKTNIRSGLYYGHLGALKELKRR-SVEEFGSPVYTIATGGF 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCC
Confidence 67777778888888888777774 233344 3378999996
No 392
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=34.97 E-value=28 Score=38.64 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.5
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
++|||+|||+.++++++. |+.
T Consensus 1 ~iGIDlGTtns~va~~~~-g~~ 21 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS-GVP 21 (599)
T ss_pred CEEEEEccccEEEEEEEC-CEE
Confidence 489999999999999975 443
No 393
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=34.79 E-value=94 Score=25.89 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=34.1
Q ss_pred eEeccCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 376 NIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 376 ~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.-.+++|.+ .+-|+=|+. |.+|+ -..+....+++.+.|+++|-+++
T Consensus 27 ~g~F~~y~~~~~elvgf~~---CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFFT---CGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred cCccccCCCCCeEEEEEee---CCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 446888865 577888874 66666 56667777778888999888875
No 394
>PRK13328 pantothenate kinase; Reviewed
Probab=34.71 E-value=44 Score=32.66 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
|.+.|...++-|++..+...++. +++ .+ .-.|+++||. .++++..+..+..+
T Consensus 185 T~~ai~sG~~~~~~~~i~~~i~~--~~~~~~~~~~vi~TGGd-------a~~l~~~l~~~~~~ 238 (255)
T PRK13328 185 TPDAISAGCLAAQAGLIERAWRD--LAARWQAPVRLVLSGGA-------ADAVAPALTVPHTR 238 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCEEEEECCC-------HHHHHhhCCCCCEE
Confidence 78888888888888888888874 433 44 3579999996 45566666555544
No 395
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=34.70 E-value=47 Score=28.86 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.2
Q ss_pred EEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
|+|||+|....-+++++.+|.. +....++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~-~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEK-LRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcE-EEEEEEec
Confidence 6899999999999999999966 55554443
No 396
>KOG1752|consensus
Probab=34.42 E-value=79 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=11.7
Q ss_pred EEEEEeCCCCCCcHH
Q psy224 388 VLFFYPLDFTFVCPT 402 (547)
Q Consensus 388 ll~f~~~~~cp~C~~ 402 (547)
||.|= .+|||+|..
T Consensus 16 VVifS-Ks~C~~c~~ 29 (104)
T KOG1752|consen 16 VVIFS-KSSCPYCHR 29 (104)
T ss_pred EEEEE-CCcCchHHH
Confidence 56677 899999998
No 397
>PRK10854 exopolyphosphatase; Provisional
Probab=33.90 E-value=63 Score=35.14 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.6
Q ss_pred CceEEEEEeCCceeEEEEEecC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~ 24 (547)
++.+.+||+||.|+|..+++.+
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~ 31 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVV 31 (513)
T ss_pred CCEEEEEEeccchheEEEEEec
Confidence 4678999999999999999964
No 398
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=33.74 E-value=1.4e+02 Score=31.33 Aligned_cols=48 Identities=4% Similarity=0.043 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc-C-CcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 290 VALCEGIINNIHDIMNRSVLHRS-G-INRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~-g-~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
+-++|..+|.++..+-.| .... | ++-|+.+||. . ++..+++.+.+-++
T Consensus 299 ~lA~d~f~yri~k~Iga~-~a~L~g~vDaiVfTGGI-gE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 299 KLALDVFVYRLAKYIGSY-AAALNGRLDAIVFTAGI-GENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEcCcc-ccCCHHHHHHHHhhhh
Confidence 448899999999988753 3334 4 9999999995 8 88899988887554
No 399
>PRK03011 butyrate kinase; Provisional
Probab=33.73 E-value=38 Score=34.90 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc--CCcEEEeeCCchhhcHHHHHHHHHHhC--CceEEecchhh
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRS--GINRIIGIGSCLTRNHILQHYIERIYG--LQLIVEQDQAM 350 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~--g~~~I~~~GG~~~k~~~~~q~~Ad~l~--~~v~~~~~~~~ 350 (547)
...+.+++-.++.+...+-.+ ..-. +++.|+++||. +.++.+++.+.+.+. .|+.+......
T Consensus 268 ~~A~~ald~~~~~lak~I~~l-~~~L~gdpD~IVlgGGI-~~~~~l~~~I~~~l~~~~pv~i~p~~~e 333 (358)
T PRK03011 268 EKAKLVYEAMAYQIAKEIGAM-AAVLKGKVDAIVLTGGL-AYSKRLVERIKERVSFIAPVIVYPGEDE 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEeCcc-ccCHHHHHHHHHHHHhhCCeEEEeCCCH
Confidence 345667888888888776642 2334 48899999995 888888887766555 36666554443
No 400
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=33.67 E-value=31 Score=35.12 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.9
Q ss_pred EEEEeCCceeEEEEEecCCCe
Q psy224 7 LGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 7 lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+|||+||++++.... .+|.+
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v 25 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIV 25 (336)
T ss_pred eEEEcccccEEEEEC-CCCEE
Confidence 899999999999765 44544
No 401
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=33.62 E-value=97 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCchhhhhhccccc-C-CCcEEEeccchhhhhhcc
Q psy224 169 LGDLQCSVLATLQY-H-SDAIVNISTSAQIAFIDE 201 (547)
Q Consensus 169 ~~D~~aa~~g~g~~-~-~~~~is~GTs~~~~~~~~ 201 (547)
+.|-.++++|+-.. + .-+++.+||...+-++++
T Consensus 100 G~DR~a~~~aA~~~~~~~~lViD~GTA~Tid~v~~ 134 (243)
T TIGR00671 100 GIDRVANALAAIKFYGFNVVVVDAGTALTIDLVDQ 134 (243)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcC
Confidence 46888999988543 3 458999999999977764
No 402
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=33.49 E-value=1.1e+02 Score=32.34 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=43.2
Q ss_pred eEEEEEeCCceeEEEEEec--CCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchhhhhhce
Q psy224 5 VVLGIDIGTTSVKVCLIDA--NTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDHLKQVKH 79 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~--~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~~~~~~~ 79 (547)
++.|+||||+.+++++--. +|++ ++...+.+.. .-....-.|.+...+++.+++.....++...++.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~Sr--------Gik~G~I~di~~~~~sI~~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSR--------GIKKGVIVDLDAAAQSIKKAVEAAERMAGCEIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCc--------ccccceEEcHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 7999999999999999874 3333 1333222211 0112346789999999999987765555444443
No 403
>PRK13327 pantothenate kinase; Reviewed
Probab=33.42 E-value=1.5e+02 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~ 323 (547)
|.+.+...++-+++..+...++. +++ .+ .-+|+++||.
T Consensus 171 T~~ai~sG~~~~~~~~I~~~i~~--~~~~~~~~~~vilTGG~ 210 (242)
T PRK13327 171 TDDALTSGCDGAAVALIERSLQH--AHRSLGQPVRLLVHGGG 210 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCEEEEECCC
Confidence 78888888888888888888774 443 44 3479999997
No 404
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=33.01 E-value=77 Score=34.29 Aligned_cols=27 Identities=11% Similarity=0.189 Sum_probs=21.9
Q ss_pred hhhcCCcEEEeeCCchhhcHHHHHHHHH
Q psy224 309 LHRSGINRIIGIGSCLTRNHILQHYIER 336 (547)
Q Consensus 309 l~~~g~~~I~~~GG~~~k~~~~~q~~Ad 336 (547)
++..++++|++++.| -+-..+.+++..
T Consensus 276 ~~~~~~~~i~vs~~g-lREGl~~~~~~~ 302 (496)
T PRK11031 276 FEELNIESMTLAGGA-LREGLVYGMLHL 302 (496)
T ss_pred HHHcCcCEEEECCch-HHHHHHHHHHhh
Confidence 455678999999998 788888887765
No 405
>KOG2708|consensus
Probab=32.97 E-value=1.5e+02 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY 338 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l 338 (547)
.+++++-.++.|-+.-.+-++.++ .+...+-+++.++||. .-|.-+.+|.+.+-
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTER-AMAh~~s~evLIVGGV-GCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITER-AMAHCGSKEVLIVGGV-GCNERLQEMMAIMC 278 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCcEEEEecc-cccHHHHHHHHHHH
Confidence 378999999999998888888886 5666677889999995 88888888887644
No 406
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=32.68 E-value=31 Score=26.91 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|- ...|+.|......|.++..+ .++.+-.|..+
T Consensus 2 l~l~~-k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~ 37 (81)
T PF05768_consen 2 LTLYT-KPGCHLCDEAKEILEEVAAE---FPFELEEVDID 37 (81)
T ss_dssp EEEEE--SSSHHHHHHHHHHHHCCTT---STCEEEEEETT
T ss_pred EEEEc-CCCCChHHHHHHHHHHHHhh---cCceEEEEECC
Confidence 34455 88999998877777765433 34677666665
No 407
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=32.68 E-value=70 Score=27.64 Aligned_cols=64 Identities=3% Similarity=-0.054 Sum_probs=35.5
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
.+|...+||.|+....-| .++|+.+-.+.. ++ .+.+.+|.+.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhCC
Confidence 345599999999865443 344555555543 33 35566666654 4444334444455555554
Q ss_pred Cc
Q psy224 466 VL 467 (547)
Q Consensus 466 v~ 467 (547)
..
T Consensus 69 ~~ 70 (131)
T PRK01655 69 VD 70 (131)
T ss_pred CC
Confidence 43
No 408
>PRK13322 pantothenate kinase; Reviewed
Probab=32.40 E-value=45 Score=32.39 Aligned_cols=38 Identities=13% Similarity=-0.039 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh-cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR-SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~-~g-~~~I~~~GG~ 323 (547)
|...+...++.|++..+...++. +++ .+ .-+|+++||.
T Consensus 177 T~~ai~sG~~~~~~~~i~~~i~~--~~~~~~~~~~vilTGG~ 216 (246)
T PRK13322 177 TVDAVERGCLLMLRGFIESQLEQ--ARELWGPDFEIFLTGGD 216 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCCCEEEEECCC
Confidence 78888888888888888888874 443 44 3479999996
No 409
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=32.13 E-value=76 Score=26.59 Aligned_cols=63 Identities=3% Similarity=-0.020 Sum_probs=37.3
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
.+|....|+.|+.....|.+ +|+.+-.+.. ++ ..++.+|.+.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l~ 68 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNLN 68 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHcC
Confidence 34448999999887655443 4555555554 33 35666777654 4455544445556666655
Q ss_pred C
Q psy224 466 V 466 (547)
Q Consensus 466 v 466 (547)
.
T Consensus 69 ~ 69 (115)
T cd03032 69 I 69 (115)
T ss_pred C
Confidence 4
No 410
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=32.00 E-value=58 Score=28.68 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=21.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+.+++||+|+-+.-.++++.+++.
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~ 24 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNK 24 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCe
Confidence 358999999999999999987765
No 411
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=31.96 E-value=66 Score=26.33 Aligned_cols=42 Identities=2% Similarity=-0.160 Sum_probs=23.9
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhcc
Q psy224 391 FYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIP 439 (547)
Q Consensus 391 f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~ 439 (547)
+|..++||.|.....-|++ +|+.+-.+.. ++ ..+..++..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 3448999999887655443 3544444443 32 34555555543
No 412
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=31.75 E-value=67 Score=28.81 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=44.9
Q ss_pred eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh---hhHHHHhhccc
Q psy224 366 GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH---FSHLAWCNIPR 440 (547)
Q Consensus 366 l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~---~~~~~~~~~~~ 440 (547)
+-| ++| +++.+|..|... -... ..| ..+...+++..++++|.+++-++.-+. ...+.|++.+.
T Consensus 3 vsD-IDG---TiT~SD~~G~i~-~~~G-~d~------~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~ 68 (157)
T PF08235_consen 3 VSD-IDG---TITKSDVLGHIL-PILG-KDW------THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQ 68 (157)
T ss_pred EEe-ccC---CcCccchhhhhh-hccC-chh------hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHH
Confidence 346 789 899999888632 2232 333 457788889999999999999998763 45567777653
No 413
>PRK07058 acetate kinase; Provisional
Probab=30.52 E-value=1.4e+02 Score=31.07 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.4
Q ss_pred CCCceEEEEEeCCceeEEEEEecCC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g 25 (547)
|+.+++|.|..|+||+|..|||.+.
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~ 25 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDG 25 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCC
Confidence 6778999999999999999999654
No 414
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=30.50 E-value=71 Score=26.86 Aligned_cols=60 Identities=10% Similarity=-0.023 Sum_probs=33.2
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--C--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 392 YPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--S--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 392 ~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
|...+||.|+....-|.+ +|+.+-.+... + ..+..++.+.. +.++.-+........+.++
T Consensus 4 Y~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 4 YGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred EeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCC
Confidence 338999999887765554 45555555543 2 24455555544 4444333334444445544
No 415
>PRK03011 butyrate kinase; Provisional
Probab=29.60 E-value=1.6e+02 Score=30.29 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=23.3
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
+.+|.|.-|+||+|.++|+.+. . +......+
T Consensus 2 ~~il~inpgststk~a~~~~~~-~-~~~~~~~h 32 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEK-P-IFEETLRH 32 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCc-e-eeeecccc
Confidence 4689999999999999998544 3 44554444
No 416
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=29.56 E-value=92 Score=26.99 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=36.9
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 391 FYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 391 f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
+|.-.+|+.|+.... .++++|+.+-.+.. ++ .+.+.+|.+.. +.++.-+........+..+.
T Consensus 4 iY~~~~C~~crkA~~-------~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L~~ 69 (132)
T PRK13344 4 IYTISSCTSCKKAKT-------WLNAHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKALDC 69 (132)
T ss_pred EEeCCCCHHHHHHHH-------HHHHcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhCCc
Confidence 444899999988553 34445666555554 33 46677777765 55554444445555555553
No 417
>PRK10026 arsenate reductase; Provisional
Probab=29.19 E-value=1.9e+02 Score=25.42 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=51.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe--CCC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 389 LFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS--TDS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 389 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is--~d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
+.+|.-..|..|+..+.-|++. |+.+-.+. -++ .+.+..|.++. +++..-+.-..+..++.+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~-------g~~~~~lint~~~~yr~L 69 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADM-------GISVRALLRKNVEPYEEL 69 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhC-------CCCHHHHHHcCCchHHHc
Confidence 3344488899888876655543 44444443 444 46677777754 433222222333444444
Q ss_pred CCcccC------------CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 465 GVLNEE------------TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 465 ~v~~~~------------~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
+..... ++..+..=+|++.+|.++-+ ..+.+++.|
T Consensus 70 ~~~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R---------p~e~v~~~l 116 (141)
T PRK10026 70 GLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR---------PSEVVLEIL 116 (141)
T ss_pred CCCccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC---------CHHHHHHHh
Confidence 432210 12234445677777766533 456777776
No 418
>PRK12559 transcriptional regulator Spx; Provisional
Probab=29.11 E-value=1e+02 Score=26.71 Aligned_cols=64 Identities=5% Similarity=-0.007 Sum_probs=35.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe--CCC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS--TDS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is--~d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
.+|...+|+.|+....-|. ++|+.+-.+. -++ .+.+++|.+.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCC
Confidence 3444899999998664443 3455544444 343 46667777753 3443333334455555555
Q ss_pred Cc
Q psy224 466 VL 467 (547)
Q Consensus 466 v~ 467 (547)
..
T Consensus 69 ~~ 70 (131)
T PRK12559 69 IN 70 (131)
T ss_pred CC
Confidence 43
No 419
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=28.91 E-value=79 Score=30.76 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
.|.||+|.|+++.++++ +++. ...-+.++
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~-~~~~r~~t 30 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKV-VQTWRLAT 30 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeE-EEEEeecc
Confidence 58899999999999999 5554 55444444
No 420
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=28.50 E-value=3.5e+02 Score=22.60 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhCCcEEEEE--eCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEc
Q psy224 405 IAFSDRAEEFKKINTQVIAC--STDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIID 482 (547)
Q Consensus 405 ~~l~~~~~~~~~~~~~vi~i--s~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid 482 (547)
..|+++..+..+.|+.++.= ..+.-.+..++.++.. ...+-.-.+.. |..+.++|+|. ..|+.++..
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~---~~~~~~~~v~I--dP~~F~~y~I~------~VPa~V~~~ 79 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELL---RKDDPCPGVQI--DPRLFRQYNIT------AVPAFVVVK 79 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHh---hccCCCcceeE--ChhHHhhCCce------EcCEEEEEc
Confidence 34666666666667655443 3333333333333331 11121123333 57899999999 589988886
Q ss_pred C
Q psy224 483 D 483 (547)
Q Consensus 483 ~ 483 (547)
.
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 5
No 421
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=28.35 E-value=3.9e+02 Score=23.10 Aligned_cols=22 Identities=5% Similarity=0.233 Sum_probs=18.1
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCC
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDK 484 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~ 484 (547)
|..+.++|+|. ..|+.+++..+
T Consensus 60 dP~lF~~f~I~------~VPa~V~~~~~ 81 (130)
T TIGR02742 60 DPQWFKQFDIT------AVPAFVVVKDG 81 (130)
T ss_pred ChHHHhhcCce------EcCEEEEECCC
Confidence 57899999999 58998888654
No 422
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=27.27 E-value=1.3e+02 Score=28.68 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=49.2
Q ss_pred HHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcc-eeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE
Q psy224 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMA-IPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 410 ~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
.+.++++.|+.||.+|..+..++..+.+.. +++ .|+++.....+.-. ...+=+|-.++.+
T Consensus 31 v~~el~d~G~~Vi~~SSKT~aE~~~l~~~l-------~v~~~p~iaEnG~aI~~p------------~~~~~~~~~~r~~ 91 (274)
T COG3769 31 VLLELKDAGVPVILCSSKTRAEMLYLQKSL-------GVQGLPLIAENGAAIYLP------------KGWFPFDGKPREI 91 (274)
T ss_pred HHHHHHHcCCeEEEeccchHHHHHHHHHhc-------CCCCCceeecCCceEEec------------ccccccCCCCcee
Confidence 455667789999999999888887777766 666 77777543322110 1123344444544
Q ss_pred EEEecCCCCCCCHHHHHHHHHhhH
Q psy224 489 QITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 489 ~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.-+. ....+..+++|.+++++|.
T Consensus 92 ~g~~-~~elg~~l~~ire~l~kLe 114 (274)
T COG3769 92 SGIS-HIELGKVLEKIREKLDKLE 114 (274)
T ss_pred cceE-eeehhhhHHHHHHHHHHHH
Confidence 3331 1223345677777776665
No 423
>PRK13331 pantothenate kinase; Reviewed
Probab=26.89 E-value=4.2e+02 Score=25.78 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=18.1
Q ss_pred ceEEEEEeCCceeEEEEEec
Q psy224 4 QVVLGIDIGTTSVKVCLIDA 23 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~ 23 (547)
+.+|.||+|-|++|.++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~ 26 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSG 26 (251)
T ss_pred CcEEEEEeCCCcEEEEEEEC
Confidence 56799999999999999994
No 424
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.64 E-value=51 Score=33.50 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.3
Q ss_pred EEEEEeCCceeEEE
Q psy224 6 VLGIDIGTTSVKVC 19 (547)
Q Consensus 6 ~lgIDiGTtsiK~~ 19 (547)
-+|||+||++++..
T Consensus 3 ~igIDLGT~~t~i~ 16 (326)
T PF06723_consen 3 DIGIDLGTSNTRIY 16 (326)
T ss_dssp EEEEEE-SSEEEEE
T ss_pred ceEEecCcccEEEE
Confidence 58999999998874
No 425
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=26.56 E-value=1.3e+02 Score=28.02 Aligned_cols=80 Identities=8% Similarity=0.097 Sum_probs=50.2
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHHHHhhccccCCCCCCcceeeec------CCChH
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHLAWCNIPRNKGGLGDMAIPILS------DKSMS 459 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~~~~~~~~~~~~~~~~~fp~l~------D~~~~ 459 (547)
.+.+|. ...|+.|...+..+.. ....+.|+.|.. .+...++.|...+ +++-..+. -.+.-
T Consensus 111 rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~-------~Idp~~V~~~~ITLNHD~G 177 (200)
T TIGR03759 111 RLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH-------QIDPAKVRSRQITLNHDNG 177 (200)
T ss_pred eEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc-------CCCHHHeecCeeEEecCcc
Confidence 466677 7999999988877744 345688888874 3567888999876 44422211 12333
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCC
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQ 485 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G 485 (547)
-...||+.. ..|..+. ..+|
T Consensus 178 ~w~~lg~~g-----~lP~~l~-q~~g 197 (200)
T TIGR03759 178 RWLQLGLQG-----QLPAVVQ-QVNG 197 (200)
T ss_pred hHHHccCCC-----CCCEEEE-ecCC
Confidence 445777643 3677644 4454
No 426
>KOG2961|consensus
Probab=25.96 E-value=2e+02 Score=25.72 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=39.9
Q ss_pred eEeccCCCC-CeEEEEEEeCCCC-------CCcHHHHHHHHHHHHHHhhCCcEEEEEeC-----CChhhHHHHhhccccC
Q psy224 376 NIKLSQYKG-QYVVLFFYPLDFT-------FVCPTEIIAFSDRAEEFKKINTQVIACST-----DSHFSHLAWCNIPRNK 442 (547)
Q Consensus 376 ~~~l~~~~g-k~~ll~f~~~~~c-------p~C~~~~~~l~~~~~~~~~~~~~vi~is~-----d~~~~~~~~~~~~~~~ 442 (547)
+....+++| |.+|+. ...| ...+.+++.+.+....|.++++-++.-|. |....+.+-.++
T Consensus 34 p~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~---- 106 (190)
T KOG2961|consen 34 PWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEA---- 106 (190)
T ss_pred CcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHH----
Confidence 344455555 544443 3334 24466888888888899887777666553 222233333332
Q ss_pred CCCCCcceeeecC
Q psy224 443 GGLGDMAIPILSD 455 (547)
Q Consensus 443 ~~~~~~~fp~l~D 455 (547)
.++.|++.-
T Consensus 107 ----k~gIpVlRH 115 (190)
T KOG2961|consen 107 ----KIGIPVLRH 115 (190)
T ss_pred ----hhCCceEee
Confidence 677888754
No 427
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=25.50 E-value=88 Score=32.64 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc--CCcEEEeeCCchhhc-HHHHHHHHHHhC
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRS--GINRIIGIGSCLTRN-HILQHYIERIYG 339 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~--g~~~I~~~GG~~~k~-~~~~q~~Ad~l~ 339 (547)
.+-++|..+|.++..+-.+ .... +++-|+.+||. +.| ...++.+.+.+.
T Consensus 295 A~la~d~~~y~i~k~Ig~~-~a~l~G~vDaivfTGGi-ge~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAY-AAVLEGGVDAIVFTGGI-GENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHTSS-SEEEEEHHH-HHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhccCCCEEEEcccc-ccchHHHHHHHHhhcC
Confidence 4557899999999988753 3333 49999999995 865 566677766544
No 428
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=25.28 E-value=2.2e+02 Score=26.77 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEE
Q psy224 402 TEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFII 481 (547)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~li 481 (547)
.|+.-..+.+.... ++.+|.+..+..+-.+ .++-+++.|.++.+.++|++. ..|+. |
T Consensus 134 ~Qv~wa~~~~~~~~--~~k~IL~~Gs~~~l~~-------------~l~~~vYfdQ~g~Lt~rF~I~------~VPav--V 190 (202)
T TIGR02743 134 EQLAWAQQQLPSCP--NVKWILTGGSVNELEK-------------RLDSRIYFDQHGKLTQKFGIK------HVPAR--V 190 (202)
T ss_pred HHHHHHHHhcccCC--CeEEEEeCCCHHHHHH-------------HhCCceEEcCCchHhhccCce------eeceE--E
Confidence 45555554333221 4778887765433322 455677888889999999998 48884 4
Q ss_pred cCCCcEEEEE
Q psy224 482 DDKQNLRQIT 491 (547)
Q Consensus 482 d~~G~v~~~~ 491 (547)
-.+|+.....
T Consensus 191 ~q~g~~l~I~ 200 (202)
T TIGR02743 191 SQEGLRLRIQ 200 (202)
T ss_pred EecCCEEEEE
Confidence 4677776543
No 429
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=25.19 E-value=75 Score=32.33 Aligned_cols=13 Identities=46% Similarity=0.871 Sum_probs=11.5
Q ss_pred EEEEEeCCceeEE
Q psy224 6 VLGIDIGTTSVKV 18 (547)
Q Consensus 6 ~lgIDiGTtsiK~ 18 (547)
.+|||+||++++.
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 5899999999973
No 430
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=25.11 E-value=2.6e+02 Score=29.36 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.5
Q ss_pred CCCceEEEEEeCCceeEEEEEecCC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g 25 (547)
|+|+.+|.|..|+||+|..|||.+.
T Consensus 1 ~~~m~iLvlN~GSSSlKf~lf~~~~ 25 (404)
T TIGR00016 1 MKSMKILVINAGSSSLKFALFDYTN 25 (404)
T ss_pred CCCCeEEEEECChHhheEEEEecCC
Confidence 6666699999999999999999653
No 431
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=23.92 E-value=98 Score=28.13 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH 429 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~ 429 (547)
|.+|| -.-||.|-...+.|.++.+++.+-.++..-++..+.
T Consensus 2 i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 56666 999999999999999999999544455555554443
No 432
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=23.90 E-value=2.5e+02 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.7
Q ss_pred EEEEEeCCceeEEEEEecCCCeeec
Q psy224 6 VLGIDIGTTSVKVCLIDANTREELS 30 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~~l~ 30 (547)
+|.|..|+||+|++||+.++++ +.
T Consensus 2 il~in~Gsts~k~alf~~~~~~-~~ 25 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPL-FE 25 (351)
T ss_pred EEEEecCchhheEEEEeCCCce-ee
Confidence 7999999999999999999986 44
No 433
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=23.73 E-value=54 Score=33.21 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.3
Q ss_pred EEEEEeCCceeEEEEE
Q psy224 6 VLGIDIGTTSVKVCLI 21 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~ 21 (547)
.+|||+||+++|+...
T Consensus 10 ~vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 10 DIGIDLGTANTLVYVK 25 (335)
T ss_pred ceEEEcCCCcEEEEEC
Confidence 3999999999999875
No 434
>PRK12379 propionate/acetate kinase; Provisional
Probab=23.51 E-value=81 Score=32.86 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchhhcH-HHHHHHHHHh
Q psy224 290 VALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLTRNH-ILQHYIERIY 338 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~k~~-~~~q~~Ad~l 338 (547)
+=++|..+|.++..+-.+ .... +++-|+.+||. ..|. .+++.+.+-+
T Consensus 294 ~lA~d~f~yri~k~IGa~-~a~L~~vDaIVFTGGI-Gen~~~vR~~i~~~L 342 (396)
T PRK12379 294 QLAIKTFVHRIARHIAGH-AASLHRLDGIIFTGGI-GENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECCcc-ccCcHHHHHHHHhhh
Confidence 347889999999888752 2333 58999999996 7555 5555555544
No 435
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=1.8e+02 Score=32.26 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.7
Q ss_pred ceEEEEEeCCceeEEEEEecCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g 25 (547)
+.++|||+|||+..+++++..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4789999999999999999774
No 436
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=22.94 E-value=3.9e+02 Score=25.58 Aligned_cols=32 Identities=3% Similarity=-0.035 Sum_probs=21.9
Q ss_pred HHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 408 SDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 408 ~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
.+...+++++|..++..+..+........++.
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~ 53 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILKEL 53 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc
Confidence 33445566679999988888876666666543
No 437
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.89 E-value=1.8e+02 Score=25.75 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+||||-|++++=.++++.+++.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~ 23 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRK 23 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCe
Confidence 7999999999999999876543
No 438
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=22.59 E-value=1.1e+02 Score=26.58 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=22.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKD 35 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~ 35 (547)
..++|||=|||.-- +++|.+|++ +...+.+
T Consensus 32 ~lIVGiDPG~ttgi-AildL~G~~-l~l~S~R 61 (138)
T PF04312_consen 32 YLIVGIDPGTTTGI-AILDLDGEL-LDLKSSR 61 (138)
T ss_pred CEEEEECCCceeEE-EEEecCCcE-EEEEeec
Confidence 47899999998654 457999998 6555433
No 439
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=22.51 E-value=2.3e+02 Score=30.12 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=40.0
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
+.+++.+++|...++... ++ -..|...+...++..+++.+.||-|+-|..+
T Consensus 287 ~~v~l~~LRg~~RvvIvA-G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 287 RIVELVQLRDITRPVILA-GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred CEEeHHHhcCcceEEEEE-CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 689999999965444443 32 3677888888999999999999999988775
No 440
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=22.36 E-value=61 Score=32.81 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=13.1
Q ss_pred EEEEEeCCceeEEEE
Q psy224 6 VLGIDIGTTSVKVCL 20 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l 20 (547)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 589999999999853
No 441
>PRK12440 acetate kinase; Reviewed
Probab=22.25 E-value=2.9e+02 Score=28.92 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=22.9
Q ss_pred CCCceEEEEEeCCceeEEEEEecCC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g 25 (547)
|+.+++|.|..|+||+|..|||.+.
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~ 25 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVT 25 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCC
Confidence 8889999999999999999999643
No 442
>PLN02666 5-oxoprolinase
Probab=21.93 E-value=97 Score=37.61 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--C--cEEEeeCCchhhcHHHHHHHHHHhCCc-eEEecchhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG--I--NRIIGIGSCLTRNHILQHYIERIYGLQ-LIVEQDQAMRD 352 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~--~~I~~~GG~~~k~~~~~q~~Ad~l~~~-v~~~~~~~~~~ 352 (547)
+.++...++++-..-.+...+.. ...+.| + -.+++.||+ -+...-.+|+.++++ |.++..+....
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~-i~~~~G~dpr~~~l~afGGa---gp~ha~~lA~~lgi~~vivP~~~gv~s 524 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQ-LTEMKGYETANHALACFGGA---GPQHACAIARALGMSEVFVHRYCGILS 524 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCceEEEecCc---HHHHHHHHHHHcCCCEEEeCCCccHHH
Confidence 55566666666655555555553 122344 3 367777775 466677899999999 77776655433
No 443
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.88 E-value=1.8e+02 Score=30.63 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|- .+|||+|+..-.-|++ +|+..-.|..+.
T Consensus 4 V~vys-~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~ 36 (410)
T PRK12759 4 VRIYT-KTNCPFCDLAKSWFGA-------NDIPFTQISLDD 36 (410)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH-------CCCCeEEEECCC
Confidence 55666 9999999877555544 466555555553
No 444
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=21.75 E-value=4.7e+02 Score=24.30 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=23.3
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhCC-ceEEecchhhhh
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYGL-QLIVEQDQAMRD 352 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~~-~v~~~~~~~~~~ 352 (547)
++.|++.++| .--+ .+++++.|+. ++..........
T Consensus 30 PDvIiaiaRG-G~~p--ariLsd~L~~~~l~~i~v~~y~~ 66 (192)
T COG2236 30 PDVIVAIARG-GLIP--ARILSDFLGVKPLYSIKVEHYDE 66 (192)
T ss_pred CCEEEEEcCC-ceeh--HHHHHHHhCCCceEEEEEEEehh
Confidence 6666555444 3333 6789999987 777766665543
No 445
>PRK12359 flavodoxin FldB; Provisional
Probab=21.58 E-value=6.1e+02 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=16.1
Q ss_pred EEeeCCchhhcHHHHHHHHHHhCCc
Q psy224 317 IIGIGSCLTRNHILQHYIERIYGLQ 341 (547)
Q Consensus 317 I~~~GG~~~k~~~~~q~~Ad~l~~~ 341 (547)
++.+..| ..+...+.+++.++..
T Consensus 6 ~Y~S~TG--NTe~vAe~I~~~lg~~ 28 (172)
T PRK12359 6 FYGSSTC--YTEMAAEKIRDIIGEE 28 (172)
T ss_pred EEECCCC--HHHHHHHHHHHHhCCC
Confidence 4566665 7777788888877754
No 446
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=21.56 E-value=2.2e+02 Score=25.11 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=32.7
Q ss_pred CceEEEEEeCCce-----eEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCch
Q psy224 3 SQVVLGIDIGTTS-----VKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKD 72 (547)
Q Consensus 3 ~~~~lgIDiGTts-----iK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r 72 (547)
|..+|.||+.||+ +--++++ ++..++.+.....+. - ....-...+.+.++..|...|-.
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~k~---------K-s~~ER~k~ias~Lk~ii~~~d~~ 64 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKHKS---------K-SFFERAKSIASELKTIIQKYDLK 64 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecCcc---------c-CHHHHHHHHHHHHHHHHHHhCCC
Confidence 3468999999998 6667776 444423333222211 0 11222344566677777766554
No 447
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.24 E-value=4.4e+02 Score=25.52 Aligned_cols=30 Identities=0% Similarity=-0.065 Sum_probs=21.2
Q ss_pred HHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 410 RAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 410 ~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
...+++++|+.|+..+.-+......+.++.
T Consensus 27 ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 27 TLARLRERDITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 344456679999888888877777666654
No 448
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.16 E-value=2.1e+02 Score=27.91 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
-.|.||+|++.+-++++|++ ++ .+...+.+
T Consensus 228 palvVd~GngHttaalvded-RI-~gv~EHHT 257 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RI-VGVYEHHT 257 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eE-EEEeeccc
Confidence 35789999999999999998 76 55444333
No 449
>PRK13329 pantothenate kinase; Reviewed
Probab=20.98 E-value=75 Score=30.90 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCceeEEEEEec---CCCeeeccccccc
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDA---NTREELSSESKDT 36 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~---~g~~~l~~~~~~~ 36 (547)
|+ +|-||+|-|.+|..+++. .++. +......+
T Consensus 1 ~m---~LliD~GNTriKw~~~~~~~~~~~~-~~~~~~~~ 35 (249)
T PRK13329 1 MT---FLAIDVGNTRLKWGLYDAAQPGAAL-LAHGAEFL 35 (249)
T ss_pred CC---EEEEEcCcchheeeEecccccCCcc-cccchhhH
No 450
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=20.46 E-value=3.5e+02 Score=26.24 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCC--cEEEeeCCchhhcHHHHHHH-----HHHhCCceEEecchhhhh
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSGI--NRIIGIGSCLTRNHILQHYI-----ERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g~--~~I~~~GG~~~k~~~~~q~~-----Ad~l~~~v~~~~~~~~~~ 352 (547)
.....+++..+..+...+.. .+++.+. ..|+++||- .+|..+.+.+ ......++.++..++..+
T Consensus 193 ~~a~~Il~~a~~~la~~i~~-~~~~~~~~~~~v~l~GGv-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 263 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKA-VLKRLGPEKEPVVLSGGV-FKNSPLVKALRDALKEKLPKVPIIIPVEPQYDP 263 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTCTCCCCSEEEESGG-GGCHHHHHHHGGGS-HHHHCCTCECECCGSSHH
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHhcCCCCCeEEEECCc-cCchHHHHHHHHHHHHhcCCCceEECCCCCccH
Confidence 34445555555555555543 2333332 239999995 8997766655 444555556655555444
No 451
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.32 E-value=2.6e+02 Score=24.29 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
..|+++|-|. -.|-|.|...=.-|.+..++.++ =..++.+..+.
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~ 62 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDE 62 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEccc
Confidence 4689999999 89999999887778888887763 24566666554
No 452
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=20.04 E-value=2.3e+02 Score=26.99 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=62.1
Q ss_pred cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhhhhccCCCCCCeeeccccCCceeeEeccC--CCCCeEEEEEE
Q psy224 315 NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQ--YKGQYVVLFFY 392 (547)
Q Consensus 315 ~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a~~~~g~~~p~~~l~~~~~G~~~~~~l~~--~~gk~~ll~f~ 392 (547)
+++.++|.| ..-..-.+. +...+.+....+..+. +--...||+.++| .+|+ +-.+.+ -+|.++||+-+
T Consensus 53 ~~v~vvG~g-P~l~e~~~~----~~~~~vi~AdgA~~~l--~~~gi~pDiiVTD-lDgd--~e~~~~~~~~g~i~VVHAH 122 (232)
T COG1634 53 REVAVVGAG-PSLEEEIKG----LSSEVVIAADGAVSAL--LERGIRPDIIVTD-LDGD--PEDLLSCTAKGSIVVVHAH 122 (232)
T ss_pred CEEEEECCC-CcHhhhhcc----cccceEEeccHHHHHH--HHcCCCCcEEEec-CCCC--HHHHHHhhccCCEEEEEec
Confidence 789999987 332222222 3344555555444321 1223679999999 9995 333333 37777777776
Q ss_pred eCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH--HHHHhCCc
Q psy224 393 PLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS--IARSYGVL 467 (547)
Q Consensus 393 ~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~--~~~~~~v~ 467 (547)
+.. +..+.+.... ...+++-+...|.. . -.+|-.+.|-|.. ++..+|..
T Consensus 123 -GDN-------i~~i~~~~~~----~~~vigTtQ~~P~~------~--------v~NfgGFTDGDRAa~LA~~lgA~ 173 (232)
T COG1634 123 -GDN-------IWRIPKVVPV----LDRVIGTTQVRPFD------R--------VYNFGGFTDGDRAAFLAYYLGAE 173 (232)
T ss_pred -CcC-------HHHhhccccc----cceeecccccCCCc------c--------eeccCCCCCchHHHHHHHHhCCC
Confidence 432 2222222222 22455543333311 0 4677778888854 45556654
No 453
>KOG1386|consensus
Probab=20.01 E-value=2e+02 Score=30.73 Aligned_cols=69 Identities=7% Similarity=-0.040 Sum_probs=46.9
Q ss_pred CceEEEEEeCCceeEEEEEe---cCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCchhh
Q psy224 3 SQVVLGIDIGTTSVKVCLID---ANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKDHL 74 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d---~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r~~ 74 (547)
-+|=+.||.|+|..|.-|+- ++|+.+.......+.... ..|.-.....+|+..-..+++++.|...+-+
T Consensus 8 ~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k---~~PGiSsfa~nP~~a~~~l~pLlefA~~~IP 79 (501)
T KOG1386|consen 8 LKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLK---LGPGISSFADNPEGASVYLTPLLEFAKEHIP 79 (501)
T ss_pred ceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccc---cCCChhhhccChhhhHHHHHHHHHHHHhhCC
Confidence 35779999999999999995 456622444444444322 1122234578999999999999998765543
Done!