Query psy224
Match_columns 547
No_of_seqs 263 out of 2908
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:44:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ll3_A Gluconate kinase; xylul 100.0 4.5E-59 1.5E-63 499.5 21.9 333 1-352 1-431 (504)
2 3ifr_A Carbohydrate kinase, FG 100.0 6.1E-58 2.1E-62 491.2 21.9 333 3-352 6-438 (508)
3 3hz6_A Xylulokinase; xylulose, 100.0 1.9E-57 6.4E-62 487.8 20.8 331 1-352 1-441 (511)
4 3ezw_A Glycerol kinase; glycer 100.0 1.1E-55 3.7E-60 476.0 24.3 332 2-353 2-441 (526)
5 3h3n_X Glycerol kinase; ATP-bi 100.0 3.7E-55 1.2E-59 469.8 25.8 331 1-352 1-441 (506)
6 2p3r_A Glycerol kinase; glycer 100.0 2.5E-55 8.7E-60 471.1 24.5 331 2-352 1-439 (510)
7 4e1j_A Glycerol kinase; struct 100.0 3.7E-55 1.3E-59 470.6 23.4 331 1-352 23-463 (520)
8 3jvp_A Ribulokinase; PSI-II, N 100.0 4.1E-55 1.4E-59 475.8 22.3 341 1-352 1-478 (572)
9 3g25_A Glycerol kinase; IDP007 100.0 1.7E-54 5.7E-59 464.4 25.8 329 3-352 5-442 (501)
10 3i8b_A Xylulose kinase; strain 100.0 2.2E-54 7.5E-59 463.3 19.9 324 1-352 1-462 (515)
11 2itm_A Xylulose kinase, xylulo 100.0 6.3E-54 2.2E-58 458.5 22.6 324 5-350 1-422 (484)
12 2zf5_O Glycerol kinase; hypert 100.0 6.1E-53 2.1E-57 452.1 24.1 328 2-352 1-431 (497)
13 2dpn_A Glycerol kinase; thermu 100.0 1.1E-52 3.6E-57 450.0 24.0 328 3-352 1-436 (495)
14 2w40_A Glycerol kinase, putati 100.0 2E-52 7E-57 448.7 22.5 326 3-352 3-445 (503)
15 4bc3_A Xylulose kinase; transf 100.0 3.1E-53 1.1E-57 457.8 15.0 332 3-352 9-472 (538)
16 3l0q_A Xylulose kinase; xlylul 100.0 6.8E-53 2.3E-57 457.1 16.5 333 1-352 1-480 (554)
17 2d4w_A Glycerol kinase; alpha 100.0 6.9E-52 2.4E-56 444.4 23.7 327 4-352 2-441 (504)
18 3h6e_A Carbohydrate kinase, FG 100.0 3.4E-51 1.1E-55 434.0 18.6 324 3-355 5-429 (482)
19 2uyt_A Rhamnulokinase; rhamnos 100.0 1.7E-46 5.8E-51 402.0 12.9 321 1-346 1-425 (489)
20 3sbc_A Peroxiredoxin TSA1; alp 100.0 6.1E-41 2.1E-45 314.2 18.8 192 356-547 24-215 (216)
21 3tue_A Tryparedoxin peroxidase 100.0 1.6E-38 5.6E-43 298.4 17.2 189 356-544 27-217 (219)
22 3tjj_A Peroxiredoxin-4; thiore 100.0 2.1E-36 7.2E-41 294.5 18.7 192 356-547 63-254 (254)
23 3qpm_A Peroxiredoxin; oxidored 100.0 6.2E-35 2.1E-39 282.4 19.8 191 356-546 49-239 (240)
24 2pn8_A Peroxiredoxin-4; thiore 100.0 3E-34 1E-38 272.5 19.8 192 356-547 20-211 (211)
25 1zye_A Thioredoxin-dependent p 100.0 3.1E-33 1.1E-37 267.3 18.9 192 356-547 28-219 (220)
26 1qmv_A Human thioredoxin perox 100.0 4.5E-33 1.5E-37 261.8 18.3 191 356-547 6-197 (197)
27 2i81_A 2-Cys peroxiredoxin; st 100.0 1.1E-32 3.8E-37 262.1 20.0 189 356-546 22-213 (213)
28 1uul_A Tryparedoxin peroxidase 100.0 1.2E-32 4.1E-37 259.9 19.9 190 356-546 7-198 (202)
29 2c0d_A Thioredoxin peroxidase 100.0 9.9E-33 3.4E-37 263.5 19.1 189 356-546 26-217 (221)
30 1xcc_A 1-Cys peroxiredoxin; un 100.0 5.6E-33 1.9E-37 265.0 13.0 184 356-543 4-199 (220)
31 1prx_A HORF6; peroxiredoxin, h 100.0 1.5E-32 5.1E-37 262.9 15.7 186 355-544 5-203 (224)
32 2v2g_A Peroxiredoxin 6; oxidor 100.0 4.4E-33 1.5E-37 267.3 12.0 185 356-545 4-200 (233)
33 2h01_A 2-Cys peroxiredoxin; th 100.0 7.1E-32 2.4E-36 252.5 18.2 187 357-545 2-191 (192)
34 3ztl_A Thioredoxin peroxidase; 100.0 1.6E-31 5.5E-36 255.8 19.0 181 356-536 41-221 (222)
35 1n8j_A AHPC, alkyl hydroperoxi 100.0 2.2E-31 7.5E-36 247.8 18.2 177 357-537 3-181 (186)
36 3a2v_A Probable peroxiredoxin; 100.0 2.1E-31 7.1E-36 257.2 14.5 183 356-544 6-200 (249)
37 1zof_A Alkyl hydroperoxide-red 100.0 6E-30 2.1E-34 240.6 16.9 185 357-545 3-193 (198)
38 1we0_A Alkyl hydroperoxide red 100.0 1.2E-29 4.2E-34 236.2 17.0 175 357-537 3-182 (187)
39 4g2e_A Peroxiredoxin; redox pr 100.0 4.3E-29 1.5E-33 225.7 12.0 146 356-511 5-156 (157)
40 2bmx_A Alkyl hydroperoxidase C 100.0 4.7E-28 1.6E-32 227.1 18.0 173 356-537 5-190 (195)
41 4gqc_A Thiol peroxidase, perox 100.0 2.2E-29 7.4E-34 229.3 5.8 149 354-512 4-159 (164)
42 3mng_A Peroxiredoxin-5, mitoch 99.9 1.6E-26 5.4E-31 211.7 12.9 146 355-511 15-173 (173)
43 3drn_A Peroxiredoxin, bacterio 99.9 3.6E-26 1.2E-30 207.4 14.7 149 356-516 3-152 (161)
44 3ixr_A Bacterioferritin comigr 99.9 1.1E-25 3.8E-30 207.9 11.8 145 357-512 23-177 (179)
45 3gkn_A Bacterioferritin comigr 99.9 1.8E-25 6.1E-30 203.0 12.8 147 355-512 7-161 (163)
46 1psq_A Probable thiol peroxida 99.9 4.2E-25 1.4E-29 200.8 13.8 144 356-511 17-163 (163)
47 3p7x_A Probable thiol peroxida 99.9 3.4E-25 1.2E-29 202.0 13.2 143 356-511 21-166 (166)
48 1q98_A Thiol peroxidase, TPX; 99.9 6E-25 2.1E-29 200.2 14.5 141 356-508 18-164 (165)
49 3zrd_A Thiol peroxidase; oxido 99.9 1.2E-24 4.3E-29 204.4 15.2 142 356-509 53-200 (200)
50 1tp9_A Peroxiredoxin, PRX D (t 99.9 9.2E-25 3.1E-29 198.3 12.2 142 356-507 5-161 (162)
51 1xvw_A Hypothetical protein RV 99.9 1.7E-24 5.7E-29 195.9 13.7 147 356-512 10-159 (160)
52 3keb_A Probable thiol peroxida 99.9 4.5E-24 1.5E-28 201.4 15.4 142 356-512 23-175 (224)
53 2wfc_A Peroxiredoxin 5, PRDX5; 99.9 2.3E-24 8E-29 196.5 12.6 141 356-507 4-158 (167)
54 2yzh_A Probable thiol peroxida 99.9 2.4E-24 8.1E-29 197.4 12.6 143 356-511 22-170 (171)
55 3uma_A Hypothetical peroxiredo 99.9 1.8E-24 6.3E-29 200.0 11.0 142 356-507 27-183 (184)
56 4f82_A Thioredoxin reductase; 99.9 3E-24 1E-28 194.9 12.0 146 355-508 10-174 (176)
57 3u5r_E Uncharacterized protein 99.9 4.5E-24 1.6E-28 203.5 13.0 158 356-530 33-210 (218)
58 4eo3_A Bacterioferritin comigr 99.9 6.3E-24 2.1E-28 213.6 13.0 158 360-535 3-160 (322)
59 1nm3_A Protein HI0572; hybrid, 99.9 5.5E-24 1.9E-28 206.2 11.7 149 356-512 4-166 (241)
60 2ywi_A Hypothetical conserved 99.9 1.7E-23 5.9E-28 195.8 13.3 157 356-529 19-196 (196)
61 2cvb_A Probable thiol-disulfid 99.9 2.5E-23 8.7E-28 193.4 12.7 154 356-529 8-181 (188)
62 2jsy_A Probable thiol peroxida 99.9 7.7E-23 2.6E-27 186.4 13.9 144 356-512 19-166 (167)
63 2xhf_A Peroxiredoxin 5; oxidor 99.9 2.8E-23 9.6E-28 188.4 10.8 145 355-509 14-170 (171)
64 2pwj_A Mitochondrial peroxired 99.9 4E-23 1.4E-27 189.1 11.9 144 355-507 7-170 (171)
65 2a4v_A Peroxiredoxin DOT5; yea 99.9 1.3E-23 4.5E-28 190.0 8.3 140 356-509 8-150 (159)
66 1xvq_A Thiol peroxidase; thior 99.9 3.6E-22 1.2E-26 183.6 16.0 143 356-512 19-167 (175)
67 1xiy_A Peroxiredoxin, pfaop; a 99.9 1.3E-22 4.4E-27 186.4 12.5 147 357-511 3-180 (182)
68 3fw2_A Thiol-disulfide oxidore 99.9 2E-21 6.9E-26 173.6 15.2 132 356-511 6-146 (150)
69 3ewl_A Uncharacterized conserv 99.9 1.5E-21 5.2E-26 172.5 13.7 132 357-512 3-140 (142)
70 3eyt_A Uncharacterized protein 99.9 5.9E-22 2E-26 178.4 11.2 136 357-512 2-151 (158)
71 3kcm_A Thioredoxin family prot 99.9 2.8E-21 9.5E-26 173.2 15.1 139 356-513 3-143 (154)
72 1xzo_A BSSCO, hypothetical pro 99.9 4E-21 1.4E-25 175.9 16.2 143 357-512 9-171 (174)
73 3lor_A Thiol-disulfide isomera 99.9 7.3E-22 2.5E-26 178.2 11.1 137 356-512 4-154 (160)
74 3eur_A Uncharacterized protein 99.9 2.6E-21 9E-26 171.1 13.2 130 356-509 6-141 (142)
75 3hdc_A Thioredoxin family prot 99.9 3.7E-21 1.3E-25 173.5 13.2 138 355-513 15-152 (158)
76 2b7k_A SCO1 protein; metalloch 99.9 3.7E-21 1.3E-25 180.8 13.7 158 356-525 14-194 (200)
77 2l5o_A Putative thioredoxin; s 99.9 7.1E-21 2.4E-25 170.3 14.9 137 355-512 2-140 (153)
78 2f9s_A Thiol-disulfide oxidore 99.9 5.7E-21 2E-25 170.7 14.1 135 357-512 2-137 (151)
79 2lrt_A Uncharacterized protein 99.8 4.8E-21 1.7E-25 171.7 13.3 132 356-510 10-145 (152)
80 2lrn_A Thiol:disulfide interch 99.8 5.4E-21 1.8E-25 171.2 13.5 119 357-492 5-127 (152)
81 4fo5_A Thioredoxin-like protei 99.8 1.3E-21 4.4E-26 173.4 9.1 119 356-492 8-131 (143)
82 2v1m_A Glutathione peroxidase; 99.8 4.3E-21 1.5E-25 174.7 12.5 131 355-497 5-155 (169)
83 3hcz_A Possible thiol-disulfid 99.8 2.2E-21 7.4E-26 172.4 10.1 135 356-511 6-144 (148)
84 3gl3_A Putative thiol:disulfid 99.8 2.5E-20 8.5E-25 166.5 16.6 137 356-512 4-141 (152)
85 3lwa_A Secreted thiol-disulfid 99.8 1.1E-20 3.7E-25 174.8 14.4 138 357-512 33-180 (183)
86 3kij_A Probable glutathione pe 99.8 8E-21 2.7E-25 175.4 13.4 148 355-514 12-175 (180)
87 3kh7_A Thiol:disulfide interch 99.8 7.5E-21 2.6E-25 174.9 12.6 139 355-512 30-170 (176)
88 2p31_A CL683, glutathione pero 99.8 5.3E-21 1.8E-25 176.7 11.0 135 356-511 24-179 (181)
89 2ggt_A SCO1 protein homolog, m 99.8 3.5E-20 1.2E-24 167.8 16.2 132 360-512 2-160 (164)
90 2f8a_A Glutathione peroxidase 99.8 1.8E-20 6.2E-25 177.0 14.5 136 357-497 22-195 (208)
91 1jfu_A Thiol:disulfide interch 99.8 2.1E-20 7E-25 173.3 14.4 141 357-512 36-179 (186)
92 3raz_A Thioredoxin-related pro 99.8 1.2E-20 4E-25 168.8 12.0 132 360-513 4-140 (151)
93 2hyx_A Protein DIPZ; thioredox 99.8 2.5E-20 8.4E-25 189.1 15.5 161 356-537 52-225 (352)
94 3fkf_A Thiol-disulfide oxidore 99.8 2.6E-20 8.8E-25 165.3 13.8 132 356-511 6-144 (148)
95 2i3y_A Epididymal secretory gl 99.8 1.2E-20 4.1E-25 178.6 12.0 140 357-512 31-210 (215)
96 2gs3_A PHGPX, GPX-4, phospholi 99.8 1.2E-20 4E-25 175.1 11.6 129 356-496 24-173 (185)
97 3dwv_A Glutathione peroxidase- 99.8 7.8E-21 2.7E-25 176.6 10.4 138 357-511 22-181 (187)
98 2obi_A PHGPX, GPX-4, phospholi 99.8 1.2E-20 4E-25 174.7 11.6 139 356-510 22-181 (183)
99 2p5q_A Glutathione peroxidase 99.8 1.5E-20 5.1E-25 171.3 11.5 125 357-496 8-155 (170)
100 3erw_A Sporulation thiol-disul 99.8 3.9E-20 1.3E-24 163.5 13.3 131 356-508 10-144 (145)
101 3or5_A Thiol:disulfide interch 99.8 6.6E-20 2.3E-24 166.0 14.9 140 356-511 9-149 (165)
102 2vup_A Glutathione peroxidase- 99.8 8.1E-21 2.8E-25 176.9 8.9 134 357-511 24-183 (190)
103 3cmi_A Peroxiredoxin HYR1; thi 99.8 8.5E-21 2.9E-25 173.6 8.4 123 357-497 8-156 (171)
104 3me7_A Putative uncharacterize 99.8 7.3E-20 2.5E-24 167.3 14.6 143 357-513 3-162 (170)
105 2r37_A Glutathione peroxidase 99.8 5.1E-20 1.7E-24 173.5 13.9 139 357-511 13-191 (207)
106 3ia1_A THIO-disulfide isomeras 99.8 3.3E-20 1.1E-24 166.2 11.9 134 355-513 5-144 (154)
107 2rli_A SCO2 protein homolog, m 99.8 2.5E-19 8.6E-24 163.4 17.6 137 362-513 7-164 (171)
108 4hde_A SCO1/SENC family lipopr 99.8 2.2E-19 7.4E-24 164.1 16.6 145 357-511 8-168 (170)
109 3ha9_A Uncharacterized thiored 99.8 4E-20 1.4E-24 167.9 11.1 132 356-512 12-163 (165)
110 2b5x_A YKUV protein, TRXY; thi 99.8 9.1E-20 3.1E-24 161.6 12.4 134 357-512 3-144 (148)
111 4evm_A Thioredoxin family prot 99.8 2.8E-19 9.7E-24 155.9 14.2 130 360-511 1-137 (138)
112 1lu4_A Soluble secreted antige 99.8 2.6E-19 9E-24 156.4 12.7 128 360-511 3-134 (136)
113 2k6v_A Putative cytochrome C o 99.8 6.3E-20 2.2E-24 167.5 8.8 141 356-511 11-171 (172)
114 2lja_A Putative thiol-disulfid 99.8 3.2E-19 1.1E-23 159.3 12.9 135 357-512 5-142 (152)
115 2ls5_A Uncharacterized protein 99.7 4.2E-21 1.4E-25 173.2 0.0 139 357-512 9-150 (159)
116 1zzo_A RV1677; thioredoxin fol 99.8 5.9E-19 2E-23 153.9 13.7 130 358-511 2-133 (136)
117 2b1k_A Thiol:disulfide interch 99.8 1E-18 3.4E-23 159.0 10.8 120 356-496 23-147 (168)
118 1i5g_A Tryparedoxin II; electr 99.8 7.9E-19 2.7E-23 155.4 9.7 119 357-491 3-126 (144)
119 1o8x_A Tryparedoxin, TRYX, TXN 99.8 1.9E-18 6.5E-23 153.4 10.3 118 357-491 4-126 (146)
120 2h30_A Thioredoxin, peptide me 99.8 1.2E-18 4E-23 157.7 8.4 127 365-512 22-155 (164)
121 1kng_A Thiol:disulfide interch 99.7 1.8E-18 6.2E-23 155.0 8.6 133 356-510 9-149 (156)
122 1o73_A Tryparedoxin; electron 99.7 8.3E-18 2.8E-22 148.6 9.8 118 357-491 4-126 (144)
123 3s9f_A Tryparedoxin; thioredox 99.7 3.3E-18 1.1E-22 155.4 5.0 119 356-491 23-146 (165)
124 2lus_A Thioredoxion; CR-Trp16, 99.5 1.7E-18 5.9E-23 152.7 0.0 115 360-491 3-125 (143)
125 2l57_A Uncharacterized protein 99.4 1.2E-12 4E-17 112.7 9.2 112 360-512 5-116 (126)
126 4h86_A Peroxiredoxin type-2; o 99.4 1.7E-12 5.7E-17 118.3 10.3 148 356-507 27-198 (199)
127 1hux_A Activator of (R)-2-hydr 99.3 7.8E-12 2.7E-16 122.4 12.9 109 219-350 134-244 (270)
128 2fwh_A Thiol:disulfide interch 99.3 5E-13 1.7E-17 116.5 2.3 116 357-512 6-127 (134)
129 2ju5_A Thioredoxin disulfide i 99.3 2.2E-12 7.4E-17 115.4 5.2 111 375-512 38-151 (154)
130 3hxs_A Thioredoxin, TRXP; elec 99.2 1.4E-10 4.8E-15 101.5 12.0 96 375-511 42-137 (141)
131 3f9u_A Putative exported cytoc 99.2 2.9E-12 1E-16 116.6 1.0 122 376-511 39-164 (172)
132 3fk8_A Disulphide isomerase; A 99.1 1.7E-10 6E-15 99.9 10.6 101 379-512 24-132 (133)
133 3ul3_B Thioredoxin, thioredoxi 99.1 1.5E-10 5.2E-15 99.7 9.7 106 358-509 21-126 (128)
134 2kuc_A Putative disulphide-iso 99.1 2.3E-10 7.8E-15 98.6 8.0 99 376-512 19-120 (130)
135 3zzx_A Thioredoxin; oxidoreduc 99.1 6.9E-10 2.4E-14 92.1 9.7 89 379-510 15-103 (105)
136 2pu9_C TRX-F, thioredoxin F-ty 99.0 9.8E-10 3.4E-14 91.8 10.5 90 380-511 20-109 (111)
137 2voc_A Thioredoxin; electron t 99.0 1.4E-09 4.7E-14 91.2 11.1 89 383-512 16-104 (112)
138 3qfa_C Thioredoxin; protein-pr 99.0 1.1E-09 3.8E-14 92.5 8.5 89 379-510 26-114 (116)
139 2l5l_A Thioredoxin; structural 99.0 3E-09 1E-13 92.5 10.6 89 383-512 37-125 (136)
140 3die_A Thioredoxin, TRX; elect 99.0 3.9E-09 1.4E-13 87.0 10.8 87 383-510 18-104 (106)
141 3d6i_A Monothiol glutaredoxin- 99.0 4.7E-09 1.6E-13 87.7 11.4 88 383-511 20-107 (112)
142 3p2a_A Thioredoxin 2, putative 99.0 2E-09 6.9E-14 95.1 9.5 112 357-512 31-142 (148)
143 3gix_A Thioredoxin-like protei 99.0 1.4E-09 4.9E-14 96.3 8.4 94 383-516 22-124 (149)
144 1z6n_A Hypothetical protein PA 98.9 7.5E-10 2.6E-14 100.0 6.2 83 378-495 48-130 (167)
145 1thx_A Thioredoxin, thioredoxi 98.9 7.8E-09 2.7E-13 86.5 12.1 88 383-511 24-111 (115)
146 1dby_A Chloroplast thioredoxin 98.9 6.2E-09 2.1E-13 86.0 11.3 87 383-510 18-104 (107)
147 3f3q_A Thioredoxin-1; His TAG, 98.9 3.8E-09 1.3E-13 88.0 9.9 85 383-510 23-107 (109)
148 1xfl_A Thioredoxin H1; AT3G510 98.9 3.5E-09 1.2E-13 90.6 9.9 87 382-511 36-122 (124)
149 1w4v_A Thioredoxin, mitochondr 98.9 5E-09 1.7E-13 88.8 10.7 88 383-511 30-117 (119)
150 1t00_A Thioredoxin, TRX; redox 98.9 4.7E-09 1.6E-13 87.7 10.1 88 383-511 22-109 (112)
151 1nsw_A Thioredoxin, TRX; therm 98.9 3.5E-09 1.2E-13 87.3 9.2 87 383-510 16-102 (105)
152 1faa_A Thioredoxin F; electron 98.9 4.2E-09 1.5E-13 89.8 9.7 89 381-511 34-122 (124)
153 3tco_A Thioredoxin (TRXA-1); d 98.9 7.3E-09 2.5E-13 85.7 10.8 87 383-510 20-106 (109)
154 2i4a_A Thioredoxin; acidophIle 98.9 8.4E-09 2.9E-13 85.1 11.0 88 383-511 19-106 (107)
155 2trx_A Thioredoxin; electron t 98.9 6.6E-09 2.3E-13 86.0 10.3 88 383-511 19-106 (108)
156 3cxg_A Putative thioredoxin; m 98.9 2.2E-09 7.5E-14 93.1 7.2 91 378-511 34-127 (133)
157 2e0q_A Thioredoxin; electron t 98.9 1.1E-08 3.6E-13 83.8 10.4 87 383-511 15-101 (104)
158 4euy_A Uncharacterized protein 98.9 4.5E-09 1.5E-13 86.8 8.2 87 383-511 17-103 (105)
159 2j23_A Thioredoxin; immune pro 98.9 7.9E-09 2.7E-13 87.9 9.8 88 383-511 32-119 (121)
160 1ep7_A Thioredoxin CH1, H-type 98.9 1.1E-08 3.8E-13 85.3 10.5 86 384-511 24-109 (112)
161 3hz4_A Thioredoxin; NYSGXRC, P 98.9 1.3E-08 4.4E-13 89.0 11.4 107 383-530 23-131 (140)
162 2dml_A Protein disulfide-isome 98.9 4.2E-09 1.4E-13 90.6 8.0 89 383-511 34-122 (130)
163 2o8v_B Thioredoxin 1; disulfid 98.9 4.5E-09 1.5E-13 90.5 7.9 88 383-511 39-126 (128)
164 1x5d_A Protein disulfide-isome 98.9 1.3E-08 4.5E-13 87.6 11.0 90 383-512 24-116 (133)
165 2l6c_A Thioredoxin; oxidoreduc 98.9 9.4E-09 3.2E-13 85.8 9.4 88 383-512 18-105 (110)
166 2ppt_A Thioredoxin-2; thiredox 98.8 1.4E-08 4.7E-13 90.6 11.0 88 383-511 63-150 (155)
167 2vlu_A Thioredoxin, thioredoxi 98.8 1.3E-08 4.4E-13 86.4 10.2 86 383-511 33-118 (122)
168 2f51_A Thioredoxin; electron t 98.8 6.6E-09 2.2E-13 88.0 8.3 89 383-513 22-113 (118)
169 1qgv_A Spliceosomal protein U5 98.8 7.4E-09 2.5E-13 90.9 8.7 96 383-515 22-123 (142)
170 3gnj_A Thioredoxin domain prot 98.8 1.9E-08 6.7E-13 83.5 10.7 88 383-511 21-108 (111)
171 1x5e_A Thioredoxin domain cont 98.8 2.4E-08 8.4E-13 85.3 11.6 87 385-512 23-109 (126)
172 2xc2_A Thioredoxinn; oxidoredu 98.8 7.5E-09 2.6E-13 87.3 8.2 88 379-510 28-115 (117)
173 3m9j_A Thioredoxin; oxidoreduc 98.8 1.4E-08 4.6E-13 83.6 9.6 88 380-510 16-103 (105)
174 2oe3_A Thioredoxin-3; electron 98.8 1.3E-08 4.5E-13 85.6 9.6 85 383-510 29-113 (114)
175 2av4_A Thioredoxin-like protei 98.8 8.7E-09 3E-13 90.3 8.6 103 383-525 40-154 (160)
176 3d22_A TRXH4, thioredoxin H-ty 98.8 4.9E-09 1.7E-13 91.4 7.1 93 377-512 39-131 (139)
177 2vim_A Thioredoxin, TRX; thior 98.8 1.9E-08 6.4E-13 82.5 10.2 88 380-510 15-102 (104)
178 2yzu_A Thioredoxin; redox prot 98.8 2.4E-08 8.1E-13 82.5 10.6 88 383-511 17-104 (109)
179 2wz9_A Glutaredoxin-3; protein 98.8 1.7E-08 5.9E-13 89.7 10.3 87 383-512 31-117 (153)
180 1sen_A Thioredoxin-like protei 98.8 2.5E-10 8.7E-15 103.0 -1.8 105 376-513 38-148 (164)
181 1xwb_A Thioredoxin; dimerizati 98.8 3E-08 1E-12 81.6 10.8 88 381-510 17-104 (106)
182 1gh2_A Thioredoxin-like protei 98.8 2.2E-08 7.4E-13 82.9 9.9 85 383-510 20-104 (107)
183 1fb6_A Thioredoxin M; electron 98.8 2.8E-08 9.5E-13 81.6 10.4 87 383-510 17-103 (105)
184 1r26_A Thioredoxin; redox-acti 98.8 2.1E-08 7.3E-13 85.8 9.7 86 383-511 36-121 (125)
185 3emx_A Thioredoxin; structural 98.8 8.5E-09 2.9E-13 89.6 7.3 95 383-512 31-125 (135)
186 2dj0_A Thioredoxin-related tra 98.8 2.1E-08 7.4E-13 87.1 9.7 88 380-497 22-109 (137)
187 2dj1_A Protein disulfide-isome 98.8 1.2E-08 4.2E-13 88.8 8.0 89 383-512 33-123 (140)
188 2vm1_A Thioredoxin, thioredoxi 98.8 2.8E-08 9.5E-13 83.6 9.8 87 383-512 27-113 (118)
189 3qou_A Protein YBBN; thioredox 98.8 2.2E-08 7.5E-13 98.7 10.6 89 380-509 22-110 (287)
190 1ti3_A Thioredoxin H, PTTRXH1; 98.8 2.3E-08 7.7E-13 83.4 8.9 74 382-493 24-97 (113)
191 2lst_A Thioredoxin; structural 98.2 9.7E-10 3.3E-14 94.7 0.0 99 375-511 10-114 (130)
192 1zma_A Bacterocin transport ac 98.7 2E-08 6.8E-13 84.8 8.1 89 383-508 28-116 (118)
193 3h79_A Thioredoxin-like protei 98.7 4.7E-08 1.6E-12 83.7 9.9 90 383-511 32-126 (127)
194 1syr_A Thioredoxin; SGPP, stru 98.7 6.5E-08 2.2E-12 80.8 10.4 86 383-511 25-110 (112)
195 3uvt_A Thioredoxin domain-cont 98.7 3.4E-08 1.2E-12 82.0 8.6 88 383-510 20-109 (111)
196 3aps_A DNAJ homolog subfamily 98.7 2.1E-08 7.1E-13 85.1 7.3 93 383-512 20-112 (122)
197 2dj3_A Protein disulfide-isome 98.7 1.1E-08 3.8E-13 88.3 5.6 92 383-512 24-117 (133)
198 2i1u_A Thioredoxin, TRX, MPT46 98.7 6.4E-08 2.2E-12 81.8 9.2 87 383-510 29-115 (121)
199 3dxb_A Thioredoxin N-terminall 98.7 5.6E-08 1.9E-12 92.0 9.1 89 383-512 29-117 (222)
200 1oaz_A Thioredoxin 1; immune s 98.7 3.8E-08 1.3E-12 84.0 7.1 87 383-510 20-120 (123)
201 3apq_A DNAJ homolog subfamily 98.7 1.9E-08 6.5E-13 94.4 5.7 106 363-512 96-201 (210)
202 2qgv_A Hydrogenase-1 operon pr 98.6 4.7E-08 1.6E-12 84.5 7.4 89 383-511 33-123 (140)
203 1v98_A Thioredoxin; oxidoreduc 98.6 1.8E-07 6E-12 81.5 11.0 88 383-511 49-136 (140)
204 2djj_A PDI, protein disulfide- 98.6 1.1E-07 3.7E-12 80.4 9.3 87 383-511 24-115 (121)
205 2qsi_A Putative hydrogenase ex 98.6 1.3E-07 4.4E-12 81.5 9.6 85 385-510 34-120 (137)
206 3ph9_A Anterior gradient prote 98.6 8.6E-09 2.9E-13 91.2 1.3 96 380-511 40-143 (151)
207 2dbc_A PDCL2, unnamed protein 98.6 9.4E-08 3.2E-12 82.9 7.9 89 383-512 29-120 (135)
208 1mek_A Protein disulfide isome 98.6 2.6E-08 9.1E-13 83.8 3.9 89 383-511 23-115 (120)
209 2yj7_A LPBCA thioredoxin; oxid 97.9 9.7E-09 3.3E-13 84.3 0.0 77 383-496 18-94 (106)
210 1nho_A Probable thioredoxin; b 98.5 1.9E-07 6.5E-12 73.4 7.4 80 386-510 3-82 (85)
211 3idv_A Protein disulfide-isome 98.5 3.6E-07 1.2E-11 87.2 10.3 90 382-512 30-121 (241)
212 1a8l_A Protein disulfide oxido 98.5 8.3E-07 2.8E-11 83.9 12.5 88 383-510 133-223 (226)
213 1wou_A Thioredoxin -related pr 98.5 1.2E-07 4.1E-12 80.7 6.0 79 380-487 20-105 (123)
214 3ira_A Conserved protein; meth 98.5 6E-07 2E-11 81.0 10.8 106 376-510 31-144 (173)
215 3q6o_A Sulfhydryl oxidase 1; p 98.5 5.6E-07 1.9E-11 86.4 11.4 93 383-512 29-126 (244)
216 1fo5_A Thioredoxin; disulfide 98.5 1.9E-07 6.5E-12 73.4 6.7 81 385-510 3-83 (85)
217 3t58_A Sulfhydryl oxidase 1; o 98.5 6.6E-07 2.2E-11 95.3 12.2 93 383-512 29-126 (519)
218 1wmj_A Thioredoxin H-type; str 98.4 3.2E-08 1.1E-12 84.8 1.0 74 382-493 34-107 (130)
219 2es7_A Q8ZP25_salty, putative 98.4 2.1E-07 7.1E-12 81.5 5.4 86 385-512 35-124 (142)
220 3h1q_A Ethanolamine utilizatio 98.4 3.9E-06 1.3E-10 81.7 15.0 63 284-352 201-264 (272)
221 2hls_A Protein disulfide oxido 98.4 2E-06 6.9E-11 82.5 12.0 88 381-512 135-225 (243)
222 1a0r_P Phosducin, MEKA, PP33; 98.3 3.9E-07 1.3E-11 87.1 5.7 91 383-512 132-225 (245)
223 3ed3_A Protein disulfide-isome 98.3 1.7E-06 5.8E-11 85.6 10.3 90 383-511 34-140 (298)
224 3iv4_A Putative oxidoreductase 98.3 6.6E-07 2.2E-11 73.9 5.6 75 384-492 24-98 (112)
225 3kp8_A Vkorc1/thioredoxin doma 98.3 6.5E-08 2.2E-12 80.2 -1.2 87 376-508 4-90 (106)
226 3evi_A Phosducin-like protein 98.3 1.8E-06 6.3E-11 72.8 7.7 87 384-511 23-112 (118)
227 1ilo_A Conserved hypothetical 98.3 4E-06 1.4E-10 64.4 9.0 62 387-490 2-63 (77)
228 3idv_A Protein disulfide-isome 98.2 6.5E-06 2.2E-10 78.3 10.8 89 383-512 146-236 (241)
229 2trc_P Phosducin, MEKA, PP33; 98.1 2.3E-06 7.9E-11 80.5 6.0 91 383-512 119-212 (217)
230 1sji_A Calsequestrin 2, calseq 98.1 7.5E-06 2.6E-10 82.9 10.1 87 383-511 27-120 (350)
231 4ehu_A Activator of 2-hydroxyi 98.1 1.4E-05 4.7E-10 78.1 11.7 65 284-353 181-245 (276)
232 2r2j_A Thioredoxin domain-cont 98.1 8.5E-06 2.9E-10 83.6 10.5 90 383-512 21-116 (382)
233 2dlx_A UBX domain-containing p 98.1 4E-05 1.4E-09 67.6 12.7 91 383-512 41-135 (153)
234 3ga4_A Dolichyl-diphosphooligo 98.1 1.7E-05 5.9E-10 71.6 10.3 106 383-526 36-165 (178)
235 3dml_A Putative uncharacterize 98.0 2.1E-06 7.3E-11 71.7 3.4 92 383-512 17-109 (116)
236 2b5e_A Protein disulfide-isome 98.0 1.1E-05 3.7E-10 86.0 9.3 90 383-512 30-121 (504)
237 3f8u_A Protein disulfide-isome 98.0 3.8E-06 1.3E-10 89.0 5.5 90 383-512 369-460 (481)
238 2ywm_A Glutaredoxin-like prote 98.0 2.3E-05 8E-10 74.0 10.5 84 383-511 135-218 (229)
239 3f8u_A Protein disulfide-isome 98.0 1.3E-05 4.5E-10 84.8 9.4 89 383-512 20-108 (481)
240 3qcp_A QSOX from trypanosoma b 98.0 4.7E-06 1.6E-10 86.6 5.6 69 383-486 41-116 (470)
241 3apo_A DNAJ homolog subfamily 97.9 3E-05 1E-09 87.1 10.2 92 379-512 450-541 (780)
242 1eej_A Thiol:disulfide interch 97.9 2E-05 7E-10 73.9 7.4 111 377-511 79-209 (216)
243 3uem_A Protein disulfide-isome 97.9 1.5E-05 5.1E-10 81.0 6.3 87 383-510 266-354 (361)
244 3apo_A DNAJ homolog subfamily 97.8 1.4E-05 4.7E-10 89.9 6.4 93 383-512 674-766 (780)
245 3gyk_A 27KDA outer membrane pr 97.8 2.9E-05 9.8E-10 70.1 6.9 47 376-425 14-60 (175)
246 3us3_A Calsequestrin-1; calciu 97.7 0.00016 5.5E-09 73.6 11.5 88 383-511 29-122 (367)
247 3hd5_A Thiol:disulfide interch 97.6 8E-05 2.7E-09 68.5 6.4 43 383-427 24-66 (195)
248 1v58_A Thiol:disulfide interch 97.5 0.00022 7.4E-09 68.1 8.3 120 377-511 90-231 (241)
249 2b5e_A Protein disulfide-isome 97.5 7.6E-05 2.6E-09 79.4 5.4 87 383-511 375-465 (504)
250 3h93_A Thiol:disulfide interch 97.4 0.00011 3.8E-09 67.3 5.1 42 383-426 24-65 (192)
251 1a8l_A Protein disulfide oxido 97.3 0.00099 3.4E-08 62.4 10.6 90 381-507 19-110 (226)
252 2k8s_A Thioredoxin; dimer, str 97.3 0.0004 1.4E-08 53.6 5.9 66 387-490 3-68 (80)
253 2e7p_A Glutaredoxin; thioredox 97.2 8.2E-05 2.8E-09 61.9 1.3 70 383-491 18-87 (116)
254 2znm_A Thiol:disulfide interch 97.2 0.00067 2.3E-08 62.1 7.6 42 383-426 21-62 (195)
255 2djk_A PDI, protein disulfide- 97.2 0.00054 1.9E-08 58.6 6.5 92 383-512 22-114 (133)
256 1t3b_A Thiol:disulfide interch 97.2 0.0006 2.1E-08 63.5 6.9 105 383-511 85-209 (211)
257 1ttz_A Conserved hypothetical 97.1 0.00078 2.7E-08 53.1 6.0 73 388-511 3-75 (87)
258 2fgx_A Putative thioredoxin; N 97.1 0.0008 2.7E-08 55.2 6.1 63 386-488 30-92 (107)
259 2rem_A Disulfide oxidoreductas 97.1 0.0013 4.4E-08 60.0 8.3 42 383-426 24-65 (193)
260 1hyu_A AHPF, alkyl hydroperoxi 97.0 0.0018 6.1E-08 69.0 9.8 83 383-511 116-198 (521)
261 2ywm_A Glutaredoxin-like prote 97.0 0.0017 5.8E-08 60.9 8.1 78 382-495 19-101 (229)
262 1zc6_A Probable N-acetylglucos 96.9 0.0013 4.5E-08 64.9 7.3 53 4-69 11-63 (305)
263 1z6m_A Conserved hypothetical 96.9 0.0055 1.9E-07 54.8 10.5 50 376-426 19-69 (175)
264 1ego_A Glutaredoxin; electron 96.8 0.0024 8.3E-08 49.4 6.3 36 388-426 3-38 (85)
265 2e2o_A Hexokinase; acetate and 96.7 0.0015 5.1E-08 64.2 5.9 52 5-68 3-54 (299)
266 2ch5_A NAGK protein; transfera 96.7 0.002 7E-08 64.7 6.4 57 1-69 3-59 (347)
267 2qc7_A ERP31, ERP28, endoplasm 96.6 0.0066 2.3E-07 57.5 9.4 92 383-511 21-117 (240)
268 1wjk_A C330018D20RIK protein; 96.6 0.0046 1.6E-07 49.9 6.6 80 384-511 15-94 (100)
269 3vgl_A Glucokinase; ROK family 96.5 0.0032 1.1E-07 62.6 6.7 51 3-69 1-51 (321)
270 2qm1_A Glucokinase; alpha-beta 96.0 0.0064 2.2E-07 60.3 5.5 52 3-68 5-56 (326)
271 3uem_A Protein disulfide-isome 95.8 0.032 1.1E-06 56.0 10.1 108 385-526 136-247 (361)
272 3kp9_A Vkorc1/thioredoxin doma 95.7 0.0041 1.4E-07 60.5 2.7 87 376-508 189-275 (291)
273 2c0g_A ERP29 homolog, windbeut 95.5 0.079 2.7E-06 50.3 10.5 94 383-511 32-130 (248)
274 4htl_A Beta-glucoside kinase; 95.3 0.024 8.3E-07 55.4 6.7 49 4-67 4-52 (297)
275 4db3_A Glcnac kinase, N-acetyl 95.2 0.028 9.5E-07 55.9 6.6 50 5-69 25-74 (327)
276 3vov_A Glucokinase, hexokinase 95.1 0.018 6.2E-07 56.5 5.1 50 4-69 1-50 (302)
277 2hls_A Protein disulfide oxido 95.1 0.058 2E-06 51.0 8.5 63 384-481 25-93 (243)
278 2yhw_A Bifunctional UDP-N-acet 95.1 0.031 1.1E-06 55.9 6.8 50 4-69 30-79 (343)
279 2hoe_A N-acetylglucosamine kin 94.9 0.041 1.4E-06 55.9 7.1 52 4-69 87-138 (380)
280 3epq_A Putative fructokinase; 94.9 0.037 1.3E-06 54.3 6.5 48 3-67 2-49 (302)
281 2aa4_A Mannac kinase, putative 94.8 0.044 1.5E-06 53.2 6.9 51 5-69 2-52 (289)
282 2h3g_X Biosynthetic protein; p 94.8 0.8 2.7E-05 43.8 15.5 123 169-344 107-237 (268)
283 3htv_A D-allose kinase, alloki 94.7 0.01 3.5E-07 58.6 1.9 32 4-36 7-38 (310)
284 1z6r_A MLC protein; transcript 94.6 0.028 9.5E-07 57.7 5.1 52 3-69 84-135 (406)
285 1z05_A Transcriptional regulat 94.4 0.052 1.8E-06 56.1 6.5 51 4-69 108-158 (429)
286 2ec4_A FAS-associated factor 1 94.3 0.27 9.3E-06 43.9 10.4 106 381-511 52-166 (178)
287 3r8e_A Hypothetical sugar kina 94.3 0.025 8.4E-07 56.1 3.6 51 3-67 18-68 (321)
288 3gv1_A Disulfide interchange p 94.0 0.066 2.3E-06 46.4 5.5 41 377-424 7-47 (147)
289 1zbs_A Hypothetical protein PG 94.0 0.044 1.5E-06 53.4 4.8 50 5-67 1-50 (291)
290 3hz8_A Thiol:disulfide interch 94.0 0.028 9.4E-07 51.2 3.1 43 383-427 23-65 (193)
291 2gup_A ROK family protein; sug 93.9 0.073 2.5E-06 51.7 6.2 49 4-68 4-52 (292)
292 2cq9_A GLRX2 protein, glutared 93.6 0.17 5.7E-06 42.7 7.1 22 388-410 29-50 (130)
293 3mcp_A Glucokinase; structural 93.5 0.13 4.5E-06 51.7 7.3 51 3-69 8-62 (366)
294 1h75_A Glutaredoxin-like prote 93.3 0.07 2.4E-06 40.5 3.9 33 388-428 3-35 (81)
295 2hze_A Glutaredoxin-1; thiored 93.2 0.11 3.9E-06 42.5 5.3 22 387-409 20-41 (114)
296 2ap1_A Putative regulator prot 93.2 0.15 5.1E-06 50.4 7.1 50 4-68 24-73 (327)
297 1un2_A DSBA, thiol-disulfide i 93.1 0.016 5.4E-07 53.2 -0.2 44 383-428 112-158 (197)
298 1woq_A Inorganic polyphosphate 92.8 0.17 5.7E-06 48.5 6.7 52 4-69 12-65 (267)
299 2lqo_A Putative glutaredoxin R 92.7 0.38 1.3E-05 37.8 7.5 33 388-428 6-38 (92)
300 2q2r_A Glucokinase 1, putative 92.7 0.11 3.9E-06 52.4 5.5 53 3-71 28-84 (373)
301 2ews_A Pantothenate kinase; PA 92.7 0.34 1.2E-05 46.8 8.6 70 283-353 207-279 (287)
302 2yhx_A Hexokinase B; transfera 92.5 0.18 6.2E-06 52.2 6.7 58 4-69 61-118 (457)
303 1kte_A Thioltransferase; redox 92.4 0.097 3.3E-06 42.0 3.7 23 388-411 14-36 (105)
304 1r7h_A NRDH-redoxin; thioredox 92.2 0.12 4.1E-06 38.4 3.8 32 388-427 3-34 (75)
305 2ht9_A Glutaredoxin-2; thiored 92.2 0.2 6.8E-06 43.3 5.7 22 388-410 51-72 (146)
306 3c1r_A Glutaredoxin-1; oxidize 92.2 0.22 7.4E-06 41.2 5.7 15 388-403 27-41 (118)
307 3lm2_A Putative kinase; struct 92.1 0.19 6.4E-06 46.9 5.8 50 1-68 2-52 (226)
308 1zxo_A Conserved hypothetical 92.0 0.065 2.2E-06 52.1 2.7 28 5-34 1-28 (291)
309 1sz2_A Glucokinase, glucose ki 91.6 0.13 4.3E-06 51.2 4.2 31 2-33 12-43 (332)
310 3ic4_A Glutaredoxin (GRX-1); s 91.6 0.45 1.5E-05 36.9 6.7 22 388-410 14-35 (92)
311 3zyy_X Iron-sulfur cluster bin 91.5 0.33 1.1E-05 52.0 7.5 34 4-38 206-240 (631)
312 3bex_A Type III pantothenate k 91.5 0.29 9.9E-06 46.4 6.5 39 284-323 182-220 (249)
313 3qbx_A Anhydro-N-acetylmuramic 91.3 0.55 1.9E-05 46.8 8.4 60 283-346 256-316 (371)
314 2i7n_A Pantothenate kinase 1; 91.0 0.28 9.6E-06 48.9 6.0 70 283-353 276-351 (360)
315 3cqy_A Anhydro-N-acetylmuramic 90.8 0.51 1.8E-05 47.0 7.7 56 284-344 264-320 (370)
316 1bdg_A Hexokinase; phosphotran 90.6 0.42 1.4E-05 49.5 7.1 56 4-69 68-126 (451)
317 3djc_A Type III pantothenate k 90.5 0.42 1.4E-05 45.7 6.5 39 284-323 186-227 (266)
318 1saz_A Probable butyrate kinas 89.9 0.22 7.6E-06 50.4 4.3 32 3-36 1-32 (381)
319 3l9v_A Putative thiol-disulfid 89.8 0.072 2.4E-06 48.2 0.4 43 383-427 13-58 (189)
320 3feu_A Putative lipoprotein; a 89.7 0.11 3.9E-06 46.7 1.8 39 384-426 22-60 (185)
321 3nzn_A Glutaredoxin; structura 89.2 0.29 9.8E-06 39.2 3.6 24 386-410 22-45 (103)
322 1fov_A Glutaredoxin 3, GRX3; a 88.7 0.93 3.2E-05 33.9 6.1 21 388-409 3-23 (82)
323 2klx_A Glutaredoxin; thioredox 88.6 0.71 2.4E-05 35.5 5.5 32 388-427 8-39 (89)
324 3q6o_A Sulfhydryl oxidase 1; p 88.6 1.6 5.4E-05 40.8 9.0 57 447-513 184-240 (244)
325 2yan_A Glutaredoxin-3; oxidore 88.5 0.85 2.9E-05 36.5 6.1 22 388-410 19-45 (105)
326 3eno_A Putative O-sialoglycopr 87.6 1.1 3.6E-05 44.5 7.3 62 284-347 221-285 (334)
327 1cza_N Hexokinase type I; stru 87.5 0.37 1.3E-05 54.6 4.3 56 4-69 78-137 (917)
328 4a2a_A Cell division protein F 87.4 0.46 1.6E-05 48.7 4.6 62 284-346 293-360 (419)
329 2ych_A Competence protein PILM 87.2 0.76 2.6E-05 46.1 6.1 59 284-345 275-337 (377)
330 2ivn_A O-sialoglycoprotein end 87.1 1.1 3.6E-05 44.4 7.0 62 284-347 216-280 (330)
331 3o8m_A Hexokinase; rnaseh-like 86.7 0.9 3.1E-05 47.2 6.4 57 5-69 81-137 (485)
332 3t69_A Putative 2-dehydro-3-de 86.5 0.47 1.6E-05 46.5 3.9 33 3-36 6-38 (330)
333 4b9q_A Chaperone protein DNAK; 86.0 1.3 4.5E-05 47.6 7.5 96 285-384 305-406 (605)
334 4a2a_A Cell division protein F 84.8 1.5 5.1E-05 44.9 6.9 61 3-71 7-69 (419)
335 3qfu_A 78 kDa glucose-regulate 84.3 1.4 4.8E-05 44.3 6.5 64 285-349 315-379 (394)
336 3ttc_A HYPF, transcriptional r 83.7 2 6.8E-05 46.3 7.5 60 284-345 571-631 (657)
337 3i33_A Heat shock-related 70 k 82.9 1.5 5.1E-05 44.4 6.0 64 285-349 323-387 (404)
338 1yuw_A Heat shock cognate 71 k 82.6 0.65 2.2E-05 49.5 3.2 63 285-348 302-365 (554)
339 3l9s_A Thiol:disulfide interch 82.4 0.59 2E-05 42.2 2.4 42 383-426 20-64 (191)
340 1dkg_D Molecular chaperone DNA 82.1 2 6.7E-05 43.1 6.5 64 285-349 305-368 (383)
341 3nuw_A 2-OXO-3-deoxygalactonat 81.9 0.91 3.1E-05 43.8 3.6 33 3-37 5-37 (295)
342 3qmx_A Glutaredoxin A, glutare 81.5 1.1 3.6E-05 35.7 3.4 24 386-410 16-39 (99)
343 4gni_A Putative heat shock pro 80.1 2.8 9.4E-05 42.5 6.8 59 285-344 316-374 (409)
344 2ych_A Competence protein PILM 79.9 4.1 0.00014 40.6 8.0 59 4-69 13-72 (377)
345 1cza_N Hexokinase type I; stru 79.6 1.4 4.8E-05 49.8 4.8 58 3-69 525-585 (917)
346 2ews_A Pantothenate kinase; PA 79.5 1.4 4.6E-05 42.6 4.0 23 4-27 20-42 (287)
347 1nbw_A Glycerol dehydratase re 79.5 3.3 0.00011 43.3 7.0 61 3-72 1-63 (607)
348 4f9z_D Endoplasmic reticulum r 77.9 19 0.00066 32.8 11.4 95 384-512 130-224 (227)
349 3ctg_A Glutaredoxin-2; reduced 77.8 1 3.5E-05 37.7 2.3 15 388-403 39-53 (129)
350 2axo_A Hypothetical protein AT 77.4 8.3 0.00028 36.6 8.7 39 385-427 43-81 (270)
351 1wik_A Thioredoxin-like protei 77.4 3.4 0.00012 33.1 5.3 27 395-428 28-54 (109)
352 3c7m_A Thiol:disulfide interch 77.3 2.4 8.2E-05 37.7 4.8 43 383-427 16-59 (195)
353 1vhx_A Putative holliday junct 77.3 1.8 6.3E-05 37.3 3.8 26 1-27 1-26 (150)
354 3hm8_A Hexokinase-3; glucose, 77.0 2.7 9.2E-05 43.0 5.5 55 5-69 60-114 (445)
355 3h8q_A Thioredoxin reductase 3 77.0 1.4 4.8E-05 35.9 2.8 32 388-427 19-50 (114)
356 3vth_A Hydrogenase maturation 76.7 4.6 0.00016 44.4 7.6 61 284-346 665-728 (761)
357 3rhb_A ATGRXC5, glutaredoxin-C 76.0 1 3.6E-05 36.4 1.8 21 388-409 21-41 (113)
358 2khp_A Glutaredoxin; thioredox 75.0 2 6.9E-05 33.0 3.2 32 388-427 8-39 (92)
359 3sk3_A Acetate kinase, acetoki 74.0 2.7 9.2E-05 42.5 4.5 49 288-338 313-364 (415)
360 4gni_A Putative heat shock pro 72.7 2 6.9E-05 43.5 3.3 23 4-27 13-35 (409)
361 3en9_A Glycoprotease, O-sialog 72.7 7.2 0.00025 41.1 7.8 61 284-346 220-283 (540)
362 3tdg_A DSBG, putative uncharac 72.3 2.7 9.3E-05 40.0 3.8 40 383-426 146-185 (273)
363 4dvc_A Thiol:disulfide interch 72.1 2.6 8.9E-05 36.9 3.6 45 379-425 15-60 (184)
364 3qfu_A 78 kDa glucose-regulate 72.1 2.2 7.4E-05 42.9 3.4 23 4-27 18-40 (394)
365 2v7y_A Chaperone protein DNAK; 71.9 4 0.00014 42.7 5.5 63 286-349 275-337 (509)
366 3f9m_A Glucokinase; hexokinase 71.1 3.3 0.00011 42.7 4.4 57 5-69 78-138 (470)
367 1jce_A ROD shape-determining p 69.4 5.8 0.0002 38.9 5.8 62 285-349 246-312 (344)
368 3d2f_A Heat shock protein homo 67.2 5 0.00017 43.7 5.1 63 285-348 306-368 (675)
369 1dkg_D Molecular chaperone DNA 67.1 2.2 7.5E-05 42.8 2.1 22 4-26 2-23 (383)
370 3cet_A Conserved archaeal prot 66.7 3.6 0.00012 40.3 3.4 52 285-343 248-299 (334)
371 3bci_A Disulfide bond protein 65.6 5.7 0.0002 35.0 4.4 43 383-426 10-54 (186)
372 2f9w_A Pantothenate kinase; CO 64.1 5 0.00017 38.2 3.8 39 284-323 203-242 (271)
373 4b9q_A Chaperone protein DNAK; 63.4 4.2 0.00014 43.6 3.6 24 3-27 1-24 (605)
374 3msz_A Glutaredoxin 1; alpha-b 62.8 3.1 0.00011 31.5 1.8 20 388-408 6-25 (89)
375 3gn3_A Putative protein-disulf 62.4 5 0.00017 35.6 3.3 42 383-425 13-54 (182)
376 1aba_A Glutaredoxin; electron 61.8 9.9 0.00034 28.7 4.6 32 388-427 2-37 (87)
377 1yuw_A Heat shock cognate 71 k 61.7 8.3 0.00028 40.8 5.5 26 1-27 1-26 (554)
378 3i33_A Heat shock-related 70 k 61.2 4.4 0.00015 40.8 3.1 23 3-26 22-44 (404)
379 2v7y_A Chaperone protein DNAK; 59.5 6 0.0002 41.4 3.8 21 5-26 3-23 (509)
380 1u6z_A Exopolyphosphatase; alp 59.3 14 0.00046 38.8 6.5 23 3-25 10-32 (513)
381 3d2f_A Heat shock protein homo 59.2 4.2 0.00014 44.3 2.6 20 5-24 3-22 (675)
382 3ktb_A Arsenical resistance op 59.2 26 0.00088 28.0 6.5 77 388-491 7-89 (106)
383 4ijn_A Acetate kinase, acetoki 58.1 8.5 0.00029 38.5 4.4 48 288-337 298-347 (398)
384 2ct6_A SH3 domain-binding glut 56.4 23 0.0008 28.2 6.2 39 388-428 10-48 (111)
385 3kgk_A Arsenical resistance op 56.2 33 0.0011 27.6 6.7 77 388-491 4-86 (110)
386 3t58_A Sulfhydryl oxidase 1; o 55.7 12 0.00043 39.1 5.5 39 447-491 184-222 (519)
387 4ep4_A Crossover junction endo 55.5 21 0.0007 31.1 6.0 22 5-26 2-23 (166)
388 1t1v_A SH3BGRL3, SH3 domain-bi 55.0 21 0.00071 27.3 5.5 39 388-428 4-42 (93)
389 3gha_A Disulfide bond formatio 54.4 12 0.00042 33.6 4.6 45 381-426 26-72 (202)
390 1jce_A ROD shape-determining p 53.8 6.9 0.00024 38.4 3.0 18 4-21 3-20 (344)
391 2zgy_A Plasmid segregation pro 53.7 9 0.00031 37.2 3.8 59 287-352 250-311 (320)
392 3mdq_A Exopolyphosphatase; str 53.0 11 0.00039 36.6 4.3 22 4-25 4-25 (315)
393 2kho_A Heat shock protein 70; 53.0 6.3 0.00021 42.3 2.7 60 288-348 308-367 (605)
394 2zgy_A Plasmid segregation pro 52.3 29 0.001 33.5 7.3 22 6-27 2-23 (320)
395 1iv0_A Hypothetical protein; r 51.9 14 0.00048 29.1 3.9 22 6-27 3-24 (98)
396 4g9i_A Hydrogenase maturation 51.8 18 0.0006 39.9 6.0 54 284-339 677-730 (772)
397 3khy_A Propionate kinase; csgi 50.6 14 0.00049 36.6 4.6 49 289-339 289-339 (384)
398 1z3e_A Regulatory protein SPX; 50.1 24 0.00082 29.2 5.4 64 388-466 3-70 (132)
399 3ven_A O-carbamoyltransferase 50.1 27 0.00091 36.9 6.8 59 285-345 280-339 (576)
400 3gmf_A Protein-disulfide isome 49.9 25 0.00084 31.7 5.8 48 378-426 9-58 (205)
401 3f4s_A Alpha-DSBA1, putative u 49.5 16 0.00056 33.5 4.6 44 382-426 37-82 (226)
402 1nu0_A Hypothetical protein YQ 49.3 18 0.0006 30.5 4.4 24 4-27 3-26 (138)
403 1pn0_A Phenol 2-monooxygenase; 48.7 2.1E+02 0.0071 30.6 14.0 137 356-511 480-644 (665)
404 3ga8_A HTH-type transcriptiona 48.4 10 0.00035 28.4 2.5 36 381-416 23-64 (78)
405 2l3i_A Aoxki4A, antimicrobial 47.7 6.3 0.00022 22.4 0.9 10 518-527 1-10 (30)
406 3cer_A Possible exopolyphospha 47.6 12 0.0004 37.0 3.5 22 3-24 15-36 (343)
407 2kho_A Heat shock protein 70; 47.1 4.5 0.00016 43.4 0.4 21 5-26 3-23 (605)
408 1t6c_A Exopolyphosphatase; alp 45.7 13 0.00044 36.2 3.4 23 4-26 12-34 (315)
409 4h0p_A Acetate kinase; askha ( 45.3 17 0.00058 36.8 4.2 52 287-339 320-378 (438)
410 1hjr_A Holliday junction resol 42.7 35 0.0012 29.4 5.3 23 5-27 2-24 (158)
411 3eno_A Putative O-sialoglycopr 42.5 43 0.0015 32.7 6.7 33 1-35 3-35 (334)
412 2d0o_A DIOL dehydratase-reacti 42.4 38 0.0013 35.4 6.4 59 3-70 1-62 (610)
413 3aap_A Ectonucleoside triphosp 42.4 16 0.00056 36.1 3.6 22 3-24 2-23 (353)
414 2dkh_A 3-hydroxybenzoate hydro 42.0 2.4E+02 0.0082 29.9 13.2 128 356-491 468-621 (639)
415 3r9p_A ACKA; ssgcid, seattle s 41.7 23 0.0008 35.3 4.5 47 288-336 289-337 (391)
416 2jvx_A NF-kappa-B essential mo 41.5 3 0.0001 24.7 -1.1 21 396-416 5-25 (28)
417 3ghf_A Septum site-determining 41.4 46 0.0016 27.1 5.6 49 382-437 45-93 (120)
418 3cj1_A Ectonucleoside triphosp 41.2 16 0.00053 37.6 3.3 21 4-24 34-54 (456)
419 4gib_A Beta-phosphoglucomutase 41.1 7.6 0.00026 35.9 0.9 23 7-30 9-39 (250)
420 2wci_A Glutaredoxin-4; redox-a 41.0 11 0.00036 31.7 1.7 25 395-426 48-72 (135)
421 3js6_A Uncharacterized PARM pr 40.9 15 0.00052 36.3 3.1 53 284-338 261-316 (355)
422 2iir_A Acetate kinase; transfe 40.5 24 0.00081 35.4 4.4 48 290-339 299-348 (403)
423 3fhk_A UPF0403 protein YPHP; d 40.2 1.6E+02 0.0055 24.5 10.8 61 450-511 82-142 (147)
424 2e1z_A Propionate kinase; TDCD 40.2 26 0.00089 35.3 4.6 48 290-339 307-356 (415)
425 3gx8_A Monothiol glutaredoxin- 39.7 34 0.0012 27.8 4.6 14 396-409 30-43 (121)
426 3l78_A Regulatory protein SPX; 39.5 20 0.00069 29.2 3.2 63 390-466 3-69 (120)
427 4apw_A ALP12; actin-like prote 39.4 62 0.0021 31.3 7.3 61 286-352 251-314 (329)
428 3fz4_A Putative arsenate reduc 38.8 32 0.0011 28.0 4.3 64 389-466 5-72 (120)
429 4h0o_A Acetate kinase; askha ( 38.5 23 0.00078 35.4 3.9 52 287-339 300-352 (404)
430 3zyw_A Glutaredoxin-3; metal b 38.4 15 0.00051 29.5 2.2 15 395-409 29-43 (111)
431 3l4n_A Monothiol glutaredoxin- 37.7 14 0.00047 30.6 1.9 21 388-409 16-36 (127)
432 3en9_A Glycoprotease, O-sialog 37.2 66 0.0023 33.6 7.6 65 1-68 3-67 (540)
433 3gkx_A Putative ARSC family re 37.0 26 0.0009 28.5 3.5 63 390-466 7-73 (120)
434 2fsj_A Hypothetical protein TA 36.1 18 0.00063 35.5 2.9 23 314-339 297-319 (346)
435 4apw_A ALP12; actin-like prote 34.3 22 0.00077 34.6 3.1 21 1-21 4-24 (329)
436 1g99_A Acetate kinase; alpha/b 32.9 38 0.0013 34.0 4.5 47 290-338 299-347 (408)
437 2wem_A Glutaredoxin-related pr 32.4 31 0.001 28.0 3.1 14 396-409 34-47 (118)
438 2l4c_A Endoplasmic reticulum r 31.9 2E+02 0.0069 23.2 9.6 82 384-509 39-120 (124)
439 3ipz_A Monothiol glutaredoxin- 31.2 23 0.00079 28.1 2.2 14 396-409 32-45 (109)
440 1sji_A Calsequestrin 2, calseq 30.8 1.3E+02 0.0044 29.1 8.1 92 387-512 248-345 (350)
441 4am6_A Actin-like protein ARP8 28.6 23 0.00079 37.8 2.2 46 290-340 479-526 (655)
442 1k8k_A ARP3, actin-like protei 28.2 23 0.00078 35.7 2.0 27 314-341 316-342 (418)
443 2ivn_A O-sialoglycoprotein end 27.5 45 0.0015 32.4 4.0 30 5-36 2-31 (330)
444 2v2f_A Penicillin binding prot 25.9 32 0.0011 19.5 1.5 16 476-491 5-20 (26)
445 2g2q_A Glutaredoxin-2; thiored 25.2 15 0.00053 29.6 0.1 104 385-512 2-115 (124)
446 3zx3_A Ectonucleoside triphosp 25.1 42 0.0015 34.3 3.3 21 4-24 34-54 (452)
447 2in3_A Hypothetical protein; D 24.8 75 0.0026 28.1 4.8 38 386-425 8-45 (216)
448 1u6t_A SH3 domain-binding glut 24.6 1.4E+02 0.0047 24.3 5.8 39 388-428 2-40 (121)
449 1s3c_A Arsenate reductase; ARS 24.3 46 0.0016 27.9 2.9 63 391-467 6-72 (141)
450 3rdw_A Putative arsenate reduc 24.0 42 0.0014 27.3 2.5 64 390-467 8-76 (121)
451 3f0i_A Arsenate reductase; str 22.7 31 0.0011 28.0 1.5 64 390-467 7-75 (119)
452 3us3_A Calsequestrin-1; calciu 21.8 2.5E+02 0.0087 27.2 8.4 97 385-512 248-347 (367)
453 2fsj_A Hypothetical protein TA 21.5 49 0.0017 32.3 3.0 22 4-27 21-42 (346)
454 1eik_A RNA polymerase subunit 21.2 73 0.0025 23.7 3.1 36 123-165 22-57 (77)
455 3hi0_A Putative exopolyphospha 21.2 64 0.0022 33.5 3.8 22 4-25 15-36 (508)
No 1
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=100.00 E-value=4.5e-59 Score=499.54 Aligned_cols=333 Identities=21% Similarity=0.290 Sum_probs=278.4
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+|+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+++..+
T Consensus 1 M~m~~~lgIDiGtts~K~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~I~~I 74 (504)
T 3ll3_A 1 MSLKYIIGMDVGTTATKGVLYDINGKA-VASVSKGYPLIQ-----TKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAI 74 (504)
T ss_dssp -CCEEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCEEEEEEecCCceEEEEEcCCCCE-EEEEEeecceec-----CCCCcEEECHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 888999999999999999999999998 999999887544 58999999999999865444
Q ss_pred ----------------------HhhCCchhhhhhceeccC--------------------------------------CC
Q psy224 66 ----------------------ILRLPKDHLKQVKHIEST--------------------------------------ND 85 (547)
Q Consensus 66 ----------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~ 85 (547)
|.|+|+|+.++++.+... .+
T Consensus 75 gis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~~~~ 154 (504)
T 3ll3_A 75 SWSSQMHSLIGLGSDDELLTNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKW 154 (504)
T ss_dssp EEEECSSCBEEECTTSCBSSCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHHHHCCEE
T ss_pred EEECCCCcEEEECCCCCCcccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHHHHHhhe
Confidence 578899987766655321 15
Q ss_pred cchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCC
Q psy224 86 LSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKD 162 (547)
Q Consensus 86 l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g 162 (547)
++++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||++|
T Consensus 155 ~~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g 230 (504)
T 3ll3_A 155 IGIKEYIIFRLTG--KLVTDTTMAAGTGILNLKTLTWDQELLDIL--KIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSD 230 (504)
T ss_dssp ECHHHHHHHHHHS--CCEEEHHHHTTTTCBCTTTSSBCHHHHHHH--TCCGGGSCEEECTTCEECCCCHHHHHHHTCCTT
T ss_pred eCHHHHHHHHHhC--CcccchhHhhcccCeeCCCCCcCHHHHHHc--CCCHHHCCCeeCCcceeeccCHHHHHhcCCCcC
Confidence 7999999999999 999999999999999999999999999999 599999999999999999999987 999999
Q ss_pred CeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc------cccc----cccchhH----HHHHhHHHHHHHHhC
Q psy224 163 TPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE------MGAS----MNGGNCL----ATFVCTLQNWFKEFG 227 (547)
Q Consensus 163 ~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~------~~~~----~~gg~~~----~~~~g~~~~w~~~~~ 227 (547)
+||++|+||++|+++|+|+. +|++++|+|||+++.++++ .+.. ..++.++ .+++|.+++|+++.+
T Consensus 231 ~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~ 310 (504)
T 3ll3_A 231 TKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTL 310 (504)
T ss_dssp CEEEEEEEHHHHHHHTTTCCSTTEEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEEEEESCSHHHHHHHHHHH
T ss_pred CCEEEEccHHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEEeehhhHHHHHHHHHHHh
Confidence 99999999999999999998 7999999999999876532 1110 0111111 245677889999976
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIM 304 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~ 304 (547)
.... ...+++.+ .++++++++++++|+|||.|+|+|+|++ |+|+|++..| +++|++||++||++|.+|+++
T Consensus 311 ~~~~--~~~~~~~~---~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEgia~~~r~~~ 384 (504)
T 3ll3_A 311 FDAD--ETPQDFLD---VAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMH-QKPEMARAVIEGIIFNLYDAA 384 (504)
T ss_dssp TCTT--CCHHHHHH---HHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccch--hHHHHHHH---HHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4321 11222111 1335667899999999999999999975 8999999987 999999999999999999999
Q ss_pred hhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 305 NRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 305 ~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+ .+++.+ +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 385 ~--~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 431 (504)
T 3ll3_A 385 S--NLIKNTKKPVAINATGGF-LKSDFVRQLCANIFNVPIVTMKEQQSGT 431 (504)
T ss_dssp H--HHHTTSCCCSEEEEESGG-GCSHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred H--HHHHcCCCCCEEEEeCch-hcCHHHHHHHHHhhCCeEEecCCCCchh
Confidence 9 477754 7899999998 9999999999999999999987666443
No 2
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=100.00 E-value=6.1e-58 Score=491.24 Aligned_cols=333 Identities=17% Similarity=0.230 Sum_probs=272.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+||.||||++||+++..+
T Consensus 6 ~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~ 79 (508)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRLPDTV-VAVASRPTTLSS-----PHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGG 79 (508)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTEE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEE
T ss_pred CCEEEEEEecCcceEEEEECCCCCE-EEEEEEecceec-----CCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEE
Confidence 5799999999999999999999998 999999887654 57999999999999965544
Q ss_pred -----------------------HhhCCchhhhhhceeccC--------------------------------------C
Q psy224 66 -----------------------ILRLPKDHLKQVKHIEST--------------------------------------N 84 (547)
Q Consensus 66 -----------------------i~~~d~r~~~~~~~i~~~--------------------------------------~ 84 (547)
|.|.|+|+.++++.+... .
T Consensus 80 Igis~~~~~~v~~D~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 159 (508)
T 3ifr_A 80 ICVTGMLPAVVLLDDRGAVLRPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIAT 159 (508)
T ss_dssp EEEEECSSCBEEECTTSCBCSCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHTCSE
T ss_pred EEEECCCCcEEEECCCCCCcccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHHHhh
Confidence 467888877665554311 1
Q ss_pred CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCC
Q psy224 85 DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINK 161 (547)
Q Consensus 85 ~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~ 161 (547)
+++++|||.|+||| +.++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||++
T Consensus 160 ~l~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~ 235 (508)
T 3ifr_A 160 VCGSYDYINMLLTG--ERVVDRNWALEGGFIDLASGTVEADLVALA--HIPPSAVPPAHPTHRVLGAVTAEAAALTGLPT 235 (508)
T ss_dssp EECHHHHHHHHHHC--CCCEEHHHHHHHTCEETTTTEECHHHHHTT--TSCGGGSCCEECTTSEEEECCHHHHHHHCCCT
T ss_pred hcCchHHHHHHhcC--CccccHhHhhcccCccCccCCCCHHHHHHc--CCCHHHCCCCcCCCCeeeccCHHHHHHhCCCC
Confidence 57899999999999 899999999999999999999999999999 599999999999999999999987 99999
Q ss_pred CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhccc-----c-----cccccchhH---HHHHhHHHHHHHHhC
Q psy224 162 DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM-----G-----ASMNGGNCL---ATFVCTLQNWFKEFG 227 (547)
Q Consensus 162 g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~-----~-----~~~~gg~~~---~~~~g~~~~w~~~~~ 227 (547)
|+||++|+||++|+++|+|+. +|++++|+|||+++.++++. . ...++.+.+ ..++|.+++|+++.+
T Consensus 236 g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~ 315 (508)
T 3ifr_A 236 GLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSALNWLAKLL 315 (508)
T ss_dssp TCEEECCEEHHHHHHHHTTCCSTTEEEEEESSSEEEEECBSCCCCBTTBBCCBCSSTTCBCCEEEESSSHHHHHHHHHHH
T ss_pred CCeEEEECchHHHHHHhCCCCCCCcEEEEechhhhheeeCCCcccCCCcceeeeecCCceEEechhhhhHHHHHHHHHHH
Confidence 999999999999999999997 89999999999998765421 0 011222211 245678889999975
Q ss_pred CCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhh
Q psy224 228 FNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIM 304 (547)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~ 304 (547)
........++++.+. +++.++++++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||++|.+|+++
T Consensus 316 ~~~~~~~~~~~l~~~---a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~ 391 (508)
T 3ifr_A 316 APEAGEAAHAQLDAL---AAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSH-TRGHLWRALLEAVALAFRHHV 391 (508)
T ss_dssp STTCTTHHHHHHHHH---HHTSCTTGGGCEEECCTTCCC----CCCCCCEEESCCTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHH---HhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 311110123333321 234567899999999999999999875 8999999987 999999999999999999999
Q ss_pred hhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 305 NRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 305 ~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+ .+++.| +++|+++||| +||++|+|++||++|+||.+++..+..+
T Consensus 392 ~--~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 438 (508)
T 3ifr_A 392 A--VLDDIGHAPQRFFASDGG-TRSRVWMGIMADVLQRPVQLLANPLGSA 438 (508)
T ss_dssp H--HHHHHTCCCCEEEEESGG-GGCHHHHHHHHHHHTSCEEEEECCSTHH
T ss_pred H--HHHhcCCCCCEEEEeCCc-ccCHHHHHHHHHHhCCeEEecCCCCchH
Confidence 9 476655 6899999998 9999999999999999999988666443
No 3
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=100.00 E-value=1.9e-57 Score=487.78 Aligned_cols=331 Identities=19% Similarity=0.240 Sum_probs=276.2
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH--------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC-------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~-------------- 65 (547)
|+ |+|+||||+||||+|++|+|.+|++ +++.+.+++... +.+|+.||||++||+++..+
T Consensus 1 ~~mm~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~I 74 (511)
T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDGGL-HFQRSIALETYG-----DGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRV 74 (511)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBS-----TTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CccccEEEEEEeCCCceEEEEECCCCCE-EEEEEeecceec-----CCCCCEEECHHHHHHHHHHHHHHHHhcCCChhHe
Confidence 54 6799999999999999999999998 999999887644 58899999999999865444
Q ss_pred -------------------------HhhCCchhhhhhceeccC-------------------------------------
Q psy224 66 -------------------------ILRLPKDHLKQVKHIEST------------------------------------- 83 (547)
Q Consensus 66 -------------------------i~~~d~r~~~~~~~i~~~------------------------------------- 83 (547)
|.|.|+|+.++++.+...
T Consensus 75 ~~Igis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~ 154 (511)
T 3hz6_A 75 SAIVLSGQMQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRL 154 (511)
T ss_dssp EEEEEEECCSCBEEECTTSCBSSCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTTC
T ss_pred EEEEEecccccEEEECCCcCCCcCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHHH
Confidence 457788876655544210
Q ss_pred -CCcc-hhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cC
Q psy224 84 -NDLS-FQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LG 158 (547)
Q Consensus 84 -~~l~-~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~G 158 (547)
.+++ ++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +|
T Consensus 155 ~~~l~~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~l~~~~a~~~G 230 (511)
T 3hz6_A 155 RHVVLGAKDYVVLRLTG--RHATDRTNASTTGLYRPKDDAWHVELLADY--GFSLDLMPRLLEPGEQVGGVSALAARQTG 230 (511)
T ss_dssp CEEECSHHHHHHHHHHS--CCEECHHHHHHTTCEETTTTEECHHHHHHT--TCCGGGSCEECCTTSEEEECCHHHHHHHC
T ss_pred HHHhcCcHHHHHHHHhC--CceeeHhHhhcccceeCCCCCcCHHHHHHh--CCCHHHCCCCcCCCCcccccCHHHHHhhC
Confidence 1578 99999999999 999999999999999999999999999999 599999999999999999999987 99
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-ccc-c------------cccchhH---HHHHhHHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-MGA-S------------MNGGNCL---ATFVCTLQ 220 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-~~~-~------------~~gg~~~---~~~~g~~~ 220 (547)
|++|+||++|+||++|+++|+|+. +|++++|+|||+++.++++ ... . .++.+.. ..++|.++
T Consensus 231 l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~ 310 (511)
T 3hz6_A 231 FVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNIL 310 (511)
T ss_dssp CCTTCEEECCEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHH
T ss_pred CCCCCeEEEECchHHHHHHhCCCCCCCcEEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEEeehhhHHHHH
Confidence 999999999999999999999997 8999999999999876533 111 1 0111111 24567889
Q ss_pred HHHHHhCC--CCchhHHHHHHHhccCcccccccC---CCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHH
Q psy224 221 NWFKEFGF--NVPQNQIWAKLINASDPINHITRH---HSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVAL 292 (547)
Q Consensus 221 ~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~ 292 (547)
+|+++.+. ....++.++++++ +++++ +++++|+|||.|+|+|+|++ |+|+|++..| +++|++||+
T Consensus 311 ~W~~~~~~~~~~~~~~~l~~~a~------~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAv 383 (511)
T 3hz6_A 311 QWALTLVGHRPGEDCAEYFHMAA------AEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGAT-TRAQILLAV 383 (511)
T ss_dssp HHHGGGGTCCTTSCSHHHHHHHH------HHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTC-CHHHHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHH------hCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCC-CHHHHHHHH
Confidence 99999865 3223444444432 34567 89999999999999999986 7999999997 999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCce-EEecchhhhh
Q psy224 293 CEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQL-IVEQDQAMRD 352 (547)
Q Consensus 293 ~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v-~~~~~~~~~~ 352 (547)
+||++|.+|++++ .+++ | +++|+++||| +||++|+|++||++|+|| .++...+..+
T Consensus 384 lEgia~~~~~~~~--~l~~-g~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~~e~~a 441 (511)
T 3hz6_A 384 LEGAALSLRWCAE--LLGM-EKVGLLKVVGGG-ARSEAWLRMIADNLNVSLLVKPDAHLHPL 441 (511)
T ss_dssp HHHHHHHHHHHHH--HHTG-GGCCEEEEESGG-GGCHHHHHHHHHHHTCEEEECCCGGGHHH
T ss_pred HHHHHHHHHHHHH--HHhc-CCCCEEEEeCch-hcCHHHHHHHHHHHCCeeEEecCCCCchH
Confidence 9999999999999 4766 5 8999999998 999999999999999999 8877666444
No 4
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=1.1e-55 Score=476.03 Aligned_cols=332 Identities=16% Similarity=0.218 Sum_probs=271.8
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+++|+||||+||||+|++|||.+|++ +++++.+++..+ |.+||+||||++||+++..+
T Consensus 2 ekkYvlgID~GTss~Ka~l~d~~G~~-va~~~~~~~~~~-----p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~ 75 (526)
T 3ezw_A 2 EKKYIVALDQGTTSSRAVVMDHDANI-ISVSQREFEQIY-----PKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIA 75 (526)
T ss_dssp -CCEEEEEEECSSEEEEEEECTTCCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CceEEEEEEccccceeeeEEcCCCCE-EEEEEEecCccc-----CCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 47899999999999999999999998 999999997655 58999999999999855443
Q ss_pred -------------------------HhhCCchhhhhhceeccCC------------------------------------
Q psy224 66 -------------------------ILRLPKDHLKQVKHIESTN------------------------------------ 84 (547)
Q Consensus 66 -------------------------i~~~d~r~~~~~~~i~~~~------------------------------------ 84 (547)
|.|+|+|+.++++.+....
T Consensus 76 aIgis~q~~~~v~~D~~~G~pl~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~ 155 (526)
T 3ezw_A 76 AIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERA 155 (526)
T ss_dssp EEEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHH
T ss_pred EEEEeCCCCCEEEEECCCCeEcccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHHHH
Confidence 6788999877666553210
Q ss_pred ------CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccC
Q psy224 85 ------DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLG 158 (547)
Q Consensus 85 ------~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~G 158 (547)
+..+.+||.|+|||....++|+|+||+|+|||+++++||+++++.+ +|++++||+++++++++|+++.++ .
T Consensus 156 ~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~As~t~l~d~~~~~w~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~-~ 232 (526)
T 3ezw_A 156 RRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVL--DIPREMLPEVRRSSEVYGQTNIDG-K 232 (526)
T ss_dssp HTTCEEEECHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGCCEEECSEEEEEEECTTC-T
T ss_pred HHhhhhccchhHHHhhhhcCCCceEEEchhhccccCcCccccCcCHHHHHHc--CCCHHHCCCccccccccCccchhh-h
Confidence 2467889999999866788999999999999999999999999999 599999999999999999999875 2
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc-------ccc--------ccccchhH---HHHHhHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE-------MGA--------SMNGGNCL---ATFVCTL 219 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~-------~~~--------~~~gg~~~---~~~~g~~ 219 (547)
+..|+||++|++|++|+++|+|+. +|++.+|+|||+++.+.+. .+. ...+.+.+ ..++|.+
T Consensus 233 ~~~gipV~~g~gD~~aa~~G~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~ 312 (526)
T 3ezw_A 233 GGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGAS 312 (526)
T ss_dssp TSCCEEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHH
T ss_pred cCCCCcEEEEcchHHHHhhhccccccceeEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHH
Confidence 345789999999999999999998 8999999999998765531 000 00011111 1346778
Q ss_pred HHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHH
Q psy224 220 QNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGI 296 (547)
Q Consensus 220 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egi 296 (547)
++||++.+.........+.+. ..+++++|++|+|||.|+|+|+|++ |+|+||+..| +++||+||++||+
T Consensus 313 ~~Wl~~~~~~~~~~~~~~~~~-------~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~-~~~~i~RAvlEgi 384 (526)
T 3ezw_A 313 IQWLRDEMKLINDAYDSEYFA-------TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGV-NANHIIRATLESI 384 (526)
T ss_dssp HHHHHHTSCCCCSSSCHHHHH-------TTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHH-------hccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCC-CHHHHHHHHHHHH
Confidence 899999864433322222222 2356889999999999999999986 8999999998 9999999999999
Q ss_pred HHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 297 INNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 297 a~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
+|.+|++++. +++ .| +++|+++||| +||++|+|++||++|+||.++...+..+.
T Consensus 385 a~~~r~~le~--l~~~~g~~~~~i~v~GGg-aks~~~~Qi~ADvlg~pV~~~~~~E~~al 441 (526)
T 3ezw_A 385 AYQTRDVLEA--MQADSGIRLHALRVDGGA-VANNFLMQFQSDILGTRVERPEVREVTAL 441 (526)
T ss_dssp HHHHHHHHHH--HHHHHCCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEEESCCCHHHH
T ss_pred HHHHHHHHHH--HHHhcCCCCCEEEEECch-hhCHHHHHHHHHHHCCEEEeCCCCchHHH
Confidence 9999999994 654 55 7899999998 99999999999999999999887765443
No 5
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=100.00 E-value=3.7e-55 Score=469.79 Aligned_cols=331 Identities=19% Similarity=0.279 Sum_probs=271.9
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH--------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC-------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~-------------- 65 (547)
|. |+|+||||+|||++|++|+|.+|++ +++.+.+++..+ +.+|+.||||++||+.+..+
T Consensus 1 m~~~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (506)
T 3h3n_X 1 MAEKNYVMAIDQGTTSSRAIIFDRNGKK-IGSSQKEFPQYF-----PKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEA 74 (506)
T ss_dssp -CCCCEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCCCEEEEEEcCCCceEEEEECCCCCE-EEEEEEecCccC-----CCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 64 6899999999999999999999998 999998887654 47999999999999865443
Q ss_pred ---------------------------HhhCCchhhhhhceeccC-----------------------------------
Q psy224 66 ---------------------------ILRLPKDHLKQVKHIEST----------------------------------- 83 (547)
Q Consensus 66 ---------------------------i~~~d~r~~~~~~~i~~~----------------------------------- 83 (547)
|.|.|+|+.++++.+...
T Consensus 75 I~~Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 154 (506)
T 3h3n_X 75 IAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQE 154 (506)
T ss_dssp EEEEEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHH
T ss_pred eEEEEeeCCcccEEEEeCCCCeECCCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 568899887766554321
Q ss_pred ---C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc
Q psy224 84 ---N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW 156 (547)
Q Consensus 84 ---~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~ 156 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~ 232 (506)
T 3h3n_X 155 KADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEILDLL--NIPSSMLPEVKSNSEVYGHTRSYR 232 (506)
T ss_dssp HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHHHHTTTSEETTTTEECHHHHHHT--TCCGGGCCEEECSEEEEEECCGGG
T ss_pred HHhcCCeEEecHHHHHHHHhcCCceeeeEHHHhhhhhCeecCCCCcCHHHHHHc--CcCHHHCCceecCCCcceeeChHH
Confidence 0 3458999999999943478999999999999999999999999999 599999999999999999999987
Q ss_pred -cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----ccc------ccccc--hhH---HHHH
Q psy224 157 -LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGA------SMNGG--NCL---ATFV 216 (547)
Q Consensus 157 -~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~------~~~gg--~~~---~~~~ 216 (547)
+| +|+||++|++|++|+++|+|+. +|++++|+|||+++.+.. + .+. ..++. +.+ .+++
T Consensus 233 ~lg--~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 310 (506)
T 3h3n_X 233 FYG--SEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVA 310 (506)
T ss_dssp TTT--CCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCS
T ss_pred hcC--CCCeEEEECCcHHHHHHhCCCCCCCcEEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhH
Confidence 77 7999999999999999999997 899999999999765432 1 111 11111 111 2456
Q ss_pred hHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHH
Q psy224 217 CTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALC 293 (547)
Q Consensus 217 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~ 293 (547)
|.+++|+++.+.....++.+++++.. ++ .+++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++
T Consensus 311 G~~~~W~~~~~~~~~~~~~l~~~a~~------~~-~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvl 382 (506)
T 3h3n_X 311 GSAIQWLRDGLRMIETSPQSEELAAK------AK-GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGT-TKEDFVRATL 382 (506)
T ss_dssp SHHHHHHHHTSCCCSSTTHHHHHHTT------CC-SCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhc------CC-CCCceEEeccccCCCCCccCCCCCEEEEccCCCC-CHHHHHHHHH
Confidence 78899999986433344555555432 23 348999999999999999975 8999999997 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++|.+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||.++...+..+
T Consensus 383 Egia~~~r~~~~--~l~~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 441 (506)
T 3h3n_X 383 QAVAYQSKDVID--TMKKDSGIDIPLLKVDGGA-AKNDLLMQFQADILDIDVQRAANLETTA 441 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHHCSCCCEEEEESGG-GGCHHHHHHHHHHHTSEEEECSSSCHHH
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCCEEEEeccc-ccCHHHHHHHHHHhCCeEEecCCCcchh
Confidence 999999999999 4766 45 7899999998 9999999999999999999987665443
No 6
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=2.5e-55 Score=471.14 Aligned_cols=331 Identities=17% Similarity=0.248 Sum_probs=272.7
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+|+|+||||+|||++|++|+|.+|++ +++.+.+++..+ +.+|+.||||++||+.+..+
T Consensus 1 ~~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~ 74 (510)
T 2p3r_A 1 EKKYIVALDQGTTSSRAVVMDHDANI-ISVSQREFEQIY-----PKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIA 74 (510)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCcEEEEEEcCCcceEEEEECCCCCE-EEEEEEeccccc-----CCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 47899999999999999999999998 999999987654 58999999999999865443
Q ss_pred -------------------------HhhCCchhhhhhceeccC-------------------------------------
Q psy224 66 -------------------------ILRLPKDHLKQVKHIEST------------------------------------- 83 (547)
Q Consensus 66 -------------------------i~~~d~r~~~~~~~i~~~------------------------------------- 83 (547)
|.|.|+|+.++++.+...
T Consensus 75 ~Igis~~~~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~ 154 (510)
T 2p3r_A 75 AIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERA 154 (510)
T ss_dssp EEEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHHHH
T ss_pred EEEEeCCcCcEEEEECCCCeECcccccccCccHHHHHHHHHhcccHHHHHHHhCCCCCcccHHHHHHHHHHcCHHHHHHH
Confidence 568888887666554311
Q ss_pred -C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccC
Q psy224 84 -N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLG 158 (547)
Q Consensus 84 -~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~G 158 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++.+|
T Consensus 155 ~~~~~l~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~lG 232 (510)
T 2p3r_A 155 RRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVL--DIPREMLPEVRRSSEVYGQTNIDGKG 232 (510)
T ss_dssp HTTCEEEECHHHHHHHHHTTTSCCEEEHHHHHTTSSEETTTTEECHHHHHHH--TCCGGGCCEEECSEEEEEEECTTCTT
T ss_pred hcCCeEecCHHHHHHHHhcCCCeEEeehhHhhhhccccCccCCCCHHHHHHh--CCCHHHCCceecCCCceeeechhhcC
Confidence 1 2357999999999954588999999999999999999999999999 59999999999999999999887688
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----ccc------cccc--chhH---HHHHhHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGA------SMNG--GNCL---ATFVCTL 219 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~------~~~g--g~~~---~~~~g~~ 219 (547)
++|+||++|++|++|+++|+|+. +|++++|+|||+++.+.. + .+. ..++ .+.+ ..++|.+
T Consensus 233 -~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~ 311 (510)
T 2p3r_A 233 -GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGAS 311 (510)
T ss_dssp -SCCEEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHH
T ss_pred -CCCCeEEEECchHHHHHHhcCCCCCCcEEEeecchheeEEecCCccccCCCCeeEEEeeecCCCceEEEccchhhHHHH
Confidence 99999999999999999999997 899999999999654331 1 111 1111 1111 2457788
Q ss_pred HHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHH
Q psy224 220 QNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGI 296 (547)
Q Consensus 220 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egi 296 (547)
++|+++.+.....++.+++++.. + +++++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++||+
T Consensus 312 ~~W~~~~~~~~~~~~~l~~~a~~------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEgi 383 (510)
T 2p3r_A 312 IQWLRDEMKLINDAYDSEYFATK------V-QNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGV-NANHIIRATLESI 383 (510)
T ss_dssp HHHHHHTSCCCCSSSCHHHHHTT------S-SSCTTCEEECCTTCCBTTTCCTTCCEEEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHhh------C-CCCCceEEeCcccCCCCCCCCCCCCEEEECCCCCC-CHHHHHHHHHHHH
Confidence 99999986433334445555432 2 4689999999999999999985 7999999997 9999999999999
Q ss_pred HHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 297 INNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 297 a~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|.+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||.++...+..+
T Consensus 384 a~~~r~~~~--~l~~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~~a 439 (510)
T 2p3r_A 384 AYQTRDVLE--AMQADSGIRLHALRVDGGA-VANNFLMQFQSDILGTRVERPEVREVTA 439 (510)
T ss_dssp HHHHHHHHH--HHHHHHCCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEEESCCCHHH
T ss_pred HHHHHHHHH--HHHHhcCCCccEEEEeCch-hcCHHHHHHHHHHhCCceEecCCCCcHH
Confidence 999999999 4765 35 7899999998 9999999999999999999887666443
No 7
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.7e-55 Score=470.63 Aligned_cols=331 Identities=14% Similarity=0.168 Sum_probs=266.8
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+++|+||||+|||++|++|+|.+|++ +++.+.+++..+ |.+|+.||||++||+.+..+
T Consensus 23 MM~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I 96 (520)
T 4e1j_A 23 MMGGYILAIDQGTTSTRAIVFDGNQKI-AGVGQKEFKQHF-----PKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDI 96 (520)
T ss_dssp CCSCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred HhhCeEEEEEeCCcceEEEEECCCCCE-EEEEEEeccccc-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccE
Confidence 445799999999999999999999998 999988887654 47899999999999865443
Q ss_pred --------------------------HhhCCchhhhhhceeccC------------------------------------
Q psy224 66 --------------------------ILRLPKDHLKQVKHIEST------------------------------------ 83 (547)
Q Consensus 66 --------------------------i~~~d~r~~~~~~~i~~~------------------------------------ 83 (547)
|.|.|.|+.++++.+...
T Consensus 97 ~~Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~ 176 (520)
T 4e1j_A 97 AAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVR 176 (520)
T ss_dssp EEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHSTTHHHH
T ss_pred EEEEEeCCcceEEEEECCCCeECccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcChHHHHH
Confidence 457788877665554311
Q ss_pred --C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeeccccc
Q psy224 84 --N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWL 157 (547)
Q Consensus 84 --~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~ 157 (547)
. +++++|||.|+|||...+++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++
T Consensus 177 ~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~-- 252 (520)
T 4e1j_A 177 AAKGELCFGTIDTFLIWRLTGGECFCTDATNASRTLLYNIAENAWDDELTEVL--RVPKEMLPEVKDCAADFGVTDPS-- 252 (520)
T ss_dssp HHTTCEEEEEHHHHHHHHHTTTCCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGSCEEECSBSCCCBCCHH--
T ss_pred HhcCCeEecCHHHHHHHHhcCCCeeeecHHHhhhhcccccccCCCCHHHHHHc--CCCHHHCCceecCCCceeeeChh--
Confidence 0 2357899999999932389999999999999999999999999999 59999999999999999999874
Q ss_pred CCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----cccc------ccc--chhH---HHHHhH
Q psy224 158 GINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGAS------MNG--GNCL---ATFVCT 218 (547)
Q Consensus 158 Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~~------~~g--g~~~---~~~~g~ 218 (547)
||++|+||++|++|++|+++|+|+. +|++++|+|||+++.+.+ + .+.. ..+ .+.+ ..++|.
T Consensus 253 ~l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 332 (520)
T 4e1j_A 253 LFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGA 332 (520)
T ss_dssp HHTSCCBEEEECCHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHH
T ss_pred hCCCCCeEEEECCcHHHHHHhCCCCCCCcEEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHH
Confidence 6678999999999999999999997 899999999999765432 1 1110 111 1111 245678
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHH
Q psy224 219 LQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEG 295 (547)
Q Consensus 219 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Eg 295 (547)
+++|+++.+.....++.+++++. + .+++++++|+|||.|+|+|+|++ |.|+|++..| +++||+||++||
T Consensus 333 ~~~W~~~~~~~~~~~~~l~~~a~------~-~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEg 404 (520)
T 4e1j_A 333 AVQWLRDGLKVIKAAPDTGSLAE------S-ADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNT-GPAEFARAALEA 404 (520)
T ss_dssp HHHHHHHTTCCC-----CHHHHH------T-SCTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHh------c-CCCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCC-CHHHHHHHHHHH
Confidence 89999998643333334444432 2 24789999999999999999975 8999999997 999999999999
Q ss_pred HHHHHHHhhhhhhhhhc----C-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 296 IINNIHDIMNRSVLHRS----G-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 296 ia~~~~~~~~~~~l~~~----g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
++|.+|++++ .+++. | +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 405 ia~~~r~~l~--~l~~~~~~~g~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV~~~~~~e~~a 463 (520)
T 4e1j_A 405 VCYQTRDLLE--AMHKDWRRNGNDTVLRVDGGM-VASDWTMQRLSDLLDAPVDRPVILETTA 463 (520)
T ss_dssp HHHHHHHHHH--HHHHHCC-----CCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCCCHHH
T ss_pred HHHHHHHHHH--HHHHhhccCCCcceEEEeCcc-ccCHHHHHHHHHHhCCeEEecCCCccHH
Confidence 9999999999 46654 4 7899999998 9999999999999999999987666443
No 8
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=100.00 E-value=4.1e-55 Score=475.84 Aligned_cols=341 Identities=20% Similarity=0.272 Sum_probs=271.8
Q ss_pred CC-CceEEEEEeCCceeEEEEEec-CCCeeeccccccccc-----CCCC-cCCCCCCccccCHHHHHHH-----------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQA-----NIPS-AHDSNPGAHEQNVRKIVST----------- 61 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~-----~~p~-~~~~~~g~~e~d~~~~~~~----------- 61 (547)
|+ |+|+||||+||||+|++|+|. +|++ +++.+.+|+. ..|. .....+||.||||++||++
T Consensus 1 m~~~~~~lgIDiGTts~Ka~l~d~~~G~i-~~~~~~~~~~~~~~~~~p~~~~~~~~g~~eqdp~~~~~~~~~~i~~~l~~ 79 (572)
T 3jvp_A 1 MSLTKYTIGVDYGTESGRAVLIDLSNGQE-LADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKE 79 (572)
T ss_dssp ----CEEEEEEECSSEEEEEEEETTTCCE-EEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC
T ss_pred CCCCCEEEEEecCCcceEEEEEECCCCeE-EEEEEeccCCccccccCCccccCCCCCcEEECHHHHHHHHHHHHHHHHHH
Confidence 64 689999999999999999998 9998 9999988872 2321 0111289999999999973
Q ss_pred -----------------------------HHH-----------HHhhCCchhhhhhceecc------------C------
Q psy224 62 -----------------------------LHN-----------CILRLPKDHLKQVKHIES------------T------ 83 (547)
Q Consensus 62 -----------------------------~~~-----------~i~~~d~r~~~~~~~i~~------------~------ 83 (547)
+++ +|.|+|.|+.++++.+.. +
T Consensus 80 ~~~~~~~I~~Igis~q~~~~v~~D~~G~pl~~~~~~~~~p~~~ai~W~D~R~~~~~~~l~~~~~~~~~~~~~~tG~~~~~ 159 (572)
T 3jvp_A 80 SGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISS 159 (572)
T ss_dssp ---CCSCEEEEEEEECSSCEEEECTTSCBGGGSSSTTSSGGGSEECTTCCTTHHHHHHHHHHHHHHTCTTGGGGTTCCCS
T ss_pred cCCChhHEEEEEEecCCCcEEEECCCCCCCccCccccccccccceecCccchHHHHHHHHHhccccHHHHHHHhCCCCCc
Confidence 444 578999998665544311 0
Q ss_pred ----------------------CCcchhhHHHHHHhCCCCCccccccccccccccccCCCc-cHHHHHhcCC---CCCCC
Q psy224 84 ----------------------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTW-NEQILRNHEP---SFPLH 137 (547)
Q Consensus 84 ----------------------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W-~~~ll~~~g~---~i~~~ 137 (547)
.+++++|||.|+||| +.++|+|+||+|+||| ++++| |+++|+.+|+ +++++
T Consensus 160 ~~~~~kl~wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG--~~~~d~s~As~t~l~d-~~~~W~~~ell~~~g~~l~~i~~~ 236 (572)
T 3jvp_A 160 EWMIAKVWQILDEAEDVYNRTDQFLEATDWIVSQMTG--KIVKNSCTAGYKAIWH-KREGYPSNEFFKALDPRLEHLTTT 236 (572)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCSEEEEHHHHHHHHHHS--SCCEEHHHHHHHSCCB-TTTBSCCHHHHHTTCGGGTTSTTT
T ss_pred hhHHHHHHHHHHhCHHHHHHhheEecHHHHHHHHhcC--CceeehhhccccceeC-CCCCcCCHHHHHHhCcccccCCHh
Confidence 157899999999999 9999999999999999 99999 9999999952 14567
Q ss_pred CC-CCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhccc-----cc---
Q psy224 138 LL-PKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM-----GA--- 204 (547)
Q Consensus 138 ~L-p~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~-----~~--- 204 (547)
+| |+++++++++|+|++++ +||++|+||++|+||++|+++|+|+. +|++++++|||+++.++++. +.
T Consensus 237 ~L~p~i~~~~~~~G~l~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 316 (572)
T 3jvp_A 237 KLRGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPGKLVMAMGTSICHMLLGEKEQEVEGMCGV 316 (572)
T ss_dssp TTCSCEECTTSEEEECCHHHHHHHTSCTTCEEECCEETTTTHHHHTTCCSSEEEEEEESSSEEEEEEESSCCCCTTCSEE
T ss_pred HCCCccCCcCccccccCHHHHHHhCCCCCCeEEEeCchHHHHHhhCCCCCCCcEEEEecchhheeeecCCCccCCCceee
Confidence 77 79999999999999987 99999999999999999999999997 89999999999887654321 10
Q ss_pred ----ccccchhH---HHHHhHHHHHHHHhCCCCchh--------HHHHHHHhccCcccccccCCCCeEEecCccCcccCC
Q psy224 205 ----SMNGGNCL---ATFVCTLQNWFKEFGFNVPQN--------QIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVI 269 (547)
Q Consensus 205 ----~~~gg~~~---~~~~g~~~~w~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~ 269 (547)
..++.+.+ ..++|.+++||++.++..+.. ..++++.+. +++++++++|++|+|||.|+|+|+
T Consensus 317 ~~~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~g~~~~~~l~~~---a~~~~~g~~gl~~lP~~~Ger~P~ 393 (572)
T 3jvp_A 317 VEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEK---ASQLRPGESGLLALDWWNGNRSIL 393 (572)
T ss_dssp EETSSSTTSEEEEEEESCSHHHHHHHHHHTSBHHHHHHHHHTTBCHHHHHHHH---HTSSCTTSSCCEEECCTTCCCTTT
T ss_pred ccCccCCCcEEEeehhhhHHHHHHHHHHhccchhhHHHHHhcCCCHHHHHHHH---HHhCCCCCCCeEeCCccCCCCCCC
Confidence 01121111 244678889999987531100 112333221 335678999999999999999999
Q ss_pred CCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchh-hcHHHHHHHHHHhCCceE
Q psy224 270 AES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLT-RNHILQHYIERIYGLQLI 343 (547)
Q Consensus 270 ~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~-k~~~~~q~~Ad~l~~~v~ 343 (547)
|++ |.|+|++..| +++||+||++||++|.+|++++ .|++.| +++|+++||| + ||++|+|++||++|+||.
T Consensus 394 ~d~~arg~~~Gl~~~~-t~~~l~RAvlEgia~~~r~~~~--~l~~~g~~~~~i~~~GGg-a~ks~~~~Qi~ADv~g~pV~ 469 (572)
T 3jvp_A 394 VDTELSGMLLGYTLQT-KPEEIYRALLEATAFGTRAIVD--AFHGRGVEVHELYACGGL-PQKNHLLMQIFADVTNREIK 469 (572)
T ss_dssp CCSSCCEEEEEECTTC-CHHHHHHHHHHHHHHHHHHHHH--HHHTTTCCEEEEEEESSH-HHHCHHHHHHHHHHHTSCEE
T ss_pred CCCCcCEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCcCEEEEEcCc-hhhCHHHHHHHHHHHCCeeE
Confidence 985 8999999998 9999999999999999999999 477766 6899999998 9 999999999999999999
Q ss_pred Eecchhhhh
Q psy224 344 VEQDQAMRD 352 (547)
Q Consensus 344 ~~~~~~~~~ 352 (547)
++...+..+
T Consensus 470 ~~~~~e~~a 478 (572)
T 3jvp_A 470 VAASKQTPA 478 (572)
T ss_dssp EBCCSSHHH
T ss_pred ecCCCccHH
Confidence 887665433
No 9
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=100.00 E-value=1.7e-54 Score=464.42 Aligned_cols=329 Identities=16% Similarity=0.255 Sum_probs=270.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
++|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 5 ~~~~lgIDiGtts~k~~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~ 78 (501)
T 3g25_A 5 EKYILSIDQGTTSSRAILFNQKGEI-AGVAQREFKQYF-----PQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAG 78 (501)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred ccEEEEEEeCccceEEEEEcCCCCE-EEEEEeeccccc-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEE
Confidence 4699999999999999999999998 899998886644 58899999999999865443
Q ss_pred ------------------------HhhCCchhhhhhceeccC--------------------------------------
Q psy224 66 ------------------------ILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
|.|+|+|+.++++.+...
T Consensus 79 Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 158 (501)
T 3g25_A 79 IGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAE 158 (501)
T ss_dssp EEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHHHHH
T ss_pred EEEECCcCcEEEEECCCCeECCCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHHHHh
Confidence 568888887666554321
Q ss_pred C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc-cC
Q psy224 84 N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW-LG 158 (547)
Q Consensus 84 ~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~-~G 158 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++. +|
T Consensus 159 ~~~~l~~~~~dyl~~~LTG~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~LP~i~~~~~~~G~~~~~~~~g 236 (501)
T 3g25_A 159 NGDLLFGTIDTWLVWKLSGKAAHITDYSNASRTLMFNIHDLEWDDELLELL--TVPKNMLPEVKASSEVYGKTIDYHFYG 236 (501)
T ss_dssp TTCEEEEEHHHHHHHHHTTTSCCEEEHHHHTTSSSEETTTTEECHHHHHHH--TCCGGGCCEEECSEEEEEECCGGGTTT
T ss_pred cCCeEEecHHHHHHHHhcCCCeeeeeHHHhhcccCeeCCCCCCCHHHHHHh--CcCHHHCCceecCCCceeccchHHhCC
Confidence 0 2458999999999954588999999999999999999999999999 599999999999999999999875 55
Q ss_pred CCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc--c-----ccc------cccc--chhH---HHHHhHH
Q psy224 159 INKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID--E-----MGA------SMNG--GNCL---ATFVCTL 219 (547)
Q Consensus 159 l~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~--~-----~~~------~~~g--g~~~---~~~~g~~ 219 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.. + .+. ..++ .+.+ .+++|.+
T Consensus 237 --~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~ 314 (501)
T 3g25_A 237 --QEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGIDGKVNYALEGSIFVSGSA 314 (501)
T ss_dssp --CCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSTHH
T ss_pred --CCCeEEEECccHHHHHHhCCCCCCCcEEEEccchhheeeecCCccccCCCCeEEEeeEecCCccEEEEecccccHHHH
Confidence 8999999999999999999997 799999999999865432 1 111 0111 1111 1456788
Q ss_pred HHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHH
Q psy224 220 QNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGI 296 (547)
Q Consensus 220 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egi 296 (547)
++|+++.+.....++.++++++. ++ .+++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||+
T Consensus 315 ~~W~~~~~~~~~~~~~l~~~a~~------~~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~RAvlEgi 386 (501)
T 3g25_A 315 IQWLRDGLRMINSAPQSESYATR------VD-STEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGT-EKEHFIRATLESL 386 (501)
T ss_dssp HHHHHHTSCCCSSGGGHHHHHTT------SS-CCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHhh------CC-CCCeEEEecccccCCCCCCCCCCCEEEEccCCCC-CHHHHHHHHHHHH
Confidence 99999986543344555555432 22 358999999999999999875 7999999987 9999999999999
Q ss_pred HHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 297 INNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 297 a~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|.+|++++ .+++ .| +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 387 a~~~~~~~~--~l~~~~g~~~~~i~~~GG~-aks~~~~Qi~Adv~g~pV~~~~~~e~~a 442 (501)
T 3g25_A 387 CYQTRDVME--AMSKDSGIDVQSLRVDGGA-VKNNFIMQFQADIVNTSVERPEIQETTA 442 (501)
T ss_dssp HHHHHHHHH--HHHHHSSCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEEESCCCHHH
T ss_pred HHHHHHHHH--HHHHhcCCCCcEEEEecch-hcCHHHHHHHHHHhCCceEecCCCcchH
Confidence 999999999 4765 55 7899999998 9999999999999999999887666443
No 10
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=2.2e-54 Score=463.32 Aligned_cols=324 Identities=17% Similarity=0.181 Sum_probs=266.8
Q ss_pred CC-CceEEEEEeCCceeEEEEEe-cCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLID-ANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------- 65 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d-~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------- 65 (547)
|+ ++|+||||+|||++|++|+| ++|++ +++.+.++ +++.||||++||+++..+
T Consensus 1 m~~~~~~lgIDiGtts~ka~l~d~~~G~i-~~~~~~~~-----------~g~~e~d~~~~~~~i~~~l~~~~~~~~I~~I 68 (515)
T 3i8b_A 1 MSLRTLVAGVDTSTQSCKVRVTDAETGEL-VRFGQAKH-----------PNGTSVDPSYWWSAFQEAAEQAGGLDDVSAL 68 (515)
T ss_dssp -CCSCEEEEEEECSSEEEEEEEETTTCCE-EEEEEEEC-----------CSSSEECTHHHHHHHHHHHHHTTCSTTEEEE
T ss_pred CCCCcEEEEEEeccccEEEEEEECCCCeE-EEEEEEeC-----------CCCceECHHHHHHHHHHHHHhcCCccCceEE
Confidence 65 68999999999999999999 89998 88887665 367999999999976554
Q ss_pred ----------------------HhhCCchhhhhhceec----c----------------C--------------------
Q psy224 66 ----------------------ILRLPKDHLKQVKHIE----S----------------T-------------------- 83 (547)
Q Consensus 66 ----------------------i~~~d~r~~~~~~~i~----~----------------~-------------------- 83 (547)
|.|+|.|+.++++.+. . .
T Consensus 69 gis~q~~~~v~~D~~G~pl~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~ 148 (515)
T 3i8b_A 69 AVGGQQHGMVILDNQGNVIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVA 148 (515)
T ss_dssp EEEECSSCBEEECTTSCBCSCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHHHHHH
T ss_pred EEeCCcceEEEECCCCCCcCCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHHHHHH
Confidence 5789999765443321 0 0
Q ss_pred --------------CCcchhhHHHHHHhCCCC-------------CccccccccccccccccCCCccHHHHHhc-CCCCC
Q psy224 84 --------------NDLSFQDFIVAMLCDLQE-------------PVMSNQNAASWGYFNCKLSTWNEQILRNH-EPSFP 135 (547)
Q Consensus 84 --------------~~l~~~d~l~~~LtG~~~-------------~~~d~s~As~tgl~d~~~~~W~~~ll~~~-g~~i~ 135 (547)
.+++++|||.|+||| + +++|+|+||+|+|||+++++|++++|+.+ | ++
T Consensus 149 Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG--~~~~~~~~~~~~~~~~td~s~As~t~l~d~~~~~W~~~ll~~~~g--i~ 224 (515)
T 3i8b_A 149 WVAENEPENVKKIAAICLPHDWLSWRIAG--YGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLE--AA 224 (515)
T ss_dssp HHHHHCHHHHTTCSEEECHHHHHHHHHTT--CCCCCTTSCCCGGGCEEEHHHHTTSSSEETTTTEECHHHHHHHHH--HH
T ss_pred HHHHcChHHHHHHheecCHHHHHHHHhcC--CCcccccccccccceeecHHHhhcccCeeCCcCccCHHHHHhhcC--CC
Confidence 157899999999999 6 68999999999999999999999999996 5 77
Q ss_pred -----------CCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhc
Q psy224 136 -----------LHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFID 200 (547)
Q Consensus 136 -----------~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~ 200 (547)
+++||+++++++++|++++++ +||++|+||++|+||++|+++|+| . +|++++|+|||+++.+++
T Consensus 225 ~~~~~~~~~~~~~~LP~i~~~~~~~G~v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g-~~~g~~~~s~GTs~~~~~~~ 303 (515)
T 3i8b_A 225 EGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLG-MAVGDVSISLGTSGVAAAIS 303 (515)
T ss_dssp HCHHHHHHHHHHSBCCEEECTTCCCSSCCCTTTTTTTSTTCCEECCCEEHHHHHHHHTT-CCTTEEEEEESSSEEEEECB
T ss_pred cccccccccchHHHCCCCcCCcCcccCcCHHHHHHhCCCCCCeEEEECchHHHHHhhCC-CCCCcEEEEechhhhhhccc
Confidence 789999999999999999987 999999999999999999999999 6 899999999999987553
Q ss_pred c------cccc----cccchhH----HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcc
Q psy224 201 E------MGAS----MNGGNCL----ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDR 266 (547)
Q Consensus 201 ~------~~~~----~~gg~~~----~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r 266 (547)
+ .+.. ...+.++ ..++|.+++|+++.+. . +++.+++++. ++++++++++|+|||.|+|
T Consensus 304 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~gg~~l~w~~~~~~-~-~~~~l~~~a~------~~~~g~~gl~~lP~~~Ger 375 (515)
T 3i8b_A 304 ENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALG-V-DYDELAKLAF------ASKPGANGITLVPYFDGER 375 (515)
T ss_dssp SSCCCCTTSCSEEEECSSSSEEEEEEESCSTHHHHHHHHHHT-C-CHHHHHHHHH------HSCTTGGGCEEECCTTCBT
T ss_pred CccccCCCCcEEeeecCCCCEEEeeecccHHHHHHHHHHHhC-C-CHHHHHHHHH------hCCCCCCCeEEecCCCCCc
Confidence 2 1110 0112111 2446778899999753 2 3445555543 3567889999999999999
Q ss_pred cCCCC--CceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCce
Q psy224 267 HVIAE--SASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQL 342 (547)
Q Consensus 267 ~p~~~--~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v 342 (547)
+|++. +|.|+|++..|++++|++||++||++|.+|++++ .+++.| +++|+++||+ +||++|+|++||++|+||
T Consensus 376 ~P~~~~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~--~l~~~g~~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV 452 (515)
T 3i8b_A 376 TPNRPNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLE--LIRSLGASITRILLIGGG-AKSEAIRTLAPSILGMDV 452 (515)
T ss_dssp TTTBTTCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCCCEEEEESGG-GGCHHHHHHHHHHHTSCE
T ss_pred CCCCcCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCCEEEEECch-hcCHHHHHHHHHHhCCce
Confidence 99762 3899999998658999999999999999999999 477766 6899999998 999999999999999999
Q ss_pred EEecchhhhh
Q psy224 343 IVEQDQAMRD 352 (547)
Q Consensus 343 ~~~~~~~~~~ 352 (547)
.++...+..+
T Consensus 453 ~~~~~~e~~a 462 (515)
T 3i8b_A 453 TRPATDEYVA 462 (515)
T ss_dssp EEECCCCHHH
T ss_pred EecCCcccHH
Confidence 9987666443
No 11
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=100.00 E-value=6.3e-54 Score=458.54 Aligned_cols=324 Identities=19% Similarity=0.252 Sum_probs=262.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-------------------
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------- 65 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------- 65 (547)
++||||+|||++|++|+|.+|++ ++..+.+++... +.+|+.|||+++||+.+..+
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~~-l~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~i~~Igis 74 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEV-VAAQTEKLTVSR-----PHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIA 74 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEE
T ss_pred CEEEEEecCcccEEEEECCCCCE-EEEEEecccccc-----CCCCCEeECHHHHHHHHHHHHHHHHHhCCccceEEEEEc
Confidence 47999999999999999999998 999988886544 58899999999999865544
Q ss_pred -------------------HhhCCchhhhhhceeccC------------------------------------CCcchhh
Q psy224 66 -------------------ILRLPKDHLKQVKHIEST------------------------------------NDLSFQD 90 (547)
Q Consensus 66 -------------------i~~~d~r~~~~~~~i~~~------------------------------------~~l~~~d 90 (547)
|.|.|.|+.++++.+... .+++++|
T Consensus 75 ~~~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~l~~~d 154 (484)
T 2itm_A 75 GQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKD 154 (484)
T ss_dssp ECSSCBEEECTTCCBCSCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEEECHHH
T ss_pred CCcCcEEEECCCcCCCcccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhheeCcHH
Confidence 457788876655543210 1468999
Q ss_pred HHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEe
Q psy224 91 FIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINV 167 (547)
Q Consensus 91 ~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~ 167 (547)
||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++++ +||+ |+||++
T Consensus 155 ~l~~~LTG--~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lp~i~~~~~~~G~~~~~~a~~~Gl~-g~pV~~ 229 (484)
T 2itm_A 155 YLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQAC--DLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVA 229 (484)
T ss_dssp HHHHHHHS--CCEEEHHHHHTTTCEETTTTEECHHHHHTT--TCCGGGSCEEECTTSEEEECCHHHHHHHTSC-CCEEEC
T ss_pred HHHHHHhC--CceeeHHHhhccccccCCCCCcCHHHHHHc--CCCHHHCCCccCCcceeeccCHHHHHHhCCC-CCeEEE
Confidence 99999999 999999999999999999999999999999 599999999999999999999886 9999 999999
Q ss_pred cCCchhhhhhccccc-CCCcEEEeccchhhhhhccc------cc------ccccchhH---HHHHhHHHHHHHHhCCCCc
Q psy224 168 ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM------GA------SMNGGNCL---ATFVCTLQNWFKEFGFNVP 231 (547)
Q Consensus 168 g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~------~~------~~~gg~~~---~~~~g~~~~w~~~~~~~~~ 231 (547)
|+||++|+++|+|+. +|++++|+|||+++.+..+. .. ..++.+.+ ..++|.+++|+++.+.. .
T Consensus 230 g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-~ 308 (484)
T 2itm_A 230 GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-S 308 (484)
T ss_dssp CEEHHHHHHHHHTCCSTTCEEEEESSSEEEEEECSSCCCCCSSSCEEEECSSTTCEEEEEEECCHHHHHHHHHHHTTC-C
T ss_pred EchHHHHHHHhCCCCCCCcEEEEccchheeEEecCCCccCcccceEEeecccCCeeeeeehhhhHHHHHHHHHHhcCc-c
Confidence 999999999999998 89999999999988654320 00 01221111 24578889999997632 2
Q ss_pred hhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q psy224 232 QNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSV 308 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~ 308 (547)
.++...+. +++.++++++++|+|||.|+|.|+|++ |.|+|++..+ +++|++||++||++|.+|++++ .
T Consensus 309 ~~~~~~~~------a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~-~~~~~~rAvlEgia~~~~~~~~--~ 379 (484)
T 2itm_A 309 NVPALIAA------AQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQH-GPNELARAVLEGVGYALADGMD--V 379 (484)
T ss_dssp SHHHHHHH------GGGCCTTSCCCEEEEEEC--------CCEEEEEEEEETTC-CHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred cHHHHHHH------HhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHH--H
Confidence 22333222 234567899999999999999999986 7999999987 9999999999999999999999 4
Q ss_pred hhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 309 LHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 309 l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
+++.| +++|+++||+ +||+.|+|++||++|+||.+++..+.
T Consensus 380 l~~~g~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~ 422 (484)
T 2itm_A 380 VHACGIKPQSVTLIGGG-ARSEYWRQMLADISGQQLDYRTGGDV 422 (484)
T ss_dssp HHTTTCCCSCEEEESGG-GCCHHHHHHHHHHHCCCEEEESCTTS
T ss_pred HHHcCCCcceEEEEecc-ccCHHHHHHHHHHhCCeEEeCCCCCc
Confidence 76655 6899999998 99999999999999999999887664
No 12
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=6.1e-53 Score=452.10 Aligned_cols=328 Identities=19% Similarity=0.259 Sum_probs=270.4
Q ss_pred CCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH----------------
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC---------------- 65 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~---------------- 65 (547)
+|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 1 M~~~~lgiDiGtt~~k~~l~d~~g~~-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~ 74 (497)
T 2zf5_O 1 MEKFVLSLDEGTTSARAIIFDRESNI-HGIGQYEFPQHY-----PRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIA 74 (497)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCCE-EEEEEEECCCBC-----CSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CCcEEEEEecCCchhEEEEECCCCCE-EEEEEeccceec-----CCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEE
Confidence 15689999999999999999999998 999999987544 57899999999999865443
Q ss_pred ------------------------HhhCCchhhhhhceecc---------C----------------------------C
Q psy224 66 ------------------------ILRLPKDHLKQVKHIES---------T----------------------------N 84 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~---------~----------------------------~ 84 (547)
|.|.|.|+.++++.+.. + .
T Consensus 75 ~Igis~~~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 154 (497)
T 2zf5_O 75 AIGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEK 154 (497)
T ss_dssp EEEEEECSSCEEEECTTCCBSSCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHHT
T ss_pred EEEEecCCCcEEEECCCCCCcccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHhc
Confidence 46788887765543321 0 1
Q ss_pred ----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCC
Q psy224 85 ----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGIN 160 (547)
Q Consensus 85 ----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~ 160 (547)
+++++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|+++++.+|
T Consensus 155 ~~~~~~~~~d~l~~~LTG--~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~g-- 228 (497)
T 2zf5_O 155 GEVMFGTVDTFLIYRLTG--EHVTDYSNASRTMLFNIKKLDWDDELLELF--DIPESVLPEVRESSEVYGYTKKELLG-- 228 (497)
T ss_dssp TCCEEEEHHHHHHHHHHS--CCEEEHHHHTTSSSEETTTTEECHHHHHHT--TCCGGGCCEEECSEEEEEECCHHHHS--
T ss_pred CCCEEEcHHHHHHHHHhC--CeeeeHHHhhhhcCccCCCCCcCHHHHHHc--CcCHHHCCCcCCCCCeeeecCHHHcC--
Confidence 45789999999999 999999999999999999999999999999 59999999999999999999988788
Q ss_pred CCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhccc------ccc------ccc-chhH----HHHHhHHHHH
Q psy224 161 KDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM------GAS------MNG-GNCL----ATFVCTLQNW 222 (547)
Q Consensus 161 ~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~------~~~------~~g-g~~~----~~~~g~~~~w 222 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.++. +.. ..+ +.++ ..++|.+++|
T Consensus 229 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w 308 (497)
T 2zf5_O 229 AEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGSIFVTGAAVQW 308 (497)
T ss_dssp SCCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEEESCSHHHHHH
T ss_pred CCCeEEEEccHHHHHHHhCCCCCCCcEEEEcchhheeeEECCCCccCCCCcEEEEEEEcCCCCEEEEechhhhHHHHHHH
Confidence 8999999999999999999997 89999999999998665321 110 111 0111 1346788999
Q ss_pred HHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHHHH
Q psy224 223 FKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia~~ 299 (547)
+++.+.....++.+++++. ++ +++++++|+|||.|+|+|+|++ |.|+|++..| +++|++||++||++|.
T Consensus 309 ~~~~~~~~~~~~~l~~~a~------~~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvlEgia~~ 380 (497)
T 2zf5_O 309 LRDGIKIIKHASETEELAT------KL-ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGT-GREHLARATLEAIAYL 380 (497)
T ss_dssp HHHTSCCCSCGGGHHHHHT------TS-SSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHh------hC-CCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence 9997643333344444432 22 3688999999999999999975 7999999987 9999999999999999
Q ss_pred HHHhhhhhhhhhc-CCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 300 IHDIMNRSVLHRS-GINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 300 ~~~~~~~~~l~~~-g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
+|++++. +++. .+++|+++||+ +||+.|+|++||++|+||.++...+..+
T Consensus 381 ~~~~l~~--l~~~~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~~a 431 (497)
T 2zf5_O 381 TRDVVDE--MEKLVQIKELRVDGGA-TANDFLMQFQADILNRKVIRPVVKETTA 431 (497)
T ss_dssp HHHHHHH--HTTTSCCCCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHH--HHhcCCcceEEEeCcc-ccCHHHHHHHHhhcCCeEEEcCCCcchH
Confidence 9999994 6654 47899999998 9999999999999999999987766443
No 13
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-52 Score=450.04 Aligned_cols=328 Identities=18% Similarity=0.257 Sum_probs=268.0
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 1 M~~~lgiDiGtT~~k~~l~d~~g~i-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~ 74 (495)
T 2dpn_A 1 MAFLLALDQGTTSSRAILFTLEGRP-VAVAKREFRQLY-----PKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLA 74 (495)
T ss_dssp --CEEEEEECSSEEEEEEECTTSCE-EEEEEEECCEEC-----SSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred CcEEEEEeeCCcceEEEEECCCCCE-EEEEEEeeceec-----CCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEE
Confidence 3689999999999999999999998 899998886544 47899999999999865444
Q ss_pred ------------------------HhhCCchhhhhhceeccC--------------------------------------
Q psy224 66 ------------------------ILRLPKDHLKQVKHIEST-------------------------------------- 83 (547)
Q Consensus 66 ------------------------i~~~d~r~~~~~~~i~~~-------------------------------------- 83 (547)
|.|.|.|+.++++.+...
T Consensus 75 Igis~~~~~~~~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 154 (495)
T 2dpn_A 75 LGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAE 154 (495)
T ss_dssp EEEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHHHH
T ss_pred EEEeCCCccEEEEECCCCcCCccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHHh
Confidence 457788876555443210
Q ss_pred C----CcchhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCC
Q psy224 84 N----DLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGI 159 (547)
Q Consensus 84 ~----~l~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl 159 (547)
. +++++|||.|+|||..++++|+|+||+|+|||+++++|++++|+.+ +|++++||+++++++++|+++++.+|
T Consensus 155 ~~~~~~~~~~d~l~~~LTG~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~G- 231 (495)
T 2dpn_A 155 GGGVAFGTVDTWLIWNLTGGKVHATDPTNASRTLLFNLHTLAWDPELLEAL--GIPAALLPEVRPSDGDFGETLPELLG- 231 (495)
T ss_dssp HTCEEEECHHHHHHHHHTTTSCCEECHHHHTTSSSEETTTTEECHHHHHHT--TCCSTTCCEECCTTSCCCBCCHHHHS-
T ss_pred cCCcEEECHHHHHHHHhcCCCeEEEehHHhHhhcCccCccCCcCHHHHHHc--CCCHHHCCCccCCCCeeEeccHHHcC-
Confidence 1 4578999999999965689999999999999999999999999999 59999999999999999999988788
Q ss_pred CCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----cc------cccc--chhH---HHHHhHHH
Q psy224 160 NKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----GA------SMNG--GNCL---ATFVCTLQ 220 (547)
Q Consensus 160 ~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~~------~~~g--g~~~---~~~~g~~~ 220 (547)
+|+||++|++|++|+++|+|+. +|++++|+|||+++.+.+. . +. ...+ .+.+ ..++|.++
T Consensus 232 -~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 310 (495)
T 2dpn_A 232 -APVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAV 310 (495)
T ss_dssp -SCCBEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHH
T ss_pred -CCCeEEEECcHHHHHHHhCCCCCCCcEEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEEEechHHhHHHHH
Confidence 8999999999999999999997 8999999999998865531 1 10 0111 1111 23467889
Q ss_pred HHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHHHHHH
Q psy224 221 NWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALCEGII 297 (547)
Q Consensus 221 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~Egia 297 (547)
+|+++ +.....++.+++++.. + +++++++|+|||.|+|+|+|++ |.|+|++..+ +++|++||++||++
T Consensus 311 ~w~~~-~~~~~~~~~l~~~a~~------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~~~rAvlEgia 381 (495)
T 2dpn_A 311 GWLKE-VGLIRESAEVEALAAS------V-EDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGT-SRAHLARAALEGVA 381 (495)
T ss_dssp HHHHH-TTSSSSTTTHHHHHHT------C-SCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHHHHHHHHHH
T ss_pred HHHHH-cCCccCHHHHHHHHhh------C-CCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCC-CHHHHHHHHHHHHH
Confidence 99999 5433333444444322 2 3578999999999999999975 7999999987 99999999999999
Q ss_pred HHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 298 NNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 298 ~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
|.+|.+++ .+++ .| +++|+++||+ +||+.|+|++||++++||.+....+..+
T Consensus 382 ~~~~~~~~--~l~~~~g~~~~~i~~~GG~-a~n~~~~q~~Adv~g~pV~~~~~~e~~a 436 (495)
T 2dpn_A 382 FQVRDVVL--AMEEEAGVRLKVLKADGGM-AQNRLFLKIQADLLGVPVAVPEVTETTA 436 (495)
T ss_dssp HHHHHHHH--HHHTTTSCCCCCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHH--HHHHhcCCCCcEEEEeccc-ccCHHHHHHHHHHhCCeeEecCCcccHH
Confidence 99999999 4655 45 6799999998 9999999999999999999887766444
No 14
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=100.00 E-value=2e-52 Score=448.71 Aligned_cols=326 Identities=18% Similarity=0.261 Sum_probs=266.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+++||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 3 m~~~lgIDiGtT~~k~~l~d~~g~i-~~~~~~~~~~~~-----~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i 76 (503)
T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEELNI-VHSNNLNHEQKC-----LKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVII 76 (503)
T ss_dssp CEEEEEEEECSSEEEEEEEETTCCE-EEEEEEECCCBC-----CSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred ccEEEEEEeCCcceEEEEECCCCCE-EEEEEEeeeeec-----CCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccce
Confidence 5789999999999999999999998 999998886544 57899999999999855433
Q ss_pred --------------------------HhhCCchhhhhhceecc----------C--------------------------
Q psy224 66 --------------------------ILRLPKDHLKQVKHIES----------T-------------------------- 83 (547)
Q Consensus 66 --------------------------i~~~d~r~~~~~~~i~~----------~-------------------------- 83 (547)
|.|.|.|+.++++.+.. +
T Consensus 77 ~~Igis~~~~~~~~~D~~~G~~l~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~ 156 (503)
T 2w40_A 77 KCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQK 156 (503)
T ss_dssp EEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHHHH
T ss_pred EEEEEcCCcceEEEEECCCCcCCccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHH
Confidence 24566676544433211 0
Q ss_pred --C----CcchhhHHHHHHhCCCC-CccccccccccccccccCCCccHHHHHhcCCCCC-CCCCCCcccCCccceeeccc
Q psy224 84 --N----DLSFQDFIVAMLCDLQE-PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFP-LHLLPKIQPSGTIVGTLTRD 155 (547)
Q Consensus 84 --~----~l~~~d~l~~~LtG~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~-~~~Lp~i~~~~~~~G~v~~~ 155 (547)
. +++++|||.|+||| . +++|+|+||+|+|||+++++||+++|+.+ +|+ +++||+++++++++|+++++
T Consensus 157 ~~~~~~~~~~~~d~l~~~LTG--~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~~lP~i~~~~~~~G~~~~~ 232 (503)
T 2w40_A 157 IDDGTAVIGNINTWLIFNLTK--GNCYTDVTNASRTLLMDINTLQWDEKMCKIF--NITNMSVLPEIKSNCSNFGLVKSE 232 (503)
T ss_dssp HHTTCEEEEEHHHHHHHHHHT--SCCEEEHHHHTTTTCBCTTTCSBCHHHHHHT--TCCCGGGSCEEECSEEEEEECCCT
T ss_pred HhcCCeEEECHHHHHHHHHcC--CCccccHHHhhhhcCccCCCCccCHHHHHHc--CCChHHHCCCccCCcCceeeccHH
Confidence 1 45789999999999 5 99999999999999999999999999999 599 99999999999999999988
Q ss_pred ccCCCC--CCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----c------ccccc----chhH---
Q psy224 156 WLGINK--DTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----G------ASMNG----GNCL--- 212 (547)
Q Consensus 156 ~~Gl~~--g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~------~~~~g----g~~~--- 212 (547)
.+| + |+||++|++|++|+++|+|+. +|++++|+|||+++.++++ . + ...++ .+.+
T Consensus 233 ~~g--~~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~ 310 (503)
T 2w40_A 233 HVP--DYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGS 310 (503)
T ss_dssp TSG--GGTTCEEEEEEEHHHHHHHHTTCCSTTCEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEE
T ss_pred HcC--CCCCceEEEECchHHHHHHhCCCCCCCcEEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEech
Confidence 788 6 999999999999999999997 8999999999999876531 1 1 01122 1111
Q ss_pred HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHH
Q psy224 213 ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLF 289 (547)
Q Consensus 213 ~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ 289 (547)
..++|.+++|+++ +.....++.+++++.. + ++++|++|+|||.|+|.|+|++ |.|+|++..| +++|++
T Consensus 311 ~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~------~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~ 381 (503)
T 2w40_A 311 IGTAGSGVSWLLK-NKLIDDPSEASDIMEK------C-ENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNT-ERSHIV 381 (503)
T ss_dssp ESCSHHHHHHHHH-TTSSSCGGGHHHHHHH------C-CSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTC-CHHHHH
T ss_pred hhhhHhHHHHHHH-hCCcCCHHHHHHHHhh------C-CCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCC-CHHHHH
Confidence 2446788999999 6433334444444332 2 3688999999999999999975 7999999997 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-cC--C-cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 290 VALCEGIINNIHDIMNRSVLHR-SG--I-NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~-~g--~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++||++|.+|++++ .+++ .| + ++|+++||+ +||+.|+|++||++++||.+....+..+
T Consensus 382 rAvlEgia~~~~~~~~--~l~~~~g~~~~~~i~~~GG~-a~s~~~~Q~~Adv~g~pV~~~~~~e~~a 445 (503)
T 2w40_A 382 RALLEGIAFQLNEIVD--SLTSDMGIEMLHVLRCDGGM-TKNKPFMQFNSDIINTKIEVSKYKEVTS 445 (503)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHTCSCCSCEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHhcCCCccceEEEeCcc-ccCHHHHHHHHHHHCCeEEecCCCcchH
Confidence 9999999999999999 4655 45 6 889999998 9999999999999999999887666443
No 15
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=100.00 E-value=3.1e-53 Score=457.84 Aligned_cols=332 Identities=14% Similarity=0.138 Sum_probs=263.0
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCc------CCCCCCccccCHH-HHHHHH-------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA------HDSNPGAHEQNVR-KIVSTL------------- 62 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~------~~~~~g~~e~d~~-~~~~~~------------- 62 (547)
|+|+||||+||||+|++|+|.+|++ +++++.+|+..+|.. ....+|+.||||+ .||+++
T Consensus 9 ~~~~lgID~GTts~Ka~l~d~~G~v-v~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~l~~~~~~ 87 (538)
T 4bc3_A 9 RRCCLGWDFSTQQVKVVAVDAELNV-FYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFD 87 (538)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCE-EEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEcCcCEEEEEECCCCCE-EEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 6799999999999999999999998 999999987655421 1112344678997 466522
Q ss_pred ----------------------------------------------HHHHhhCCchhhhhhceeccC-------------
Q psy224 63 ----------------------------------------------HNCILRLPKDHLKQVKHIEST------------- 83 (547)
Q Consensus 63 ----------------------------------------------~~~i~~~d~r~~~~~~~i~~~------------- 83 (547)
+++|.|+|+|+.++++.+...
T Consensus 88 ~~~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~~~l~~~~~~~~~~~~~tG~ 167 (538)
T 4bc3_A 88 FSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGS 167 (538)
T ss_dssp GGGEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHHHHHHHHHTSHHHHHHHHSS
T ss_pred hHHeEEEEecccceeEEEECCCccccccccccccchhhhccccccccCCcccccCcHHHHHHHHHHhhCcHHHHHHHHCC
Confidence 234678999987665544210
Q ss_pred --------------------------CCcchhhHHHHHHhCCCCCc-cccccccccccccccCCCccHHHHHhcCCCCC-
Q psy224 84 --------------------------NDLSFQDFIVAMLCDLQEPV-MSNQNAASWGYFNCKLSTWNEQILRNHEPSFP- 135 (547)
Q Consensus 84 --------------------------~~l~~~d~l~~~LtG~~~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~- 135 (547)
.+++++|||.|+||| +.. +|+|+||+|+|||+++++||+++|+.+ +++
T Consensus 168 ~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG--~~~~td~s~As~t~l~d~~~~~W~~~ll~~~--gi~~ 243 (538)
T 4bc3_A 168 RAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLG--SYSPIDYSDGSGMNLLQIQDKVWSQACLGAC--APHL 243 (538)
T ss_dssp CCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHT--SCCCCBHHHHTTSSCEETTTTEECHHHHHHH--CTTH
T ss_pred CCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhC--CCcccccchhhcccccccccCCCCHHHHHHh--CccH
Confidence 157899999999999 887 999999999999999999999999999 487
Q ss_pred CCCCCCcccCCccceeecccc---cCCCCCCeEEecCCchhhhhhcccccCCCcEEEeccchhhhhhcc------ccc--
Q psy224 136 LHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDE------MGA-- 204 (547)
Q Consensus 136 ~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~g~~~~~~~is~GTs~~~~~~~~------~~~-- 204 (547)
+++||+++++++++|+|++++ +||++||||++|+||++|+++|++..+|++++|+|||+++.++++ .+.
T Consensus 244 ~~~LP~i~~~~~~~G~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~ 323 (538)
T 4bc3_A 244 EEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIF 323 (538)
T ss_dssp HHHHCCCBCSSCEEEECCHHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCTTCEEEEESSSEEEEEEESSCCCCSSSEEE
T ss_pred HHHCCCcccccccccccCHHHHHHhCCCCCCeEEEecccHHhhhhccccCCCcEEEEeccchheEEecCCCCCCCCcceE
Confidence 789999999999999999987 999999999999999999999996448999999999999876532 110
Q ss_pred --ccccchhH----HHHHhHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEE--
Q psy224 205 --SMNGGNCL----ATFVCTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVT-- 276 (547)
Q Consensus 205 --~~~gg~~~----~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~-- 276 (547)
..+++.++ ..++|.+++|+++.+.. ..++.+++++. +++++++|++|+|||.|+|.|+ .+|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~------~~~~g~~gl~~lp~~~Ger~P~-~~G~~~~~ 395 (538)
T 4bc3_A 324 CNPVDSQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQ------STEMGNGGNLGFYFDVMEITPE-IIGRHRFN 395 (538)
T ss_dssp EETTEEEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHH------TSCTTGGGCEEEEESSCCSSSC-CCEEEEEC
T ss_pred EeecCCCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHh------cCCCCCCCeEEeecCCCCcCCC-CCceeeec
Confidence 01122111 13456778999997542 33445555433 4567889999999999999997 346664
Q ss_pred ----ecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 277 ----HITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 277 ----gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
|++. + +++|++||++||++|.+|.+++. +++.+ +++|+++||| +||++|+|++||++|+||.++...+.
T Consensus 396 ~~~~g~~~-~-~~~~l~RAvlEgia~~~r~~~~~--l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv~g~pV~~~~~~e~ 470 (538)
T 4bc3_A 396 TENHKVAA-F-PGDVEVRALIEGQFMAKRIHAEG--LGYRVMSKTKILATGGA-SHNREILQVLADVFDAPVYVIDTANS 470 (538)
T ss_dssp TTSCEESC-C-CHHHHHHHHHHHHHHHHHHHHHH--TTCCCCTTCCEEEEEGG-GGCHHHHHHHHHHHTSCEEECCCTTH
T ss_pred cccccccC-C-CHHHHHHHHHHHHHHHHHHHHHH--hhhcCCCCCeEEEEcch-hcCHHHHHHHHHHhCCceEecCCCCc
Confidence 3443 4 89999999999999999999994 66554 6899999998 99999999999999999999877664
Q ss_pred hh
Q psy224 351 RD 352 (547)
Q Consensus 351 ~~ 352 (547)
.+
T Consensus 471 ~a 472 (538)
T 4bc3_A 471 AC 472 (538)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 16
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=100.00 E-value=6.8e-53 Score=457.06 Aligned_cols=333 Identities=15% Similarity=0.240 Sum_probs=262.9
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHH------------------
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST------------------ 61 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~------------------ 61 (547)
|+ |+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||++
T Consensus 1 m~~~~~~lgIDiGtts~ka~l~d~~G~i-l~~~~~~~~~~~-----p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (554)
T 3l0q_A 1 MSLASYFIGVDVGTGSARAGVFDLQGRM-VGQASREITMFK-----PKADFVEQSSENIWQAVCNAVRDAVNQADINPIQ 74 (554)
T ss_dssp ---CCEEEEEEECSSEEEEEEEETTSCE-EEEEEEECCCEE-----EETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCCCcEEEEEEECcccEEEEEECCCCCE-EEEEEEeccccc-----CCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 64 7899999999999999999999998 999998886544 4789999999999983
Q ss_pred ---------------------H---------HHHHhhCCchhhhhhceeccC----------------------------
Q psy224 62 ---------------------L---------HNCILRLPKDHLKQVKHIEST---------------------------- 83 (547)
Q Consensus 62 ---------------------~---------~~~i~~~d~r~~~~~~~i~~~---------------------------- 83 (547)
+ +++|.|+|+|+.++++.+...
T Consensus 75 I~~Igis~~~~~v~~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~ 154 (554)
T 3l0q_A 75 VKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHM 154 (554)
T ss_dssp EEEEEEEECSCEEEEETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHC
T ss_pred EEEEEEcCCCceEEECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhC
Confidence 3 355678999987766554310
Q ss_pred --------CCcchhhHHHHHHhCCCCCcccccccccccc--ccccCCCccHHHHHhcCCCCCCC------CCC-CcccCC
Q psy224 84 --------NDLSFQDFIVAMLCDLQEPVMSNQNAASWGY--FNCKLSTWNEQILRNHEPSFPLH------LLP-KIQPSG 146 (547)
Q Consensus 84 --------~~l~~~d~l~~~LtG~~~~~~d~s~As~tgl--~d~~~~~W~~~ll~~~g~~i~~~------~Lp-~i~~~~ 146 (547)
.+++++|||.|+||| +. ++|+||.+++ ||+++++||+++|+.+ +|++. +|| ++++++
T Consensus 155 Pe~~~~~~~~~~~~dyl~~~LTG--~~--~~s~as~t~~~~~d~~~~~W~~~ll~~~--gi~~~~~~~~~~Lp~~i~~~~ 228 (554)
T 3l0q_A 155 PNTWSNVGHLFDLPDFLTWRATK--DE--TRSLCSTVCKWTYLGHEDRWDPSYFKLV--GLADLLDNNAAKIGATVKPMG 228 (554)
T ss_dssp HHHHHHEEEEEEHHHHHHHHHHS--CC--CEEHHHHHHHSCCBTTTTBCCHHHHHHH--TCGGGGHHHHTTTCSCEECTT
T ss_pred hHHHHHhceEEcHHHHHHHHHhC--Cc--cccccchhhccccccccCCCCHHHHHHc--CCccccchhHHhCCCcccCCc
Confidence 157899999999999 66 3677777764 7889999999999999 48752 899 699999
Q ss_pred ccce-eecccc---cCCCCCCeEEecCCchhhhhhcc-ccc--CC-------CcEEEeccchhhhhhccc-----cc---
Q psy224 147 TIVG-TLTRDW---LGINKDTPINVALGDLQCSVLAT-LQY--HS-------DAIVNISTSAQIAFIDEM-----GA--- 204 (547)
Q Consensus 147 ~~~G-~v~~~~---~Gl~~g~~V~~g~~D~~aa~~g~-g~~--~~-------~~~is~GTs~~~~~~~~~-----~~--- 204 (547)
+++| +|++++ +||++|+||++|++|++|+++|+ |+. +| ++.+|+|||+++.++++. +.
T Consensus 229 ~~~G~~lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 308 (554)
T 3l0q_A 229 APLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSRSAHFISGIWGP 308 (554)
T ss_dssp CBCTTSSCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTSCCCCTTTEEEEECSSSEEEEEEESSCCCCTTSEEE
T ss_pred CeeCcccCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCCccccccceEEEEecchheeeeecCCccccCCccee
Confidence 9999 899886 99999999999999999999996 664 66 688999999988765321 10
Q ss_pred ----ccccchhH---HHHHhHHHHHHHHhCCCCchh---------HHHHHHHhccCccccccc-------CCCCeEEecC
Q psy224 205 ----SMNGGNCL---ATFVCTLQNWFKEFGFNVPQN---------QIWAKLINASDPINHITR-------HHSTLRVTPT 261 (547)
Q Consensus 205 ----~~~gg~~~---~~~~g~~~~w~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~~~~~~P~ 261 (547)
..++.+.+ ..++|.+++|+++.+....+. ..++.+.+. ++++++ ++++++|+||
T Consensus 309 ~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~gl~flP~ 385 (554)
T 3l0q_A 309 YYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYI---LRQMAGEPENIAFLTNDIHMLPY 385 (554)
T ss_dssp EETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHH---HHHHHSSGGGGGGGGTTCCEECC
T ss_pred ecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHH---HHhcCCCCCccccccCceEEccc
Confidence 01221111 245778899999985321100 112222111 122233 3799999999
Q ss_pred ccCcccCCCCC---ceEEecccCCCCHHHH---HHHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHH
Q psy224 262 LLGDRHVIAES---ASVTHITIQNLGVTKL---FVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHY 333 (547)
Q Consensus 262 ~~G~r~p~~~~---~~~~gl~~~~~~~~~l---~ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~ 333 (547)
|.|+|+|+|++ |.|+|++..| +++|| +||++||++|++|++++ .+++.| +++|+++||+ +||++|+|+
T Consensus 386 ~~Ger~P~~d~~arg~~~Gl~~~~-~~~~l~r~~rAvlEgia~~~r~~~e--~l~~~g~~~~~i~~~GG~-aks~~~~Qi 461 (554)
T 3l0q_A 386 FHGNRSPRANPNLTGIITGLKLST-TPEDMALRYLATIQALALGTRHIIE--TMNQNGYNIDTMMASGGG-TKNPIFVQE 461 (554)
T ss_dssp TTCBCSSSCBTTCCCEECSCCSCC-SHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTCCCCEEEEESGG-GGCHHHHHH
T ss_pred ccCCCCCCCCCCCcEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCCCEEEEeCcc-ccCHHHHHH
Confidence 99999999985 8999999997 99999 89999999999999999 477766 7899999998 999999999
Q ss_pred HHHHhCCceEEecchhhhh
Q psy224 334 IERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 334 ~Ad~l~~~v~~~~~~~~~~ 352 (547)
+||++|+||.++...+..+
T Consensus 462 ~ADv~g~pV~~~~~~e~~a 480 (554)
T 3l0q_A 462 HANATGCAMLLPEESEAML 480 (554)
T ss_dssp HHHHHCCEEEEESCSCHHH
T ss_pred HHHhhCCeEEecCCCcchH
Confidence 9999999999987666543
No 17
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=100.00 E-value=6.9e-52 Score=444.42 Aligned_cols=327 Identities=17% Similarity=0.206 Sum_probs=267.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH------------------
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC------------------ 65 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~------------------ 65 (547)
+|+||||+|||++|++|+|.+|++ +++.+.+++... +.+|+.||||++||+.+..+
T Consensus 2 ~~~lgiDiGtts~k~~l~d~~G~i-~~~~~~~~~~~~-----p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~I 75 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDHSGEI-YSTGQLEHDQIF-----PRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAV 75 (504)
T ss_dssp CEEEEEEECSSEEEEEEECTTSCE-EEEEEEECCCBC-----SSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CEEEEEecCCcceEEEEECCCCCE-EEEEEEecceec-----CCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 489999999999999999999998 999998887544 57899999999999865443
Q ss_pred -----------------------HhhCCchhhhhhceecc----C----------------------------------C
Q psy224 66 -----------------------ILRLPKDHLKQVKHIES----T----------------------------------N 84 (547)
Q Consensus 66 -----------------------i~~~d~r~~~~~~~i~~----~----------------------------------~ 84 (547)
|.|.|.|+.++++.+.. . .
T Consensus 76 gis~~g~~~v~vD~~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~ 155 (504)
T 2d4w_A 76 GITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEK 155 (504)
T ss_dssp EEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHHHHH
T ss_pred EEeCCCCeEEEEECCCCCCccccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHHHhc
Confidence 45778887665554431 0 1
Q ss_pred ----CcchhhHHHHHHhCCCC---CccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecc-cc
Q psy224 85 ----DLSFQDFIVAMLCDLQE---PVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTR-DW 156 (547)
Q Consensus 85 ----~l~~~d~l~~~LtG~~~---~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~-~~ 156 (547)
+++++|||.|+|||..+ +++|+|+||+|+|||+++++||+++|+.+ +|++++||+++++++++|++++ +.
T Consensus 156 ~~~~~~~~~d~l~~~LTG~~~~~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~~~ 233 (504)
T 2d4w_A 156 GDLLFGNTDTWVLWNMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADM--GIPLSMLPDIRSSSEVYGHGRPRGL 233 (504)
T ss_dssp TCEEEECHHHHHHHHHTTTTTTCCCEEEHHHHTTTTCEETTTTEECHHHHHHT--TCCGGGSCEEECSEEEEEECCTTSS
T ss_pred CCeEEecHHHHHHHHhcCCCcCCceeeehhhhhhhcCccCCCCccCHHHHHHh--CCCHHHCCCccCCccceeccchHHh
Confidence 45789999999999545 89999999999999999999999999999 5999999999999999999998 55
Q ss_pred cCCCCCCeEEecCCchhhhhhccccc-CCCcEEEeccchhhhhhcc--c-----cc------cccc---chhH---HHHH
Q psy224 157 LGINKDTPINVALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDE--M-----GA------SMNG---GNCL---ATFV 216 (547)
Q Consensus 157 ~Gl~~g~~V~~g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~--~-----~~------~~~g---g~~~---~~~~ 216 (547)
+| + +||++|++|++|+++|+|+. +|++++|+|||+++.+++. . +. ...+ .+.+ ..++
T Consensus 234 ~G--~-~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 310 (504)
T 2d4w_A 234 VP--G-VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAPAVYALEGSIAVT 310 (504)
T ss_dssp ST--T-CEEEEEEEHHHHHHHHTTCCSTTEEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSCCEEEEEEEESCS
T ss_pred CC--C-CeEEEECCcHHHHHhhCCCCCCCcEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCCceEEEcchhhhH
Confidence 88 6 99999999999999999997 8999999999999876531 1 10 1112 1111 2446
Q ss_pred hHHHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC---ceEEecccCCCCHHHHHHHHH
Q psy224 217 CTLQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQNLGVTKLFVALC 293 (547)
Q Consensus 217 g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~---~~~~gl~~~~~~~~~l~ra~~ 293 (547)
|.+++|+++.+.....++.+++++. ++ ++++|++|+|||.|+|+|+|++ |.|+|++..| +++|++||++
T Consensus 311 G~~~~W~~~~~~~~~~~~~l~~~a~------~~-~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~-~~~~l~rAvl 382 (504)
T 2d4w_A 311 GSLVQWLRDNLGMFEDAPDVEWLAG------KV-QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYV-NRNHIARAAL 382 (504)
T ss_dssp HHHHHHHHHTTCTTTTCSCTHHHHT------TS-SSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHh------hC-CCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCC-CHHHHHHHHH
Confidence 7889999997643222233344432 22 3588999999999999999986 7999999997 9999999999
Q ss_pred HHHHHHHHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 294 EGIINNIHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 294 Egia~~~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
||++|.+|++++. +++ .| +++|+++||+ +||++|+|++||++|+||.++...+..+
T Consensus 383 Egia~~~~~~~~~--l~~~~g~~~~~i~~~GG~-a~s~~~~Qi~Adv~g~pV~~~~~~e~~a 441 (504)
T 2d4w_A 383 EATAFQSREVVDA--MNADSGVDLTELRVDGGM-VANELLMQFQADQLGVDVVRPKVAETTA 441 (504)
T ss_dssp HHHHHHHHHHHHH--HHHHHSCCCCEEEEESGG-GGCHHHHHHHHHHHTSCEEEESCSCHHH
T ss_pred HHHHHHHHHHHHH--HHHhcCCCcceEEEeCCc-ccCHHHHHHHHHHhCCeEEeCCCCcchH
Confidence 9999999999994 654 45 6899999998 9999999999999999999987766444
No 18
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=3.4e-51 Score=434.03 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=255.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH-----------------
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC----------------- 65 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~----------------- 65 (547)
|+|+||||+||||+|++|+|.+|++ ++..+.+++. . +.+|+.||||++||+.+..+
T Consensus 5 m~~~lgIDiGTts~Ka~l~d~~G~i-~~~~~~~~~~-~-----~~~g~~eqdp~~~~~~~~~~i~~~~~~~I~aIgis~~ 77 (482)
T 3h6e_A 5 TGATIVIDLGKTLSKVSLWDLDGRM-LDRQVRPSIP-L-----EIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVGH 77 (482)
T ss_dssp ---CEEEEECSSEEEEEEECTTSCE-EEEEEEECCC-E-----ESSSCEECCHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred hceEEEEEcCCCCeEEEEEECCCcE-EEEEEecCCc-c-----cCCCceeECHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 6799999999999999999999998 9999988864 2 47899999999999976544
Q ss_pred ----------------HhhCCchhhhhhceecc-----------------C-------------------CCcchhhHHH
Q psy224 66 ----------------ILRLPKDHLKQVKHIES-----------------T-------------------NDLSFQDFIV 93 (547)
Q Consensus 66 ----------------i~~~d~r~~~~~~~i~~-----------------~-------------------~~l~~~d~l~ 93 (547)
|.|.|+|+.+.++.+.. . .+++++|||.
T Consensus 78 ~~~~v~~D~G~pl~~ai~w~D~R~~~~~~~l~~~~~~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~l~~~dyl~ 157 (482)
T 3h6e_A 78 GAGIAALTDGRLAFPPLDYEQSIPEAVMADYRSQRDPFARTGSPALPDGLNIGSQLWWLDQLHPDVMANATLLPWAQYWA 157 (482)
T ss_dssp SSCEEEEETTEECSCCBCTTSCCCHHHHHHHHTTCCCHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSCEEEEHHHHHH
T ss_pred cCCEEEECCCCEeccccccCCcccHHHHHHHHhhChHHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcCEEEccHHHHH
Confidence 45778887654443211 0 1578899999
Q ss_pred HHHhCCCCCcccccc-ccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccc---cCCCCCCeEEecC
Q psy224 94 AMLCDLQEPVMSNQN-AASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVAL 169 (547)
Q Consensus 94 ~~LtG~~~~~~d~s~-As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~---~Gl~~g~~V~~g~ 169 (547)
|+||| ++++|+|+ ||+|+|||+++++|+ ++|+.+ +|+ ++||+++++++++|++++++ +||++|+||++|+
T Consensus 158 ~~LTG--~~~td~s~~As~t~l~d~~~~~W~-~ll~~~--gi~-~~LP~v~~~~~~~G~l~~~~A~~~GL~~g~pV~~g~ 231 (482)
T 3h6e_A 158 WFLTG--RAVSEVTSLGCHSDLWDPQDGDFS-PMAKRL--GWA-ARFAPIVRAGDTVGALLPAIAERTGLSPDVQVLAGL 231 (482)
T ss_dssp HHTTS--CCCEEHHHHTTTCSSEETTTTEEC-HHHHHT--TCG-GGBCCEECTTSEEEECCHHHHHHHTCCTTCEEECCE
T ss_pred HHHhC--CeeeecchhhhccCCccCCcCcHH-HHHHHc--CCH-HhCCCCcCCCceeeeeCHHHHHHhCCCCCCEEEEeC
Confidence 99999 99999998 899999999999999 599999 587 89999999999999999987 9999999999999
Q ss_pred Cchhhhhhc---cccc-CCC-cEEEeccchhhhhhcc---c-c-c-----cc----ccchhH---HHHHhHHHHHHHHhC
Q psy224 170 GDLQCSVLA---TLQY-HSD-AIVNISTSAQIAFIDE---M-G-A-----SM----NGGNCL---ATFVCTLQNWFKEFG 227 (547)
Q Consensus 170 ~D~~aa~~g---~g~~-~~~-~~is~GTs~~~~~~~~---~-~-~-----~~----~gg~~~---~~~~g~~~~w~~~~~ 227 (547)
||++|+++| +|+. +|+ +++|+|||.++....+ . . . .. +.++.+ ..++|.+++|+++..
T Consensus 232 ~D~~aa~lG~~g~g~~~~g~~~~~s~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~w~~~~~ 311 (482)
T 3h6e_A 232 HDSNAALLAARGFAEIADNEATVLSTGTWFIAMRLPATPVDTATLPEARDCLVNVDVHGRPVPSARFMGGREIETLIEID 311 (482)
T ss_dssp EHHHHHHHHHTTSTTTTTSSEEEEECSSSEEEEEECSSCCCGGGCCGGGTEEEEECTTSCEEEEEEECHHHHHHHHHCSG
T ss_pred cHHHHHHhhhhccCCcCCCCEEEEECCceeEEEEecCccCCccccchhhceeeccccccccccchhhhhHHHHHHHHHhc
Confidence 999999999 9987 776 6899999987643222 1 0 0 00 011111 135778899997642
Q ss_pred CCCch--hHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC-ceEEecccCCCCHHHHHHHHHHH--HHHHHHH
Q psy224 228 FNVPQ--NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES-ASVTHITIQNLGVTKLFVALCEG--IINNIHD 302 (547)
Q Consensus 228 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~-~~~~gl~~~~~~~~~l~ra~~Eg--ia~~~~~ 302 (547)
....+ .+..+.+. ...+++++|++|+|||.|+|+|+|++ |+|+||+. .|++||++|+ ++|.+|+
T Consensus 312 ~~~~~~~~~~~~~~a------~~~~~g~~Gl~flP~l~Ger~P~~d~rG~~~Gl~~-----~~l~RA~lE~~Gia~~~r~ 380 (482)
T 3h6e_A 312 TRRVDIKPDQPALLA------AVPEVLRHGRMILPTLMRGFGPYPHGRFAWINRPE-----DWFERRAAACLYAALVADT 380 (482)
T ss_dssp GGCTTCGGGHHHHHH------THHHHHHTTCEEESCSSTTCSSCTTCCCEEESCCS-----SHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHH------hccccCCCCeEEecCCCCCCCCCCCCceEEeCCCH-----HHHHHHHHHHHhHHHHHHH
Confidence 11100 11222211 12346789999999999999999985 99999986 6999999995 9999999
Q ss_pred hhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHH-hCCceEEecchhhhhhhh
Q psy224 303 IMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERI-YGLQLIVEQDQAMRDASY 355 (547)
Q Consensus 303 ~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~-l~~~v~~~~~~~~~~a~~ 355 (547)
+++ .+++. ++|+++||+ +||++|+|++||+ +|+||.+++..+..+.++
T Consensus 381 ~l~--~~~~~--~~i~~~GG~-a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGA 429 (482)
T 3h6e_A 381 ALD--LIGST--GRILVEGRF-AEADVFVRALASLRPDCAVYTANAHNDVSFGA 429 (482)
T ss_dssp HHH--HTTCC--SEEEEESGG-GGCHHHHHHHHHHSTTSEEEEESSCCCTTGGG
T ss_pred HHH--HhcCC--CeEEEeCCc-ccCHHHHHHHhhhcCCCeEEEcCCCchHHHHH
Confidence 999 46554 799999998 9999999999999 999999998776555443
No 19
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=100.00 E-value=1.7e-46 Score=401.99 Aligned_cols=321 Identities=15% Similarity=0.203 Sum_probs=239.9
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHH---------------
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC--------------- 65 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~--------------- 65 (547)
|+|+++||||+|||++|++|+|.+|++ ++..+.++....|. ..+.+|+.+||+++||+++..+
T Consensus 1 m~~~~~lgiDiGtts~k~~l~d~~g~~-~~~~~~~~~~~~~~-~~~~~g~~e~d~~~~~~~i~~~~~~~~~~~~~i~~Ig 78 (489)
T 2uyt_A 1 MTFRNCVAVDLGASSGRVMLARYEREC-RSLTLREIHRFNNG-LHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIG 78 (489)
T ss_dssp -CCEEEEEEEECSSEEEEEEEEEEGGG-TEEEEEEEEEEECC-CEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcceEEEEEecCCCceEEEEEecCcc-ceEEEEEEeecCCC-ccccCCeEEECHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 889999999999999999999999987 76665554322111 2246889999999999866544
Q ss_pred ---------------------HhhCCchhhhhhceeccC--------------------------------------CCc
Q psy224 66 ---------------------ILRLPKDHLKQVKHIEST--------------------------------------NDL 86 (547)
Q Consensus 66 ---------------------i~~~d~r~~~~~~~i~~~--------------------------------------~~l 86 (547)
|.|.|.|+.++++.+... .++
T Consensus 79 is~q~~~~v~~D~~G~~l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l 158 (489)
T 2uyt_A 79 IDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHAL 158 (489)
T ss_dssp EEECSSCEEEECTTSCEESCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHCGGGGGGCCEEE
T ss_pred EecCcccEEEECCCCCCccCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcCchHHHHhhhcc
Confidence 467888887665543210 147
Q ss_pred chhhHHHHHHhCCCCCccccccccccccccccCCCccHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCCCCCeEE
Q psy224 87 SFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPIN 166 (547)
Q Consensus 87 ~~~d~l~~~LtG~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V~ 166 (547)
+++|||.|+||| ++++|+|+||+|+|||+++++||+++|+.+ ++++++||+++++++++|+++.. .| +|+||+
T Consensus 159 ~~~dyl~~~LTG--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~--gi~~~~lP~i~~~~~~~G~~~~~-~~--~g~pV~ 231 (489)
T 2uyt_A 159 LMPDYFSYRLTG--KMNWEYTNATTTQLVNINSDDWDESLLAWS--GANKAWFGRPTHPGNVIGHWICP-QG--NEIPVV 231 (489)
T ss_dssp EHHHHHHHHHHS--CCCCBHHHHGGGTCEETTTTEECHHHHHHH--TCCGGGSCCCBCTTCEEEEEECT-TC--CEEEEE
T ss_pred CcHHHHHHHHhC--CccceehhhhhhcccccCcCccCHHHHHHc--CCCHHHCCCccCCCcceeeeecc-cC--CCCcEE
Confidence 899999999999 899999999999999999999999999999 59999999999999999998743 23 789999
Q ss_pred e-cCCchhhhhhccccc-CCCcEEEeccchhhhhhccc---------c-cccc----cchhH-HHHHhHHHHHHHHhCCC
Q psy224 167 V-ALGDLQCSVLATLQY-HSDAIVNISTSAQIAFIDEM---------G-ASMN----GGNCL-ATFVCTLQNWFKEFGFN 229 (547)
Q Consensus 167 ~-g~~D~~aa~~g~g~~-~~~~~is~GTs~~~~~~~~~---------~-~~~~----gg~~~-~~~~g~~~~w~~~~~~~ 229 (547)
+ |+||++|+++|+|+. ++++++|+|||+++.+.++. + ..+. +.+.+ ....| .|+++.++.
T Consensus 232 ~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~W~~~~~~~ 308 (489)
T 2uyt_A 232 AVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMG---LWLLQRVLQ 308 (489)
T ss_dssp CCCCBHHHHHHHHSCCCSTTEEEEEESSSEEEEEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEECT---THHHHHHHH
T ss_pred EECchHHHHHHhcCCCCCCCcEEEEEchHhhcccccCCCccCHHHHhhcceeecCCCCeEEEehhHhH---HHHHHHhhc
Confidence 7 889999999999987 79999999999988654320 1 1111 11100 00012 587775321
Q ss_pred CchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCC--------ceEEec--ccCCCCHHHHHHHHHHHHHHH
Q psy224 230 VPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES--------ASVTHI--TIQNLGVTKLFVALCEGIINN 299 (547)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~--------~~~~gl--~~~~~~~~~l~ra~~Egia~~ 299 (547)
..+.+.++++.+. +..+++++ .+|+| ++.|++++ +.+.|+ +..| +++||+||++||++|.
T Consensus 309 ~~~~~~~~~l~~~----a~~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~-t~~~l~RAvlEgia~~ 378 (489)
T 2uyt_A 309 ERQINDLPALIAA----TQALPACR-FIINP----NDDRFINPDEMCSEIQAACREMAQPIPE-SDAELARCIFDSLALL 378 (489)
T ss_dssp HTTCCCHHHHHHH----HTTSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCC-SHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHH----hccCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHH
Confidence 1111223333221 12345655 45788 34444432 456666 4565 9999999999999999
Q ss_pred HHHhhhhhhhhh-cC--CcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 300 IHDIMNRSVLHR-SG--INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 300 ~~~~~~~~~l~~-~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
+|++++ .+++ .| +++|+++||| +||++|+|++||++|+||.+..
T Consensus 379 ~r~~~~--~l~~~~g~~~~~i~~~GGg-aks~~~~Qi~ADvlg~pV~~~~ 425 (489)
T 2uyt_A 379 YADVLH--ELAQLRGEDFSQLHIVGGG-CQNTLLNQLCADACGIRVIAGP 425 (489)
T ss_dssp HHHHHH--HHHHHHTCCCSEEEEESGG-GGCHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHH--HHHHHhCCCCCEEEEeCCh-hhhHHHHHHHHHHHCCeeecCC
Confidence 999999 4666 44 7899999998 9999999999999999998765
No 20
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-41 Score=314.18 Aligned_cols=192 Identities=56% Similarity=0.972 Sum_probs=182.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++.+.+|++++++|+||+||++||+|||+.|||+|+.|++.|++.+++|++.|++|++||+|+.+.+.+|
T Consensus 24 ~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw 103 (216)
T 3sbc_A 24 QVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAW 103 (216)
T ss_dssp CTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred hcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHH
Confidence 39999999999865677778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+..+......+++||+++|+++++++.||+..++.+.+.|++||||++|+|++..+++.+.+|+++|+|+.|++||.++
T Consensus 104 ~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~ 183 (216)
T 3sbc_A 104 TNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTD 183 (216)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHh
Confidence 99876666666799999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++.+++.+++|..+|
T Consensus 184 ~~~~~~Pa~W~~G~~~i~p~~~~~~~~~~~~~ 215 (216)
T 3sbc_A 184 KNGTVLPCNWTPGAATIKPTVEDSKEYFEAAN 215 (216)
T ss_dssp HHCCBBCTTCCTTSCCBCCSTTTHHHHHHHHC
T ss_pred hcCCCcCCCCCCCCceecCCHHHHHHHHHHcc
Confidence 99999999999999999999999999999887
No 21
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=100.00 E-value=1.6e-38 Score=298.36 Aligned_cols=189 Identities=63% Similarity=1.131 Sum_probs=148.8
Q ss_pred ccCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|+++.+ -++++++++|+||+||++||+|||+.|||+|+.|+..|++++++|++.|++|++||+|+...+.+
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~ 106 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQ 106 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHH
Confidence 49999999995531 13444799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.++........+++||+++|++++++++||+..++.+...|++||||++|+|++.++++...+++++|+|+.|++||.+
T Consensus 107 w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~ 186 (219)
T 3tue_A 107 WTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFV 186 (219)
T ss_dssp HHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhH
Confidence 99876555555589999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred hhcCccccCCccCCCcccccCccchhc-ccc
Q psy224 515 AEHGEVCPAGWKPGSKTMKADPSGSQE-YFK 544 (547)
Q Consensus 515 ~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~ 544 (547)
+++++.||++|++|+++|++.+++.++ ||.
T Consensus 187 ~~~~~~~Pa~W~~G~~~i~p~~~~~~e~y~~ 217 (219)
T 3tue_A 187 EKHGEVCPANWKKGDPGMKPEPNASVEGYFS 217 (219)
T ss_dssp HHC----------------------------
T ss_pred HhcCCCcCCCCCCCCccccCCCccchhhhcc
Confidence 999999999999999999998766544 774
No 22
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=100.00 E-value=2.1e-36 Score=294.45 Aligned_cols=192 Identities=65% Similarity=1.177 Sum_probs=150.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+++++++++++++||++||+|||++|||+|+.+++.|++++++|+++|++|++||.|+.+...+|
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~ 142 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW 142 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHH
Confidence 49999999999874466668999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||+++|.++++++.||+.....+...|++||||++|+|++.+.++.+.+++++++++.|++++...
T Consensus 143 ~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq~~~ 222 (254)
T 3tjj_A 143 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTD 222 (254)
T ss_dssp HTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhcccc
Confidence 99876666555799999999999999999998766666789999999999999999988888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++.+++.++||..+|
T Consensus 223 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 254 (254)
T 3tjj_A 223 KHGEVAPAGWKPGSETIIPDPAGKLKYFDKLN 254 (254)
T ss_dssp HHC-----------------------------
T ss_pred ccCccccCCCCCCCceeccChhHHHHHhhccC
Confidence 99999999999999999999999999999988
No 23
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=100.00 E-value=6.2e-35 Score=282.39 Aligned_cols=191 Identities=66% Similarity=1.194 Sum_probs=174.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++||.|+++..++|
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~ 128 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAW 128 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 49999999999973477668999999999999999997799999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||+++|.++++++.||+..+..|...|++||||++|+|++.+.++.+.+++++++++.|++++...
T Consensus 129 ~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~ 208 (240)
T 3qpm_A 129 IITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTD 208 (240)
T ss_dssp HHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence 99876665555799999999999999999998766666789999999999999999888888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
++++.||++|++|+++|++.+++.++||..|
T Consensus 209 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~ 239 (240)
T 3qpm_A 209 KHGEVCPAGWKPGSDTIIPDPSGKLKYFDKM 239 (240)
T ss_dssp HHSCBBCTTCCTTSCCBCSSTTTTHHHHC--
T ss_pred hcCCccCCCCCCCCceecCCHHHHHHHHhhc
Confidence 9999999999999999999999999999876
No 24
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=272.51 Aligned_cols=192 Identities=65% Similarity=1.177 Sum_probs=170.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++||+||.|+++..++|
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 99 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAW 99 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 48999999999983256557999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.++++++....+++||++.|.++++++.|++.....+...|++||||++|+|++.+.++.+.+++.+++++.|++++...
T Consensus 100 ~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~ 179 (211)
T 2pn8_A 100 INTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTD 179 (211)
T ss_dssp HTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhcc
Confidence 98764432222678999999999999999997544455689999999999999999888777789999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++..++.+++|.++|
T Consensus 180 ~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~ 211 (211)
T 2pn8_A 180 KHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN 211 (211)
T ss_dssp HHCCBBCTTCCTTSCCBCSSTTTHHHHHCC--
T ss_pred cCCcccCCCCCCCCccccCCchhHHHHhhhcC
Confidence 99999999999999999999999999998875
No 25
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=100.00 E-value=3.1e-33 Score=267.31 Aligned_cols=192 Identities=62% Similarity=1.094 Sum_probs=144.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+.+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+.+..++|
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 107 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAW 107 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 48999999999863333347999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+++++.....+++||++.|.++++++.|++.....+...|++||||++|+|++.+.++.+.+++.+++++.|++++..+
T Consensus 108 ~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~ 187 (220)
T 1zye_A 108 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE 187 (220)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhc
Confidence 98775554444789999999999999999998655566689999999999999999888888889999999999999999
Q ss_pred hcCccccCCccCCCcccccCccchhcccccCC
Q psy224 516 EHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
++++.||++|++|+++|++..++.+++|+.++
T Consensus 188 ~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~~ 219 (220)
T 1zye_A 188 AHGEVSPANWTPESPTIKPHPTASREYFEKVN 219 (220)
T ss_dssp C-------------------------------
T ss_pred ccCCccCCCCCCCCceecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998764
No 26
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=100.00 E-value=4.5e-33 Score=261.83 Aligned_cols=191 Identities=64% Similarity=1.150 Sum_probs=173.2
Q ss_pred ccCCCCCCeeecccc-CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~-~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ . +|+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++|++|+.|+.++..+
T Consensus 6 ~~G~~aP~f~l~~-~~~g~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~ 84 (197)
T 1qmv_A 6 RIGKPAPDFKATA-VVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLA 84 (197)
T ss_dssp CTTSBCCCCEEEE-EETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred cCCCCCCCeEeEe-ecCCCccEEEHHHHCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence 3899999999998 5 7755699999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.++++++....+++||++.|.++++++.|++.....+..+|++||||++|+|++.+.+..+.+++++++++.|++++..
T Consensus 85 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l~~~ 164 (197)
T 1qmv_A 85 WINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYT 164 (197)
T ss_dssp HHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCceEEEECCcHHHHHHcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhcchh
Confidence 99887655444478999999999999999999865555568999999999999999988887788999999999999988
Q ss_pred hhcCccccCCccCCCcccccCccchhcccccCC
Q psy224 515 AEHGEVCPAGWKPGSKTMKADPSGSQEYFKTVN 547 (547)
Q Consensus 515 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 547 (547)
.+++++||++|++|+++|++..+..++++.++|
T Consensus 165 ~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~~~ 197 (197)
T 1qmv_A 165 DEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN 197 (197)
T ss_dssp HHHCCBBCTTCCTTSCCBCSSHHHHHHHHHHHC
T ss_pred hccCCccCCCcCcCCccccCCccchhhHhhccC
Confidence 899999999999999999999988888988765
No 27
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=100.00 E-value=1.1e-32 Score=262.06 Aligned_cols=189 Identities=41% Similarity=0.826 Sum_probs=169.9
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++ . +|+++.++++++ +||++||+|||++|||+|+.+++.|++++++|++++++||+||.|+++..
T Consensus 22 ~~G~~aP~f~l~~-~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~ 100 (213)
T 2i81_A 22 YVGKEAPFFKAEA-VFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTH 100 (213)
T ss_dssp CBTSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred cCCCcCCCeEeec-cccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 4899999999999 6 773358999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++++.....+++||++.|.++++++.|++.. ..+...|++||||++|+|++.+.++.+.+++.+++++.|++++
T Consensus 101 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 101 LAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999987655444447899999999999999999985 3344589999999999999999888777789999999999999
Q ss_pred hhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 513 FVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
...++++.||++|++|+++|++..+..++||..+
T Consensus 180 ~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~~~~ 213 (213)
T 2i81_A 180 HHEKYGDVCPANWQKGKVSMKPSEEGVAQYLSTL 213 (213)
T ss_dssp HHHHHCCBCCTTCCTTSCCBCSSTTTHHHHTTC-
T ss_pred hhhhcCCCcCCCCCcCCccccCCchhHHHHhhcC
Confidence 9999999999999999999999998889998753
No 28
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=100.00 E-value=1.2e-32 Score=259.91 Aligned_cols=190 Identities=66% Similarity=1.182 Sum_probs=171.3
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+++|+|++++ . +|+++.+++++++||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+.+.++
T Consensus 7 ~~G~~aP~f~l~~-~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~ 85 (202)
T 1uul_A 7 EDLHPAPDFNETA-LMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL 85 (202)
T ss_dssp CTTSBCCCCEEEE-ECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred cCCCcCCCcEeee-eecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 4899999999998 5 675569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.++++......+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+.+++.+++++.|++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~~ 165 (202)
T 1uul_A 86 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQF 165 (202)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhhh
Confidence 99987654443347899999999999999999986555556899999999999999998888878899999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
..++++.||++|++|+++|++..+..+++|.++
T Consensus 166 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~ 198 (202)
T 1uul_A 166 VEKHGEVCPANWKPGDKTMKPDPEKSKEYFGAV 198 (202)
T ss_dssp HHHHSCBBCTTCCTTSCCBCSSTGGGHHHHCC-
T ss_pred hhhcCCccCCCcCCCCceeccChhhHHHHHhhh
Confidence 999999999999999999999988888888753
No 29
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=100.00 E-value=9.9e-33 Score=263.51 Aligned_cols=189 Identities=41% Similarity=0.803 Sum_probs=146.6
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++ . +|+.+.++++++ +||++||+|||++|||+|+.++|.|++++++|++++++|++||.|+++..
T Consensus 26 ~~G~~aP~F~l~~-~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~ 104 (221)
T 2c0d_A 26 LVTKKAYNFTAQG-LNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSH 104 (221)
T ss_dssp CTTSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEec-cccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 4899999999999 6 773248999999 99999999999999999999999999999999999999999999999889
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++..+....+++||++.|.+.++++.|++. +..|...|++||||++|+|++.+.++.+..++.+++++.|++++
T Consensus 105 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 105 LAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 99998764332222578999999999999999997 44444689999999999999999887766778999999999999
Q ss_pred hhhhcCccccCCccCCCcccccCccchhcccccC
Q psy224 513 FVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKTV 546 (547)
Q Consensus 513 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 546 (547)
...+++.+||.+|++++++|++..+..++||..+
T Consensus 184 ~~~~~~~~cp~~W~~g~~~~~~~~~~~~~~~~~~ 217 (221)
T 2c0d_A 184 HVDTSGEVCPINWKKGQKAFKPTTESLIDYMNNA 217 (221)
T ss_dssp HHHHHCCSCC------------------------
T ss_pred hhhcCCCcCCCCCCCCCccccCCcHHHHHHHHhc
Confidence 9999999999999999999999888888888763
No 30
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=100.00 E-value=5.6e-33 Score=265.03 Aligned_cols=184 Identities=29% Similarity=0.518 Sum_probs=161.8
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++.+ . +| .+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 4 ~iG~~aP~F~l~~-~~~~G---~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~ 79 (220)
T 1xcc_A 4 HLGATFPNFTAKA-SGIDG---DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESH 79 (220)
T ss_dssp CTTCBCCCCEECB-TTCSS---CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCcEeec-ccCCC---cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 3899999999999 7 67 7999999998 88888877999999999999999999999999999999999999888
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccC----CC--cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE----TG--IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~----~g--~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+..+.+....+++||+++|.+.++++.||+.... .+ ...|++||||++|+|++.+.++.+.+++.+++++
T Consensus 80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~ 159 (220)
T 1xcc_A 80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILR 159 (220)
T ss_dssp HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 99988543221123899999999999999999997431 11 3479999999999999999888888889999999
Q ss_pred HHHhhHhhhhcCccccCCccCCCcccccC---ccchhccc
Q psy224 507 LVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYF 543 (547)
Q Consensus 507 ~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~ 543 (547)
.|+++|..+++++.||++|++|+++|++- .++.+.+|
T Consensus 160 ~i~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~ 199 (220)
T 1xcc_A 160 VLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHF 199 (220)
T ss_dssp HHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHC
T ss_pred HHHHHHhhhcCCcccCCCcCcCCceEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999883 57788888
No 31
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=100.00 E-value=1.5e-32 Score=262.85 Aligned_cols=186 Identities=31% Similarity=0.499 Sum_probs=163.6
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
..+|+.+|+|++.+ .+| .+++++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.++
T Consensus 5 l~~G~~aP~F~l~~-~~G---~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~ 80 (224)
T 1prx_A 5 LLLGDVAPNFEANT-TVG---RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL 80 (224)
T ss_dssp CCTTCBCCCCEEEE-TTE---EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred CCCcCCCCCcEEec-CCC---CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 44899999999999 777 7999999997 888888779999999999999999999999999999999999998888
Q ss_pred HHhhccccCCCC---CCcceeeecCCChHHHHHhCCcccCC------CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy224 434 AWCNIPRNKGGL---GDMAIPILSDKSMSIARSYGVLNEET------GIPYRGLFIIDDKQNLRQITINDLPVGRSVDET 504 (547)
Q Consensus 434 ~~~~~~~~~~~~---~~~~fp~l~D~~~~~~~~~~v~~~~~------g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~i 504 (547)
+|.++.+.+... .+++||++.|.+.++++.||+...+. ....|++||||++|+|++.+.++.+.+++.+++
T Consensus 81 ~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~ei 160 (224)
T 1prx_A 81 AWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEI 160 (224)
T ss_dssp HHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHH
T ss_pred HHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 998874333221 38999999999999999999975321 235799999999999999999888888899999
Q ss_pred HHHHHhhHhhhhcCccccCCccCCCcccccC---ccchhcccc
Q psy224 505 LRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 505 l~~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~ 544 (547)
++.|++++..+++++.||++|++|+++|+.- .++++++|+
T Consensus 161 l~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~ 203 (224)
T 1prx_A 161 LRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFP 203 (224)
T ss_dssp HHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCT
T ss_pred HHHHHHHHhhccCCcCCCCCCCCCCceEeCCCCCHHHHHHhhc
Confidence 9999999999999999999999999999873 477888885
No 32
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=100.00 E-value=4.4e-33 Score=267.33 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=163.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| .+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+++
T Consensus 4 ~iG~~aPdF~l~~-~~G---~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~ 79 (233)
T 2v2g_A 4 TLGEVFPNFEADS-TIG---KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKE 79 (233)
T ss_dssp CTTCBCCCCEEEE-TTC---CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcEEec-CCC---CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHH
Confidence 3899999999999 888 7999999997 9999999999999999999999999999999999999999999998899
Q ss_pred HhhccccCCCCC--CcceeeecCCChHHHHHhCCcccC----C--CcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 435 WCNIPRNKGGLG--DMAIPILSDKSMSIARSYGVLNEE----T--GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 435 ~~~~~~~~~~~~--~~~fp~l~D~~~~~~~~~~v~~~~----~--g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
|.+....+. .. +++||+++|.++++++.||+.... . ....|++||||++|+|++.+.++.+.+++++++++
T Consensus 80 ~~~~i~~~~-~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr 158 (233)
T 2v2g_A 80 WSEDVKCLS-GVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILR 158 (233)
T ss_dssp HHHHHHHHH-TCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred HHHHHHHhh-CcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 988543221 12 579999999999999999997431 1 23479999999999999999888888889999999
Q ss_pred HHHhhHhhhhcCccccCCccCCCcccccC---ccchhccccc
Q psy224 507 LVQAFQFVAEHGEVCPAGWKPGSKTMKAD---PSGSQEYFKT 545 (547)
Q Consensus 507 ~l~~l~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~ 545 (547)
.|+++|..+++++.||++|++|+++|+.- .++++++|+.
T Consensus 159 ~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~ 200 (233)
T 2v2g_A 159 VIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKTLFPN 200 (233)
T ss_dssp HHHHHHHHHHSSEEBCTTCCTTSCEEECTTSCHHHHHHHCTT
T ss_pred HHHHHHhhccCCccCCCCcCcCCceEeCCCCCHHHHHHhcCC
Confidence 99999999999999999999999999873 3777887764
No 33
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=99.98 E-value=7.1e-32 Score=252.54 Aligned_cols=187 Identities=43% Similarity=0.859 Sum_probs=153.6
Q ss_pred cCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 357 LEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
+|+++|+|++.+ . +|+++.++++++ +||++||+|||++|||+|+.+++.|++++++|++++++|++||.|+++.++
T Consensus 2 ~G~~aP~f~l~~-~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~ 80 (192)
T 2h01_A 2 FQGQAPSFKAEA-VFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHL 80 (192)
T ss_dssp CSSBCCCCEEEE-ECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCcCCCcEeEe-eecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHH
Confidence 789999999999 6 773348999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+++..+....+++||++.|.+.++++.|++.. ..|...|++||||++|+|++.+.++.+..++.+++++.|++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 159 (192)
T 2h01_A 81 AWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQH 159 (192)
T ss_dssp HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHH
T ss_pred HHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHhh
Confidence 99988755544447899999999999999999985 33445899999999999999998877777789999999999999
Q ss_pred hhhcCccccCCccCCCcccccCccchhccccc
Q psy224 514 VAEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 514 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
..++++.||.+|++++++|++.....++||..
T Consensus 160 ~~~~~~~cp~~w~~~~~~~~~~~~~~~~~~~~ 191 (192)
T 2h01_A 160 HEKYGDVCPANWQKGKESMKPSEEGVAKYLSN 191 (192)
T ss_dssp HHHHCCCCCSSCCCC-----------------
T ss_pred hhhcCCCccCCCCCCCccccCCchhhhhHhhc
Confidence 99999999999999999999998888888764
No 34
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=99.97 E-value=1.6e-31 Score=255.85 Aligned_cols=181 Identities=65% Similarity=1.144 Sum_probs=163.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|+++++.+|+++++++++++||++||+||+++||++|+.++|.|++++++|+++|++||+||.|++++.++|
T Consensus 41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~ 120 (222)
T 3ztl_A 41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW 120 (222)
T ss_dssp CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 49999999999972267668999999999999999995599999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+.++++....+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+..+.++++++.|++++...
T Consensus 121 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l~~~~ 200 (222)
T 3ztl_A 121 DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVE 200 (222)
T ss_dssp HHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhccc
Confidence 99876665555899999999999999999998666566789999999999999999888887778999999999999999
Q ss_pred hcCccccCCccCCCcccccCc
Q psy224 516 EHGEVCPAGWKPGSKTMKADP 536 (547)
Q Consensus 516 ~~~~~~~~~w~~~~~~~~~~~ 536 (547)
++++.||++|+++++++.+.+
T Consensus 201 ~~~~~c~~~w~~~~~~~~~~~ 221 (222)
T 3ztl_A 201 KHGEVCPVNWKRGQHGIKVNQ 221 (222)
T ss_dssp HHSCBBCTTCCTTSCCBCC--
T ss_pred ccCccCCcCcCCCCccccCCC
Confidence 999999999999999988754
No 35
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=99.97 E-value=2.2e-31 Score=247.84 Aligned_cols=177 Identities=34% Similarity=0.681 Sum_probs=156.5
Q ss_pred cCCCCCCeeecccc-CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 357 LEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~-~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
+|+++|+|++++ . +|+++.+++++++||++||+||+++|||+|+.++|.|++++++|+++|++|++||.|+++.+++|
T Consensus 3 ~G~~aP~f~l~~-~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 81 (186)
T 1n8j_A 3 INTKIKPFKNQA-FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 81 (186)
T ss_dssp TTCBCCCCEEEE-EETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred CCCcCCCcEeec-ccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 799999999999 6 57334899999999999999997799999999999999999999999999999999999888899
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~ 515 (547)
.+++. ...+++||+++|.+.++++.||+.....+...|++||||++|+|++.+.++.+..++.+++++.|++++...
T Consensus 82 ~~~~~---~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 158 (186)
T 1n8j_A 82 HSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVA 158 (186)
T ss_dssp HHHCT---TGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---cccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 88641 111689999999999999999998544444579999999999999999887766778999999999999888
Q ss_pred hc-CccccCCccCCCcccccCcc
Q psy224 516 EH-GEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 516 ~~-~~~~~~~w~~~~~~~~~~~~ 537 (547)
.+ ++.||++|++|+++|+...+
T Consensus 159 ~~p~~~~p~~w~~~~~~~~~~~~ 181 (186)
T 1n8j_A 159 AHPGEVCPAKWKEGEATLAPSLD 181 (186)
T ss_dssp HSTTCBBCTTCCTTSCCBCCSST
T ss_pred hcCCCccCCCCCCCCccccCChH
Confidence 88 99999999999999988654
No 36
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=99.97 E-value=2.1e-31 Score=257.20 Aligned_cols=183 Identities=33% Similarity=0.628 Sum_probs=163.2
Q ss_pred ccCCCCCCeeeccccCCceeeEec-cCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKL-SQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l-~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+|+++|+|++.+ .+| .+++ +++ +||++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 6 ~iG~~aPdF~l~~-~~G---~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~ 81 (249)
T 3a2v_A 6 LIGERFPEMEVTT-DHG---VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH 81 (249)
T ss_dssp CTTSBCCCEEEEE-TTE---EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEc-CCC---CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHH
Confidence 4899999999999 778 6999 999 99998888777999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCc-ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~-~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+|.+..+.+... +++||+++|.++++++.||+..+..+. ..|++||||++|+|++.++++.+.+++.+++++.|+++
T Consensus 82 ~~w~~~~~~~~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 82 IKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp HHHHHHHHHHTCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 8998865443322 899999999999999999998654443 68999999999999999998888889999999999999
Q ss_pred HhhhhcCccccCCccC-----CCcccccC---ccchhcccc
Q psy224 512 QFVAEHGEVCPAGWKP-----GSKTMKAD---PSGSQEYFK 544 (547)
Q Consensus 512 ~~~~~~~~~~~~~w~~-----~~~~~~~~---~~~~~~~~~ 544 (547)
|..+++++.||++| + |+++|++. .++.+..|+
T Consensus 161 q~~~~~~~~~Pa~W-~~~~~~g~~~~~~~~~~~~~~~~~~~ 200 (249)
T 3a2v_A 161 KLGDSLKRAVPADW-PNNEIIGEGLIVPPPTTEDQARARME 200 (249)
T ss_dssp HHHHHHTCBBCTTT-TSBTTTBTCEEECCCCSHHHHHHHHH
T ss_pred HhccccCccCCCCC-CCCCCCCCCeecCCCCCHHHHHHhcc
Confidence 99999999999999 9 99999995 366666665
No 37
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=99.97 E-value=6e-30 Score=240.61 Aligned_cols=185 Identities=50% Similarity=0.886 Sum_probs=146.1
Q ss_pred cCCCCCCeeecccc--CCcee---eEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChh
Q psy224 357 LEKPAPEFEGQAVV--NGQFK---NIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~---~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
+|+++|+|++.+ . +| + .++++++ +||++||+|||++|||+|+.++|.|++++++|++++++|++|+.|+++
T Consensus 3 ~G~~~P~f~l~~-~~~~G--~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~ 79 (198)
T 1zof_A 3 VTKLAPDFKAPA-VLGNN--EVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQ 79 (198)
T ss_dssp TTSBCCCCEEEE-ECTTS--CEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CCCcCCceEeec-ccCCC--cccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 799999999999 6 78 6 8999999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
..++|.++.+.+...++++||++.|.+.++++.|++..+. |...|++||||++|+|++.+.+..+..++.+++++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~-g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~ 158 (198)
T 1zof_A 80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158 (198)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccC-CcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999998855444334899999999999999999997432 335899999999999999998877767788999999999
Q ss_pred hHhhhhcCccccCCccCCCcccccCccchhccccc
Q psy224 511 FQFVAEHGEVCPAGWKPGSKTMKADPSGSQEYFKT 545 (547)
Q Consensus 511 l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 545 (547)
++...+++..||.+|..++++|+++.+..+.++..
T Consensus 159 l~~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~ 193 (198)
T 1zof_A 159 LLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKE 193 (198)
T ss_dssp HHHHHSSCCCCC-----------------------
T ss_pred HHHhhccCCccCCcCcCCCccccCCcccccceecc
Confidence 99999999999999999999999987666666654
No 38
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=99.96 E-value=1.2e-29 Score=236.22 Aligned_cols=175 Identities=38% Similarity=0.690 Sum_probs=142.2
Q ss_pred cCCCCCCeeeccccCCcee----eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKPAPEFEGQAVVNGQFK----NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~----~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
+|+++|+|++.+ .+| + .+++++++||++||+|||++|||+|+.+++.|++++++|+++++++++|+.|+++..
T Consensus 3 ~G~~~P~f~l~~-~~g--~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~ 79 (187)
T 1we0_A 3 IGTEVQPFRAQA-FQS--GKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_dssp TTCBCCCCEEEE-ECS--SSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCcCCCeEEec-cCC--CccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 799999999999 777 6 899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++... .+++||++.|.+.++++.|++.....+...|++||||++|+|++.+.+..+..++.+++++.|++++
T Consensus 80 ~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 156 (187)
T 1we0_A 80 KAWHENSPAV---GSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ 156 (187)
T ss_dssp HHHHHSCHHH---HTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred HHHHHHhccc---cCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 8888764110 1588999999999999999998655455689999999999999999887766678899999999999
Q ss_pred hhhhc-CccccCCccCCCcccccCcc
Q psy224 513 FVAEH-GEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 513 ~~~~~-~~~~~~~w~~~~~~~~~~~~ 537 (547)
....+ +..||.+|++++++|+..++
T Consensus 157 ~~~~~~~~~~p~~w~~~~~~~~~~~~ 182 (187)
T 1we0_A 157 YVRENPGEVCPAKWEEGGETLKPSLD 182 (187)
T ss_dssp HHHTSTTCCC----------------
T ss_pred hhhhCCCcccccccccCCceeecCHH
Confidence 88888 99999999999999997654
No 39
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.96 E-value=4.3e-29 Score=225.73 Aligned_cols=146 Identities=33% Similarity=0.529 Sum_probs=126.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +++++++++||++||+|||++|||+|+.++|.|++++++|+++++++++||.|+++.+++|
T Consensus 5 ~vG~~aPdF~l~~-~~G--~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~ 81 (157)
T 4g2e_A 5 EIGELAPDFELPD-TEL--KKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAF 81 (157)
T ss_dssp CTTSBCCCCEEEB-TTS--CEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHH
T ss_pred CCCCCCcCeEeEC-CCC--CEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHH
Confidence 4899999999999 899 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC-----cceeEEEEEcCCCcEEEEEecCCCCC-CCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-----IPYRGLFIIDDKQNLRQITINDLPVG-RSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g-----~~~p~~~lid~~G~v~~~~~~~~~~~-~~~~~il~~l~ 509 (547)
.+++ +++||+++|++++++++||+.....+ ...|++||||++|+|++.++++...+ .+++++++.|+
T Consensus 82 ~~~~-------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 82 KEHN-------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp HHHT-------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred HHHc-------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 9886 89999999999999999998754322 34699999999999999998775443 47899999998
Q ss_pred hh
Q psy224 510 AF 511 (547)
Q Consensus 510 ~l 511 (547)
+|
T Consensus 155 ~L 156 (157)
T 4g2e_A 155 SL 156 (157)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 40
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.96 E-value=4.7e-28 Score=227.11 Aligned_cols=173 Identities=35% Similarity=0.674 Sum_probs=134.5
Q ss_pred ccCCCCCCeeeccccC-------------CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEE
Q psy224 356 ALEKPAPEFEGQAVVN-------------GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVI 422 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~-------------G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi 422 (547)
.+|+++|+|++++ .+ |+++.+++++++||++||+|||++|||+|+.+++.|.+++++|++++++|+
T Consensus 5 ~~G~~~P~f~l~~-~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv 83 (195)
T 2bmx_A 5 TIGDQFPAYQLTA-LIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL 83 (195)
T ss_dssp CTTCBCCCCEEEE-ECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred CCCCcCCCcCccc-ccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999 66 423699999999999999999999999999999999999999998899999
Q ss_pred EEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 423 ACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 423 ~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
+|+.|+++..++|.+++.. ..+++||++.|.+.++++.|++... .+...|++||||++|+|++.+.+..+..++.+
T Consensus 84 ~Vs~d~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 159 (195)
T 2bmx_A 84 GVSIDSEFAHFQWRAQHND---LKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVD 159 (195)
T ss_dssp EEESSCHHHHHHHHHHCTT---GGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred EEECCCHHHHHHHHHHhcc---ccCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCCCHH
Confidence 9999998888899886521 1268899999999999999999844 34458999999999999999988876667899
Q ss_pred HHHHHHHhhHhhhhcCccccCCccCCCcccccCcc
Q psy224 503 ETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537 (547)
Q Consensus 503 ~il~~l~~l~~~~~~~~~~~~~w~~~~~~~~~~~~ 537 (547)
++++.|+++.. +..||.+|++++++|.+.+|
T Consensus 160 ~l~~~l~~l~~----~~~~p~~w~~~~~~~~~~~~ 190 (195)
T 2bmx_A 160 EVLRVLDALQS----DELCASNWRKGDPTLDAGEL 190 (195)
T ss_dssp HHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHhh----CCCcCcccccCCcccCCChH
Confidence 99999999885 67999999999999988765
No 41
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=99.95 E-value=2.2e-29 Score=229.28 Aligned_cols=149 Identities=26% Similarity=0.440 Sum_probs=133.7
Q ss_pred hhccCCCCCCeeeccccCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh
Q psy224 354 SYALEKPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS 431 (547)
Q Consensus 354 ~~~~g~~~p~~~l~~~~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~ 431 (547)
+..+|+++|+|++++ .+| ++++|+++ +||++||+|||++|||+|+.+++.|++++++|+++|+++++||.|+++.
T Consensus 4 ml~vG~~aPdF~l~~-~~G--~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~ 80 (164)
T 4gqc_A 4 LVELGEKAPDFTLPN-QDF--EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWC 80 (164)
T ss_dssp CCCTTSBCCCCEEEB-TTS--CEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHH
T ss_pred cccCCCCCcCcEeEC-CCC--CEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHH
Confidence 334999999999999 889 69999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC----CcceeEEEEEcCCCcEEEEEecCCCCCC-CHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET----GIPYRGLFIIDDKQNLRQITINDLPVGR-SVDETLR 506 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~----g~~~p~~~lid~~G~v~~~~~~~~~~~~-~~~~il~ 506 (547)
+++|.+++ +++||+++|++++++++||+..+.. +...|++||||++|+|++.++++.+..+ +++++|+
T Consensus 81 ~~~~~~~~-------~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~ 153 (164)
T 4gqc_A 81 LKKFKDEN-------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVR 153 (164)
T ss_dssp HHHHHHHT-------TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHH
T ss_pred HHHHHHhc-------CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence 99999886 9999999999999999999975331 2346899999999999999987765444 7999999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|+++.
T Consensus 154 ~l~~l~ 159 (164)
T 4gqc_A 154 EANKIA 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 42
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=99.94 E-value=1.6e-26 Score=211.71 Aligned_cols=146 Identities=21% Similarity=0.345 Sum_probs=130.6
Q ss_pred hccCCCCCCeeec-cccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCcEEEE-EeCCChh
Q psy224 355 YALEKPAPEFEGQ-AVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINTQVIA-CSTDSHF 430 (547)
Q Consensus 355 ~~~g~~~p~~~l~-~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~~vi~-is~d~~~ 430 (547)
..+|+++|+|+++ + .+| +.+++++ ++||++||+|||++|||+|+ .|+|.|++++++|+++|+++|+ ||.|+++
T Consensus 15 ~~vG~~aPdf~l~~~-~~g--~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~ 91 (173)
T 3mng_A 15 IKVGDAIPAVEVFEG-EPG--NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF 91 (173)
T ss_dssp CCTTCBCCCCEEECS-STT--CEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCCCCCCCeEeeeC-CCC--CEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 3499999999999 8 788 6999999 59999999999999999999 5999999999999999999997 9999999
Q ss_pred hHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccCC-----C--cceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 431 SHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEET-----G--IPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~~-----g--~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
..++|.+++ +++ ||+++|++++++++||+..++. | ...|++|||| +|+|++.++++.+.++++
T Consensus 92 ~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~ 163 (173)
T 3mng_A 92 VTGEWGRAH-------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTC 163 (173)
T ss_dssp HHHHHHHHT-------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSST
T ss_pred HHHHHHHHh-------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcch
Confidence 999999987 777 9999999999999999986532 1 3579999999 999999999998888888
Q ss_pred HHHHHHHHhh
Q psy224 502 DETLRLVQAF 511 (547)
Q Consensus 502 ~~il~~l~~l 511 (547)
.++.+.|+.|
T Consensus 164 ~~~~~vl~~l 173 (173)
T 3mng_A 164 SLAPNIISQL 173 (173)
T ss_dssp TSHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8888887754
No 43
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.94 E-value=3.6e-26 Score=207.36 Aligned_cols=149 Identities=32% Similarity=0.419 Sum_probs=135.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCe-EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~-~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||+ +||+|||++|||+|+.+++.|++++++|+++|++|++|+.|+++..++
T Consensus 3 ~~G~~~P~f~l~~-~~G--~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~ 79 (161)
T 3drn_A 3 KVGDKAPLFEGIA-DNG--EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKR 79 (161)
T ss_dssp CTTSBCCCCEEEE-TTS--CEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHH
T ss_pred CCCCcCCCeEeec-CCC--CEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence 3899999999999 889 699999999997 999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 514 (547)
|.+++ +++||++.|.+.++++.|++... ....|++||||++|+|++.+.+.......++++++.|++++..
T Consensus 80 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 80 FKEKY-------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp HHHHT-------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhh
Confidence 99887 89999999999999999999721 2237999999999999999988666677899999999999865
Q ss_pred hh
Q psy224 515 AE 516 (547)
Q Consensus 515 ~~ 516 (547)
.+
T Consensus 151 ~~ 152 (161)
T 3drn_A 151 EI 152 (161)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 44
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=99.93 E-value=1.1e-25 Score=207.89 Aligned_cols=145 Identities=26% Similarity=0.399 Sum_probs=129.6
Q ss_pred cCCC----CCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKP----APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~----~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
+|+. +|+|++++ .+| +++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++|+.|+++..
T Consensus 23 ~Gd~ig~~aP~f~l~~-~~G--~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~ 99 (179)
T 3ixr_A 23 IGDTLNHSLLNHPLML-SGS--TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSH 99 (179)
T ss_dssp TTCBCCHHHHHCCEEE-GGG--EEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHH
T ss_pred cCcccCCcCCCeeEEC-CCC--CEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 6666 99999999 889 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--C----cceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--G----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g----~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+++ +++||++.|++.++++.|++..... + ...|++||||++|+|++.+ .+.....+++++++
T Consensus 100 ~~~~~~~-------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~il~ 171 (179)
T 3ixr_A 100 DSFCAKQ-------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGHAEEVLN 171 (179)
T ss_dssp HHHHHHH-------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTHHHHHHH
T ss_pred HHHHHHc-------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCCHHHHHH
Confidence 9999987 8999999999999999999975321 1 1259999999999999999 45556668899999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|++++
T Consensus 172 ~l~~l~ 177 (179)
T 3ixr_A 172 KLKAHA 177 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
No 45
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=99.92 E-value=1.8e-25 Score=203.02 Aligned_cols=147 Identities=28% Similarity=0.453 Sum_probs=130.8
Q ss_pred hccCCCCCCee--eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 355 YALEKPAPEFE--GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~--l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
..+|+++|+|+ +.+ .+| +++++++++||++||+||+++|||+|+.+++.|++++++|+++|++|++|+.|+++..
T Consensus 7 l~~G~~~P~f~~~l~~-~~G--~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~ 83 (163)
T 3gkn_A 7 AVLELPAATFDLPLSL-SGG--TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSH 83 (163)
T ss_dssp CCCCCCGGGGGCCEEC-STT--CEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred cccCCcCCCccccccC-CCC--CEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 34899999999 999 899 6999999999999999995599999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCC--Cc----ceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--GI----PYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~--g~----~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++|.+++ +++||++.|.+.++++.|++..... +. ..|++||||++|+|++.+ .......+++++++
T Consensus 84 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~il~ 155 (163)
T 3gkn_A 84 DNFCAKQ-------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADAVLA 155 (163)
T ss_dssp HHHHHHH-------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHHHHH
T ss_pred HHHHHHh-------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHHHHH
Confidence 9999987 8999999999999999999975321 10 179999999999999999 55555667899999
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|++++
T Consensus 156 ~l~~l~ 161 (163)
T 3gkn_A 156 ALKAHA 161 (163)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998875
No 46
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=99.92 E-value=4.2e-25 Score=200.79 Aligned_cols=144 Identities=23% Similarity=0.359 Sum_probs=127.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| ++++|++||.|+++..++|
T Consensus 17 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~ 91 (163)
T 1psq_A 17 QVGDKALDFSLTT-TDL--SKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCEEEEc-CCC--cEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHH
Confidence 3899999999999 888 6999999999999999997799999999999999999999 6999999999999999999
Q ss_pred hhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~~l 511 (547)
.+++ ++ +||++.| .+.++++.|++.....+...|++||||++|+|++.+.+.. ....+.+++++.|+++
T Consensus 92 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~l 163 (163)
T 1psq_A 92 CGAE-------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163 (163)
T ss_dssp HHHH-------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred HHhc-------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence 9886 88 9999999 8899999999985433444699999999999999998753 3445689999998864
No 47
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=99.92 E-value=3.4e-25 Score=202.00 Aligned_cols=143 Identities=23% Similarity=0.337 Sum_probs=128.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++ ++++|++||.|+++..++|
T Consensus 21 ~~G~~aP~f~l~~-~~G--~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~~~~~ 94 (166)
T 3p7x_A 21 NEGDFAPDFTVLD-NDL--NQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFAQKRW 94 (166)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCeEEEc-CCC--CEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHHHHHH
Confidence 3899999999999 889 699999999999999999999999999999999999887 6999999999999999999
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~~l 511 (547)
.+++ ++ +||+++|. +.++++.||+.....+...|++||||++|+|++.+++. .....+.+++++.|+++
T Consensus 95 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~l 166 (166)
T 3p7x_A 95 CASA-------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI 166 (166)
T ss_dssp HHHH-------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred HHHc-------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence 9987 88 89999999 89999999998655555589999999999999998655 44455789999998764
No 48
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=99.92 E-value=6e-25 Score=200.17 Aligned_cols=141 Identities=18% Similarity=0.323 Sum_probs=123.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+||+++|||+|+.++|.|++++++| ++++|++||.|+++.+++|
T Consensus 18 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~ 92 (165)
T 1q98_A 18 QVGEIVENFILVG-NDL--ADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQARF 92 (165)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHTTC
T ss_pred CCCCCCCCeEEEC-CCC--CEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHHHH
Confidence 3899999999999 888 6999999999999999999999999999999999999999 6999999999998888888
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEec-CCCCCCCHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIN-DLPVGRSVDETLRLV 508 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~-~~~~~~~~~~il~~l 508 (547)
.+++ ++ +||+++|. +.++++.|++.... .|...|++||||++|+|++.+.+ ......+++++++.|
T Consensus 93 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l 164 (165)
T 1q98_A 93 CGAE-------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 164 (165)
T ss_dssp TTTT-------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred HHHc-------CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhh
Confidence 8765 88 79999998 79999999997532 23346999999999999999985 344556788888765
No 49
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=99.92 E-value=1.2e-24 Score=204.38 Aligned_cols=142 Identities=24% Similarity=0.388 Sum_probs=126.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++++ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| +|++|++||.|+++..++|
T Consensus 53 ~~G~~aPdf~l~d-~~G--~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~~~ 127 (200)
T 3zrd_A 53 QIGDKAKDFTLVA-KDL--SDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQSRF 127 (200)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTC
T ss_pred CCCCCCCCeEEEC-CCC--CEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHHHH
Confidence 3899999999999 889 6999999999999999999999999999999999999999 6999999999998888888
Q ss_pred hhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecC-CCCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIND-LPVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~-~~~~~~~~~il~~l~ 509 (547)
.+++ ++ +||+++|. +.+++++||+.... .+...|++||||++|+|++.+++. .....+++++++.|+
T Consensus 128 ~~~~-------~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~Lk 200 (200)
T 3zrd_A 128 CGAE-------GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK 200 (200)
T ss_dssp TTTT-------TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred HHHc-------CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhhC
Confidence 8765 89 99999999 89999999998543 244579999999999999999755 555668888888763
No 50
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=99.91 E-value=9.2e-25 Score=198.34 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=122.1
Q ss_pred ccCCCCCCeeec--cccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCcE-EEEEeCCChh
Q psy224 356 ALEKPAPEFEGQ--AVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINTQ-VIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~--~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~~-vi~is~d~~~ 430 (547)
.+|+++|+|+++ + .+|..+.+++++ ++||++||+|||++|||+|+ .++|.|++++++|+++|++ |++||.|+++
T Consensus 5 ~~G~~aP~f~l~~~~-~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~ 83 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFD-EQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPF 83 (162)
T ss_dssp CTTCBCCCCEEEEEC-TTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHH
T ss_pred CCCCCCCCeEEEeec-CCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Confidence 389999999986 5 666224899999 89999999999999999999 9999999999999999999 9999999999
Q ss_pred hHHHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccC--CC---cceeEEEEEcCCCcEEEEEecCCCCCC---C
Q psy224 431 SHLAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEE--TG---IPYRGLFIIDDKQNLRQITINDLPVGR---S 500 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~--~g---~~~p~~~lid~~G~v~~~~~~~~~~~~---~ 500 (547)
.+++|.+++ ++ +||+++|++.+++++||+.... .| ...|++|||| +|+|++.++++ +..+ +
T Consensus 84 ~~~~~~~~~-------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~ 154 (162)
T 1tp9_A 84 VMKAWAKSY-------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSS 154 (162)
T ss_dssp HHHHHHHTC-------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCS
T ss_pred HHHHHHHhc-------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCC
Confidence 999999876 77 8999999999999999997432 12 1379999999 99999999887 4433 5
Q ss_pred HHHHHHH
Q psy224 501 VDETLRL 507 (547)
Q Consensus 501 ~~~il~~ 507 (547)
.+++|+.
T Consensus 155 ~~~vl~~ 161 (162)
T 1tp9_A 155 AEDILKD 161 (162)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777654
No 51
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=99.91 E-value=1.7e-24 Score=195.89 Aligned_cols=147 Identities=28% Similarity=0.492 Sum_probs=131.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++|| ++||+||+++|||+|+.+++.|++++++|+++++++++|+.|+++..++
T Consensus 10 ~~G~~~p~f~l~~-~~G--~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~ 86 (160)
T 1xvw_A 10 NVGATAPDFTLRD-QNQ--QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKI 86 (160)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHH
T ss_pred CCCCCCCCeEeEc-CCC--CEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHH
Confidence 4899999999999 888 69999999998 9999998899999999999999999999998899999999999999999
Q ss_pred HhhccccCCCCCCcceeeecCC--ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~--~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++||++.|. +.++++.|++.....+.+.|++||||++|+|++.+.+..+...+++++++.|++++
T Consensus 87 ~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 159 (160)
T 1xvw_A 87 WATQS-------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159 (160)
T ss_dssp HHHHH-------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred HHHhc-------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 99887 8999999995 89999999997543333233999999999999999888766678999999999876
No 52
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=99.91 E-value=4.5e-24 Score=201.44 Aligned_cols=142 Identities=16% Similarity=0.085 Sum_probs=126.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcH-----HHHHHHHHHHHHHhhCCcEEEEEeCCChh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP-----TEIIAFSDRAEEFKKINTQVIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~-----~~~~~l~~~~~~~~~~~~~vi~is~d~~~ 430 (547)
.+|+++|+|+|++ .+| +.+++++++||++||+|||+.|||+|+ .+++.|+++ | +|++|++||.|+++
T Consensus 23 ~vG~~APdFtL~d-~~G--~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~Ds~~ 94 (224)
T 3keb_A 23 RKGDYLPSFMLVD-DQK--HDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVDSPS 94 (224)
T ss_dssp CTTCBCCCCEEEE-TTS--CEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESSCHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECCCHH
Confidence 4999999999999 888 699999999999999999888899999 999999887 4 69999999999999
Q ss_pred hHHHHhhccccCCCCCCc-ceeeecCC-ChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCCC-CCCCHHHH
Q psy224 431 SHLAWCNIPRNKGGLGDM-AIPILSDK-SMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDLP-VGRSVDET 504 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~fp~l~D~-~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~~-~~~~~~~i 504 (547)
.+++|.+++ ++ +||+++|. +.++++.||+..++ .|...|++||||++|+|++.++.+.. ...+++++
T Consensus 95 ~~~~f~~~~-------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~ev 167 (224)
T 3keb_A 95 SLARARHEH-------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAI 167 (224)
T ss_dssp HHHHHHHHH-------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHH
T ss_pred HHHHHHHHc-------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHH
Confidence 999999987 88 79999998 69999999998654 35568999999999999999976543 34579999
Q ss_pred HHHHHhhH
Q psy224 505 LRLVQAFQ 512 (547)
Q Consensus 505 l~~l~~l~ 512 (547)
++.|+.++
T Consensus 168 l~~L~~l~ 175 (224)
T 3keb_A 168 EKLLQEGE 175 (224)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999887
No 53
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=99.91 E-value=2.3e-24 Score=196.46 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=121.7
Q ss_pred ccCCCCCCeeec-cccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEEeCCChhh
Q psy224 356 ALEKPAPEFEGQ-AVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIACSTDSHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~-~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~is~d~~~~ 431 (547)
.+|+++|+|+++ + .+| +.++++++ +||++||+|||++|||+|+. ++|.|++++++|+++|+ +|++||.|+++.
T Consensus 4 ~~G~~aP~f~l~~~-~~G--~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~ 80 (167)
T 2wfc_A 4 KEGDKLPAVTVFGA-TPN--DKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFV 80 (167)
T ss_dssp CTTCBCCCCEEESS-STT--CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHH
T ss_pred CCCCcCCCcEeecC-CCC--cEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHH
Confidence 389999999999 8 888 69999999 99999999999999999999 99999999999999999 999999999999
Q ss_pred HHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC-----CCcceeEEEEEcCCCcEEEEEecCCCCCCC---H
Q psy224 432 HLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE-----TGIPYRGLFIIDDKQNLRQITINDLPVGRS---V 501 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~-----~g~~~p~~~lid~~G~v~~~~~~~~~~~~~---~ 501 (547)
.++|.++. +++ ||+++|++++++++||+.... .....|++||| ++|+|++.++++...... .
T Consensus 81 ~~~~~~~~-------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~~~ 152 (167)
T 2wfc_A 81 MDAWGKAH-------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCSLA 152 (167)
T ss_dssp HHHHHHHT-------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTTSH
T ss_pred HHHHHHhc-------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcceeccH
Confidence 99999986 777 999999999999999987531 01135999999 999999999887654443 4
Q ss_pred HHHHHH
Q psy224 502 DETLRL 507 (547)
Q Consensus 502 ~~il~~ 507 (547)
+.+++.
T Consensus 153 ~~~~~~ 158 (167)
T 2wfc_A 153 PNILSQ 158 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 54
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=99.91 E-value=2.4e-24 Score=197.38 Aligned_cols=143 Identities=24% Similarity=0.307 Sum_probs=126.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 435 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+||+++|||+|+.+++.|++++++| ++++|++||.|+++..++|
T Consensus 22 ~~g~~~P~f~l~~-~~G--~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~ 96 (171)
T 2yzh_A 22 KVGDRAPEAVVVT-KDL--QEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRF 96 (171)
T ss_dssp CTTSBCCCEEEEE-TTS--CEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred CCCCcCCceEEEC-CCC--CEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHH
Confidence 3899999999999 888 6999999999999999999999999999999999999999 6999999999999889999
Q ss_pred hhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHH
Q psy224 436 CNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQ 509 (547)
Q Consensus 436 ~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~ 509 (547)
.+++ ++ +||++.| ++.++ +.|++.... .+...|++||||++|+|++.+.++. ....+.+++++.|+
T Consensus 97 ~~~~-------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~ 168 (171)
T 2yzh_A 97 CESF-------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVK 168 (171)
T ss_dssp HHHT-------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHH
T ss_pred HHHc-------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHH
Confidence 9876 88 8999999 78889 999997543 2345799999999999999997643 34557899999988
Q ss_pred hh
Q psy224 510 AF 511 (547)
Q Consensus 510 ~l 511 (547)
++
T Consensus 169 ~l 170 (171)
T 2yzh_A 169 EL 170 (171)
T ss_dssp HC
T ss_pred hh
Confidence 65
No 55
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=99.91 E-value=1.8e-24 Score=199.99 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=122.2
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccC-CCCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCcE-EEEEeCCChh
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINTQ-VIACSTDSHF 430 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~-vi~is~d~~~ 430 (547)
.+|+++|+|++++ . +| .+++++++ ++||++||+|||++|||+|+. |+|.|++++++|+++|++ |++||.|+++
T Consensus 27 ~vG~~aPdf~l~~-~~~~G-~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~ 104 (184)
T 3uma_A 27 AVGDKLPNATFKE-KTADG-PVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLH 104 (184)
T ss_dssp CTTCBCCCCEEEE-EETTE-EEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCCCCCCcEeec-ccCCC-ceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 4999999999998 6 55 15899999 799988899888999999999 899999999999999999 9999999999
Q ss_pred hHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC--CC---cceeEEEEEcCCCcEEEEEecCCCCC---CC
Q psy224 431 SHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE--TG---IPYRGLFIIDDKQNLRQITINDLPVG---RS 500 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~--~g---~~~p~~~lid~~G~v~~~~~~~~~~~---~~ 500 (547)
..++|.+++ +++ ||+++|++++++++||+..+. .| ...|++|||| +|+|++.++++.+.. .+
T Consensus 105 ~~~~f~~~~-------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~ 176 (184)
T 3uma_A 105 VMGAWATHS-------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASG 176 (184)
T ss_dssp HHHHHHHHH-------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTS
T ss_pred HHHHHHHHh-------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCC
Confidence 999999987 788 999999999999999998542 12 2468899997 999999998875432 35
Q ss_pred HHHHHHH
Q psy224 501 VDETLRL 507 (547)
Q Consensus 501 ~~~il~~ 507 (547)
++++|+.
T Consensus 177 ~~~vL~~ 183 (184)
T 3uma_A 177 AAAMLEL 183 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666654
No 56
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=99.91 E-value=3e-24 Score=194.93 Aligned_cols=146 Identities=16% Similarity=0.290 Sum_probs=124.1
Q ss_pred hccCCCCCCeeeccccC-------CceeeEeccCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHhhCCc-EEEEE
Q psy224 355 YALEKPAPEFEGQAVVN-------GQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEFKKINT-QVIAC 424 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~-------G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~-~vi~i 424 (547)
..+|+++|++++..+.. |+.++++++++ +||++||+|||++|||+|+. |++.|++.+++|+++|+ +|++|
T Consensus 10 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigI 89 (176)
T 4f82_A 10 IQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCV 89 (176)
T ss_dssp CCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34999999999887445 56688999998 99999999999999999999 99999999999999999 99999
Q ss_pred eCCChhhHHHHhhccccCCCCCCcc--eeeecCCChHHHHHhCCcccC--CCc---ceeEEEEEcCCCcEEEEEecCCC-
Q psy224 425 STDSHFSHLAWCNIPRNKGGLGDMA--IPILSDKSMSIARSYGVLNEE--TGI---PYRGLFIIDDKQNLRQITINDLP- 496 (547)
Q Consensus 425 s~d~~~~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~~~v~~~~--~g~---~~p~~~lid~~G~v~~~~~~~~~- 496 (547)
|+|+++.+++|.++. +++ ||+++|++.+++++||+..++ .|+ ..|++||| ++|+|++.++++..
T Consensus 90 S~D~~~~~~~f~~~~-------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~~~ 161 (176)
T 4f82_A 90 SVNDAFVMGAWGRDL-------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAPGK 161 (176)
T ss_dssp ESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCTTC
T ss_pred eCCCHHHHHHHHHHh-------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCCCC
Confidence 999999999999986 777 999999999999999998654 232 45899999 99999999987632
Q ss_pred -CCCCHHHHHHHH
Q psy224 497 -VGRSVDETLRLV 508 (547)
Q Consensus 497 -~~~~~~~il~~l 508 (547)
...+.+++|+.|
T Consensus 162 ~~~~~a~~vL~~L 174 (176)
T 4f82_A 162 FEVSDAASVLATL 174 (176)
T ss_dssp CSSSSHHHHHHTC
T ss_pred cchhhHHHHHHHh
Confidence 122455555543
No 57
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.91 E-value=4.5e-24 Score=203.51 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=131.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-------- 426 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-------- 426 (547)
.+|+++|+|++.+ .+| +.+++++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++|++|+.
T Consensus 33 ~~G~~aP~f~l~~-~~G--~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~ 108 (218)
T 3u5r_E 33 TLGTRAADFVLPD-AGG--NLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPE 108 (218)
T ss_dssp CTTCBCCCCCEEC-TTC--CEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGG
T ss_pred CCCCcCCCcEeEC-CCC--CEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence 3899999999999 899 69999999999 4999999 999999999999999999999999999999999
Q ss_pred CChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC-----CCCCH
Q psy224 427 DSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP-----VGRSV 501 (547)
Q Consensus 427 d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~-----~~~~~ 501 (547)
|+++..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++....+.. .....
T Consensus 109 d~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~ 175 (218)
T 3u5r_E 109 ETLERVGAEVKAY-------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTG 175 (218)
T ss_dssp GSHHHHHHHHHHH-------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCC
T ss_pred CCHHHHHHHHHHh-------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEeccccccccccccccCH
Confidence 5667788888876 899999999999999999998 48999999999999987632211 11234
Q ss_pred HHHHHHHHhhH------hhhhcCccccCCccCCCc
Q psy224 502 DETLRLVQAFQ------FVAEHGEVCPAGWKPGSK 530 (547)
Q Consensus 502 ~~il~~l~~l~------~~~~~~~~~~~~w~~~~~ 530 (547)
+++.+.|+++. ..+...++|+++|+++.+
T Consensus 176 ~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~~ 210 (218)
T 3u5r_E 176 ADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGNE 210 (218)
T ss_dssp HHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC--
T ss_pred HHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCCC
Confidence 56666666543 234457899999997744
No 58
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.90 E-value=6.3e-24 Score=213.55 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=136.3
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
++|+|+|++ .+| ++++|+||+||++||+|||+.|||+|+.|++.|++. ..++++|++||.|+++.+++|.+++
T Consensus 3 k~p~F~l~~-~~G--~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~~~~~~~f~~~~ 75 (322)
T 4eo3_A 3 RVKHFELLT-DEG--KTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDSVEALKRFKEKN 75 (322)
T ss_dssp BCCCCEEEE-TTS--CEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCCHHHHHHHHHHH
T ss_pred CCCCcEEEC-CCc--CEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCCHHHHHHHHHhh
Confidence 689999999 999 699999999999999999999999999999988652 3358999999999999999999987
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhhcCc
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGE 519 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~~~~ 519 (547)
+++||+|+|+++++++.||+... +...|++||||++|+|++.+.+ ....++++++|+.|++++. ...+.
T Consensus 76 -------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~~-v~~~~h~~~~l~~~~~~~~-~~~~~ 144 (322)
T 4eo3_A 76 -------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWRR-VKVEGHVQEVKEALDRLIE-EDLSL 144 (322)
T ss_dssp -------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEEES-CCSTTHHHHHHHHHHHHHH-HHTSC
T ss_pred -------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEEeC-CCccccHHHHHHHHhhhch-hhhHH
Confidence 99999999999999999999742 3467999999999999999964 4566689999999999984 45666
Q ss_pred cccCCccCCCcccccC
Q psy224 520 VCPAGWKPGSKTMKAD 535 (547)
Q Consensus 520 ~~~~~w~~~~~~~~~~ 535 (547)
....+|----+.+.+.
T Consensus 145 ~~~I~~RRSiR~F~~~ 160 (322)
T 4eo3_A 145 NKHIEWRRARRALKKD 160 (322)
T ss_dssp CHHHHHCCCCCCBCCC
T ss_pred HHHHHhhhccCCcCcc
Confidence 6666666666666654
No 59
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=99.90 E-value=5.5e-24 Score=206.18 Aligned_cols=149 Identities=18% Similarity=0.348 Sum_probs=129.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHHhhCCc-EEEEEeCCChhhH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEFKKINT-QVIACSTDSHFSH 432 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~~~~~~-~vi~is~d~~~~~ 432 (547)
.+|+++|+|++++..+|+.+.+++++ ++||++||+|||++|||+|+ .++|.|++++++|+++|+ +|++||.|+++.+
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~ 83 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVM 83 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHH
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHH
Confidence 38999999999983367323899999 89999999999999999999 999999999999999999 9999999999999
Q ss_pred HHHhhccccCCCCCCcc-eeeecCCChHHHHHhCCcccCC--Cc---ceeEEEEEcCCCcEEEEEecCCCCC-----CCH
Q psy224 433 LAWCNIPRNKGGLGDMA-IPILSDKSMSIARSYGVLNEET--GI---PYRGLFIIDDKQNLRQITINDLPVG-----RSV 501 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~--g~---~~p~~~lid~~G~v~~~~~~~~~~~-----~~~ 501 (547)
++|.+++ +++ ||+++|++++++++||+..... |. ..|++||| ++|+|++.+.++.+.+ .++
T Consensus 84 ~~~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~ 155 (241)
T 1nm3_A 84 NAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDA 155 (241)
T ss_dssp HHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSH
T ss_pred HHHHHhc-------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCH
Confidence 9999876 776 9999999999999999975332 22 46999999 9999999998876654 589
Q ss_pred HHHHHHHHhhH
Q psy224 502 DETLRLVQAFQ 512 (547)
Q Consensus 502 ~~il~~l~~l~ 512 (547)
+++++.|++.+
T Consensus 156 ~~il~~l~~~~ 166 (241)
T 1nm3_A 156 DTMLKYLAPQH 166 (241)
T ss_dssp HHHHHHHCTTS
T ss_pred HHHHHHhhhhc
Confidence 99999988653
No 60
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.90 E-value=1.7e-23 Score=195.78 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=131.0
Q ss_pred ccCCCCCCeeec-cccCCceeeEeccCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-------
Q psy224 356 ALEKPAPEFEGQ-AVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST------- 426 (547)
Q Consensus 356 ~~g~~~p~~~l~-~~~~G~~~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~------- 426 (547)
.+|+.+|+|++. + .+| +.+++++++|| ++||+|| ++|||+|..+++.|++++++|+++++++++|+.
T Consensus 19 ~~g~~~p~f~l~~~-~~G--~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~ 94 (196)
T 2ywi_A 19 PLGKQAPPFALTNV-IDG--NVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP 94 (196)
T ss_dssp CTTCBCCCCEEEET-TTC--CEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred CcCCcCCceeeeec-CCC--CEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 389999999999 8 888 69999999998 4999999 999999999999999999999998999999999
Q ss_pred -CChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-----CCCCC
Q psy224 427 -DSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-----PVGRS 500 (547)
Q Consensus 427 -d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-----~~~~~ 500 (547)
|+.+..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++.+.... ....+
T Consensus 95 ~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~ 161 (196)
T 2ywi_A 95 EDSPENMKKVAEEL-------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVT 161 (196)
T ss_dssp GGSHHHHHHHHHHH-------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCC
T ss_pred ccCHHHHHHHHHHc-------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCccC
Confidence 4567778888876 899999999999999999987 5899999999999999864221 11124
Q ss_pred HHHHHHHHHhhH------hhhhcCccccCCccCCC
Q psy224 501 VDETLRLVQAFQ------FVAEHGEVCPAGWKPGS 529 (547)
Q Consensus 501 ~~~il~~l~~l~------~~~~~~~~~~~~w~~~~ 529 (547)
.+++.+.|+++- ..+...++||++|++++
T Consensus 162 ~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 162 GESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp CHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence 456666665543 33445889999999874
No 61
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.89 E-value=2.5e-23 Score=193.43 Aligned_cols=154 Identities=19% Similarity=0.307 Sum_probs=127.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--------C
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--------D 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--------d 427 (547)
.+|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++ +++++|+. |
T Consensus 8 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d 82 (188)
T 2cvb_A 8 PLESPLIDAELPD-PRG--GRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPED 82 (188)
T ss_dssp CTTCBCCCCEEEC-TTS--CEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGG
T ss_pred CCCCCCCCceeec-CCC--CEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccccc
Confidence 3899999999999 889 699999999999999999 999999999999999999999987 99999998 4
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSV 501 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~ 501 (547)
+.+..++|.+++ +++||++.|.+.++++.|++. ..|++||||++|+|++.. ..+. ..+.
T Consensus 83 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~g--~~~~~~~~~g~~~~ 147 (188)
T 2cvb_A 83 APEKMAAFAEEH-------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHG--RVNDNPKDPSKVQS 147 (188)
T ss_dssp SHHHHHHHHHHH-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEE--CSSSCTTCGGGCCC
T ss_pred CHHHHHHHHHHh-------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEEE--ecCCccccccccCH
Confidence 567778888876 899999999999999999988 589999999999999883 2210 0123
Q ss_pred HHHHHHHHhhH------hhhhcCccccCCccCCC
Q psy224 502 DETLRLVQAFQ------FVAEHGEVCPAGWKPGS 529 (547)
Q Consensus 502 ~~il~~l~~l~------~~~~~~~~~~~~w~~~~ 529 (547)
+++.+.|+++. ..+...++|+++|++++
T Consensus 148 ~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~ 181 (188)
T 2cvb_A 148 HDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 181 (188)
T ss_dssp CHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence 34444444433 23445789999998664
No 62
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=99.89 E-value=7.7e-23 Score=186.39 Aligned_cols=144 Identities=20% Similarity=0.368 Sum_probs=125.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF-TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~-cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++| ||+|+.++|.|++++++| .++++++|+.|+++..++
T Consensus 19 ~~G~~~p~f~l~~-~~G--~~~~l~~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~~ 92 (167)
T 2jsy_A 19 KVGDQAPDFTVLT-NSL--EEKSLADMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQAR 92 (167)
T ss_dssp CTTSCCCCCEEEB-TTC--CEEEHHHHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTSC
T ss_pred CCCCcCCceEEEC-CCC--CEeeHHHhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHH
Confidence 3899999999999 889 699999999999999999 887 999999999999999999 699999999998877777
Q ss_pred HhhccccCCCCCCc-ceeeecC-CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDM-AIPILSD-KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL-PVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D-~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~~~~~~~il~~l~~l 511 (547)
|.+++ ++ +||++.| .+.++++.|++.....+...|++||||++|+|++.+.+.. ....+.+++++.|+++
T Consensus 93 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 93 WCGAN-------GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp CGGGS-------SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred HHHhc-------CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 77765 88 9999999 8899999999986443444699999999999999997653 3344678999998876
Q ss_pred H
Q psy224 512 Q 512 (547)
Q Consensus 512 ~ 512 (547)
.
T Consensus 166 l 166 (167)
T 2jsy_A 166 V 166 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 63
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=99.89 E-value=2.8e-23 Score=188.36 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=120.7
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcE-EEEEeCCChhhH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ-VIACSTDSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~-vi~is~d~~~~~ 432 (547)
..+|+++|+|++.+ +|.++.++++++ +||++||+|||+.|||+|+.|++.+++.+++|+++|++ |++||+|+++.+
T Consensus 14 ~~vGd~aPdf~l~~--~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~ 91 (171)
T 2xhf_A 14 IKVGDIIPDVLVYE--DVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVM 91 (171)
T ss_dssp CCTTCBCCCCEEEC--SSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHH
T ss_pred ccCcCCCCCeEEec--CCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH
Confidence 34999999999985 331258999995 99999999999999999999999999999999999996 999999999999
Q ss_pred HHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC-----CcceeEEEEEcCCCcEEEEEecCCCC---CCCHH
Q psy224 433 LAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET-----GIPYRGLFIIDDKQNLRQITINDLPV---GRSVD 502 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~-----g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~ 502 (547)
++|.++. ++ +||+|+|++.+++++||+..+.. ....|.+|||| +|+|++.++.+.+. ..+.+
T Consensus 92 ~~w~~~~-------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~ 163 (171)
T 2xhf_A 92 AAWGKTV-------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGLACLLSI 163 (171)
T ss_dssp HHHHHHH-------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHH
T ss_pred HHHHHhc-------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHH
Confidence 9999987 56 89999999999999999986542 13579999999 99999999866543 12356
Q ss_pred HHHHHHH
Q psy224 503 ETLRLVQ 509 (547)
Q Consensus 503 ~il~~l~ 509 (547)
++|+.|+
T Consensus 164 ~vL~~~~ 170 (171)
T 2xhf_A 164 QRQKENK 170 (171)
T ss_dssp HHC----
T ss_pred HHHHHhc
Confidence 6665554
No 64
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=99.89 E-value=4e-23 Score=189.10 Aligned_cols=144 Identities=19% Similarity=0.314 Sum_probs=116.7
Q ss_pred hccCCCCCCeeecccc----CC---ceeeEeccCC-CCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcE-EEEE
Q psy224 355 YALEKPAPEFEGQAVV----NG---QFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQ-VIAC 424 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~----~G---~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~-vi~i 424 (547)
..+|+++|+|++++ . +| +++.++++++ +||++||+|||++|||+|+.| +|.|++++++|+++|++ |++|
T Consensus 7 ~~~g~~aP~f~l~~-~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I 85 (171)
T 2pwj_A 7 TDILSAASNVSLQK-ARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV 85 (171)
T ss_dssp ---CCCSSSBCCCS-CEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred ccccCcCCCeEEec-ccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34788999999998 5 34 1258999997 998666666669999999999 99999999999999999 9999
Q ss_pred eCCChhhHHHHhhccccCCCCCCc--ceeeecCCChHHHHHhCCcccCC----C-cceeEEEEEcCCCcEEEEEecCCCC
Q psy224 425 STDSHFSHLAWCNIPRNKGGLGDM--AIPILSDKSMSIARSYGVLNEET----G-IPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 425 s~d~~~~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~~~~v~~~~~----g-~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
|.|+++..++|.+++ ++ +||+++|++++++++||+..... | ...|++|+|| +|+|++.+++..+.
T Consensus 86 s~d~~~~~~~~~~~~-------~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~ 157 (171)
T 2pwj_A 86 AINDPYTVNAWAEKI-------QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPS 157 (171)
T ss_dssp ESSCHHHHHHHHHHT-------TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTT
T ss_pred eCCCHHHHHHHHHHh-------CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCC
Confidence 999999999999876 64 89999999999999999985321 1 1257899999 99999999887654
Q ss_pred C---CCHHHHHHH
Q psy224 498 G---RSVDETLRL 507 (547)
Q Consensus 498 ~---~~~~~il~~ 507 (547)
+ .+.+++|+.
T Consensus 158 ~~~~~~~~~il~~ 170 (171)
T 2pwj_A 158 DVKVSGAETILGQ 170 (171)
T ss_dssp CCSSSSHHHHHHH
T ss_pred CCcccCHHHHHhc
Confidence 3 356666654
No 65
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=99.89 E-value=1.3e-23 Score=189.97 Aligned_cols=140 Identities=23% Similarity=0.303 Sum_probs=118.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCC--eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQ--YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk--~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~ 433 (547)
.+|+.+|+|++.+ .+| +++++++++|| ++||+||+++|||+|+.++|.|++++++|++++ +|++||.|+++.++
T Consensus 8 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~ 83 (159)
T 2a4v_A 8 EIGDPIPDLSLLN-EDN--DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQK 83 (159)
T ss_dssp CTTCBCCSCEEEC-TTS--CEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHH
T ss_pred CCCCCCCCeEEEC-CCC--CEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHH
Confidence 3899999999999 888 69999999886 899999989999999999999999999999989 99999999999999
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccC-CCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE-TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~-~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+|.+++ +++||++.|.+.++++.||+.... .+ ..|++||| ++|+|++.+.+..+.. +.+++++.|+
T Consensus 84 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g~~~~~-~~~~~~~~l~ 150 (159)
T 2a4v_A 84 KFQSKQ-------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVKISPEV-SVNDAKKEVL 150 (159)
T ss_dssp HHHHHH-------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEESCCHHH-HHHHHHHHHH
T ss_pred HHHHHh-------CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEccCCccc-cHHHHHHHHH
Confidence 999887 899999999999999999997422 12 25699999 9999999997654322 3344444433
No 66
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=99.88 E-value=3.6e-22 Score=183.57 Aligned_cols=143 Identities=23% Similarity=0.364 Sum_probs=119.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF-TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~-cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++| ||+|+.++|.|++++++ .+++|++|+.|+++..++
T Consensus 19 ~~G~~~P~f~l~~-~~G--~~v~l~~~~gk~vvl~F~-~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~~~ 91 (175)
T 1xvq_A 19 AVGSPAPAFTLTG-GDL--GVISSDQFRGKSVLLNIF-PSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQKR 91 (175)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSCEEEEEC-SCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHHTT
T ss_pred CcCCcCCCeEEEC-CCC--CEEeHHHcCCCEEEEEEE-eCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHHHH
Confidence 3899999999999 888 699999999999999999 676 99999999999999988 689999999999888877
Q ss_pred HhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccC---CCcceeEEEEEcCCCcEEEEEec-CCCCCCCHHHHHHHHH
Q psy224 435 WCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEE---TGIPYRGLFIIDDKQNLRQITIN-DLPVGRSVDETLRLVQ 509 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~---~g~~~p~~~lid~~G~v~~~~~~-~~~~~~~~~~il~~l~ 509 (547)
|.+++ ++ +||++.|.+.++++.|++.... .+...|++||||++|+|++.+.+ ......+++++++.++
T Consensus 92 ~~~~~-------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 92 FCGAE-------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp CC-------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred HHHHc-------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence 77765 88 8999999999999999997532 23445999999999999999974 4445557899988877
Q ss_pred hhH
Q psy224 510 AFQ 512 (547)
Q Consensus 510 ~l~ 512 (547)
+-.
T Consensus 165 ~~~ 167 (175)
T 1xvq_A 165 ATS 167 (175)
T ss_dssp HTC
T ss_pred hhc
Confidence 543
No 67
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=99.88 E-value=1.3e-22 Score=186.39 Aligned_cols=147 Identities=17% Similarity=0.275 Sum_probs=125.2
Q ss_pred cCCCCCCeeeccc-c---------CC--ceeeEeccC-CCCCeEEEEEEeCCCCCCcH-HHHHHHHHHHHHH-hhCCcE-
Q psy224 357 LEKPAPEFEGQAV-V---------NG--QFKNIKLSQ-YKGQYVVLFFYPLDFTFVCP-TEIIAFSDRAEEF-KKINTQ- 420 (547)
Q Consensus 357 ~g~~~p~~~l~~~-~---------~G--~~~~~~l~~-~~gk~~ll~f~~~~~cp~C~-~~~~~l~~~~~~~-~~~~~~- 420 (547)
+|+++|+|++++. . +| .++.+++++ ++||++||+|||+.|||+|+ .|++.+++.+++| +++|++
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~ 82 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD 82 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcE
Confidence 7999999999872 1 34 125899998 69999999999999999999 9999999999999 999995
Q ss_pred EEEEeCCChhhHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCC--C---cceeEEEEEcCCCcEEEEEecC
Q psy224 421 VIACSTDSHFSHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEET--G---IPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 421 vi~is~d~~~~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~--g---~~~p~~~lid~~G~v~~~~~~~ 494 (547)
|++||+|+++.+++|.+++ ++ +||+|+|++.+++++||+..+.. | ...|++|||| +|+|++.++.+
T Consensus 83 V~gvS~D~~~~~~~~~~~~-------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~ 154 (182)
T 1xiy_A 83 IYCITNNDIYVLKSWFKSM-------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEK 154 (182)
T ss_dssp EEEEESSCHHHHHHHHHHT-------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHc-------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeC
Confidence 9999999999999999986 66 79999999999999999986542 3 2478999999 99999999766
Q ss_pred CCC---------CCCHHHHHHHHHhh
Q psy224 495 LPV---------GRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~---------~~~~~~il~~l~~l 511 (547)
... ..+.+++|+.|++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vL~~L~~~ 180 (182)
T 1xiy_A 155 DKQHNIQTDPYDISTVNNVKEFLKNN 180 (182)
T ss_dssp SCCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred CcccccccCcccCCCHHHHHHHHHhc
Confidence 332 36899999998753
No 68
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2e-21 Score=173.57 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=116.3
Q ss_pred ccCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCC--cHHHHHHHHHHHHHH-hhCCcEEEEEeCCCh-
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFV--CPTEIIAFSDRAEEF-KKINTQVIACSTDSH- 429 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~--C~~~~~~l~~~~~~~-~~~~~~vi~is~d~~- 429 (547)
.+|+++|+|++.+ .+| +.++++ +++||++||+|| ++|||+ |+.++|.|.+++++| +++++++++|+.|..
T Consensus 6 ~~G~~~p~f~l~~-~~g--~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~ 81 (150)
T 3fw2_A 6 EIGKYAPFFSLPN-AKG--EKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDK 81 (150)
T ss_dssp STTSBCCCCCEEB-TTC--CEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCH
T ss_pred cCCCcCCccEeEC-CCC--CEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCH
Confidence 4899999999999 899 699999 999999999999 999999 999999999999999 888999999999864
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
+..++|.+++ +++||++.|. +.++.+.|++. .+|++||||++|+|++.+. +.+++.+
T Consensus 82 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~ 141 (150)
T 3fw2_A 82 QQWKDAIKRD-------TLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL-------RGEELKK 141 (150)
T ss_dssp HHHHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHH
T ss_pred HHHHHHHHHh-------CCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC-------CHHHHHH
Confidence 6777888776 8999999998 57999999998 5899999999999999883 3455555
Q ss_pred HHHhh
Q psy224 507 LVQAF 511 (547)
Q Consensus 507 ~l~~l 511 (547)
.|+++
T Consensus 142 ~l~~l 146 (150)
T 3fw2_A 142 KIENI 146 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 69
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=99.86 E-value=1.5e-21 Score=172.48 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=114.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHhhCCcEEEEEeCC-ChhhH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD---RAEEFKKINTQVIACSTD-SHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~~~vi~is~d-~~~~~ 432 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..++|.|.+ ++++|+++++++++|+.| ..+..
T Consensus 3 ~G~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~ 78 (142)
T 3ewl_A 3 AGMKAADFTYVT-VHG--DNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEW 78 (142)
T ss_dssp TTSBCCCCEEEC-TTC--CEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHH
T ss_pred CCCcCCCCEEEC-CCC--CEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHH
Confidence 799999999999 889 699999999999999999 9999999999999998 999999999999999998 45666
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHH--HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIAR--SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~--~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++|.+++ +++||++.|.+..+.. .|++. .+|++||||++|+|++.. ...+++.+.|++
T Consensus 79 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~-------~~~~~l~~~l~~ 138 (142)
T 3ewl_A 79 ATKAVYM-------PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILKD-------TSMEQLIDYLAT 138 (142)
T ss_dssp HHHHTTS-------CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEECS-------CCHHHHHHHHHC
T ss_pred HHHHHHc-------CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEecC-------CCHHHHHHHHHH
Confidence 7777765 8999999999988877 89987 589999999999998732 246777777766
Q ss_pred hH
Q psy224 511 FQ 512 (547)
Q Consensus 511 l~ 512 (547)
++
T Consensus 139 ~~ 140 (142)
T 3ewl_A 139 QA 140 (142)
T ss_dssp --
T ss_pred Hc
Confidence 54
No 70
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.86 E-value=5.9e-22 Score=178.45 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=118.2
Q ss_pred cCCCCCCeeeccc-cCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcEEEEEeCC-------
Q psy224 357 LEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQVIACSTD------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~-~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~vi~is~d------- 427 (547)
.|.++|+|++.++ .+| +.+++++++||++||+|| ++|||+|..+ +|.|++++++|+++++++++|+.|
T Consensus 2 ~g~~aP~f~l~~~~~~g--~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSA--TDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAM 78 (158)
T ss_dssp CCEECCCCCEEEEESCS--SCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS
T ss_pred CCCcCCCceehhhhcCC--CccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccC
Confidence 5788999999983 366 699999999999999999 9999999997 999999999999889999999964
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCCh-----HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSM-----SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVD 502 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~-----~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~ 502 (547)
+.+..++|.+++ +++||++.|.+. ++++.|++. .+|++||||++|+|++.+.+..+ .+
T Consensus 79 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~ 141 (158)
T 3eyt_A 79 TPISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQMR------GTPSLLLIDKAGDLRAHHFGDVS----EL 141 (158)
T ss_dssp CHHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTCC------SSSEEEEECTTSEEEEEEESCCC----HH
T ss_pred CHHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HH
Confidence 667788888876 899999999887 799999997 58999999999999999977653 45
Q ss_pred HHHHHHHhhH
Q psy224 503 ETLRLVQAFQ 512 (547)
Q Consensus 503 ~il~~l~~l~ 512 (547)
++.+.|+++-
T Consensus 142 ~l~~~i~~ll 151 (158)
T 3eyt_A 142 LLGAEIATLL 151 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 71
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=99.86 E-value=2.8e-21 Score=173.16 Aligned_cols=139 Identities=21% Similarity=0.346 Sum_probs=123.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--hhhHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS--HFSHL 433 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~--~~~~~ 433 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|++.++++++|+.|. .+..+
T Consensus 3 ~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~ 78 (154)
T 3kcm_A 3 LEENPAPDFTLNT-LNG--EVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVE 78 (154)
T ss_dssp CTTSBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHH
T ss_pred CCCCCCCCeEEEc-CCC--CEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHH
Confidence 4899999999999 888 699999999999999999 99999999999999999999998899999999987 66778
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+|.+++ +++||++.|.+..+.+.|++. .+|++||||++|+|++.+.+..+. +.+++.+.|+++..
T Consensus 79 ~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 79 EFFRKT-------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAMEW--DHPEVIAFLNNELS 143 (154)
T ss_dssp HHHHHH-------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHTC--
T ss_pred HHHHHc-------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCcc--ccHHHHHHHHHHHH
Confidence 888876 899999999999999999998 589999999999999999776543 34677777777664
No 72
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=99.86 E-value=4e-21 Score=175.94 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=119.4
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhCC--cEEEEEeCC----Ch
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKIN--TQVIACSTD----SH 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~~--~~vi~is~d----~~ 429 (547)
+|..+|+|++.+ .+| +.+++++++||++||+|| ++||| +|+.+++.|.+++++|++++ ++|++|+.| ++
T Consensus 9 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~ 84 (174)
T 1xzo_A 9 LNYEVEPFTFQN-QDG--KNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP 84 (174)
T ss_dssp CCEECCCCEEEC-TTS--CEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred cccccCCcEEEc-CCC--CEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCH
Confidence 899999999999 889 699999999999999999 99999 99999999999999999876 999999997 45
Q ss_pred hhHHHHhhccccCCCCCCcce---eeecCCChHHHHHhCCc-----cc-----CCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAI---PILSDKSMSIARSYGVL-----NE-----ETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~f---p~l~D~~~~~~~~~~v~-----~~-----~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
+..++|.+++ +++| +++.|++.++.+.|++. .. ......|++||||++|+|++.+.+..+
T Consensus 85 ~~~~~~~~~~-------~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~ 157 (174)
T 1xzo_A 85 KQLKKFAANY-------PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN 157 (174)
T ss_dssp HHHHHHHTTS-------CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS
T ss_pred HHHHHHHHHc-------CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC
Confidence 6777888765 7788 99999888887777641 00 012347999999999999999976653
Q ss_pred CCCCHHHHHHHHHhhH
Q psy224 497 VGRSVDETLRLVQAFQ 512 (547)
Q Consensus 497 ~~~~~~~il~~l~~l~ 512 (547)
.+.+++++.|+++-
T Consensus 158 --~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 158 --TPYDDIISDVKSAS 171 (174)
T ss_dssp --CCHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHH
Confidence 35678888888664
No 73
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.86 E-value=7.3e-22 Score=178.15 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=120.4
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHhhCCcEEEEEeC-------C
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTE-IIAFSDRAEEFKKINTQVIACST-------D 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~-~~~l~~~~~~~~~~~~~vi~is~-------d 427 (547)
+.|.++|+|++.++.+| +.+++++++||++||+|| ++|||+|..+ +|.|++++++|+++++++++|+. +
T Consensus 4 ~~g~~~p~~~~~~~~~g--~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 4 LDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVM 80 (160)
T ss_dssp CTTCCBCCCCEEEESSS--CCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS
T ss_pred cCCCcCCCcccccccCC--CccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccC
Confidence 36889999999987788 699999999999999999 9999999996 99999999999988999999997 5
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCChH------HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCH
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS------IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSV 501 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~------~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~ 501 (547)
+.+..++|.+++ +++||++.|.+.. +++.|++. .+|++||||++|+|++.+.|..+ .
T Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~ 143 (160)
T 3lor_A 81 TPEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKYRLE------GTPSIILADRKGRIRQVQFGQVD----D 143 (160)
T ss_dssp CHHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCC----H
T ss_pred CHHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhcccC------ccceEEEECCCCcEEEEecCcCC----H
Confidence 677888888876 8999999999887 99999997 58999999999999999977653 4
Q ss_pred HHHHHHHHhhH
Q psy224 502 DETLRLVQAFQ 512 (547)
Q Consensus 502 ~~il~~l~~l~ 512 (547)
+++.+.|+++-
T Consensus 144 ~~l~~~i~~ll 154 (160)
T 3lor_A 144 FVLGLLLGSLL 154 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 74
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=99.86 E-value=2.6e-21 Score=171.14 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=112.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH---HHHHHhhCCcEEEEEeCCCh-hh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD---RAEEFKKINTQVIACSTDSH-FS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~---~~~~~~~~~~~vi~is~d~~-~~ 431 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++||++|+.++|.|.+ ++++|+++++++++|+.|.. +.
T Consensus 6 ~~G~~ap~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~ 81 (142)
T 3eur_A 6 RLGTKALNFTYTL-DSG--VKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDE 81 (142)
T ss_dssp CTTSBCCCCEEEE-TTS--CEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHH
T ss_pred cCCCccCCcEEEc-CCC--CEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHH
Confidence 4899999999999 889 699999999999999999 9999999999999999 99999999999999999864 45
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChH--HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMS--IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~--~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+++.+++ +++|+.+.|.+.. +.+.|++. .+|++||||++|+|++...+ .+++.+.|+
T Consensus 82 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~ 141 (142)
T 3eur_A 82 WKKHRNDF-------AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDAT-------LQKVEQYLA 141 (142)
T ss_dssp HHHHGGGS-------CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEEC-------HHHHHHHHH
T ss_pred HHHHHHhc-------ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCCC-------HHHHHHHHh
Confidence 56666655 7899999998755 67889887 58999999999999998852 355555554
No 75
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=99.85 E-value=3.7e-21 Score=173.46 Aligned_cols=138 Identities=20% Similarity=0.337 Sum_probs=122.8
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLA 434 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~ 434 (547)
..+|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|++.++.+++|+.|. +.++
T Consensus 15 ~~~G~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~~ 88 (158)
T 3hdc_A 15 VRTGALAPNFKLPT-LSG--ENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RFPE 88 (158)
T ss_dssp CCTTSBCCCCEEEC-TTS--CEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SCCG
T ss_pred cCCCCcCCCceeEc-CCC--CEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HHHH
Confidence 34899999999999 888 699999999999999999 99999999999999999999998899999999987 4556
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
|.+++ +++||++.|.+.++.+.|++. .+|++||||++|+|++.+.|..+.. .+++++.+++.+.
T Consensus 89 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~~~~--~~~~~~~~~~~~~ 152 (158)
T 3hdc_A 89 KYRRA-------PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGGIEWD--APKVVSYLKSLEG 152 (158)
T ss_dssp GGGGC-------CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCCTT--SHHHHHHHHTTC-
T ss_pred HHHHc-------CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCCCccc--hHHHHHHHHhhcc
Confidence 66654 899999999999999999998 5899999999999999998776544 5888888887764
No 76
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=99.85 E-value=3.7e-21 Score=180.77 Aligned_cols=158 Identities=15% Similarity=0.204 Sum_probs=116.7
Q ss_pred ccCCCC--CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhC---CcEEEEEeCC--
Q psy224 356 ALEKPA--PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKI---NTQVIACSTD-- 427 (547)
Q Consensus 356 ~~g~~~--p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vi~is~d-- 427 (547)
.+|+++ |+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|+++ +++|++||.|
T Consensus 14 ~~g~~~~~p~f~l~d-~~G--~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~ 89 (200)
T 2b7k_A 14 GYGKPSLGGPFHLED-MYG--NEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA 89 (200)
T ss_dssp --CCCCCCCCCEEEE-TTS--CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred ccCCCCcCCCEEEEc-CCC--CEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC
Confidence 378885 9999999 889 699999999999999999 999997 999999999999999854 8999999998
Q ss_pred --ChhhHHHHhhccccCCCCCCcceeeecC---CChHHHHHhCCcccCC-----C-----cceeEEEEEcCCCcEEEEEe
Q psy224 428 --SHFSHLAWCNIPRNKGGLGDMAIPILSD---KSMSIARSYGVLNEET-----G-----IPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~-----g-----~~~p~~~lid~~G~v~~~~~ 492 (547)
+++..++|.+++ +.+|+.+.+ ...++++.||+....- + ...|++||||++|+|++.+.
T Consensus 90 ~d~~~~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~ 162 (200)
T 2b7k_A 90 RDSPAVLKEYLSDF-------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 162 (200)
T ss_dssp TCCHHHHHHHHTTS-------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred CCCHHHHHHHHHHc-------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence 466777888765 788888764 3478999999873110 0 11358999999999999997
Q ss_pred cCCCCCCCHHHHHHHHHhhHhhhhcCccccCCc
Q psy224 493 NDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGW 525 (547)
Q Consensus 493 ~~~~~~~~~~~il~~l~~l~~~~~~~~~~~~~w 525 (547)
+..+.....+++.+.|+.+.. ...+..|+.+|
T Consensus 163 g~~~~~~~~~~i~~~l~~l~~-~~~~~~~~~~~ 194 (200)
T 2b7k_A 163 RNYDEKTGVDKIVEHVKSYVP-AEQRAKQKEAW 194 (200)
T ss_dssp TTCCTTHHHHHHHHHHHHCCC-C----------
T ss_pred CCCCHHHHHHHHHHHHHHhhh-hhhcchhHHHH
Confidence 666555556677777777664 44577899999
No 77
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.85 E-value=7.1e-21 Score=170.29 Aligned_cols=137 Identities=17% Similarity=0.283 Sum_probs=121.0
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CChhhH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DSHFSH 432 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~~~~~ 432 (547)
..+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++++++++|+. |+.+..
T Consensus 2 ~~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~ 77 (153)
T 2l5o_A 2 SLDSKTAPAFSLPD-LHG--KTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77 (153)
T ss_dssp --CCTTCCSCEEEC-TTS--CEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHH
T ss_pred CCCCCCCCCcEeec-CCC--CCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHH
Confidence 34899999999999 889 699999999999999999 999999999999999999999998999999995 567788
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++|.+++ +++|+++.|.+.++.+.|++. .+|+++|||++|+++..+.+.. +.+++.+.|+++-
T Consensus 78 ~~~~~~~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll 140 (153)
T 2l5o_A 78 RQYVKDY-------GLPFTVMYDADKAVGQAFGTQ------VYPTSVLIGKKGEILKTYVGEP----DFGKLYQEIDTAW 140 (153)
T ss_dssp HHHHHHT-------TCCSEEEECSSCHHHHHHTCC------SSSEEEEECSSSCCCEEEESSC----CHHHHHHHHHHHH
T ss_pred HHHHHHc-------CCCceEEcCchHHHHHHcCCC------ccCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence 8888876 899999999999999999997 5899999999999999987654 4667777777654
No 78
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.85 E-value=5.7e-21 Score=170.67 Aligned_cols=135 Identities=20% Similarity=0.351 Sum_probs=120.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~~ 435 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.| .++..++|
T Consensus 2 ~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~ 77 (151)
T 2f9s_A 2 EGSDAPNFVLED-TNG--KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNF 77 (151)
T ss_dssp CCEECCCCEEEC-TTC--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHH
T ss_pred CCCcCCcceeEc-CCC--CEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence 688999999999 888 699999999999999999 9999999999999999999999889999999986 45777888
Q ss_pred hhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++ +++||++.|.+.++.+.|++. .+|+++|||++|+++..+.|.. +.+++.+.|+++.
T Consensus 78 ~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ll 137 (151)
T 2f9s_A 78 MKSY-------GVNFPVVLDTDRQVLDAYDVS------PLPTTFLINPEGKVVKVVTGTM----TESMIHDYMNLIK 137 (151)
T ss_dssp HHHH-------TCCSCEEEETTSHHHHHTTCC------SSCEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred HHHc-------CCCceEEECCchHHHHhcCCC------CCCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHHH
Confidence 8876 899999999999999999997 5899999999999999997654 4566777777654
No 79
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.85 E-value=4.8e-21 Score=171.72 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=112.7
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhh-HHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFS-HLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~-~~~ 434 (547)
..|+.+|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|+++++|+.|+..+ .++
T Consensus 10 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~ 85 (152)
T 2lrt_A 10 IKEASIIDIQLKD-LKG--NTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKT 85 (152)
T ss_dssp SCTTCSCCCCEEB-TTS--CEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHH
T ss_pred ccCCCCCCeEEEc-CCC--CEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHH
Confidence 4788999999999 889 699999999999999999 99999999999999999999999999999999987532 333
Q ss_pred HhhccccCCCCCCcceeeecCCChH---HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMS---IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~---~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+ .++||++.|.+.. +.+.|++. ..|++||||++|+|++.+.+.. +.++.+..+.+
T Consensus 86 ~~~---------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~e~~~~~~~~ 145 (152)
T 2lrt_A 86 SAD---------NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGENIK----DLDEAIKKLLE 145 (152)
T ss_dssp HHT---------TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTTCS----CHHHHHHHHHG
T ss_pred HHh---------CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCCHH----HHHHHHHHHHh
Confidence 332 5789999999876 99999998 5899999999999999885443 56666666543
No 80
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=99.85 E-value=5.4e-21 Score=171.20 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=109.3
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAW 435 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~ 435 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++|+++++++++|+.|. .+..++|
T Consensus 5 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~ 80 (152)
T 2lrn_A 5 TGSVAPAITGID-LKG--NSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKA 80 (152)
T ss_dssp TTEECCCCEEEC-SSS--CEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHH
T ss_pred CCCcCCCceeEc-CCC--CEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHH
Confidence 899999999999 888 699999999999999999 99999999999999999999998899999999984 5666777
Q ss_pred hhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 436 CNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 436 ~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
.++. +++||++.|. +.++++.|++. .+|+++|||++|+|++.+.
T Consensus 81 ~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 127 (152)
T 2lrn_A 81 IEED-------KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKEL 127 (152)
T ss_dssp HHHH-------TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECC
T ss_pred HHHh-------CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeC
Confidence 7765 8999999998 68999999997 5899999999999999873
No 81
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=99.85 E-value=1.3e-21 Score=173.35 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=103.2
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+.+|+|++ + .+| +.+++++++||++||+|| ++||++|..++|.|++++++|++++++|++|+.|. .+..++
T Consensus 8 ~~G~~~P~f~l-~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 82 (143)
T 4fo5_A 8 NPGDLAPRIEF-L-GND--AKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTE 82 (143)
T ss_dssp STTSBCCCCCC---------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHH
T ss_pred CCcccCCceEE-c-CCC--CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHH
Confidence 38999999999 8 888 699999999999999999 99999999999999999999998899999999994 556777
Q ss_pred HhhccccCCCCCCcce-eeecCCC---hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 435 WCNIPRNKGGLGDMAI-PILSDKS---MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~f-p~l~D~~---~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
+.+++ +++| +.+.|.. .++++.|++. .+|++||||++|+|++.+.
T Consensus 83 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 83 TVKID-------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAANV 131 (143)
T ss_dssp HHHHH-------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEESC
T ss_pred HHHHh-------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEccC
Confidence 88776 8999 7888874 6899999998 5899999999999998863
No 82
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=99.85 E-value=4.3e-21 Score=174.71 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=104.9
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------ 428 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------ 428 (547)
..+|..+|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|+.|.
T Consensus 5 ~~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~ 80 (169)
T 2v1m_A 5 HKSWNSIYEFTVKD-ING--VDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEP 80 (169)
T ss_dssp --CCCSGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred ccCCcccccceeec-CCC--CCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCC
Confidence 34899999999999 899 699999999999999999 99999999999999999999999999999999863
Q ss_pred --hhhHHHH-hhccccCCCCCCcceeeec--CCChHHHH-Hh--------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 429 --HFSHLAW-CNIPRNKGGLGDMAIPILS--DKSMSIAR-SY--------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 --~~~~~~~-~~~~~~~~~~~~~~fp~l~--D~~~~~~~-~~--------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
++..++| .+++ +++||++. |.++...+ .| ++.... ....|++||||++|+|++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g~ 152 (169)
T 2v1m_A 81 WAEAEIKKFVTEKY-------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSPT 152 (169)
T ss_dssp SCHHHHHHHHHHHH-------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECTT
T ss_pred CCHHHHHHHHHHhc-------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCCC
Confidence 4567777 4665 89999996 65544321 23 433100 11358999999999999999766
Q ss_pred CCC
Q psy224 495 LPV 497 (547)
Q Consensus 495 ~~~ 497 (547)
.+.
T Consensus 153 ~~~ 155 (169)
T 2v1m_A 153 TAP 155 (169)
T ss_dssp SCG
T ss_pred CCH
Confidence 543
No 83
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.85 E-value=2.2e-21 Score=172.35 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=119.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-ChhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~~~~ 434 (547)
.+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.| ..+..++
T Consensus 6 ~~G~~~p~~~l~~-~~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 81 (148)
T 3hcz_A 6 LLGKKAPNLYMTD-TTG--TYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLK 81 (148)
T ss_dssp CTTSBCCCCCCBC-TTS--CBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHH
T ss_pred CCCCcCCceEEec-CCC--CEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHH
Confidence 4899999999999 888 699999999999999999 9999999999999999999999989999999998 5577888
Q ss_pred HhhccccCCCCCCcc-eeeecCCChH--HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDMA-IPILSDKSMS--IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~-fp~l~D~~~~--~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|.+++ +++ |+++.|.+.. +++.|++. .+|+++|||++|++++.+.+. .+++++++.+.++
T Consensus 82 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 82 FIRSK-------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDDFLVQYEKS 144 (148)
T ss_dssp HHHHH-------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHHHHHHHHHH
T ss_pred HHHHc-------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHHHHHHHHHH
Confidence 88876 788 9999999877 99999998 589999999999999988554 3567777766543
No 84
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=99.85 E-value=2.5e-20 Score=166.53 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=120.9
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+++|+|++.+ +| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|. .+...+
T Consensus 4 ~~G~~~P~f~l~~--~g--~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 78 (152)
T 3gl3_A 4 DKGDKAPDFALPG--KT--GVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMK 78 (152)
T ss_dssp CTTSBCCCCEEEB--SS--SEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHH
T ss_pred CCCCcCCceEeeC--CC--CeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHH
Confidence 3899999999998 66 489999999999999999 99999999999999999999999999999999984 566778
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ +++||++.|.+.++.+.|++. .+|++||||++|+|++.+.+..+. +.+++.+.|++..
T Consensus 79 ~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 79 FLAQV-------PAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGFRPA--DKEALEQQILAAL 141 (152)
T ss_dssp HHHHS-------CCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCCTT--THHHHHHHHHHHT
T ss_pred HHHHc-------CCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccCCCc--CHHHHHHHHHHHH
Confidence 88776 899999999999999999997 589999999999999999766432 4577777777654
No 85
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=99.84 E-value=1.1e-20 Score=174.82 Aligned_cols=138 Identities=15% Similarity=0.259 Sum_probs=119.4
Q ss_pred cCCCCCCeeecccc--CCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCc------EEEEEeCCC
Q psy224 357 LEKPAPEFEGQAVV--NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT------QVIACSTDS 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~--~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~------~vi~is~d~ 428 (547)
.|.++|+|++.+ . +| +.+++++++||++||+|| ++|||+|+.+++.|++++++|+++++ ++++|+.|.
T Consensus 33 ~g~~~p~f~l~~-~~~~g--~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~ 108 (183)
T 3lwa_A 33 DRQQLPDIGGDS-LMEEG--TQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD 108 (183)
T ss_dssp GCCCCCCCEEEB-SSSTT--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC
T ss_pred cCCCCCceeccc-cccCC--cEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC
Confidence 789999999999 7 88 699999999999999999 99999999999999999999999999 999999987
Q ss_pred --hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy224 429 --HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506 (547)
Q Consensus 429 --~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~ 506 (547)
++..++|.+++ +++||++.|.+..+.+.|+... ...+|++||||++|+|++.+.+.. +.+++.+
T Consensus 109 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~ 174 (183)
T 3lwa_A 109 YSRDIAQDFVTDN-------GLDYPSIYDPPFMTAASLGGVP---ASVIPTTIVLDKQHRPAAVFLREV----TSKDVLD 174 (183)
T ss_dssp CCHHHHHHHHHHT-------TCCSCEEECTTCGGGGGTTTCC---TTCCSEEEEECTTSCEEEEECSCC----CHHHHHH
T ss_pred CCHHHHHHHHHHc-------CCCccEEECCcchHHHHhccCC---CCCCCeEEEECCCCcEEEEEcCCC----CHHHHHH
Confidence 77788888876 8999999999999999987321 125899999999999999996654 4567777
Q ss_pred HHHhhH
Q psy224 507 LVQAFQ 512 (547)
Q Consensus 507 ~l~~l~ 512 (547)
.|+++-
T Consensus 175 ~l~~ll 180 (183)
T 3lwa_A 175 VALPLV 180 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 86
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=99.84 E-value=8e-21 Score=175.36 Aligned_cols=148 Identities=12% Similarity=0.163 Sum_probs=115.0
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-------
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD------- 427 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d------- 427 (547)
...|..+|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|
T Consensus 12 ~~~~~~~p~f~l~d-~~G--~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~ 87 (180)
T 3kij_A 12 KPKINSFYAFEVKD-AKG--RTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP 87 (180)
T ss_dssp CCCCCCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCC
T ss_pred cCCcCcccceEEec-CCC--CEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCC
Confidence 34899999999999 899 699999999999999999 9999999999999999999999999999999975
Q ss_pred -ChhhHHHHhhc-cccCCCCCCcceeeecCCC--hH-HHHHhCCcccCCCcceeE----EEEEcCCCcEEEEEecCCCCC
Q psy224 428 -SHFSHLAWCNI-PRNKGGLGDMAIPILSDKS--MS-IARSYGVLNEETGIPYRG----LFIIDDKQNLRQITINDLPVG 498 (547)
Q Consensus 428 -~~~~~~~~~~~-~~~~~~~~~~~fp~l~D~~--~~-~~~~~~v~~~~~g~~~p~----~~lid~~G~v~~~~~~~~~~~ 498 (547)
+++..++|.++ + +++||++.+.+ .. ....|+......+ ..|+ +||||++|+|+..+.+..+..
T Consensus 88 d~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~p~~~~~~~lid~~G~i~~~~~g~~~~~ 159 (180)
T 3kij_A 88 RPSKEVESFARKNY-------GVTFPIFHKIKILGSEGEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWRPEEPIE 159 (180)
T ss_dssp SCHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTCCHHHHHHHHHHT-CCCSSTTCEEEECTTSCEEEEECTTCCGG
T ss_pred CCHHHHHHHHHHhc-------CCCCceeeeeeccCccccHHHHHHHhcCC-CCccccceEEEECCCCCEEEEECCCCCHH
Confidence 56777888887 6 89999976422 11 1011111100000 2566 999999999999998777766
Q ss_pred CCHHHHHHHHHhhHhh
Q psy224 499 RSVDETLRLVQAFQFV 514 (547)
Q Consensus 499 ~~~~~il~~l~~l~~~ 514 (547)
...+++.+.|+++...
T Consensus 160 ~l~~~i~~lL~~~~~~ 175 (180)
T 3kij_A 160 VIRPDIAALVRQVIIK 175 (180)
T ss_dssp GTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5566666777766543
No 87
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.84 E-value=7.5e-21 Score=174.89 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=116.1
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC-CChhhHH
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST-DSHFSHL 433 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~-d~~~~~~ 433 (547)
..+|+++|+|++.+ .+|+.+.+++++++||++||+|| ++|||+|..++|.|++++++ ++++++|+. |+.+..+
T Consensus 30 ~~~G~~~P~f~l~~-~~g~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~~~ 103 (176)
T 3kh7_A 30 ALIGKPFPAFDLPS-VQDPARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAAAI 103 (176)
T ss_dssp TTTTSBCCCCEEEB-SSCTTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHHHH
T ss_pred cccCCcCCCcEecc-cCCCCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHHHH
Confidence 45999999999999 77743589999999999999999 99999999999999998875 899999995 5678888
Q ss_pred HHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+++ +++|+ ++.|.+.++++.|++. .+|++||||++|+|++.+.+..+.....+.+.+.|++++
T Consensus 104 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 104 KWLNEL-------HNPYLLSISDADGTLGLDLGVY------GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp HHHHHT-------TCCCSEEEEETTCHHHHHHTCC------SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred HHHHHc-------CCCCceEEECCcchHHHHcCCC------CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 888876 88998 5889999999999998 589999999999999999877654322333334444444
No 88
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=176.73 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=108.1
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|+++|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 24 ~~g~~~p~f~l~~-~~G--~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~ 99 (181)
T 2p31_A 24 QQEQDFYDFKAVN-IRG--KLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD 99 (181)
T ss_dssp ---CCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred CcCCccCceEeec-CCC--CEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCC
Confidence 3899999999999 889 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhc-cccCCCCCCcceeeecC--CChHHHH---HhCCcccCCCccee-------EEEEEcCCCcEEEEEecC
Q psy224 428 SHFSHLAWCNI-PRNKGGLGDMAIPILSD--KSMSIAR---SYGVLNEETGIPYR-------GLFIIDDKQNLRQITIND 494 (547)
Q Consensus 428 ~~~~~~~~~~~-~~~~~~~~~~~fp~l~D--~~~~~~~---~~~v~~~~~g~~~p-------~~~lid~~G~v~~~~~~~ 494 (547)
+++..++|.++ + +++||++.| .++.... .|++. ..| ++||||++|+|++.+.+.
T Consensus 100 ~~~~~~~~~~~~~-------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~g~ 166 (181)
T 2p31_A 100 SNKEIESFARRTY-------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWDPT 166 (181)
T ss_dssp CHHHHHHHHHHHH-------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHhhc-------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeCCC
Confidence 45677788876 5 889999964 3332211 23333 356 899999999999999654
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy224 495 LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~l 511 (547)
. +.+++.+.|+++
T Consensus 167 ~----~~~~l~~~i~~l 179 (181)
T 2p31_A 167 V----SVEEVRPQITAL 179 (181)
T ss_dssp S----CHHHHHHHHHTT
T ss_pred C----CHHHHHHHHHHH
Confidence 3 356777776654
No 89
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=99.84 E-value=3.5e-20 Score=167.78 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhh----CCcEEEEEeCCC----hh
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKK----INTQVIACSTDS----HF 430 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~~~vi~is~d~----~~ 430 (547)
.+|+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|++ .++++++|+.|+ ++
T Consensus 2 ~ap~f~l~~-~~G--~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~ 77 (164)
T 2ggt_A 2 LGGPFSLTT-HTG--ERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 77 (164)
T ss_dssp CCCCCEEEE-TTS--CEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH
T ss_pred CCCCeEEEe-CCC--CEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH
Confidence 579999999 889 699999999999999999 999998 99999999999999987 489999999986 56
Q ss_pred hHHHHhhccccCCCCCCcceeeec---CCChHHHHHhCCcccCCCccee---------------EEEEEcCCCcEEEEEe
Q psy224 431 SHLAWCNIPRNKGGLGDMAIPILS---DKSMSIARSYGVLNEETGIPYR---------------GLFIIDDKQNLRQITI 492 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~fp~l~---D~~~~~~~~~~v~~~~~g~~~p---------------~~~lid~~G~v~~~~~ 492 (547)
..++|.+++ +++|+++. |...++++.|++.. .| ++||||++|+|++.+.
T Consensus 78 ~~~~~~~~~-------~~~~~~l~~~~d~~~~~~~~~~v~~------~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 144 (164)
T 2ggt_A 78 AIANYVKEF-------SPKLVGLTGTREEVDQVARAYRVYY------SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG 144 (164)
T ss_dssp HHHHHHHTT-------CSSCEEEECCHHHHHHHHHTTTCCE------EEEEECTTSCEEEEECCEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHc-------CCCeEEEeCCHHHHHHHHHhcCeEE------EecCCCCCCCeeEeccceEEEECCCCeEEEEeC
Confidence 677888765 88999984 44578999999873 55 8999999999999996
Q ss_pred cCCCCCCCHHHHHHHHHhhH
Q psy224 493 NDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 493 ~~~~~~~~~~~il~~l~~l~ 512 (547)
+.. +.+++.+.|+++-
T Consensus 145 g~~----~~~~l~~~l~~ll 160 (164)
T 2ggt_A 145 QNK----RKGEIAASIATHM 160 (164)
T ss_dssp TTC----CHHHHHHHHHHHH
T ss_pred CCC----CHHHHHHHHHHHH
Confidence 554 3567777777654
No 90
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=99.84 E-value=1.8e-20 Score=176.97 Aligned_cols=136 Identities=7% Similarity=0.038 Sum_probs=102.3
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.++.+|+|++++ .+ | +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|
T Consensus 22 ~~~~~p~f~l~~-~~~G--~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d 97 (208)
T 2f8a_A 22 SMQSVYAFSARP-LAGG--EPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENA 97 (208)
T ss_dssp CCCCGGGCEECB-TTCS--SCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCS
T ss_pred hcCccCceEeee-CCCC--CCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCC
Confidence 678899999999 88 8 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeecCCC--h----HHHH----HhCCc--------cc-----------CCCcceeEE
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILSDKS--M----SIAR----SYGVL--------NE-----------ETGIPYRGL 478 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~--~----~~~~----~~~v~--------~~-----------~~g~~~p~~ 478 (547)
+++.+++|.+..+. ....+++||++.|.+ + .+.+ .++.. .. ......|++
T Consensus 98 ~~~~i~~f~~~~~~-~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~t 176 (208)
T 2f8a_A 98 KNEEILNSLKYVRP-GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEK 176 (208)
T ss_dssp CHHHHHHHHHHTSS-CTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCE
T ss_pred CHHHHHHHHHhccc-ccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceE
Confidence 24566777762100 001189999997533 1 1222 22210 00 001134999
Q ss_pred EEEcCCCcEEEEEecCCCC
Q psy224 479 FIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 479 ~lid~~G~v~~~~~~~~~~ 497 (547)
||||++|+|++.+.+..+.
T Consensus 177 flID~~G~i~~~~~g~~~~ 195 (208)
T 2f8a_A 177 FLVGPDGVPLRRYSRRFQT 195 (208)
T ss_dssp EEECTTSCEEEEECTTSCG
T ss_pred EEEcCCCcEEEEeCCCCCH
Confidence 9999999999999766544
No 91
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.84 E-value=2.1e-20 Score=173.32 Aligned_cols=141 Identities=13% Similarity=0.260 Sum_probs=121.2
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh--hhHHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH--FSHLA 434 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~--~~~~~ 434 (547)
+|..+|+|++.+ .+| +.+++++++||++||+|| ++||++|+.+++.|++++++|++.+++|++|+.|.. +..++
T Consensus 36 ~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~ 111 (186)
T 1jfu_A 36 APLKLPDLAFED-ADG--KPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKT 111 (186)
T ss_dssp SCCBCCCCEEEC-TTS--CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHH
T ss_pred CCCcCCCcEeEc-CCC--CEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHH
Confidence 899999999999 889 699999999999999999 999999999999999999999988999999999864 66788
Q ss_pred HhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+++ ++ .||++.|.+.++.+.|++.... ..+|++||||++|+|++.+.+..+. +.+++++.|+++.
T Consensus 112 ~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~~~--~~~~l~~~l~~ll 179 (186)
T 1jfu_A 112 FLKEA-------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAAT 179 (186)
T ss_dssp HHHHT-------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHHHH
T ss_pred HHHHc-------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecCCcc--CHHHHHHHHHHHh
Confidence 88876 77 5999999999999999986321 2479999999999999999776532 3467777777654
No 92
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.84 E-value=1.2e-20 Score=168.77 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=111.4
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
++|+|.+. .+| +.+++++++||++||+|| ++|||+|+.++|.|.+++++|++.++++++|+.|..+..++|.+++
T Consensus 4 pa~~~~~~--~~G--~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~ 78 (151)
T 3raz_A 4 SADELAGW--KDN--TPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT 78 (151)
T ss_dssp ---CEEET--TTC--CEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS
T ss_pred Ccchhhcc--cCC--CEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc
Confidence 44555543 468 699999999999999999 9999999999999999999998889999999999999999999886
Q ss_pred ccCCCCCCcceeeecCCC---hHHHHHhC--CcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 440 RNKGGLGDMAIPILSDKS---MSIARSYG--VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~---~~~~~~~~--v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
+++||++.|.+ .++++.|+ +. .+|++||||++|+|++.+.|.. +.+++.+.|+++..
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 79 -------PVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGEV----NEKSLTDAVKLAHS 140 (151)
T ss_dssp -------CCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSCC----CHHHHHHHHHHHHT
T ss_pred -------CCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCCC----CHHHHHHHHHHHHH
Confidence 89999998763 67889999 65 5899999999999999997665 35666677776664
No 93
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2.5e-20 Score=189.08 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=132.7
Q ss_pred ccCCCCCCee-----eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC---
Q psy224 356 ALEKPAPEFE-----GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--- 427 (547)
Q Consensus 356 ~~g~~~p~~~-----l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--- 427 (547)
.+|.++|+|+ +.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 52 ~vG~~aPdF~~~~~wL~d-~dG--~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~ 127 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNT-PGN--KPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA 127 (352)
T ss_dssp CCCCBCCCCCSCCEEESS-GGG--CCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG
T ss_pred CCCCcCCCccccccccCC-CCC--CEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc
Confidence 3899999999 888 788 699999999999999999 9999999999999999999999989999999985
Q ss_pred ---ChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy224 428 ---SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDET 504 (547)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~i 504 (547)
+++..++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|++.+.+.. +.+++
T Consensus 128 ~~d~~~~~~~~~~~~-------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~~----~~~~l 190 (352)
T 2hyx_A 128 FEKVPGNVAKGAANL-------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGEG----DYNVT 190 (352)
T ss_dssp GGGCHHHHHHHHHHH-------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESBC----CHHHH
T ss_pred ccCCHHHHHHHHHHc-------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCCC----CHHHH
Confidence 466777888776 899999999999999999997 5899999999999999997765 35666
Q ss_pred HHHHHhhHhhhhcCccccCCccCC--CcccccCcc
Q psy224 505 LRLVQAFQFVAEHGEVCPAGWKPG--SKTMKADPS 537 (547)
Q Consensus 505 l~~l~~l~~~~~~~~~~~~~w~~~--~~~~~~~~~ 537 (547)
.+.|+++-.....+...|...... ++.+.+..+
T Consensus 191 ~~~I~~lL~e~~~~~~lpap~~~~~~~~~~~~~~s 225 (352)
T 2hyx_A 191 ETLVRQLLNDAKPGVKLPQPSSTTTPDLTPRAALT 225 (352)
T ss_dssp HHHHHHHHHHHSTTCCCCSCGGGTSCCCCCCSCSC
T ss_pred HHHHHHHHhhccCCCCCCCCccccccccCccccCC
Confidence 666666654444556666665443 444443333
No 94
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.83 E-value=2.6e-20 Score=165.33 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=116.3
Q ss_pred ccCCCCCCeeeccccCCceeeEecc--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHH-hhCCcEEEEEeCCC-hhh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEF-KKINTQVIACSTDS-HFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~--~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~-~~~~~~vi~is~d~-~~~ 431 (547)
.+|+++|+|++.+ .+| +.++++ +++||++||+|| ++|||+|..++|.|.+++++| +++++++++|+.|. .+.
T Consensus 6 ~~g~~~p~~~l~~-~~g--~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~ 81 (148)
T 3fkf_A 6 TVGKSAPYFSLPN-EKG--EKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREA 81 (148)
T ss_dssp CTTSBCCCCCEEB-TTS--CEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHH
T ss_pred cCCCcCCCeEeeC-CCC--CEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHH
Confidence 4899999999999 888 699999 999999999999 999999999999999999999 88899999999985 456
Q ss_pred HHHHhhccccCCCCCCcceeeecCC---ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~---~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+++.+++ +++||++.|. +..+.+.|++. .+|+++|||++|++++.+. +.+++.+.|
T Consensus 82 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~~l 141 (148)
T 3fkf_A 82 WETAIKKD-------TLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------QGEALTGKL 141 (148)
T ss_dssp HHHHHHHT-------TCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHHHH
T ss_pred HHHHHHHc-------CCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------CHHHHHHHH
Confidence 77777765 8999999998 67999999998 5899999999999999884 455666666
Q ss_pred Hhh
Q psy224 509 QAF 511 (547)
Q Consensus 509 ~~l 511 (547)
+++
T Consensus 142 ~~l 144 (148)
T 3fkf_A 142 KEL 144 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 95
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=178.58 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=106.3
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
....+|+|++++ .+ | +.++|++|+||++||+|| ++|||+|+ ++|.|++++++|+++|++|++|++|
T Consensus 31 ~~~~~pdF~l~d-~~~G--~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~ 105 (215)
T 2i3y_A 31 EKGTIYDYEAIA-LNKN--EYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPG 105 (215)
T ss_dssp CCCCGGGCEEEB-SSSS--CEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred ccCCcCCcEeee-CCCC--CEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCC
Confidence 456799999999 88 8 699999999999999999 99999999 9999999999999999999999975
Q ss_pred ChhhHHHHhh------ccccCCCCCCcceeeecCCC--hH----HHHHhC--------Cccc-----------CCCccee
Q psy224 428 SHFSHLAWCN------IPRNKGGLGDMAIPILSDKS--MS----IARSYG--------VLNE-----------ETGIPYR 476 (547)
Q Consensus 428 ~~~~~~~~~~------~~~~~~~~~~~~fp~l~D~~--~~----~~~~~~--------v~~~-----------~~g~~~p 476 (547)
+.+++++|++ ++ +++||++.|.+ +. +...+. +... ..-...|
T Consensus 106 ~~~~i~~f~~~~~~~~~~-------~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~np 178 (215)
T 2i3y_A 106 DNKEILPGLKYVRPGGGF-------VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNF 178 (215)
T ss_dssp CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTT
T ss_pred CHHHHHHHHHhccchhcc-------CccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCc
Confidence 2456677877 44 89999998643 22 222111 1100 0001137
Q ss_pred EEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 477 ~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++||||++|+|++.+.+.. +.+++.+.|+++-
T Consensus 179 ttfLID~~G~vv~~~~g~~----~~~~l~~~I~~ll 210 (215)
T 2i3y_A 179 EKFLVGPDGIPVMRWSHRA----TVSSVKTDILAYL 210 (215)
T ss_dssp CEEEECTTSCEEEEECTTS----CHHHHHHHHHHHG
T ss_pred eEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence 9999999999999996544 3456666666654
No 96
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=175.08 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------- 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------- 428 (547)
.+|+++|+|++.+ .+| +++++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|.
T Consensus 24 ~~g~~~p~f~l~~-~~G--~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~ 99 (185)
T 2gs3_A 24 RCARSMHEFSAKD-IDG--HMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG 99 (185)
T ss_dssp GGCCCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCS
T ss_pred cCCCCcCCceeEc-CCC--CEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCC
Confidence 3899999999999 899 699999999999999999 99999999999999999999999999999999863
Q ss_pred -hhhHHHHhhccccCCCCCCcceeeec--CCChH----HHHHh-------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 429 -HFSHLAWCNIPRNKGGLGDMAIPILS--DKSMS----IARSY-------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~----~~~~~-------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
++..++|.+++ +++||++. |.+++ +.+.+ ++... .....|++||||++|+|++.+.+.
T Consensus 100 ~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~ 171 (185)
T 2gs3_A 100 SNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPM 171 (185)
T ss_dssp CHHHHHHHHHHT-------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSS-SCCSSCCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHHc-------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCC-cccccceEEEECCCCCEEEeeCCC
Confidence 45677788765 89999997 44433 33333 32210 011258999999999999999765
Q ss_pred CC
Q psy224 495 LP 496 (547)
Q Consensus 495 ~~ 496 (547)
.+
T Consensus 172 ~~ 173 (185)
T 2gs3_A 172 EE 173 (185)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 97
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=99.83 E-value=7.8e-21 Score=176.58 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=106.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC--------
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-------- 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-------- 428 (547)
.+.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|+++|++|++|++|.
T Consensus 22 ~~~~~p~f~l~d-~~G--~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~ 97 (187)
T 3dwv_A 22 AASSIFDFEVLD-ADH--KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGN 97 (187)
T ss_dssp TCCSGGGSCCBB-TTS--CBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSB
T ss_pred CCCccCCeEEEc-CCC--CEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCC
Confidence 678999999999 899 699999999999999999 99999999999999999999999999999999873
Q ss_pred hhhHHHHhhccccCCCCCCcceeeec--CCChHHH-HHh--------CCcccCCCccee---EEEEEcCCCcEEEEEecC
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILS--DKSMSIA-RSY--------GVLNEETGIPYR---GLFIIDDKQNLRQITIND 494 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~~~-~~~--------~v~~~~~g~~~p---~~~lid~~G~v~~~~~~~ 494 (547)
.+..++|.++ ++ +++||++. |.++..+ ..| ++.. ...+| ++||||++|+|++.+.+.
T Consensus 98 ~~~~~~~~~~--~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~---~~~iP~~~~~~liD~~G~i~~~~~g~ 168 (187)
T 3dwv_A 98 EEEIKEFVCT--KF----KAEFPIMAKINVNGENAHPLYEYMKKTKPGILA---TKAIKWNFTSFLIDRDGVPVERFSPG 168 (187)
T ss_dssp TTHHHHSCCB--CC----CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBS---SSSCCSTTCEEEECTTSCEEEEECTT
T ss_pred HHHHHHHHHh--cc----CCCCceeeccccCCcchhHHHHHHHhhcCCccC---CCccccceeEEEECCCCCEEEEECCC
Confidence 4455555552 12 89999997 4443322 122 3221 01367 999999999999999655
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy224 495 LPVGRSVDETLRLVQAF 511 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~l 511 (547)
. +.+++.+.|+++
T Consensus 169 ~----~~~~l~~~i~~l 181 (187)
T 3dwv_A 169 A----SVKDIEEKLIPL 181 (187)
T ss_dssp C----CHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHH
Confidence 4 345566666554
No 98
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=174.69 Aligned_cols=139 Identities=11% Similarity=0.058 Sum_probs=110.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++|
T Consensus 22 ~~g~~~p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~ 97 (183)
T 2obi_A 22 RCARSMHEFSAKD-IDG--HMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG 97 (183)
T ss_dssp GGCCSGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred cccCcccceEEEc-CCC--CEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCC
Confidence 4899999999999 899 699999999999999999 9999999999999999999999999999999986
Q ss_pred ChhhHHHHhhccccCCCCCCcceeeec--CCChHH----HHHh-------CCcccCCCcceeEEEEEcCCCcEEEEEecC
Q psy224 428 SHFSHLAWCNIPRNKGGLGDMAIPILS--DKSMSI----ARSY-------GVLNEETGIPYRGLFIIDDKQNLRQITIND 494 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~fp~l~--D~~~~~----~~~~-------~v~~~~~g~~~p~~~lid~~G~v~~~~~~~ 494 (547)
+++..++|.+++ +++||++. |.+... .+.+ ++... .....|++||||++|+|++.+.+.
T Consensus 98 ~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~-~i~~~P~~~lid~~G~i~~~~~g~ 169 (183)
T 2obi_A 98 SNEEIKEFAAGY-------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN-AIKWNFTKFLIDKNGCVVKRYGPM 169 (183)
T ss_dssp CHHHHHHHHHTT-------TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSS-SCCSTTCEEEECTTSCEEEEECTT
T ss_pred CHHHHHHHHHHc-------CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccc-cccccceEEEECCCCCEEEEeCCC
Confidence 456777888765 89999997 655442 2222 33210 011258999999999999999664
Q ss_pred CCCCCCHHHHHHHHHh
Q psy224 495 LPVGRSVDETLRLVQA 510 (547)
Q Consensus 495 ~~~~~~~~~il~~l~~ 510 (547)
.+ .+++.+.|++
T Consensus 170 ~~----~~~l~~~i~~ 181 (183)
T 2obi_A 170 EE----PLVIEKDLPH 181 (183)
T ss_dssp SC----THHHHTTSGG
T ss_pred CC----HHHHHHHHHH
Confidence 42 3455555443
No 99
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=99.83 E-value=1.5e-20 Score=171.28 Aligned_cols=125 Identities=11% Similarity=0.185 Sum_probs=102.1
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++| +
T Consensus 8 ~g~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 83 (170)
T 2p5q_A 8 NPESVHDFTVKD-AKE--NDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGT 83 (170)
T ss_dssp --CCGGGCEEEB-TTS--CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred CCccccceEEEc-CCC--CEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCC
Confidence 899999999999 899 699999999999999999 9999999999999999999999999999999986 4
Q ss_pred hhhHHHHhh-ccccCCCCCCcceeee--cCCChHH----HH-----HhCCcccCCCccee---EEEEEcCCCcEEEEEec
Q psy224 429 HFSHLAWCN-IPRNKGGLGDMAIPIL--SDKSMSI----AR-----SYGVLNEETGIPYR---GLFIIDDKQNLRQITIN 493 (547)
Q Consensus 429 ~~~~~~~~~-~~~~~~~~~~~~fp~l--~D~~~~~----~~-----~~~v~~~~~g~~~p---~~~lid~~G~v~~~~~~ 493 (547)
.+..++|.+ ++ +++||++ .|.+... .+ .+++.. ..+| ++||||++|+|++.+.+
T Consensus 84 ~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~----~~~p~~~~~~lid~~G~i~~~~~g 152 (170)
T 2p5q_A 84 NDQITDFVCTRF-------KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG----DDIQWNFAKFLVNKDGQVVDRYYP 152 (170)
T ss_dssp HHHHHHHHHHHT-------CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC----SCCCSTTCEEEECTTSCEEEEECT
T ss_pred HHHHHHHHHHhc-------CCCceeEeeeccCCCchHHHHHHHHhcCCCccC----CcccccccEEEECCCCCEEEeeCC
Confidence 566777777 44 8899999 5665433 21 235421 1356 99999999999999976
Q ss_pred CCC
Q psy224 494 DLP 496 (547)
Q Consensus 494 ~~~ 496 (547)
..+
T Consensus 153 ~~~ 155 (170)
T 2p5q_A 153 TTS 155 (170)
T ss_dssp TSC
T ss_pred CCC
Confidence 554
No 100
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.83 E-value=3.9e-20 Score=163.45 Aligned_cols=131 Identities=14% Similarity=0.310 Sum_probs=114.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----Chhh
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~ 431 (547)
.+|..+|+|++.+ .+| +.+++++ +||++||+|| ++|||+|..+++.|.+++++|++.+++++.|+.| +.+.
T Consensus 10 ~~g~~~p~~~l~~-~~g--~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~ 84 (145)
T 3erw_A 10 KQPAVPAVFLMKT-IEG--EDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQV 84 (145)
T ss_dssp --CCSCCEEEEEC-TTS--CEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHH
T ss_pred cCCCcCCCceeec-CCC--CEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHH
Confidence 4899999999999 888 6999999 9999999999 9999999999999999999998789999999986 5667
Q ss_pred HHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.++|.+++ +++||++.|.+.++.+.|++. .+|+++|||++|+|+..+.+..+ .+++.+.|
T Consensus 85 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~l 144 (145)
T 3erw_A 85 VEDFIKAN-------KLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGPMT----AEQLKEWT 144 (145)
T ss_dssp HHHHHHHT-------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESCCC----HHHHHHHH
T ss_pred HHHHHHHc-------CCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCCcC----HHHHHHhh
Confidence 77777765 899999999999999999998 58999999999999999976653 45555443
No 101
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.83 E-value=6.6e-20 Score=166.02 Aligned_cols=140 Identities=17% Similarity=0.290 Sum_probs=118.0
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHH
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~ 434 (547)
.+|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|. ....++
T Consensus 9 ~~g~~~p~~~l~~-~~g--~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~ 84 (165)
T 3or5_A 9 ARPTPAPSFSGVT-VDG--KPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKN 84 (165)
T ss_dssp CCCCBCCCCEEEC-TTS--CEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHH
T ss_pred cCCCCCCCceeeC-CCC--CEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence 4899999999999 889 699999999999999999 99999999999999999999999899999999986 667788
Q ss_pred HhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 435 WCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|.+++ +++||++.|.+ ++.+.|+...+.....+|++||||++|+|+..+.+.. +.+++.+.|+++
T Consensus 85 ~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~ 149 (165)
T 3or5_A 85 YMKTQ-------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR----SKADFDRIVKMA 149 (165)
T ss_dssp HHHHH-------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCC----CHHHHHHHHHHH
T ss_pred HHHHc-------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence 88876 89999999865 8889995332211225899999999999999996655 345566665554
No 102
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=99.83 E-value=8.1e-21 Score=176.91 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=110.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
.++++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++++++|++|++| +
T Consensus 24 ~~~~~p~f~l~~-~~G--~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~ 99 (190)
T 2vup_A 24 AASSIFDFEVLD-ADH--KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGN 99 (190)
T ss_dssp CCCSGGGSCCBB-TTS--SBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSC
T ss_pred CCCcccCeEEEc-CCC--CEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCC
Confidence 788999999999 899 699999999999999999 9999999999999999999999999999999998 5
Q ss_pred hhhHHHHh-hccccCCCCCCcceeeec--CCChHH----HH-----HhCCcccCCCccee------EEEEEcCCCcEEEE
Q psy224 429 HFSHLAWC-NIPRNKGGLGDMAIPILS--DKSMSI----AR-----SYGVLNEETGIPYR------GLFIIDDKQNLRQI 490 (547)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~~~~fp~l~--D~~~~~----~~-----~~~v~~~~~g~~~p------~~~lid~~G~v~~~ 490 (547)
++..++|. +++ +++||++. |.+... .+ .|++. ..| ++||||++|+|++.
T Consensus 100 ~~~~~~~~~~~~-------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 100 EEEIKEFVCTKF-------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL------KTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp HHHHHHHHHHHH-------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG------GCCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhc-------CCCeEEEeecccCcccccHHHHHHHhhcCCcC------CCccccccceEEEECCCCcEEEE
Confidence 66778888 666 88999997 444332 22 24654 356 99999999999999
Q ss_pred EecCCCCCCCHHHHHHHHHhh
Q psy224 491 TINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 491 ~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+..+ .+++.+.|+++
T Consensus 167 ~~g~~~----~~~l~~~i~~l 183 (190)
T 2vup_A 167 FSPGAS----VKDIEKKLIPL 183 (190)
T ss_dssp ECTTCC----HHHHHHHHHHH
T ss_pred ECCCCC----HHHHHHHHHHH
Confidence 966543 45565655554
No 103
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.5e-21 Score=173.57 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=93.7
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------C
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--------S 428 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--------~ 428 (547)
.+..+|+|++++ .+| +.+++++++||++||+|| ++|||+|+ ++|.|++++++|++++++|++|++| +
T Consensus 8 ~~~~~~~f~l~d-~~G--~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~ 82 (171)
T 3cmi_A 8 HMSEFYKLAPVD-KKG--QPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGS 82 (171)
T ss_dssp --CGGGGCCCBB-TTS--CBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------
T ss_pred chhheeeeEEEc-CCC--CEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCC
Confidence 456789999999 899 699999999999999999 99999999 9999999999999999999999985 3
Q ss_pred hhhHHHHh-hccccCCCCCCcceeeecCCC--hH-HH--------HHhCCcccCCCccee------EEEEEcCCCcEEEE
Q psy224 429 HFSHLAWC-NIPRNKGGLGDMAIPILSDKS--MS-IA--------RSYGVLNEETGIPYR------GLFIIDDKQNLRQI 490 (547)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~~~~fp~l~D~~--~~-~~--------~~~~v~~~~~g~~~p------~~~lid~~G~v~~~ 490 (547)
++..++|. +++ +++||++.|.+ .. .. +.|++. ..| ++||||++|+|++.
T Consensus 83 ~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~------~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 83 DEEIAQFCQLNY-------GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML------GLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS------SCCSCCSTTCEEEECSSSCEEEE
T ss_pred HHHHHHHHHhcc-------CCCceEEeeccCCCccchHHHHHHHhccCCcC------CCCcccccceEEEECCCCCEEEE
Confidence 44555666 544 89999998754 22 21 235655 467 99999999999999
Q ss_pred EecCCCC
Q psy224 491 TINDLPV 497 (547)
Q Consensus 491 ~~~~~~~ 497 (547)
+.+..+.
T Consensus 150 ~~g~~~~ 156 (171)
T 3cmi_A 150 YSSLTKP 156 (171)
T ss_dssp ECTTSCG
T ss_pred eCCCCCH
Confidence 9765543
No 104
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=99.82 E-value=7.3e-20 Score=167.29 Aligned_cols=143 Identities=10% Similarity=0.048 Sum_probs=114.4
Q ss_pred cCCCCC-CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhh--CCcEEEEEeCC---Ch
Q psy224 357 LEKPAP-EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKK--INTQVIACSTD---SH 429 (547)
Q Consensus 357 ~g~~~p-~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~--~~~~vi~is~d---~~ 429 (547)
+|+++| +|++++ .+| +++++++++||++||+|| ++||| +|+.+++.|++++++|++ .++++++||.| ++
T Consensus 3 ~G~~~P~~f~l~d-~~G--~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~ 78 (170)
T 3me7_A 3 LGTYVPGDITLVD-SYG--NEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTL 78 (170)
T ss_dssp TTCBCCTTCEEEE-TTC--CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCH
T ss_pred CCCcCCCCeEEEc-CCc--CEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCH
Confidence 799999 999999 899 699999999999999999 99998 599999999999999975 56999999987 45
Q ss_pred hhHHHHhhccccCCCCCCcce---eee--cC--CChHHHHHhCCcccC--C-CcceeEEEEEcCCCcEEEEEecCCCCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAI---PIL--SD--KSMSIARSYGVLNEE--T-GIPYRGLFIIDDKQNLRQITINDLPVGR 499 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~f---p~l--~D--~~~~~~~~~~v~~~~--~-g~~~p~~~lid~~G~v~~~~~~~~~~~~ 499 (547)
+.+++|.+++ ++++ +++ .| ...+++++||+.... . ....|++||||++|+|+..+.+...
T Consensus 79 ~~~~~~~~~~-------~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~--- 148 (170)
T 3me7_A 79 EDIKRFQKEY-------GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNY--- 148 (170)
T ss_dssp HHHHHHHHHT-------TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSC---
T ss_pred HHHHHHHHHc-------CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCC---
Confidence 6677887765 5444 343 23 337888998865311 0 1135889999999999999866543
Q ss_pred CHHHHHHHHHhhHh
Q psy224 500 SVDETLRLVQAFQF 513 (547)
Q Consensus 500 ~~~~il~~l~~l~~ 513 (547)
+.+++++.|+++..
T Consensus 149 ~~~~i~~~l~~~~~ 162 (170)
T 3me7_A 149 NYLEFVNALRLARG 162 (170)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhc
Confidence 57899988887763
No 105
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=173.52 Aligned_cols=139 Identities=10% Similarity=0.071 Sum_probs=102.6
Q ss_pred cCCCCCCeeeccccC-CceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 357 LEKPAPEFEGQAVVN-GQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~-G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
....+|+|++++ .+ | +.+++++++||++||+|| ++|||+| .++|.|++++++|+++|++|++|++|
T Consensus 13 ~~~~~pdF~l~d-~~~G--~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~ 87 (207)
T 2r37_A 13 ISGTIYEYGALT-IDGE--EYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPG 87 (207)
T ss_dssp --CCGGGCEEEB-TTSS--CEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCS
T ss_pred ccCccCCeEeee-CCCC--CEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCC
Confidence 455789999999 88 8 699999999999999999 9999999 79999999999999999999999965
Q ss_pred ChhhHHHHhh------ccccCCCCCCcceeeecCCC--hH----HHHHh----C----Cccc-----------CCCccee
Q psy224 428 SHFSHLAWCN------IPRNKGGLGDMAIPILSDKS--MS----IARSY----G----VLNE-----------ETGIPYR 476 (547)
Q Consensus 428 ~~~~~~~~~~------~~~~~~~~~~~~fp~l~D~~--~~----~~~~~----~----v~~~-----------~~g~~~p 476 (547)
+.+.+++|.+ ++ +++||++.|.+ +. +...+ . +... ..-...|
T Consensus 88 ~~~~i~~f~~~~~~~~~~-------~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ 160 (207)
T 2r37_A 88 ENSEILPTLKYVRPGGGF-------VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF 160 (207)
T ss_dssp CHHHHHHHHHHTSSCTTC-------CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred CHHHHHHHHHhcchhhcc-------CccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence 2456777877 44 89999997643 22 22211 1 1100 0001137
Q ss_pred EEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 477 ~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++||||++|+|++.+.+... .+++.+.|+++
T Consensus 161 ttflID~~G~i~~~~~g~~~----~~~l~~~I~~l 191 (207)
T 2r37_A 161 EKFLVGPDGIPIMRWHHRTT----VSNVKMDILSY 191 (207)
T ss_dssp CEEEECTTSCEEEEECTTSC----HHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence 99999999999999965543 34444444443
No 106
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.82 E-value=3.3e-20 Score=166.22 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=118.8
Q ss_pred hccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC---CChhh
Q psy224 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST---DSHFS 431 (547)
Q Consensus 355 ~~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~---d~~~~ 431 (547)
..+|+++|+|++.+ .+| +.+++++++ |++||+|| ++||++|..+++.|.+++++| ++++++|+. ++.+.
T Consensus 5 l~~g~~~p~f~l~~-~~g--~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~ 76 (154)
T 3ia1_A 5 VKPGEPLPDFLLLD-PKG--QPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREV 76 (154)
T ss_dssp CCSBEECCCCCEEC-TTS--CEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHH
T ss_pred CCCCCcCCceEEEC-CCC--CEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHH
Confidence 34899999999999 888 699999999 99999999 999999999999999999999 899999999 66777
Q ss_pred HHHHhhccccCCCCCCcceeeecC---CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 432 HLAWCNIPRNKGGLGDMAIPILSD---KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp~l~D---~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.++|.+++ +++||++.| .+.++++.|++. .+|++||||++|+|+..+.+.. +.+++.+.|
T Consensus 77 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l 139 (154)
T 3ia1_A 77 VLEYMKTY-------PRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGRA----GREALLDAL 139 (154)
T ss_dssp HHHHHTTC-------TTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESBC----CHHHHHHHH
T ss_pred HHHHHHHc-------CCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCCC----CHHHHHHHH
Confidence 77888766 899999998 679999999988 5899999999999999997654 467788888
Q ss_pred HhhHh
Q psy224 509 QAFQF 513 (547)
Q Consensus 509 ~~l~~ 513 (547)
+++..
T Consensus 140 ~~~~~ 144 (154)
T 3ia1_A 140 LLAGA 144 (154)
T ss_dssp HHTTC
T ss_pred HhccC
Confidence 77663
No 107
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=163.39 Aligned_cols=137 Identities=12% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhh----CCcEEEEEeCCC----hhhH
Q psy224 362 PEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKK----INTQVIACSTDS----HFSH 432 (547)
Q Consensus 362 p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~----~~~~vi~is~d~----~~~~ 432 (547)
|+|++.+ .+| +.+++++++||++||+|| ++|||+ |+.+++.|++++++|++ .++++++|+.|+ ++..
T Consensus 7 p~f~l~~-~~G--~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~ 82 (171)
T 2rli_A 7 GDFHLLD-HRG--RARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAM 82 (171)
T ss_dssp SCCEEEE-TTS--CEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHH
T ss_pred CCeEEEe-CCC--CEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHH
Confidence 8999999 889 699999999999999999 999997 99999999999999975 589999999984 5677
Q ss_pred HHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCC-----C----cceeEEEEEcCCCcEEEEEecCCCCCCC
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEET-----G----IPYRGLFIIDDKQNLRQITINDLPVGRS 500 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~-----g----~~~p~~~lid~~G~v~~~~~~~~~~~~~ 500 (547)
++|.+++ +++|+++.|.. .++++.|++..... + ...|++||||++|+|++.+.+.. +
T Consensus 83 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~ 151 (171)
T 2rli_A 83 ARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----S 151 (171)
T ss_dssp HHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----C
T ss_pred HHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----C
Confidence 7888766 88999998743 57899999873110 0 01248999999999999997654 4
Q ss_pred HHHHHHHHHhhHh
Q psy224 501 VDETLRLVQAFQF 513 (547)
Q Consensus 501 ~~~il~~l~~l~~ 513 (547)
.+++.+.|+++-.
T Consensus 152 ~~~l~~~l~~ll~ 164 (171)
T 2rli_A 152 AEQISDSVRRHMA 164 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777776653
No 108
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=99.82 E-value=2.2e-19 Score=164.09 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=109.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHhhC--CcEEEEEeCCC----h
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-VCPTEIIAFSDRAEEFKKI--NTQVIACSTDS----H 429 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~----~ 429 (547)
+|.++|+|+|.| .+| +++++++++||++||+|| ++||| +|+.+++.|.++++++++. ++++++||+|+ +
T Consensus 8 ~~~~~PdF~L~d-~~G--~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp 83 (170)
T 4hde_A 8 LNWDLETFQFTN-QDG--KPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKP 83 (170)
T ss_dssp CCBCCCCCEEEC-TTS--CEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred CCCcCCCcEEEC-CCC--CEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccH
Confidence 788999999999 999 699999999999999999 99998 7999999999999999865 48999999875 4
Q ss_pred hhHHHHhhccccCCCCCCcceeeecCCCh-H----HHHHhCCcccCC--C--cceeEEEEEcCCCcEEEEEecCCCCCCC
Q psy224 430 FSHLAWCNIPRNKGGLGDMAIPILSDKSM-S----IARSYGVLNEET--G--IPYRGLFIIDDKQNLRQITINDLPVGRS 500 (547)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~fp~l~D~~~-~----~~~~~~v~~~~~--g--~~~p~~~lid~~G~v~~~~~~~~~~~~~ 500 (547)
+.+++|.+++ .....+|.++.+.+. . ....|+...... + .-.|++||||++|+|+..+.+... ..
T Consensus 84 ~~l~~y~~~~----~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~--~~ 157 (170)
T 4hde_A 84 ENLKAFIQKF----TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISN--TP 157 (170)
T ss_dssp HHHHHHHTTT----CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSS--CC
T ss_pred HHHHHHHHHc----CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCC--CC
Confidence 5667777654 222456777776542 2 223455443221 1 113789999999999999865332 24
Q ss_pred HHHHHHHHHhh
Q psy224 501 VDETLRLVQAF 511 (547)
Q Consensus 501 ~~~il~~l~~l 511 (547)
.+++++.|+.|
T Consensus 158 ~~~l~~~ik~L 168 (170)
T 4hde_A 158 YEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68888888765
No 109
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=99.82 E-value=4e-20 Score=167.85 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=115.5
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-------- 427 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-------- 427 (547)
.+|..+|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+ +++|++|+.|
T Consensus 12 ~~g~~~p~~~l~~-~~g--~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~ 85 (165)
T 3ha9_A 12 EVLEREASFSLTT-IDG--EVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKAL 85 (165)
T ss_dssp HHHHHHHCCCEEB-TTS--CEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHH
T ss_pred cccCcCCCCEeec-CCC--CEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccc
Confidence 4899999999999 889 699999999999999999 9999999999999999999998 8999999997
Q ss_pred -----------ChhhHHHHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 428 -----------SHFSHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 428 -----------~~~~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+.+..++|.+++ ++ +||++.| +.++.+.|++. .+|+++|||++|+|++ .+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d-~~~~~~~~~v~------~~P~~~lid~~G~i~~--~g~~ 149 (165)
T 3ha9_A 86 GLNKPGYPPPDTPEMFRKFIANY-------GDPSWIMVMD-DGSLVEKFNVR------SIDYIVIMDKSSNVLY--AGTT 149 (165)
T ss_dssp TCCSTTSCCCCCHHHHHHHHHHH-------SCTTSEEEEC-CSHHHHHTTCC------SSSEEEEEETTCCEEE--EEES
T ss_pred ccccccCCCCCCHHHHHHHHHHc-------CCCCeeEEeC-hHHHHHHhCCC------CceEEEEEcCCCcEEE--eCCC
Confidence 567778888876 88 9999999 99999999998 5899999999999999 3444
Q ss_pred CCCCCHHHHHHHHHhhH
Q psy224 496 PVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l~ 512 (547)
+ +.+++.+.|+++.
T Consensus 150 ~---~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 150 P---SLGELESVIKSVQ 163 (165)
T ss_dssp C---CHHHHHHHHHHC-
T ss_pred C---CHHHHHHHHHHHh
Confidence 2 3566777766653
No 110
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.81 E-value=9.1e-20 Score=161.65 Aligned_cols=134 Identities=14% Similarity=0.238 Sum_probs=116.5
Q ss_pred cCCCCCCeee--ccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC------C
Q psy224 357 LEKPAPEFEG--QAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD------S 428 (547)
Q Consensus 357 ~g~~~p~~~l--~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d------~ 428 (547)
+|+++|+|++ .+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++ +++++|+.| +
T Consensus 3 ~g~~~P~f~~~~~~-~~g--~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~ 77 (148)
T 2b5x_A 3 LRQPMPELTGEKAW-LNG--EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLD 77 (148)
T ss_dssp TTCBCCCCCCCSEE-ESC--CCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSS
T ss_pred CCCCCCCCcccccc-ccC--cccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccC
Confidence 7999999999 56 788 589999999999999999 999999999999999999999876 999999987 4
Q ss_pred hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+..++|.+++ +++||++.|.+.++++.|++. .+|+++|+|++|+++..+.+.. +.+++.+.|
T Consensus 78 ~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l 140 (148)
T 2b5x_A 78 PGKIKETAAEH-------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKRV 140 (148)
T ss_dssp HHHHHHHHHHT-------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHHHHHHH
T ss_pred HHHHHHHHHHc-------CCCcceEECCchhHHHHhCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHH
Confidence 56777787766 899999999999999999997 5899999999999999997654 345666666
Q ss_pred HhhH
Q psy224 509 QAFQ 512 (547)
Q Consensus 509 ~~l~ 512 (547)
+++-
T Consensus 141 ~~~l 144 (148)
T 2b5x_A 141 NRVL 144 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 111
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.81 E-value=2.8e-19 Score=155.94 Aligned_cols=130 Identities=25% Similarity=0.396 Sum_probs=111.2
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe------CCChhhHH
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS------TDSHFSHL 433 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is------~d~~~~~~ 433 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.++++++ ..++.+++|. .++....+
T Consensus 1 ~~p~f~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~ 75 (138)
T 4evm_A 1 EVADFELMG-VDG--KTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADFK 75 (138)
T ss_dssp CCCCCEEEB-TTS--CEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHHH
T ss_pred CCCcceeEC-CCC--CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHHH
Confidence 479999999 888 699999999999999999 999999999999999999984 4579999993 34456667
Q ss_pred HHhhccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 434 AWCNIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|.+++ ++ +||++.|.+.++.+.|++. ..|+++|+|++|++++.+.+.. +.+++.+.|+++
T Consensus 76 ~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l 137 (138)
T 4evm_A 76 NWYKGL-------DYKNLPVLVDPSGKLLETYGVR------SYPTQAFIDKEGKLVKTHPGFM----EKDAILQTLKEL 137 (138)
T ss_dssp HHHTTC-------CCTTCCEEECTTCHHHHHTTCC------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHC
T ss_pred HHHhhc-------CCCCeeEEECcchHHHHHcCcc------cCCeEEEECCCCcEEEeecCCC----cHHHHHHHHHhh
Confidence 777665 67 9999999999999999997 5899999999999999997654 356777777654
No 112
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.80 E-value=2.6e-19 Score=156.35 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=113.7
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHHhhc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAWCNI 438 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~~~ 438 (547)
++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|++++++++ ++++++|+.+. .+..++|.++
T Consensus 3 ~~p~~~l~~-~~g--~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~ 76 (136)
T 1lu4_A 3 ERLQFTATT-LSG--APFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSK 76 (136)
T ss_dssp GGGCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCeEeec-CCC--CeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHH
Confidence 578999999 888 699999999999999999 9999999999999999999997 89999999986 7788888887
Q ss_pred cccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEe---cCCCCCCCHHHHHHHHHhh
Q psy224 439 PRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI---NDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 439 ~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~---~~~~~~~~~~~il~~l~~l 511 (547)
+ +++||++.|.+.++++.|++. ..|+++|+|++|+++ .+. |.. +.+++.+.|+++
T Consensus 77 ~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~lid~~G~i~-~~~~~~g~~----~~~~l~~~l~~l 134 (136)
T 1lu4_A 77 Y-------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTST-FVNNPTAAM----SQDELSGRVAAL 134 (136)
T ss_dssp H-------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEE-EECCSSSCC----CHHHHHHHHHHC
T ss_pred c-------CCCceEEECCchhHHHhcCCC------CCCEEEEECCCCcEE-EEEcCCCcc----CHHHHHHHHHHH
Confidence 6 889999999999999999987 589999999999999 775 333 467777777754
No 113
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=99.80 E-value=6.3e-20 Score=167.45 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=117.6
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhhC---CcEEEEEeCCC---
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV-CPTEIIAFSDRAEEFKKI---NTQVIACSTDS--- 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vi~is~d~--- 428 (547)
+.|+++|+|++.+ .+| .+++++++||++||+|| ++|||+ |+.++|.|++++++|+++ ++++++|+.|+
T Consensus 11 ~~G~~~p~f~l~~-~~g---~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d 85 (172)
T 2k6v_A 11 LLNPKPVDFALEG-PQG---PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD 85 (172)
T ss_dssp EEEEEECCCEEEC-SSS---EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTC
T ss_pred ccCCCCCCeEEEc-CCC---CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCC
Confidence 3788899999999 777 79999999999999999 999997 999999999999999875 79999999874
Q ss_pred -hhhHHHHhhccccCCCCCCcceeeecCCC---hHHHHHhCCcccCC---------CcceeEEEEEcCCCcEEEEEecCC
Q psy224 429 -HFSHLAWCNIPRNKGGLGDMAIPILSDKS---MSIARSYGVLNEET---------GIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~~fp~l~D~~---~~~~~~~~v~~~~~---------g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++..++|.+++ +++||++.|.+ .++++.|++..... ....|++|||| +|+|++.+.+..
T Consensus 86 ~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~ 157 (172)
T 2k6v_A 86 PPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDK 157 (172)
T ss_dssp CHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHH
T ss_pred CHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCC
Confidence 56778888876 89999999987 68999999853211 12469999999 999999996554
Q ss_pred CCCCCHHHHHHHHHhh
Q psy224 496 PVGRSVDETLRLVQAF 511 (547)
Q Consensus 496 ~~~~~~~~il~~l~~l 511 (547)
..+.+++++.|+++
T Consensus 158 --~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 158 --AEATDRVVADLQAL 171 (172)
T ss_dssp --HTCHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHh
Confidence 22567888877754
No 114
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.80 E-value=3.2e-19 Score=159.29 Aligned_cols=135 Identities=14% Similarity=0.241 Sum_probs=116.3
Q ss_pred cCCCCC-CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCCh-hhHHH
Q psy224 357 LEKPAP-EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSH-FSHLA 434 (547)
Q Consensus 357 ~g~~~p-~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~ 434 (547)
+|+++| +|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+++++++++|+.|.. +..++
T Consensus 5 ~G~~~p~~f~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~ 80 (152)
T 2lja_A 5 SGNPSAASFSYPD-ING--KTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN 80 (152)
T ss_dssp TTCCCSSSCEEEE-TTT--EEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHH
T ss_pred cCCCCCcccEeec-CCC--CEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHH
Confidence 899999 999999 889 699999999999999999 999999999999999999999988999999999864 56677
Q ss_pred HhhccccCCCCCCcce-eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 435 WCNIPRNKGGLGDMAI-PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~f-p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.++. ++++ +++.|.+.++.+.|++. .+|+++|||++|++++.+.+.. +.+++.+.|+.+.
T Consensus 81 ~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~~ 142 (152)
T 2lja_A 81 MVTKD-------QLKGIQLHMGTDRTFMDAYLIN------GIPRFILLDRDGKIISANMTRP----SDPKTAEKFNELL 142 (152)
T ss_dssp HHHHH-------TCCSEEEECSSCTHHHHHTTCC------SSCCEEEECTTSCEEESSCCCT----TCHHHHHHHHHHH
T ss_pred HHHhc-------CCCCceeecCcchhHHHHcCcC------CCCEEEEECCCCeEEEccCCCC----CHHHHHHHHHHHh
Confidence 77765 5564 67888889999999997 5899999999999999875433 3456667776655
No 115
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.2e-21 Score=173.18 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=116.5
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHH-HHHHHh-hCCcEEEEEeCCCh-hhHH
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSD-RAEEFK-KINTQVIACSTDSH-FSHL 433 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~-~~~~~~-~~~~~vi~is~d~~-~~~~ 433 (547)
+|+++|+|++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|.+ ++++++ +.++++++|+.|.. +..+
T Consensus 9 ~g~~~p~f~l~~-~~g--~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 84 (159)
T 2ls5_A 9 IGEMAPDFTITL-TDG--KQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84 (159)
Confidence 899999999999 888 699999999999999999 9999999999999998 999998 78999999998864 4456
Q ss_pred HHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 434 AWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|.+++ +++||++.|.+.++++.|++.. ..+|+++|||++|+|++.+.+. .. .+++++++.|++..
T Consensus 85 ~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~----~~~P~~~lid~~G~i~~~~~g~-~~-~~l~~~l~~l~~~~ 150 (159)
T 2ls5_A 85 AFAKST-------GVTYPLGLDPGADIFAKYALRD----AGITRNVLIDREGKIVKLTRLY-NE-EEFASLVQQINEML 150 (159)
Confidence 666654 8999999999999999999642 1479999999999999988552 22 24566666655544
No 116
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.79 E-value=5.9e-19 Score=153.90 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=113.9
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC-hhhHHHHh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS-HFSHLAWC 436 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~-~~~~~~~~ 436 (547)
|.++|+|++.+ .+| +.+++++++||++||+|| ++|||+|..+++.|.+++++|+ +++++.|+.|. .+..++|.
T Consensus 2 ~~~~p~~~~~~-~~g--~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 75 (136)
T 1zzo_A 2 VPAQLQFSAKT-LDG--HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFV 75 (136)
T ss_dssp CCGGGCCEEEB-TTS--CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHH
T ss_pred CCCCCCccccc-CCC--CEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHH
Confidence 56789999999 888 699999999999999999 9999999999999999999987 89999999875 67778888
Q ss_pred hccccCCCCCCc-ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 437 NIPRNKGGLGDM-AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 437 ~~~~~~~~~~~~-~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++ ++ +||++.|.+.++.+.|++. .+|+++|+|++|+++ .+.+.. +.+++.+.|+++
T Consensus 76 ~~~-------~~~~~~~~~d~~~~~~~~~~i~------~~P~~~~id~~g~i~-~~~g~~----~~~~l~~~l~~~ 133 (136)
T 1zzo_A 76 NKY-------PVKTFTQLADTDGSVWANFGVT------QQPAYAFVDPHGNVD-VVRGRM----SQDELTRRVTAL 133 (136)
T ss_dssp HHT-------TCTTSEEEECTTCHHHHHTTCC------SSSEEEEECTTCCEE-EEESCC----CHHHHHHHHHHH
T ss_pred HHc-------CCCceEEEEcCCcHHHHHcCCC------CCceEEEECCCCCEE-EEecCC----CHHHHHHHHHHH
Confidence 776 78 9999999999999999987 589999999999999 776654 356666666654
No 117
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=99.77 E-value=1e-18 Score=159.02 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=105.4
Q ss_pred ccCCCCCCeeecccc--CCceeeEeccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-Chhh
Q psy224 356 ALEKPAPEFEGQAVV--NGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-SHFS 431 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~--~G~~~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~~~~ 431 (547)
.+|+++|+|++.+ . +| +.++++++ +||++||+|| ++|||+|+.++|.|++++++ ++++++|+.| ..+.
T Consensus 23 ~~G~~~P~f~l~~-~~~~g--~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~ 94 (168)
T 2b1k_A 23 LIGKPVPKFRLES-LDNPG--QFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQK 94 (168)
T ss_dssp TTTSBCCCCEEEE-SSSTT--CEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHH
T ss_pred ccCCcCCCeEeec-ccCCC--cEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHH
Confidence 4899999999999 7 77 68999885 8999999999 99999999999999988765 8999999975 5677
Q ss_pred HHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 432 HLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.++|.+++ +++|| ++.|.+.++++.|++. .+|++||||++|++++.+.|..+
T Consensus 95 ~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~ 147 (168)
T 2b1k_A 95 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 147 (168)
T ss_dssp HHHHHHHH-------CCCCSEEEEETTCHHHHHHTCC------SSSEEEEECTTSBEEEEEESCCC
T ss_pred HHHHHHHc-------CCCCceeeECcchHHHHHcCcc------ccCEEEEECCCCeEEEEEeCCCC
Confidence 78888876 88998 5788899999999998 58999999999999999977654
No 118
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=99.77 E-value=7.9e-19 Score=155.44 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=103.7
Q ss_pred cCCCCCC-eeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPE-FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~-~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~-~~~~~ 433 (547)
+++.+|+ |++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..+
T Consensus 3 ~~~~~P~~f~l~~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 78 (144)
T 1i5g_A 3 LKKFFPYSTNVLK-GAA--ADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 78 (144)
T ss_dssp TTTSCSSCSEEEE-TTE--EEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred hhhhCCCceEEEc-CCC--CEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence 6789999 99999 888 699999999999999999 99999999999999999999985 689999999984 66777
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. -..||++. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 79 DYYAKMP------WLALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHTTCS------SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHhCC------ccccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEecc
Confidence 7777641 24677665 5668999999987 589999999 999999876
No 119
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=99.76 E-value=1.9e-18 Score=153.38 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=101.9
Q ss_pred cCCCCCC-eeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPE-FEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~-~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~-~~~~~ 433 (547)
+|+.+|+ |++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..+
T Consensus 4 ~~~~~P~~f~l~~-~~g---~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~ 78 (146)
T 1o8x_A 4 LDKYLPGIEKLRR-GDG---EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFA 78 (146)
T ss_dssp GGGTSTTCCEEEE-TTE---EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH
T ss_pred hHhhCCCceEEEc-CCC---CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHH
Confidence 6888999 99998 766 79999999999999999 99999999999999999999984 789999999984 56667
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. ..+||++. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 79 GYFAKMP------WLAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHTTCS------SEECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHCC------ceeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEec
Confidence 7776541 24677665 6678999999987 589999999 999999876
No 120
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.75 E-value=1.2e-18 Score=157.70 Aligned_cols=127 Identities=13% Similarity=0.265 Sum_probs=107.3
Q ss_pred eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC------hhhHHHHhhc
Q psy224 365 EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS------HFSHLAWCNI 438 (547)
Q Consensus 365 ~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~------~~~~~~~~~~ 438 (547)
++.+ .+| +.+++++++||++||+|| ++|||+|+.++|.|.+++++|+..+++|++|+.|. .+...+|.++
T Consensus 22 ~l~~-~~g--~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~ 97 (164)
T 2h30_A 22 TMKT-ADN--RPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAG 97 (164)
T ss_dssp TCEE-TTS--SBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTT
T ss_pred ccCC-CCC--CEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHh
Confidence 6677 788 589999999999999999 99999999999999999999998999999999753 3445555554
Q ss_pred cccCCCCCCcc-eeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 439 PRNKGGLGDMA-IPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 439 ~~~~~~~~~~~-fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+ +++ |++..|.+.++++.|++. .+|+++|||++|+++..+.|.. +.+++.+.|+++.
T Consensus 98 ~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~~~ 155 (164)
T 2h30_A 98 L-------NYPKLPVVTDNGGTIAQNLNIS------VYPSWALIGKDGDVQRIVKGSI----NEAQALALIRNPN 155 (164)
T ss_dssp S-------CCTTSCEEECTTCHHHHHTTCC------SSSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTT
T ss_pred C-------CCCcceEEEcCchHHHHHcCCC------ccceEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence 3 666 899999999999999997 5899999999999999997655 4567777777654
No 121
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.75 E-value=1.8e-18 Score=154.98 Aligned_cols=133 Identities=11% Similarity=0.205 Sum_probs=110.0
Q ss_pred ccCCCCCCeeeccccCC------ceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC-C
Q psy224 356 ALEKPAPEFEGQAVVNG------QFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD-S 428 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G------~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d-~ 428 (547)
.+|+.+|+|++.+ .+| +++.+++++++||++||+|| ++|||+|..+++.|++++++ .++++++|+.+ .
T Consensus 9 ~~g~~~p~f~l~~-~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~~~ 83 (156)
T 1kng_A 9 LIGRPAPQTALPP-LEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDA 83 (156)
T ss_dssp ---CBCCCCCBCC-CTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCC
T ss_pred HhCCCCCCceeee-ccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEECCCC
Confidence 4899999999999 777 22489999999999999999 99999999999999998876 46999999975 5
Q ss_pred hhhHHHHhhccccCCCCCCccee-eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy224 429 HFSHLAWCNIPRNKGGLGDMAIP-ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRL 507 (547)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~fp-~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~ 507 (547)
.+..++|.+++ +++|| ++.|.+.++++.|++. .+|++||||++|+++..+.|..+ .+++.+.
T Consensus 84 ~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~g~~~----~~~l~~~ 146 (156)
T 1kng_A 84 ADNARRFLGRY-------GNPFGRVGVDANGRASIEWGVY------GVPETFVVGREGTIVYKLVGPIT----PDNLRSV 146 (156)
T ss_dssp HHHHHHHHHHH-------CCCCSEEEEETTSHHHHHTTCC------SSCEEEEECTTSBEEEEEESCCC----HHHHHHT
T ss_pred HHHHHHHHHHc-------CCCCceeeeCchhHHHHhcCcC------ccCeEEEEcCCCCEEEEEeCCCC----HHHHHHH
Confidence 67778888876 89999 8889999999999998 58999999999999999876653 3444444
Q ss_pred HHh
Q psy224 508 VQA 510 (547)
Q Consensus 508 l~~ 510 (547)
|++
T Consensus 147 l~~ 149 (156)
T 1kng_A 147 LLP 149 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=99.73 E-value=8.3e-18 Score=148.65 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=100.3
Q ss_pred cCCCCCCe-eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCC-hhhHH
Q psy224 357 LEKPAPEF-EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDS-HFSHL 433 (547)
Q Consensus 357 ~g~~~p~~-~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~-~~~~~ 433 (547)
+|+.+|+| ++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|.+++++|+ +.++++++|+.|. .+..+
T Consensus 4 ~g~~~p~~~~l~~-~~g---~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~ 78 (144)
T 1o73_A 4 LAKYLPGATNLLS-KSG---EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH 78 (144)
T ss_dssp GGGTSCTTCCBBC-TTS---CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH
T ss_pred hhhhCccceEeec-CCC---cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH
Confidence 78899997 9998 777 79999999999999999 9999999999999999999998 4789999999985 45666
Q ss_pred HHhhccccCCCCCCcceeeec-CCChHHHHHhCCcccCCCcceeEEEEEc-CCCcEEEEE
Q psy224 434 AWCNIPRNKGGLGDMAIPILS-DKSMSIARSYGVLNEETGIPYRGLFIID-DKQNLRQIT 491 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~fp~l~-D~~~~~~~~~~v~~~~~g~~~p~~~lid-~~G~v~~~~ 491 (547)
+|.+++. ...+|+.. |.+.++++.|++. .+|+++||| ++|+|++.+
T Consensus 79 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 79 DYYGKMP------WLALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHTTCS------SEECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHhCC------ceEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecc
Confidence 7766541 24566554 5568899999997 589999999 899999766
No 123
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=99.71 E-value=3.3e-18 Score=155.40 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=101.2
Q ss_pred ccCCCCCCe-eeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCCh-hhH
Q psy224 356 ALEKPAPEF-EGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSH-FSH 432 (547)
Q Consensus 356 ~~g~~~p~~-~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~-~~~ 432 (547)
.+|+.+|+| ++.+ .+| .+++++++||++||+|| ++|||+|+.++|.|.+++++|++ ++++|++|+.|.. +..
T Consensus 23 ~vG~~~P~f~~l~~-~~g---~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~ 97 (165)
T 3s9f_A 23 GVAKHLGEALKLRK-QAD---TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDF 97 (165)
T ss_dssp HHHHHHHHTSCEEE-TTE---EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred hhcccCCcceeeec-CCC---cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHH
Confidence 388999999 8988 777 89999999999999999 99999999999999999999986 7899999999864 566
Q ss_pred HHHhhccccCCCCCCcceeeecCCC-hHHHHHhCCcccCCCcceeEEEEEcCC-CcEEEEE
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKS-MSIARSYGVLNEETGIPYRGLFIIDDK-QNLRQIT 491 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~-~~~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~ 491 (547)
++|.++.. -..+|+..+.. .++++.|++. .+|+++|||++ |+|+...
T Consensus 98 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 98 NAYYAKMP------WLSIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHHHTTCS------SEECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESC
T ss_pred HHHHHhCC------CcccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEecc
Confidence 77776541 24566655433 8999999997 58999999998 9999876
No 124
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=99.52 E-value=1.7e-18 Score=152.73 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=97.8
Q ss_pred CCCCeeeccccCCceeeEeccC-CCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCC-hhhHHH
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQ-YKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDS-HFSHLA 434 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~-~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~-~~~~~~ 434 (547)
.+|+|++.+ .+| +.+++++ ++|| ++||+|| ++|||+|+.++|.|++++++|++ .++++++|+.|. .+..++
T Consensus 3 ~~p~~~l~~-~~g--~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~ 78 (143)
T 2lus_A 3 FIQGIKLVK-KNR--CEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQ 78 (143)
Confidence 579999999 888 6999999 8999 9999999 99999999999999999999953 589999999984 455566
Q ss_pred HhhccccCCCCCCccee---eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 435 WCNIPRNKGGLGDMAIP---ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~fp---~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
|.+++ +++|+ +..|.+.++++.|++. .+|+++|||++|+|++.+
T Consensus 79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 79 YMMES-------HGDWLAIPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMN 125 (143)
Confidence 66554 66655 4456668899999987 589999999999999987
No 125
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.37 E-value=1.2e-12 Score=112.68 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=87.8
Q ss_pred CCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhcc
Q psy224 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIP 439 (547)
Q Consensus 360 ~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 439 (547)
.+++++..+ .+| ........+||++||+|| ++|||+|....|.+.+++++|+ .++.++.|+.+
T Consensus 5 ~~~~l~~~~-~~~--~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------ 67 (126)
T 2l57_A 5 GIKQINFQS-INV--VENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------ 67 (126)
T ss_dssp CSSCTTTTC-CSE--ESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT------------
T ss_pred ccCCCCccc-cch--hHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC------------
Confidence 455666666 565 233345557899999999 9999999999999999999887 57999999865
Q ss_pred ccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 440 ~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|.+.++++.|++. .+|+++++|++|+++..+.|.. +.+++.+.|++..
T Consensus 68 --------------~d~~~~~~~~~~v~------~~Pt~~~~~~~G~~~~~~~G~~----~~~~l~~~l~~~~ 116 (126)
T 2l57_A 68 --------------EEKNIDLAYKYDAN------IVPTTVFLDKEGNKFYVHQGLM----RKNNIETILNSLG 116 (126)
T ss_dssp --------------SSHHHHHHHHTTCC------SSSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHHC
T ss_pred --------------CCchHHHHHHcCCc------ceeEEEEECCCCCEEEEecCCC----CHHHHHHHHHHHh
Confidence 13346788899987 5899999999999999887654 4567777777654
No 126
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=99.37 E-value=1.7e-12 Score=118.25 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=112.6
Q ss_pred ccCCCCCC--eeecc--c--------cCCceeeEeccCC--CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHH-hhCCc
Q psy224 356 ALEKPAPE--FEGQA--V--------VNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPT-EIIAFSDRAEEF-KKINT 419 (547)
Q Consensus 356 ~~g~~~p~--~~l~~--~--------~~G~~~~~~l~~~--~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~-~~~~~ 419 (547)
.+|+++|. +++.- + .-|.++++++++. +||.+||+++|+.++|.|.. ++|.+.+.++++ +++|+
T Consensus 27 ~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGv 106 (199)
T 4h86_A 27 LVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEV 106 (199)
T ss_dssp TTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCC
T ss_pred HhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCC
Confidence 48999994 43321 0 0144577888876 79999999999999999987 599999999876 77887
Q ss_pred -EEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCC---cceeEEEEEcCCCcEEEEEecCC
Q psy224 420 -QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG---IPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 420 -~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g---~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
+|++||+|+++...+|.+..... ....+++++|.+.++++.+|+..+..+ ++.|..+||| ||+|.+.++.+.
T Consensus 107 d~I~ciSVND~FVm~AW~k~~~~~---~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~ 182 (199)
T 4h86_A 107 DQVIVVTVDNPFANQAWAKSLGVK---DTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETN 182 (199)
T ss_dssp CEEEEEESSCHHHHHHHHHHTTCC---CCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSS
T ss_pred cEEEEEEcCCHHHHHHHHHHhccc---ccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCC
Confidence 79999999999999999875211 145799999999999999998754332 3457899998 999999997543
Q ss_pred C---C-CCCHHHHHHH
Q psy224 496 P---V-GRSVDETLRL 507 (547)
Q Consensus 496 ~---~-~~~~~~il~~ 507 (547)
+ . ..+.+.+|+.
T Consensus 183 pg~~~~vS~ae~vL~~ 198 (199)
T 4h86_A 183 PGTDVTVSSVESVLAH 198 (199)
T ss_dssp TTTCCSTTSHHHHHTT
T ss_pred CCCCCcccCHHHHHhc
Confidence 2 1 1245666543
No 127
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=99.33 E-value=7.8e-12 Score=122.40 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhccCcccccccCCCCeEEecCccCcccCCCCCceEEecc-cCCCCHHHHHHHHHHHHH
Q psy224 219 LQNWFKEFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHIT-IQNLGVTKLFVALCEGII 297 (547)
Q Consensus 219 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~-~~~~~~~~l~ra~~Egia 297 (547)
.++|+.+.+ ..+ .+.+++++... . .|+..++|++....+.++++. ..+ +++|++|+++|+++
T Consensus 134 ~le~~a~~l-g~~-~~el~~la~~~----------~----~p~~~~~~c~vfa~s~v~~l~~~g~-~~~di~~av~e~Va 196 (270)
T 1hux_A 134 FLDVMANIL-EVK-VSDLAELGAKS----------T----KRVAISSTCTVFAESEVISQLSKGT-DKIDIIAGIHRSVA 196 (270)
T ss_dssp HHHHHHHHH-TCC-TTTHHHHHTTC----------C----SCCCCCCCSHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCC-HHHHHHHHhhC----------C----CCCCcccccchhHhHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 459999864 222 33445553210 1 466667776533335566665 444 89999999999999
Q ss_pred HHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhh
Q psy224 298 NNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAM 350 (547)
Q Consensus 298 ~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~ 350 (547)
+.+...++ ..+ .++|+++||+ ++|+.|+|+++++++.|+.+++.++.
T Consensus 197 ~~i~~~~~-----~~~~~~~i~~~GG~-a~n~~~~~~~~~~lg~~v~~p~~~~~ 244 (270)
T 1hux_A 197 SRVIGLAN-----RVGIVKDVVMTGGV-AQNYGVRGALEEGLGVEIKTSPLAQY 244 (270)
T ss_dssp HHHHHHHH-----TTCCCSSEEEESGG-GGCHHHHHHHHHHHCSCEECCGGGGG
T ss_pred HHHHHHHh-----cCCCCCeEEEeCcc-ccCHHHHHHHHHHHCCCeEeCCCcch
Confidence 99854443 345 4789999997 99999999999999999999887775
No 128
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.30 E-value=5e-13 Score=116.55 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=87.9
Q ss_pred cCCCCCCee-eccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhH
Q psy224 357 LEKPAPEFE-GQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSH 432 (547)
Q Consensus 357 ~g~~~p~~~-l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~ 432 (547)
.+..+|+|. +.+ .++ ....+++++||++||+|| ++||++|....+.+ .++.++++ ++.++.|+.+...
T Consensus 6 ~~~~~~~f~~~~~-~~~--~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~-- 77 (134)
T 2fwh_A 6 QTQTHLNFTQIKT-VDE--LNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND-- 77 (134)
T ss_dssp ----CCCCEECCS-HHH--HHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC--
T ss_pred ccccCCCcEEecC-HHH--HHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCc--
Confidence 677788887 544 444 356677788999999999 99999999999988 88888775 5999999886421
Q ss_pred HHHhhccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHh
Q psy224 433 LAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 433 ~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~ 510 (547)
|.+.++++.|++. .+|+++++|++|+++ ..+.|.. +.+++.+.|+.
T Consensus 78 ----------------------~~~~~l~~~~~v~------~~Pt~~~~d~~G~~v~~~~~~G~~----~~~~l~~~l~~ 125 (134)
T 2fwh_A 78 ----------------------AQDVALLKHLNVL------GLPTILFFDGQGQEHPQARVTGFM----DAETFSAHLRD 125 (134)
T ss_dssp ----------------------HHHHHHHHHTTCC------SSSEEEEECTTSCBCGGGCBCSCC----CHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHcCCC------CCCEEEEECCCCCEeeeeeeeecc----CHHHHHHHHHh
Confidence 2346788899987 589999999999998 5665554 46788888887
Q ss_pred hH
Q psy224 511 FQ 512 (547)
Q Consensus 511 l~ 512 (547)
++
T Consensus 126 ~~ 127 (134)
T 2fwh_A 126 RQ 127 (134)
T ss_dssp C-
T ss_pred cC
Confidence 76
No 129
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.28 E-value=2.2e-12 Score=115.40 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=86.3
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+.+++++.+||++||+||.++|||+|..+.|.+ .++.+.+. .++.++.|..+... +++++
T Consensus 38 ~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~----------------~~~~~ 100 (154)
T 2ju5_A 38 EALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN----------------HQPEE 100 (154)
T ss_dssp HHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC----------------CCCHH
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc----------------CCChh
Confidence 467788888999999999789999999999999 66655443 46888888776532 23444
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+ .|.+.++++.|++. .+|+++|+|++|+++..+ |.. ..+.+++++.|+++-
T Consensus 101 ~-~~~~~~l~~~~~v~------~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 101 Q-RQKNQELKAQYKVT------GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL 151 (154)
T ss_dssp H-HHHHHHHHHHTTCC------SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred h-HhhHHHHHHHcCCC------CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence 3 46678999999998 589999999999999988 665 235677888777653
No 130
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.18 E-value=1.4e-10 Score=101.54 Aligned_cols=96 Identities=13% Similarity=0.265 Sum_probs=78.4
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeec
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILS 454 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~ 454 (547)
...+++++++|++||+|| ++||++|....|.+.+++++|++ .+.++.|..|.
T Consensus 42 ~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------- 93 (141)
T 3hxs_A 42 HSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK-------------------------- 93 (141)
T ss_dssp CCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT--------------------------
T ss_pred chhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC--------------------------
Confidence 578888889999999999 99999999999999999999875 47887776543
Q ss_pred CCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 455 DKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 455 D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.++++.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+++
T Consensus 94 --~~~~~~~~~v~------~~Pt~~~~~~~g~~~-~~~G~~----~~~~l~~~l~~~ 137 (141)
T 3hxs_A 94 --EPELARDFGIQ------SIPTIWFVPMKGEPQ-VNMGAL----SKEQLKGYIDKV 137 (141)
T ss_dssp --CHHHHHHTTCC------SSSEEEEECSSSCCE-EEESCC----CHHHHHHHHHHT
T ss_pred --CHHHHHHcCCC------CcCEEEEEeCCCCEE-EEeCCC----CHHHHHHHHHHH
Confidence 45788899988 589999999999998 554544 456777776654
No 131
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.18 E-value=2.9e-12 Score=116.61 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=79.2
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+.++..+||++||+|| ++||++|+...+.+ .++.+.+++ ++.++.|+.|............. ......+..
T Consensus 39 ~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~---~~~~~~~~~ 113 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIME---NGTERTLRT 113 (172)
T ss_dssp HHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEE---TTEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhh---cchhhhhhh
Confidence 35556668999999999 99999999864333 455554543 79999999886433211111100 000223334
Q ss_pred ecCCChHH-HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 453 LSDKSMSI-ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 453 l~D~~~~~-~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.|....+ .+.|++. .+|+++|+|++|+++..+.|..+ +.+++++.|++.
T Consensus 114 ~~~~~~~~~~~~~~v~------~~Pt~~lid~~G~~~~~~~G~~~---~~~~l~~~l~~~ 164 (172)
T 3f9u_A 114 VGDKWSYLQRVKFGAN------AQPFYVLIDNEGNPLNKSYAYDE---DISKYINFLQTG 164 (172)
T ss_dssp HHHHHHHHHHHHHSCC------CSSEEEEECTTSCBSSCCBCSCC---CHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHcCCC------CcceEEEECCCCCEEeeccCCCC---CHHHHHHHHHHH
Confidence 44434444 5889998 58999999999999998876663 255666665543
No 132
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.15 E-value=1.7e-10 Score=99.91 Aligned_cols=101 Identities=11% Similarity=0.162 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFS--DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.+..+||++||+|| ++||++|....|.|. ++.+++++ ++.++.|+.+. .|.
T Consensus 24 ~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~ 76 (133)
T 3fk8_A 24 AGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN-------------------------FDR 76 (133)
T ss_dssp HHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT-------------------------TTS
T ss_pred HHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc-------------------------ccc
Confidence 33346899999999 999999999999999 99988864 68999988753 244
Q ss_pred ChHHHHHhCC---cccCCCcceeEEEEEcCCCcEEEEEecCC-CC--CCCHHHHHHHHHhhH
Q psy224 457 SMSIARSYGV---LNEETGIPYRGLFIIDDKQNLRQITINDL-PV--GRSVDETLRLVQAFQ 512 (547)
Q Consensus 457 ~~~~~~~~~v---~~~~~g~~~p~~~lid~~G~v~~~~~~~~-~~--~~~~~~il~~l~~l~ 512 (547)
+.++++.|++ . .+|+++++|++|+++..+.+.. .. ....+++.+.|+.+.
T Consensus 77 ~~~l~~~~~v~~~~------~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 77 NLELSQAYGDPIQD------GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp SHHHHHHTTCGGGG------CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred hHHHHHHhCCccCC------ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 6788899998 6 5899999999999999986632 21 235667777776653
No 133
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.14 E-value=1.5e-10 Score=99.68 Aligned_cols=106 Identities=16% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhh
Q psy224 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCN 437 (547)
Q Consensus 358 g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 437 (547)
...+|+++. .++ +.++....+||++||+|| ++||++|....|.+.++++++++ ++.++.|+.|
T Consensus 21 ~~~~~~~~~---~~~--~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d---------- 83 (128)
T 3ul3_B 21 FKKVPRLQQ---NGS--NIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLD---------- 83 (128)
T ss_dssp -----CCCC---CCC--SSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGG----------
T ss_pred hccCCcccc---CCc--cHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECC----------
Confidence 345666653 345 356777778999999999 99999999999999999999974 5888887643
Q ss_pred ccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 438 IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 438 ~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
.+.+++++|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+
T Consensus 84 ------------------~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~ 126 (128)
T 3ul3_B 84 ------------------KNESLARKFSVK------SLPTIILL-KNKTMLARKDHFV----SSNDLIALIK 126 (128)
T ss_dssp ------------------GCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHT
T ss_pred ------------------CCHHHHHHcCCC------CcCEEEEE-ECCEEEEEecCCC----CHHHHHHHHH
Confidence 235788899988 58999999 6999999886544 4567666664
No 134
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2.3e-10 Score=98.62 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=75.3
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+++++.+||++||+|| ++|||+|....|.+ .++.+.++ .++.++.|..+.
T Consensus 19 ~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~------------------------ 72 (130)
T 2kuc_A 19 ALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK------------------------ 72 (130)
T ss_dssp HHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS------------------------
T ss_pred HHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC------------------------
Confidence 45556667999999999 99999999999998 55554443 356666665543
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
|.+..+++.|++. .+|+++++|++|+++..+.|.. ..+++.+.|+++.
T Consensus 73 --~~~~~~~~~~~v~------~~Pt~~~~d~~G~~~~~~~G~~----~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 73 --GEGVELRKKYGVH------AYPTLLFINSSGEVVYRLVGAE----DAPELLKKVKLGV 120 (130)
T ss_dssp --TTHHHHHHHTTCC------SSCEEEEECTTSCEEEEEESCC----CHHHHHHHHHHHH
T ss_pred --cchHHHHHHcCCC------CCCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHH
Confidence 2356788999987 5899999999999999887655 3567777777654
No 135
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.05 E-value=6.9e-10 Score=92.11 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=69.7
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|++||+|| |+||++|....|.+.++.+++. ++.++.|..| .+.
T Consensus 15 l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d----------------------------~~~ 63 (105)
T 3zzx_A 15 LNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVD----------------------------ECE 63 (105)
T ss_dssp HHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCH
T ss_pred HHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEecc----------------------------cCH
Confidence 34456899999999 9999999999999999988775 4666655443 346
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|+|. .+||.+++ ++|+++..+.|. +.+++.+.+++
T Consensus 64 ~l~~~~~V~------~~PT~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k 103 (105)
T 3zzx_A 64 DIAQDNQIA------CMPTFLFM-KNGQKLDSLSGA-----NYDKLLELVEK 103 (105)
T ss_dssp HHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred HHHHHcCCC------eecEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence 788999998 58988777 799999999762 45677776654
No 136
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.04 E-value=9.8e-10 Score=91.81 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+.++|+++|+|| ++|||+|....|.+.+++++++ ++.++.|..+. .+.+
T Consensus 20 ~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~---------------------------~~~~ 69 (111)
T 2pu9_C 20 KAAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKT 69 (111)
T ss_dssp TTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHH
T ss_pred HhcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc---------------------------chHH
Confidence 3446899999999 9999999999999999998886 58888887762 2467
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|++. .+|+ ++++++|+++..+.|.. .+++.+.|+++
T Consensus 70 ~~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~l~~~ 109 (111)
T 2pu9_C 70 LAKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAA 109 (111)
T ss_dssp HHHHHCCS------BSSE-EEEESSSSEEEEEESSC-----HHHHHHHHHHH
T ss_pred HHHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHh
Confidence 88999988 5898 66779999999886542 45666666654
No 137
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.04 E-value=1.4e-09 Score=91.21 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++++++++ ++.++.|+.|. +.++++
T Consensus 16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 65 (112)
T 2voc_A 16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE----------------------------NQETAG 65 (112)
T ss_dssp SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CCSHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence 7899999999 99999999999999999999875 68998887653 235778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.+++..
T Consensus 66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~~ 104 (112)
T 2voc_A 66 KYGVM------SIPTLLVL-KDGEVVETSVGFK----PKEALQELVNKHL 104 (112)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTS
T ss_pred HcCCC------cccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHH
Confidence 89987 58999999 8999999887665 3567777766544
No 138
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.98 E-value=1.1e-09 Score=92.50 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=71.1
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|++||+|| ++||++|....|.+.+++++|++ +.++.|..|. +.
T Consensus 26 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~----------------------------~~ 74 (116)
T 3qfa_C 26 LDAAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD----------------------------CQ 74 (116)
T ss_dssp HHHHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT----------------------------TH
T ss_pred HHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CH
Confidence 34447899999999 99999999999999999988864 8888887642 45
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|++. .+|+++++ ++|+++..+.|. +.+++.+.|++
T Consensus 75 ~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~ 114 (116)
T 3qfa_C 75 DVASECEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE 114 (116)
T ss_dssp HHHHHTTCC------SSSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHH
T ss_pred HHHHHcCCc------cccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHH
Confidence 788899988 58998888 799999988654 34566666654
No 139
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.96 E-value=3e-09 Score=92.51 Aligned_cols=89 Identities=12% Similarity=0.259 Sum_probs=71.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++|++ ++.++.|.++. +.++++
T Consensus 37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 86 (136)
T 2l5l_A 37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK----------------------------EQELAG 86 (136)
T ss_dssp CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC----------------------------CHHHHH
Confidence 4689999999 99999999999999999998864 48888877642 357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++|++|+++ .+.|.. +.+++.+.|+++.
T Consensus 87 ~~~v~------~~Pt~~~~~~~G~~~-~~~G~~----~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 87 AFGIR------SIPSILFIPMEGKPE-MAQGAM----PKASFKKAIDEFL 125 (136)
T ss_dssp HTTCC------SSCEEEEECSSSCCE-EEESCC----CHHHHHHHHHHHH
T ss_pred HcCCC------CCCEEEEECCCCcEE-EEeCCC----CHHHHHHHHHHHh
Confidence 89987 589999999999998 454544 4567777777655
No 140
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.96 E-value=3.9e-09 Score=86.97 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.++++++ +.++.|+.|. +.++++
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~----------------------------~~~~~~ 67 (106)
T 3die_A 18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE----------------------------NPSTAA 67 (106)
T ss_dssp CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT----------------------------CHHHHH
T ss_pred cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc----------------------------CHHHHH
Confidence 7899999999 999999999999999999998753 8888887642 356778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.++++ +|+++..+.|.. +.+++.+.|++
T Consensus 68 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~ 104 (106)
T 3die_A 68 KYEVM------SIPTLIVFK-DGQPVDKVVGFQ----PKENLAEVLDK 104 (106)
T ss_dssp HTTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHT
T ss_pred hCCCc------ccCEEEEEe-CCeEEEEEeCCC----CHHHHHHHHHH
Confidence 89988 589999995 999999886654 45677776654
No 141
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.7e-09 Score=87.72 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.++++..++.++.|..+. +.++++
T Consensus 20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~ 70 (112)
T 3d6i_A 20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE----------------------------NSEISE 70 (112)
T ss_dssp TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc----------------------------CHHHHH
Confidence 4899999999 99999999999999999998765678888887753 246888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. .+++.+.|+++
T Consensus 71 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 107 (112)
T 3d6i_A 71 LFEIS------AVPYFIII-HKGTILKELSGAD-----PKEYVSLLEDC 107 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEECSCC-----HHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCEEEEEecCCC-----HHHHHHHHHHH
Confidence 89987 58998888 6999999886543 23455555544
No 142
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.96 E-value=2e-09 Score=95.05 Aligned_cols=112 Identities=7% Similarity=0.070 Sum_probs=84.3
Q ss_pred cCCCCCCeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHh
Q psy224 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWC 436 (547)
Q Consensus 357 ~g~~~p~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 436 (547)
.+..+++..+.+ ++++ .+.....++|++||+|| ++||++|....|.+.++++++.. ++.++.|..+
T Consensus 31 ~~~~~~~~~v~~-l~~~--~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~--------- 96 (148)
T 3p2a_A 31 CGHSLFDGEVIN-ATAE--TLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTE--------- 96 (148)
T ss_dssp TCCBTTCCCCEE-CCTT--THHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETT---------
T ss_pred cCCccccCCcee-cCHH--HHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECc---------
Confidence 455666776666 5552 44433347899999999 99999999999999999999864 4888887664
Q ss_pred hccccCCCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 437 NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 437 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+.++.+.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 97 -------------------~~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l 142 (148)
T 3p2a_A 97 -------------------AEPALSTRFRIR------SIPTIMLY-RNGKMIDMLNGAV----PKAPFDNWLDEQL 142 (148)
T ss_dssp -------------------TCHHHHHHTTCC------SSSEEEEE-ETTEEEEEESSCC----CHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHCCCC------ccCEEEEE-ECCeEEEEEeCCC----CHHHHHHHHHHHh
Confidence 245788899988 58998888 5999999886654 4566666666543
No 143
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.95 E-value=1.4e-09 Score=96.33 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++|+++ +.++.|..| .+.++++
T Consensus 22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d----------------------------~~~~l~~ 71 (149)
T 3gix_A 22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD----------------------------QTAVYTQ 71 (149)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETT----------------------------TCCHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECC----------------------------cCHHHHH
Confidence 5899999999 999999999999999999888643 777777653 2356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEE---------EEEecCCCCCCCHHHHHHHHHhhHhhhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLR---------QITINDLPVGRSVDETLRLVQAFQFVAE 516 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~---------~~~~~~~~~~~~~~~il~~l~~l~~~~~ 516 (547)
.|++. .+|+++ ++++|+++ ..+.|. ..+.+++.+.|+++-..++
T Consensus 72 ~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~---~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 72 YFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGS---FKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp HTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESC---CSSHHHHHHHHHHHHHHHH
T ss_pred HcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeee---cCCHHHHHHHHHHHHHHhh
Confidence 99987 589998 66799999 444441 1246777777777654343
No 144
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.94 E-value=7.5e-10 Score=99.95 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=62.3
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.+++++||++||+|| ++|||+|+.++|.|.+++++++ ++.++.|+.|.. .+..+++ .-
T Consensus 48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~---~~~~~~~-------~~--------- 105 (167)
T 1z6n_A 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA---EDDLRQR-------LA--------- 105 (167)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH---HHHTTTT-------TT---------
T ss_pred HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC---HHHHHHH-------HH---------
Confidence 467788999999999 9999999999999999998764 688888876532 2222221 10
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
.++. .+|+++++|++|+++..+ +..
T Consensus 106 ------~~v~------~iPt~i~~~~~G~~~~~~-g~~ 130 (167)
T 1z6n_A 106 ------LERI------AIPLVLVLDEEFNLLGRF-VER 130 (167)
T ss_dssp ------CSSC------CSSEEEEECTTCCEEEEE-ESS
T ss_pred ------cCCC------CcCeEEEECCCCCEEEEE-cCC
Confidence 1233 589999999999998877 443
No 145
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.94 E-value=7.8e-09 Score=86.52 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++++ .+.++.|+.+. +.++.+
T Consensus 24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 73 (115)
T 1thx_A 24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP----------------------------NPTTVK 73 (115)
T ss_dssp CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT----------------------------CHHHHH
T ss_pred CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998875 38888887653 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 74 ~~~v~------~~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~ 111 (115)
T 1thx_A 74 KYKVE------GVPALRLV-KGEQILDSTEGVI----SKDKLLSFLDTH 111 (115)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------ceeEEEEE-cCCEEEEEecCCC----CHHHHHHHHHHH
Confidence 99987 58999999 8999999886654 356676766654
No 146
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.94 E-value=6.2e-09 Score=86.04 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 67 (107)
T 1dby_A 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE----------------------------SPNVAS 67 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999998865 48888877643 357888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|++
T Consensus 68 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~ 104 (107)
T 1dby_A 68 EYGIR------SIPTIMVF-KGGKKCETIIGAVP----KATIVQTVEK 104 (107)
T ss_dssp HHTCC------SSCEEEEE-SSSSEEEEEESCCC----HHHHHHHHHH
T ss_pred HCCCC------cCCEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHH
Confidence 99987 58998777 79999998876553 4556666554
No 147
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.93 E-value=3.8e-09 Score=88.05 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++++ ++.++.|..| .+.++++
T Consensus 23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~----------------------------~~~~l~~ 71 (109)
T 3f3q_A 23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD----------------------------ELGDVAQ 71 (109)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT----------------------------TCHHHHH
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECC----------------------------CCHHHHH
Confidence 5899999999 9999999999999999999885 4777777653 2467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|++++++ +|+++..+.|.. .+++.+.|++
T Consensus 72 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~~-----~~~l~~~i~~ 107 (109)
T 3f3q_A 72 KNEVS------AMPTLLLFK-NGKEVAKVVGAN-----PAAIKQAIAA 107 (109)
T ss_dssp HTTCC------SSSEEEEEE-TTEEEEEEESSC-----HHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEE-CCEEEEEEeCCC-----HHHHHHHHHh
Confidence 99988 589999997 999999986652 3566665554
No 148
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.93 E-value=3.5e-09 Score=90.57 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++|||+|....|.|.++.++|+ ++.++.|+.|. +.+++
T Consensus 36 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~ 84 (124)
T 1xfl_A 36 ESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE----------------------------LKSVA 84 (124)
T ss_dssp HTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------SHHHH
T ss_pred hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHH
Confidence 36899999999 9999999999999999998885 68888877642 45788
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+++
T Consensus 85 ~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 122 (124)
T 1xfl_A 85 SDWAIQ------AMPTFMFL-KEGKILDKVVGA-----KKDELQSTIAKH 122 (124)
T ss_dssp HHTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HHcCCC------ccCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHh
Confidence 899988 58997766 899999988652 345666666543
No 149
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.93 E-value=5e-09 Score=88.80 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.|.+++++++. ++.++.|+.|. +.++++
T Consensus 30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 79 (119)
T 1w4v_A 30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD----------------------------HTDLAI 79 (119)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT----------------------------THHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998865 58888887643 356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 80 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 117 (119)
T 1w4v_A 80 EYEVS------AVPTVLAM-KNGDVVDKFVGIK----DEDQLEAFLKKL 117 (119)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence 99988 58999999 8999999886654 355666666543
No 150
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.92 E-value=4.7e-09 Score=87.67 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 71 (112)
T 1t00_A 22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE----------------------------NPGTAA 71 (112)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999998865 48888887643 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|..+ .+++.+.|+++
T Consensus 72 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~ 109 (112)
T 1t00_A 72 KYGVM------SIPTLNVY-QGGEVAKTIVGAKP----KAAIVRDLEDF 109 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHTHHH
T ss_pred hCCCC------cccEEEEE-eCCEEEEEEeCCCC----HHHHHHHHHHH
Confidence 99987 58987777 79999998876553 45666665543
No 151
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.92 E-value=3.5e-09 Score=87.27 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++|||+|....|.+.++.+++++ .+.++.|+.|. +.++++
T Consensus 16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 65 (105)
T 1nsw_A 16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE----------------------------NPETTS 65 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC----------------------------CHHHHH
Confidence 5789999999 99999999999999999988865 38888887543 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 66 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 102 (105)
T 1nsw_A 66 QFGIM------SIPTLILF-KGGRPVKQLIGYQ----PKEQLEAQLAD 102 (105)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTT
T ss_pred HcCCc------cccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHH
Confidence 89987 58999999 8999999887655 34555555543
No 152
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.91 E-value=4.2e-09 Score=89.78 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.++|+++|+|| ++|||+|....|.+.+++++++ ++.++.|..+. .+.++
T Consensus 34 ~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~---------------------------~~~~~ 83 (124)
T 1faa_A 34 AAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ---------------------------ENKTL 83 (124)
T ss_dssp HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS---------------------------TTHHH
T ss_pred hcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc---------------------------chHHH
Confidence 346899999999 9999999999999999998886 58888887652 14678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++|++. .+|+ ++++++|+++..+.|.. .+++.+.|+++
T Consensus 84 ~~~~~v~------~~Pt-~~~~~~G~~~~~~~G~~-----~~~l~~~i~~~ 122 (124)
T 1faa_A 84 AKELGIR------VVPT-FKILKENSVVGEVTGAK-----YDKLLEAIQAA 122 (124)
T ss_dssp HHHHCCS------SSSE-EEEEETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred HHHcCCC------eeeE-EEEEeCCcEEEEEcCCC-----HHHHHHHHHHh
Confidence 8899988 5898 55558999999886542 45666666654
No 153
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.91 E-value=7.3e-09 Score=85.73 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ .+.++.|..| .+.++++
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~----------------------------~~~~~~~ 69 (109)
T 3tco_A 20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVD----------------------------ENQKIAD 69 (109)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccc----------------------------cCHHHHH
Confidence 5899999999 99999999999999999998865 4777777653 3457788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 70 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 106 (109)
T 3tco_A 70 KYSVL------NIPTTLIF-VNGQLVDSLVGAV----DEDTLESTVNK 106 (109)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred hcCcc------cCCEEEEE-cCCcEEEeeeccC----CHHHHHHHHHH
Confidence 89988 58999999 8999999987655 35666666654
No 154
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.91 E-value=8.4e-09 Score=85.12 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++. ++.++.|+.+. +.++++
T Consensus 19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 68 (107)
T 2i4a_A 19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD----------------------------NPETPN 68 (107)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT----------------------------CCHHHH
T ss_pred CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999999875 68888887653 236788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 106 (107)
T 2i4a_A 69 AYQVR------SIPTLMLV-RDGKVIDKKVGAL----PKSQLKAWVESA 106 (107)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHT
T ss_pred hcCCC------ccCEEEEE-eCCEEEEEecCCC----CHHHHHHHHHhc
Confidence 89987 58999999 8999999886654 456677766643
No 155
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.91 E-value=6.6e-09 Score=86.04 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.++++. ++.++.|..+. +.++++
T Consensus 19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 68 (108)
T 2trx_A 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 68 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CTTHHH
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998865 47888776643 235778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 106 (108)
T 2trx_A 69 KYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN 106 (108)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCc------ccCEEEEE-eCCEEEEEEecCC----CHHHHHHHHHHh
Confidence 89987 58999999 7999999887655 345666666543
No 156
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.89 E-value=2.2e-09 Score=93.15 Aligned_cols=91 Identities=9% Similarity=0.109 Sum_probs=68.9
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.+++.+||++||+|| ++||++|....|.+.++.++| ++.++.|..+ .+
T Consensus 34 ~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~----------------------------~~ 81 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVD----------------------------IH 81 (133)
T ss_dssp HHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETT----------------------------TC
T ss_pred HHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEecc----------------------------ch
Confidence 355667899999999 999999999999998887665 4677666543 24
Q ss_pred hHHHHHhCCcccCCCcceeEEEEE-cCCCc--EEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 458 MSIARSYGVLNEETGIPYRGLFII-DDKQN--LRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~li-d~~G~--v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.++++.|++. .+|+++++ |++|+ ++..+.|. +.+++.+.|+++
T Consensus 82 ~~l~~~~~v~------~~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~ 127 (133)
T 3cxg_A 82 PKLNDQHNIK------ALPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKY 127 (133)
T ss_dssp HHHHHHTTCC------SSSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHH
T ss_pred HHHHHhcCCC------CCCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHH
Confidence 6788899987 58999998 45666 88888654 246777777654
No 157
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.87 E-value=1.1e-08 Score=83.78 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....+.+.++.+++++ +.++.|+.|. +.++.+
T Consensus 15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~----------------------------~~~~~~ 63 (104)
T 2e0q_A 15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE----------------------------NPDIAA 63 (104)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC----------------------------CHHHHH
Confidence 5789999999 99999999999999999988864 8888887642 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 64 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 101 (104)
T 2e0q_A 64 RYGVM------SLPTVIFF-KDGEPVDEIIGAV----PREEIEIRIKNL 101 (104)
T ss_dssp HTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred hCCcc------ccCEEEEE-ECCeEhhhccCCC----CHHHHHHHHHHH
Confidence 89987 58999999 8999999886654 345666666543
No 158
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.87 E-value=4.5e-09 Score=86.85 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.++|. ++.++.|..|. +.++++
T Consensus 17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~l~~ 65 (105)
T 4euy_A 17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD----------------------------MQEIAG 65 (105)
T ss_dssp CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC----------------------------C-----
T ss_pred cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC----------------------------CHHHHH
Confidence 5799999999 9999999999999999998884 68888877643 235667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|++++++ +|+++..+.|.. +.+++.+.|+++
T Consensus 66 ~~~v~------~~Pt~~~~~-~G~~~~~~~g~~----~~~~l~~~l~~~ 103 (105)
T 4euy_A 66 RYAVF------TGPTVLLFY-NGKEILRESRFI----SLENLERTIQLF 103 (105)
T ss_dssp ----C------CCCEEEEEE-TTEEEEEEESSC----CHHHHHHHHHTT
T ss_pred hcCCC------CCCEEEEEe-CCeEEEEEeCCc----CHHHHHHHHHHh
Confidence 88887 589999995 999999887655 456777776653
No 159
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.87 E-value=7.9e-09 Score=87.88 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++++.+++.++.|+.|. +.++++
T Consensus 32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~----------------------------~~~~~~ 82 (121)
T 2j23_A 32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE----------------------------QSQIAQ 82 (121)
T ss_dssp SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998887678888887653 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|. +.+++.+.|+++
T Consensus 83 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 119 (121)
T 2j23_A 83 EVGIR------AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH 119 (121)
T ss_dssp HHTCC------SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence 99987 58998888 599999988654 345666666543
No 160
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.87 E-value=1.1e-08 Score=85.28 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=69.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+|++||+|| ++|||+|....|.+.++.++|++ ++.++.|+.|. +.++.+.
T Consensus 24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 73 (112)
T 1ep7_A 24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA----------------------------VAAVAEA 73 (112)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------THHHHHH
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc----------------------------hHHHHHH
Confidence 899999999 99999999999999999998865 68888887642 4578889
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++
T Consensus 74 ~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 109 (112)
T 1ep7_A 74 AGIT------AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKH 109 (112)
T ss_dssp HTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred cCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence 9987 58986666 799999988654 245666666554
No 161
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.87 E-value=1.3e-08 Score=88.96 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=74.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++++ .+.++.|.++. +.++++
T Consensus 23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 72 (140)
T 3hz4_A 23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT----------------------------NPWTAE 72 (140)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc----------------------------CHhHHH
Confidence 4799999999 99999999999999999999975 48888877532 357788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhhh--cCccccCCccCCCc
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE--HGEVCPAGWKPGSK 530 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~--~~~~~~~~w~~~~~ 530 (547)
.|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+++-.... .....|.+|...-+
T Consensus 73 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 131 (140)
T 3hz4_A 73 KYGVQ------GTPTFKFF-CHGRPVWEQVGQIY----PSILKNAVRDMLQHGEECIRKSTPVGQDITGY 131 (140)
T ss_dssp HHTCC------EESEEEEE-ETTEEEEEEESSCC----HHHHHHHHHHHHHHHHHHHHTSBC--------
T ss_pred HCCCC------cCCEEEEE-eCCcEEEEEcCCCC----HHHHHHHHHHHhcccccCcccccccCccceee
Confidence 99988 58988888 79999988876653 4555555554432211 13456666654433
No 162
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=4.2e-09 Score=90.56 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.+++++ .+.++.|..| .+.++++
T Consensus 34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~l~~ 83 (130)
T 2dml_A 34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNAD----------------------------KHQSLGG 83 (130)
T ss_dssp CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETT----------------------------TCHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCC----------------------------CCHHHHH
Confidence 4789999999 99999999999999999998865 3777777643 3467889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|++++++++|+++..+.|.. +.+++++.+.+.
T Consensus 84 ~~~v~------~~Pt~~~~~~~~~~~~~~~G~~----~~~~l~~~l~~~ 122 (130)
T 2dml_A 84 QYGVQ------GFPTIKIFGANKNKPEDYQGGR----TGEAIVDAALSA 122 (130)
T ss_dssp HHTCC------SSSEEEEESSCTTSCEECCSCC----SHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEEeCCCCeEEEeecCC----CHHHHHHHHHHH
Confidence 99988 5899999999988666664433 456666665543
No 163
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.86 E-value=4.5e-09 Score=90.48 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++++++++ ++.++.|+.|.. .++++
T Consensus 39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~----------------------------~~l~~ 88 (128)
T 2o8v_B 39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP 88 (128)
T ss_dssp CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC----------------------------CTTSG
T ss_pred cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC----------------------------HHHHH
Confidence 5799999999 99999999999999999998865 488888877531 23456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 89 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 126 (128)
T 2o8v_B 89 KYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN 126 (128)
T ss_dssp GGTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------ccCEEEEE-eCCEEEEEEcCCC----CHHHHHHHHHHh
Confidence 78887 58999999 8999999887654 356666666643
No 164
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-08 Score=87.65 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|++||+|| ++||++|....|.+.++++++++ .++.++.|..+. +.+
T Consensus 24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~ 74 (133)
T 1x5d_A 24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV----------------------------NQV 74 (133)
T ss_dssp SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT----------------------------CCH
T ss_pred CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC----------------------------CHH
Confidence 4789999999 99999999999999999999973 457777776542 357
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.|++. .+|+++++++ |+++..+.|.. +.+++.+.|+++-
T Consensus 75 l~~~~~v~------~~Pt~~~~~~-g~~~~~~~G~~----~~~~l~~~l~~~~ 116 (133)
T 1x5d_A 75 LASRYGIR------GFPTIKIFQK-GESPVDYDGGR----TRSDIVSRALDLF 116 (133)
T ss_dssp HHHHHTCC------SSSEEEEEET-TEEEEEECSCC----SHHHHHHHHHHHH
T ss_pred HHHhCCCC------eeCeEEEEeC-CCceEEecCCC----CHHHHHHHHHHHh
Confidence 88999988 5899999986 88888886543 4567777666544
No 165
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.85 E-value=9.4e-09 Score=85.82 Aligned_cols=88 Identities=9% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.+++. ++.++.|..+ .+.++++
T Consensus 18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~----------------------------~~~~l~~ 66 (110)
T 2l6c_A 18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE----------------------------ARPELMK 66 (110)
T ss_dssp TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGG----------------------------GCHHHHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCc----------------------------CCHHHHH
Confidence 5789999999 9999999999999998887764 5666666542 2456888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.++...
T Consensus 67 ~~~v~------~~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 67 ELGFE------RVPTLVFI-RDGKVAKVFSGIM----NPRELQALYASIH 105 (110)
T ss_dssp HTTCC------SSCEEEEE-ESSSEEEEEESCC----CHHHHHHHHHTC-
T ss_pred HcCCc------ccCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHHh
Confidence 99988 58999999 8999999987655 4567777777654
No 166
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.85 E-value=1.4e-08 Score=90.56 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.|.+++++|+. ++.++.|+.|. +.++.+
T Consensus 63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 112 (155)
T 2ppt_A 63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA----------------------------HPAVAG 112 (155)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------STHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc----------------------------cHHHHH
Confidence 5789999999 99999999999999999999975 48888887752 246888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 113 ~~~i~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~ 150 (155)
T 2ppt_A 113 RHRIQ------GIPAFILF-HKGRELARAAGAR----PASELVGFVRGK 150 (155)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HcCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHHH
Confidence 99988 58999999 6999999887654 456676766654
No 167
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.84 E-value=1.3e-08 Score=86.43 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++|++ +.++.|+.|. +.++.+
T Consensus 33 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~----------------------------~~~~~~ 81 (122)
T 2vlu_A 33 AKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE----------------------------LKPIAE 81 (122)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 99999999999999999988864 8888887653 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|.. .+++.+.|+++
T Consensus 82 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~~ 118 (122)
T 2vlu_A 82 QFSVE------AMPTFLFM-KEGDVKDRVVGAI-----KEELTAKVGLH 118 (122)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCEEEEEEeCcC-----HHHHHHHHHHH
Confidence 89987 58987766 8999998886544 35565666544
No 168
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.84 E-value=6.6e-09 Score=88.02 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.|.++.+++ .++.++.|..+. +.++++
T Consensus 22 ~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~~~~ 70 (118)
T 2f51_A 22 APGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK----------------------------NGNAAD 70 (118)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC----------------------------CHHHHH
Confidence 4899999999 999999999999999999888 578898887653 246788
Q ss_pred HhCCcccCCCcceeEEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDD---KQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.|++. .+|+++++++ +|+++..+.|.. .+++.+.+++...
T Consensus 71 ~~~i~------~~Pt~~~~~~~~~~G~~~~~~~G~~-----~~~l~~~~~~~~~ 113 (118)
T 2f51_A 71 AYGVS------SIPALFFVKKEGNEIKTLDQFVGAD-----VSRIKADIEKFKH 113 (118)
T ss_dssp HTTCC------SSSEEEEEEEETTEEEEEEEEESCC-----HHHHHHHHHHHC-
T ss_pred hcCCC------CCCEEEEEeCCCCcceEEEeecCCC-----HHHHHHHHHHhhh
Confidence 99988 5899999975 499999986654 3556666665543
No 169
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.84 E-value=7.4e-09 Score=90.89 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++++. ++.++.|..|.. .++++
T Consensus 22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~~~~ 71 (142)
T 1qgv_A 22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV----------------------------PDFNK 71 (142)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC----------------------------CTTTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC----------------------------HHHHH
Confidence 4899999999 99999999999999999999864 488888877631 12456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC------CCCCHHHHHHHHHhhHhhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP------VGRSVDETLRLVQAFQFVA 515 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~------~~~~~~~il~~l~~l~~~~ 515 (547)
.|++. .+|+++++ ++|+++....+... ...+.+++++.|+++...+
T Consensus 72 ~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 72 MYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp SSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred HcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 78887 58999999 48998876544311 1114677777777765443
No 170
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.83 E-value=1.9e-08 Score=83.54 Aligned_cols=88 Identities=8% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.+++++ ++.++.|..+. +.++++
T Consensus 21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 70 (111)
T 3gnj_A 21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE----------------------------EKTLFQ 70 (111)
T ss_dssp SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc----------------------------ChhHHH
Confidence 4789999999 99999999999999999998864 48888877642 357888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 71 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 108 (111)
T 3gnj_A 71 RFSLK------GVPQILYF-KDGEYKGKMAGDV----EDDEVEQMIADV 108 (111)
T ss_dssp HTTCC------SSCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHH
T ss_pred hcCCC------cCCEEEEE-ECCEEEEEEeccC----CHHHHHHHHHHH
Confidence 99988 58999999 6999998886654 456666666543
No 171
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-08 Score=85.28 Aligned_cols=87 Identities=6% Similarity=0.097 Sum_probs=69.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
+.+||+|| ++||++|....|.+.++++++++.++.++.|.++. +.++++.|
T Consensus 23 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~~~~~ 73 (126)
T 1x5e_A 23 GDWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE----------------------------QPGLSGRF 73 (126)
T ss_dssp SEEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT----------------------------CHHHHHHT
T ss_pred CCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC----------------------------CHHHHHHc
Confidence 34899999 99999999999999999999987678888887542 34688899
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++. .+|+++++ ++|++ ..+.|.. +.+++.+.|+++.
T Consensus 74 ~v~------~~Pt~~~~-~~G~~-~~~~G~~----~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 74 IIN------ALPTIYHC-KDGEF-RRYQGPR----TKKDFINFISDKE 109 (126)
T ss_dssp TCC------SSSEEEEE-ETTEE-EECCSCC----CHHHHHHHHHTCG
T ss_pred CCc------ccCEEEEE-eCCeE-EEeecCC----CHHHHHHHHHHHh
Confidence 987 58999999 79995 4453433 5678888887665
No 172
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.83 E-value=7.5e-09 Score=87.28 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=68.9
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
+++.++|+++|+|| ++||++|....|.+.++++++ ++.++.|+.|. +.
T Consensus 28 l~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~----------------------------~~ 75 (117)
T 2xc2_A 28 LEQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK----------------------------LE 75 (117)
T ss_dssp HHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT----------------------------SH
T ss_pred HHhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc----------------------------cH
Confidence 34457899999999 999999999999999988776 78888887642 35
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++++.|++. .+|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 76 ~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G-~----~~~~l~~~l~~ 115 (117)
T 2xc2_A 76 ETARKYNIS------AMPTFIAI-KNGEKVGDVVG-A----SIAKVEDMIKK 115 (117)
T ss_dssp HHHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHH
T ss_pred HHHHHcCCC------ccceEEEE-eCCcEEEEEeC-C----CHHHHHHHHHH
Confidence 678899987 58997766 79999998866 2 34566666654
No 173
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.83 E-value=1.4e-08 Score=83.59 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=70.1
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.++|+++|+|| ++|||+|....|.+.++.++++ ++.++.|..|. +.+
T Consensus 16 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~ 64 (105)
T 3m9j_A 16 DAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD----------------------------CQD 64 (105)
T ss_dssp HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh----------------------------hHH
Confidence 3446899999999 9999999999999999999885 48888887542 356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|++
T Consensus 65 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~ 103 (105)
T 3m9j_A 65 VASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE 103 (105)
T ss_dssp HHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred HHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHH
Confidence 78889987 58999999 789999888655 24556555554
No 174
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.83 E-value=1.3e-08 Score=85.56 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.+++++ +.++.|..+. +.++++
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~----------------------------~~~l~~ 77 (114)
T 2oe3_A 29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE----------------------------SPDIAK 77 (114)
T ss_dssp HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT----------------------------CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 99999999999999999988864 8888887542 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|++. .+|+.+++ ++|+++..+.|.. .+++.+.|++
T Consensus 78 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~ 113 (114)
T 2oe3_A 78 ECEVT------AMPTFVLG-KDGQLIGKIIGAN-----PTALEKGIKD 113 (114)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHT
T ss_pred HCCCC------cccEEEEE-eCCeEEEEEeCCC-----HHHHHHHHHh
Confidence 89987 58997776 8999999886543 3556565553
No 175
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.83 E-value=8.7e-09 Score=90.34 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=74.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||.|| |+||++|+...|.|.++.+++.+ .+.|+-|..|. .++++.
T Consensus 40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe----------------------------~~e~a~ 89 (160)
T 2av4_A 40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE----------------------------VPDFNT 89 (160)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT----------------------------CCTTTT
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC----------------------------CHHHHH
Confidence 4689999999 99999999999999999999864 36677766653 345667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEE---------EEecCCCCCCCHHHHHHHHHhhHhhhhcCc---cccCCc
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQ---------ITINDLPVGRSVDETLRLVQAFQFVAEHGE---VCPAGW 525 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~---------~~~~~~~~~~~~~~il~~l~~l~~~~~~~~---~~~~~w 525 (547)
.|+|. ..||++++ ++|+.+. ...+..+ +-+++++.|+++--.+..|. .||.+.
T Consensus 90 ~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~---~k~~l~~~ie~~~r~a~~g~~~v~~p~~~ 154 (160)
T 2av4_A 90 MYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWPMN---NKQEFIDIVETIFRGARKGRGLVISPKDY 154 (160)
T ss_dssp TTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSCCC---CHHHHHHHHHHHHHHHHTTCSEEECSSCC
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEeecC---CHHHHHHHHHHHHHHhhcCCeEEECCCcc
Confidence 89988 58999888 5888874 3333332 34677777776655555543 456553
No 176
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.82 E-value=4.9e-09 Score=91.36 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=72.8
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
++.++.+||++||+|| ++||++|....|.+.++.++++ ++.++.|+.|.
T Consensus 39 ~~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~---------------------------- 87 (139)
T 3d22_A 39 LSEASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE---------------------------- 87 (139)
T ss_dssp HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------
T ss_pred HHHHhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc----------------------------
Confidence 3334456999999999 9999999999999999998884 68998887752
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.++++.|++. .+|+++++ ++|+++..+.|. . .+++.+.|+++-
T Consensus 88 ~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~-~----~~~l~~~l~~~~ 131 (139)
T 3d22_A 88 LSDFSASWEIK------ATPTFFFL-RDGQQVDKLVGA-N----KPELHKKITAIL 131 (139)
T ss_dssp SHHHHHHTTCC------EESEEEEE-ETTEEEEEEESC-C----HHHHHHHHHHHH
T ss_pred cHHHHHHcCCC------cccEEEEE-cCCeEEEEEeCC-C----HHHHHHHHHHHh
Confidence 35688899988 58998888 899999988665 2 355555555443
No 177
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.82 E-value=1.9e-08 Score=82.50 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=69.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
++.++|+++|+|| ++|||+|....|.+.++.++++ ++.++.|+.+. +.+
T Consensus 15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~ 63 (104)
T 2vim_A 15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ----------------------------NEE 63 (104)
T ss_dssp HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC----------------------------CHH
Confidence 4446899999999 9999999999999999998875 78888887752 346
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++.|++. ..|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 64 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G-~----~~~~l~~~l~~ 102 (104)
T 2vim_A 64 AAAKYSVT------AMPTFVFI-KDGKEVDRFSG-A----NETKLRETITR 102 (104)
T ss_dssp HHHHTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHH
T ss_pred HHHHcCCc------cccEEEEE-eCCcEEEEEeC-C----CHHHHHHHHHh
Confidence 77889987 48997777 49999998865 2 34566666654
No 178
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.81 E-value=2.4e-08 Score=82.50 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=71.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++.+
T Consensus 17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 66 (109)
T 2yzu_A 17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE----------------------------NPKTAM 66 (109)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC----------------------------CHhHHH
Confidence 4789999999 99999999999999999998864 58888887643 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~ 104 (109)
T 2yzu_A 67 RYRVM------SIPTVILF-KDGQPVEVLVGAQ----PKRNYQAKIEKH 104 (109)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTT
T ss_pred hCCCC------cCCEEEEE-eCCcEeeeEeCCC----CHHHHHHHHHHH
Confidence 89987 58999999 8999999886654 456777777654
No 179
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.81 E-value=1.7e-08 Score=89.66 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++ ++.++.|..+. +.++++
T Consensus 31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~l~~ 79 (153)
T 2wz9_A 31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG----------------------------VPEVSE 79 (153)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC----------------------------CHHHHH
Confidence 5899999999 9999999999999999998873 68888887653 346888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|. ..+++.+.|+++-
T Consensus 80 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~l 117 (153)
T 2wz9_A 80 KYEIS------SVPTFLFFK-NSQKIDRLDGA-----HAPELTKKVQRHA 117 (153)
T ss_dssp HTTCC------SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHHS
T ss_pred HcCCC------CCCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHHHh
Confidence 99988 589999999 99999888653 3456777776654
No 180
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.81 E-value=2.5e-10 Score=102.98 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=74.5
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.++.+..+||++||+|| ++|||+|....|.|.++.+.+.. ++.++.|++|.....
T Consensus 38 ~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~----------------------- 92 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEP----------------------- 92 (164)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSC-----------------------
T ss_pred HHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchH-----------------------
Confidence 45566668999999999 99999999999999998765543 567777777543210
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhhHh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQAFQF 513 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~l~~ 513 (547)
+.+.|++. +..+|+++++|++|+++..+.|.... ..+.+++++.|+++..
T Consensus 93 ----~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~ 148 (164)
T 1sen_A 93 ----KDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE 148 (164)
T ss_dssp ----SCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred ----HHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence 01123332 12489999999999999887665321 2467888888887653
No 181
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.80 E-value=3e-08 Score=81.58 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.++|+++|+|| ++|||+|....|.+.++.++++ .++.++.|+.+. +.++
T Consensus 17 ~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~----------------------------~~~~ 66 (106)
T 1xwb_A 17 KASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE----------------------------CEDI 66 (106)
T ss_dssp HHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT----------------------------CHHH
T ss_pred hcCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc----------------------------hHHH
Confidence 346899999999 9999999999999999998886 368888887642 3567
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.+.|++. ..|+.+++ ++|+++..+.| . +.+++.+.|++
T Consensus 67 ~~~~~v~------~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~i~~ 104 (106)
T 1xwb_A 67 AMEYNIS------SMPTFVFL-KNGVKVEEFAG-A----NAKRLEDVIKA 104 (106)
T ss_dssp HHHTTCC------SSSEEEEE-ETTEEEEEEES-C----CHHHHHHHHHH
T ss_pred HHHcCCC------cccEEEEE-cCCcEEEEEcC-C----CHHHHHHHHHH
Confidence 8889987 48986666 79999998865 3 34556666554
No 182
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.80 E-value=2.2e-08 Score=82.91 Aligned_cols=85 Identities=8% Similarity=0.018 Sum_probs=67.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++||++|....|.+.++.+++. ++.++.|..+. +.++++
T Consensus 20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~----------------------------~~~~~~ 68 (107)
T 1gh2_A 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ----------------------------CQGTAA 68 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc----------------------------CHHHHH
Confidence 5899999999 9999999999999999998883 68888877643 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.+++ ++|+++..+.|.. .+++.+.|++
T Consensus 69 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~-----~~~l~~~l~~ 104 (107)
T 1gh2_A 69 TNNIS------ATPTFQFF-RNKVRIDQYQGAD-----AVGLEEKIKQ 104 (107)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESSC-----HHHHHHHHHH
T ss_pred hcCCC------cccEEEEE-ECCeEEEEEeCCC-----HHHHHHHHHH
Confidence 89987 58998888 7999999886632 2445555554
No 183
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.80 E-value=2.8e-08 Score=81.61 Aligned_cols=87 Identities=15% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|+++|+|| ++|||+|....|.+.++.+++++ ++.++.|+.+. +.++++
T Consensus 17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 66 (105)
T 1fb6_A 17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE----------------------------APGIAT 66 (105)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc----------------------------hHHHHH
Confidence 4789999999 99999999999999999988865 47777776543 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+.+++ ++|+++..+.|..+ .+++.+.|++
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~----~~~l~~~l~~ 103 (105)
T 1fb6_A 67 QYNIR------SIPTVLFF-KNGERKESIIGAVP----KSTLTDSIEK 103 (105)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEEECCC----HHHHHHHHHH
T ss_pred hCCCC------cccEEEEE-eCCeEEEEEecCCC----HHHHHHHHHh
Confidence 89987 48997777 69999998876653 4556565554
No 184
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.79 E-value=2.1e-08 Score=85.84 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.+++++++ ++.++.|..|. +.++++
T Consensus 36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~----------------------------~~~l~~ 84 (125)
T 1r26_A 36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN----------------------------NSEIVS 84 (125)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT----------------------------CHHHHH
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Confidence 6899999999 9999999999999999998884 68888887753 356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.| . +.+++.+.|+++
T Consensus 85 ~~~v~------~~Pt~~i~-~~G~~~~~~~G-~----~~~~l~~~l~~~ 121 (125)
T 1r26_A 85 KCRVL------QLPTFIIA-RSGKMLGHVIG-A----NPGMLRQKLRDI 121 (125)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHH
T ss_pred HcCCC------cccEEEEE-eCCeEEEEEeC-C----CHHHHHHHHHHH
Confidence 99988 58997766 89999988866 2 345666666654
No 185
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.79 E-value=8.5e-09 Score=89.57 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=70.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++ ++||+|| ++||++|....|.+.+++++++ +.++.|+.+...+.. . .|.+.++++
T Consensus 31 ~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~-~------------------~d~~~~l~~ 86 (135)
T 3emx_A 31 QG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGER-E------------------LSAARLEMN 86 (135)
T ss_dssp TS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHH-H------------------HHHHHHHHH
T ss_pred CC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhh-h------------------hhhhHHHHH
Confidence 44 8999999 9999999999999999988774 889999886543321 1 133578899
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+|++. .+|+.++++ +|+++..+.|..+ .+.+.+.++++.
T Consensus 87 ~~~v~------~~Pt~~~~~-~G~~v~~~~G~~~----~~~~~~~i~~~~ 125 (135)
T 3emx_A 87 KAGVE------GTPTLVFYK-EGRIVDKLVGATP----WSLKVEKAREIY 125 (135)
T ss_dssp HHTCC------SSSEEEEEE-TTEEEEEEESCCC----HHHHHHHHHHHC
T ss_pred HcCCc------eeCeEEEEc-CCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 99998 589777776 9999999977654 334444455444
No 186
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-08 Score=87.13 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=65.0
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
..-+++++||+|| ++||++|....|.+.+++++|+..++.++.|..+. +.+
T Consensus 22 ~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~ 72 (137)
T 2dj0_A 22 ERDKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR----------------------------YTD 72 (137)
T ss_dssp HHSTTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT----------------------------CHH
T ss_pred hcCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc----------------------------CHH
Confidence 3345679999999 99999999999999999999976678888876643 233
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV 497 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~ 497 (547)
+++.|++........+|+++++ ++|+++..+.+..+.
T Consensus 73 ~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~~ 109 (137)
T 2dj0_A 73 VSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKK 109 (137)
T ss_dssp HHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCSS
T ss_pred HHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCch
Confidence 4555555310001148999999 799999988776553
No 187
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.77 E-value=1.2e-08 Score=88.83 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|++||+|| ++||++|....|.+.++++++++++ +.++.|..+ .+.++
T Consensus 33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~----------------------------~~~~~ 83 (140)
T 2dj1_A 33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT----------------------------SASML 83 (140)
T ss_dssp TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT----------------------------TCHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc----------------------------ccHHH
Confidence 5799999999 9999999999999999999998764 666655432 23678
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|++. .+|+++++ ++|+ +..+.+.. +.+++.+.|+++-
T Consensus 84 ~~~~~v~------~~Pt~~~~-~~G~-~~~~~g~~----~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 84 ASKFDVS------GYPTIKIL-KKGQ-AVDYDGSR----TQEEIVAKVREVS 123 (140)
T ss_dssp HHHTTCC------SSSEEEEE-ETTE-EEECCSCC----CHHHHHHHHHHHH
T ss_pred HHHCCCC------ccCeEEEE-ECCc-EEEcCCCC----CHHHHHHHHHHhc
Confidence 8999988 58999999 6898 54554433 5677777777654
No 188
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.77 E-value=2.8e-08 Score=83.59 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++|||+|....|.+.++.++|+ ++.++.|..|. +.++.+
T Consensus 27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~----------------------------~~~~~~ 75 (118)
T 2vm1_A 27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE----------------------------LKDVAE 75 (118)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------SHHHHH
T ss_pred CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc----------------------------CHHHHH
Confidence 4899999999 9999999999999999998876 68888887642 356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++-
T Consensus 76 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 76 AYNVE------AMPTFLFI-KDGEKVDSVVGG-----RKDDIHTKIVALM 113 (118)
T ss_dssp HTTCC------SBSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred HcCCC------cCcEEEEE-eCCeEEEEecCC-----CHHHHHHHHHHHh
Confidence 89987 58998877 799999888652 3466666666543
No 189
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=2.2e-08 Score=98.66 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=70.6
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
...++|++||+|| ++||++|+...|.+.++.+++++ ++.++.|.+|. +.+
T Consensus 22 ~~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~ 71 (287)
T 3qou_A 22 EQSMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDA----------------------------EQM 71 (287)
T ss_dssp TTTTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTT----------------------------CHH
T ss_pred HhcCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCcc----------------------------CHH
Confidence 3345899999999 99999999999999999999974 48888887653 247
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
+++.|+|. .+|+++++ ++|+++..+.|..+ .+.+.+.++
T Consensus 72 ~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~~~----~~~l~~~l~ 110 (287)
T 3qou_A 72 IAAQFGLR------AIPTVYLF-QNGQPVDGFQGPQP----EEAIRALLD 110 (287)
T ss_dssp HHHTTTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHH
T ss_pred HHHHcCCC------CCCeEEEE-ECCEEEEEeeCCCC----HHHHHHHHH
Confidence 88899988 58999999 69999998876653 334444444
No 190
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.76 E-value=2.3e-08 Score=83.45 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++|||+|....+.+.++.++++ ++.++.|+.|. +.++.
T Consensus 24 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 72 (113)
T 1ti3_A 24 GSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE----------------------------LKAVA 72 (113)
T ss_dssp TSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT----------------------------CHHHH
T ss_pred hcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc----------------------------cHHHH
Confidence 45899999999 9999999999999999998875 68888887642 35677
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+.|++. .+|+.+++ ++|+++..+.|
T Consensus 73 ~~~~v~------~~Pt~~~~-~~G~~~~~~~g 97 (113)
T 1ti3_A 73 EEWNVE------AMPTFIFL-KDGKLVDKTVG 97 (113)
T ss_dssp HHHHCS------STTEEEEE-ETTEEEEEEEC
T ss_pred HhCCCC------cccEEEEE-eCCEEEEEEec
Confidence 889987 58998888 69999998876
No 191
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.23 E-value=9.7e-10 Score=94.68 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=72.6
Q ss_pred eeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 375 KNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 375 ~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
+.++++..+||++||+|| ++||++|....|.+ .++.+.++. ++.++.|..+..
T Consensus 10 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------- 65 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------- 65 (130)
Confidence 467788888999999999 99999999999998 777776653 466666655421
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcC-CCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDD-KQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~-~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+.++.+.|++. .+|+++++|+ +|++ +..+.|..+. +++.+.|+++
T Consensus 66 ----~~~~~~~~~~v~------~~Pt~~~~d~~~G~~~~~~~~~G~~~~----~~l~~~l~~~ 114 (130)
T 2lst_A 66 ----EGQELARRYRVP------GTPTFVFLVPKAGAWEEVGRLFGSRPR----AEFLKELRQV 114 (130)
Confidence 235677888987 5899999995 6999 7777665542 3444444443
No 192
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.75 E-value=2e-08 Score=84.83 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++++|+|| ++|||+|+...|.+.+++++++ ..++.+..+...+. +...++.+
T Consensus 28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~----------------------~~~~~~~~ 81 (118)
T 1zma_A 28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQL----------------------NDLQAFRS 81 (118)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGH----------------------HHHHHHHH
T ss_pred CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcH----------------------HHHHHHHH
Confidence 5789999999 9999999999999999998774 45666666543221 12356788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.|++. .+|++++++ +|+++..+.|.. ..+++.+.|
T Consensus 82 ~~~i~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l 116 (118)
T 1zma_A 82 RYGIP------TVPGFVHIT-DGQINVRCDSSM----SAQEIKDFA 116 (118)
T ss_dssp HHTCC------SSCEEEEEE-TTEEEEECCTTC----CHHHHHHHH
T ss_pred HcCCC------CCCeEEEEE-CCEEEEEecCCC----CHHHHHHHh
Confidence 99998 589999994 999988775544 345665554
No 193
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.72 E-value=4.7e-08 Score=83.68 Aligned_cols=90 Identities=8% Similarity=0.040 Sum_probs=68.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
.+|+++|+|| ++||++|....|.+.++.++|.. .++.++.|.++ .+.
T Consensus 32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~----------------------------~~~ 82 (127)
T 3h79_A 32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE----------------------------KYP 82 (127)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT----------------------------TCH
T ss_pred CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc----------------------------ccH
Confidence 4799999999 99999999999999999998863 23566665543 346
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~~l~~l 511 (547)
++++.|++. .+|+++++++.+++. ..+.|. ++.+++++.|+++
T Consensus 83 ~l~~~~~v~------~~Pt~~~~~~g~~~~~~~~~G~----~~~~~l~~~i~~~ 126 (127)
T 3h79_A 83 DVIERMRVS------GFPTMRYYTRIDKQEPFEYSGQ----RYLSLVDSFVFQN 126 (127)
T ss_dssp HHHHHTTCC------SSSEEEEECSSCSSSCEECCSC----CCHHHHHHHHHHH
T ss_pred hHHHhcCCc------cCCEEEEEeCCCCCCceEecCC----ccHHHHHHHHHhc
Confidence 788999998 589999998777653 334332 3678888877653
No 194
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.72 E-value=6.5e-08 Score=80.77 Aligned_cols=86 Identities=7% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|....|.+.++.++++ ++.++.|..+. +.++++
T Consensus 25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~----------------------------~~~~~~ 73 (112)
T 1syr_A 25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE----------------------------VSEVTE 73 (112)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT----------------------------THHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC----------------------------CHHHHH
Confidence 6899999999 9999999999999999998875 58888887653 236778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++ ++|+++..+.|. +.+++.+.|+++
T Consensus 74 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 110 (112)
T 1syr_A 74 KENIT------SMPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEKY 110 (112)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred HcCCC------cccEEEEE-ECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence 89987 58986666 699999888654 346666666643
No 195
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.72 E-value=3.4e-08 Score=81.99 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC--CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI--NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|++||+|| ++||++|....|.+.++.+++.+. ++.++.|..+ .+.++
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~l 70 (111)
T 3uvt_A 20 AEGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT----------------------------AERNI 70 (111)
T ss_dssp HSSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT----------------------------TCHHH
T ss_pred cCCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc----------------------------ccHhH
Confidence 3789999999 999999999999999998877543 5666666543 23567
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++.|++. .+|+.+++ ++|+++..+.|.. +.+++.+.|++
T Consensus 71 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 109 (111)
T 3uvt_A 71 CSKYSVR------GYPTLLLF-RGGKKVSEHSGGR----DLDSLHRFVLS 109 (111)
T ss_dssp HHHTTCC------SSSEEEEE-ETTEEEEEECSCC----SHHHHHHHHHH
T ss_pred HHhcCCC------cccEEEEE-eCCcEEEeccCCc----CHHHHHHHHHh
Confidence 8889987 58998888 7999998886553 46677777654
No 196
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.71 E-value=2.1e-08 Score=85.09 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.+++++++. ++.++.|..+. +.++++
T Consensus 20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 69 (122)
T 3aps_A 20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQ 69 (122)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999875 68888887753 246778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++++|++ ..+.|......+.+++.+.|+++-
T Consensus 70 ~~~v~------~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 70 KAGIK------AYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp HTTCC------SSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred HcCCC------ccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHH
Confidence 99988 58999999888774 444343111124566766666543
No 197
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=1.1e-08 Score=88.26 Aligned_cols=92 Identities=9% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++|++||+|| ++||++|....|.+.+++++++.. ++.++.|..+.. ..+.
T Consensus 24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~----------------------------~~~~ 74 (133)
T 2dj3_A 24 PKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN----------------------------DITN 74 (133)
T ss_dssp TTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS----------------------------CCCC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC----------------------------HHHH
Confidence 4899999999 999999999999999999999753 577777665421 1122
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEE-EEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQ-ITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~-~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|++++++++|++.. .+.+.. .+.+++.+.|++.-
T Consensus 75 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg~---~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 75 DQYKVE------GFPTIYFAPSGDKKNPIKFEGGN---RDLEHLSKFIDEHA 117 (133)
T ss_dssp SSCCCS------SSSEEEEECTTCTTSCEECCSSC---CSTTHHHHHHHHHS
T ss_pred hhcCCC------cCCEEEEEeCCCcccceEecCCC---cCHHHHHHHHHHhc
Confidence 467777 5899999998776543 233221 23456666666543
No 198
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.68 E-value=6.4e-08 Score=81.78 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|....|.+.++.++++. ++.++.|+.+. +.++++
T Consensus 29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 78 (121)
T 2i1u_A 29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT----------------------------NPETAR 78 (121)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999988864 58888887643 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
.|++. .+|+++++ ++|+++..+.|.. ..+++.+.|++
T Consensus 79 ~~~i~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~ 115 (121)
T 2i1u_A 79 NFQVV------SIPTLILF-KDGQPVKRIVGAK----GKAALLRELSD 115 (121)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHTCS
T ss_pred hcCCC------cCCEEEEE-ECCEEEEEecCCC----CHHHHHHHHHH
Confidence 89987 58998888 5999998886655 34566666554
No 199
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=5.6e-08 Score=92.04 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|++||+|| ++||++|+...|.+.+++++|++ .+.++.|..|. +.++++
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~l~~ 78 (222)
T 3dxb_A 29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAP 78 (222)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CTTTGG
T ss_pred cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCC----------------------------CHHHHH
Confidence 5799999999 99999999999999999999875 38888887753 123456
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|.. +.+++.+.|+.+-
T Consensus 79 ~~~v~------~~Pt~~~~~-~G~~~~~~~G~~----~~~~l~~~l~~~l 117 (222)
T 3dxb_A 79 KYGIR------GIPTLLLFK-NGEVAATKVGAL----SKGQLKEFLDANL 117 (222)
T ss_dssp GGTCC------SBSEEEEEE-TTEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred HcCCC------cCCEEEEEE-CCeEEEEecccc----ChHHHHHHHHhhc
Confidence 78887 589988885 899999887654 4567777777654
No 200
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.65 E-value=3.8e-08 Score=84.00 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCeEEEEEEeCCCCC--------------CcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCc
Q psy224 383 KGQYVVLFFYPLDFTF--------------VCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDM 448 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp--------------~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~ 448 (547)
++|++||+|| ++||+ +|....|.+.++.++|++ ++.++.|..|.
T Consensus 20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~-------------------- 77 (123)
T 1oaz_A 20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------- 77 (123)
T ss_dssp CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS--------------------
T ss_pred CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC--------------------
Confidence 5899999999 99999 999999999999988865 47888887653
Q ss_pred ceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 449 AIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 449 ~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.+++++|++. .+|+++++ ++|+++..+.|.. +.+++.+.|++
T Consensus 78 --------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 120 (123)
T 1oaz_A 78 --------NPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA 120 (123)
T ss_dssp --------CTTTGGGGTCC------BSSEEEEE-ESSSEEEEEESCC----CHHHHHHHHTT
T ss_pred --------CHHHHHHcCCC------ccCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHH
Confidence 23456788987 58999999 8999999887655 35666666654
No 201
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.65 E-value=1.9e-08 Score=94.43 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=78.6
Q ss_pred CeeeccccCCceeeEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccC
Q psy224 363 EFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNK 442 (547)
Q Consensus 363 ~~~l~~~~~G~~~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 442 (547)
+..+.+ +++ ..+.....++|++||+|| ++||++|....|.+.+++++++. .+.++.|.++.
T Consensus 96 ~~~v~~-l~~--~~f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~-------------- 156 (210)
T 3apq_A 96 DPEIIT-LER--REFDAAVNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGD-------------- 156 (210)
T ss_dssp CTTSEE-CCH--HHHHHHHHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT--------------
T ss_pred CCceEE-ecH--HHHHHHHccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCc--------------
Confidence 334444 444 244333346899999999 99999999999999999998864 48888876543
Q ss_pred CCCCCcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 443 GGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 443 ~~~~~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.++++.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 157 --------------~~~l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~l 201 (210)
T 3apq_A 157 --------------DRMLCRMKGVN------SYPSLFIF-RSGMAAVKYNGDR----SKESLVAFAMQHV 201 (210)
T ss_dssp --------------CHHHHHHTTCC------SSSEEEEE-CTTSCCEECCSCC----CHHHHHHHHHHHH
T ss_pred --------------cHHHHHHcCCC------cCCeEEEE-ECCCceeEecCCC----CHHHHHHHHHHhC
Confidence 34677889987 58999999 8999988876543 4567777776543
No 202
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.64 E-value=4.7e-08 Score=84.52 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.++++||+|| +.| |++|+...|.|.++.++|..+.++|+-|.+ |.++++
T Consensus 33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdv----------------------------De~~~l 83 (140)
T 2qgv_A 33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADL----------------------------EQSEAI 83 (140)
T ss_dssp TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCH----------------------------HHHHHH
T ss_pred CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEEC----------------------------CCCHHH
Confidence 4567889999 998 999999999999999998653366655433 235789
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+|+|. .+||.+++ ++|+++.+..|..+ -+++.+.|+++
T Consensus 84 A~~ygV~------sIPTlilF-k~G~~v~~~~G~~~----k~~l~~~i~~~ 123 (140)
T 2qgv_A 84 GDRFGAF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGL 123 (140)
T ss_dssp HHHHTCC------SSSEEEEE-ETTEEEEEEESCCC----HHHHHHHHHHH
T ss_pred HHHcCCc------cCCEEEEE-ECCEEEEEEecCCC----HHHHHHHHHHH
Confidence 9999998 69999999 79999999987654 34555555543
No 203
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.63 E-value=1.8e-07 Score=81.53 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++.+||+|| ++||++|....|.+.++.++|+. ++.++.|..+. +.++++
T Consensus 49 ~~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 98 (140)
T 1v98_A 49 GAPLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE----------------------------HPGLAA 98 (140)
T ss_dssp CCCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT----------------------------CHHHHH
T ss_pred cCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHHH
Confidence 3334899999 99999999999999999998875 48888887653 246788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 99 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~ 136 (140)
T 1v98_A 99 RYGVR------SVPTLVLF-RRGAPVATWVGAS----PRRVLEERLRPY 136 (140)
T ss_dssp HTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred HCCCC------ccCEEEEE-eCCcEEEEEeCCC----CHHHHHHHHHHH
Confidence 89987 58999988 6999999887655 355666666654
No 204
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.63 E-value=1.1e-07 Score=80.40 Aligned_cols=87 Identities=9% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++|+++|+|| ++||++|....|.+.+++++|+. .++.++.|.++.. . +.
T Consensus 24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------~-----~~---- 76 (121)
T 2djj_A 24 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-----------------D-----VP---- 76 (121)
T ss_dssp TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-----------------C-----CS----
T ss_pred CCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-----------------c-----cc----
Confidence 6899999999 99999999999999999999986 2678888876531 1 11
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+ ++. .+|++++++++|++ +..+.|. .+.+++.+.|++.
T Consensus 77 ---~--~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~ 115 (121)
T 2djj_A 77 ---D--EIQ------GFPTIKLYPAGAKGQPVTYSGS----RTVEDLIKFIAEN 115 (121)
T ss_dssp ---S--CCS------SSSEEEEECSSCTTSCCCCCCC----SCHHHHHHHHHHT
T ss_pred ---c--ccC------cCCeEEEEeCcCCCCceEecCC----CCHHHHHHHHHhc
Confidence 1 555 58999999988884 4444333 3567777777654
No 205
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.63 E-value=1.3e-07 Score=81.48 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred CeEEEEEEeCCCC--CCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 385 QYVVLFFYPLDFT--FVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 385 k~~ll~f~~~~~c--p~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++||+|| ++|| ++|+...|.|.++.++|.. .++++-|.. |.+++++.
T Consensus 34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdv----------------------------De~~~la~ 83 (137)
T 2qsi_A 34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAA----------------------------EAERGLMA 83 (137)
T ss_dssp SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECG----------------------------GGHHHHHH
T ss_pred CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEEC----------------------------CCCHHHHH
Confidence 49999999 9999 9999999999999999864 466655544 33578999
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+|+|. .+||.+++ ++|+++.+..|..+. +++.+.|++
T Consensus 84 ~ygV~------siPTlilF-kdG~~v~~~vG~~~k----~~l~~~l~~ 120 (137)
T 2qsi_A 84 RFGVA------VCPSLAVV-QPERTLGVIAKIQDW----SSYLAQIGA 120 (137)
T ss_dssp HHTCC------SSSEEEEE-ECCEEEEEEESCCCH----HHHHHHHHH
T ss_pred HcCCc------cCCEEEEE-ECCEEEEEEeCCCCH----HHHHHHHHH
Confidence 99998 69999999 799999999877643 344455443
No 206
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=98.59 E-value=8.6e-09 Score=91.23 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=63.3
Q ss_pred cCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHH--HHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 380 SQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAE--EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~--~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+...+|+++|+|| ++||++|+...|.+.+..+ ++.+ ..++.|.+|.... .
T Consensus 40 A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~---------------~---------- 91 (151)
T 3ph9_A 40 AQKSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETT---------------D---------- 91 (151)
T ss_dssp HHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCS---------------C----------
T ss_pred HHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCch---------------h----------
Confidence 3336899999999 9999999999998886522 2222 2345555542100 0
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV------GRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 511 (547)
.+..|++. .+|+++++|++|+++....|.... ..+++++|+.++..
T Consensus 92 --~~~~~~v~------~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 92 --KNLSPDGQ------YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp --GGGCTTCC------CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred --hHhhcCCC------CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 01234544 589999999999999988776221 13567777776654
No 207
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=9.4e-08 Score=82.94 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+||++||+|| ++||++|....|.|.+++++|. ++.++.|..+.. . +
T Consensus 29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~-----------------~--------------~ 74 (135)
T 2dbc_A 29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSC-----------------I--------------E 74 (135)
T ss_dssp SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSS-----------------C--------------S
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcC-----------------c--------------c
Confidence 4589999999 9999999999999999998874 577877766531 0 2
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCC---CCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVG---RSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~---~~~~~il~~l~~l~ 512 (547)
.|++. .+|++++++ +|+++..+.|..+.+ ...+++.+.|++..
T Consensus 75 ~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 75 HYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp SCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred cCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 56776 589999996 999999998765432 24667767776543
No 208
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.58 E-value=2.6e-08 Score=83.77 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
++|+++|+|| ++||++|....|.+.++.+++++.+ +.++.|..+. +.++
T Consensus 23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 73 (120)
T 1mek_A 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE----------------------------ESDL 73 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT----------------------------CCSS
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC----------------------------CHHH
Confidence 5789999999 9999999999999999999887543 4555544421 2356
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLR--QITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~--~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+.|++. .+|+++++ ++|+++ ..+.|. .+.+++.+.|+++
T Consensus 74 ~~~~~v~------~~Pt~~~~-~~g~~~~~~~~~g~----~~~~~l~~~l~~~ 115 (120)
T 1mek_A 74 AQQYGVR------GYPTIKFF-RNGDTASPKEYTAG----READDIVNWLKKR 115 (120)
T ss_dssp HHHHTCC------SSSEEEEE-ESSCSSSCEECCCC----SSHHHHHHHHHTT
T ss_pred HHHCCCC------cccEEEEE-eCCCcCCcccccCc----cCHHHHHHHHHhc
Confidence 7889987 58999999 688876 555442 2567787777754
No 209
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=97.94 E-value=9.7e-09 Score=84.35 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++|+++|+|| ++|||+|....+.+.++.++++. ++.++.|+.+. +.++++
T Consensus 18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~----------------------------~~~~~~ 67 (106)
T 2yj7_A 18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE----------------------------NPNTAA 67 (106)
Confidence 5789999999 99999999999999999988864 46666655432 235667
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCC
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLP 496 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~ 496 (547)
.|++. ..|+.+++ ++|+++..+.|..+
T Consensus 68 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~~~ 94 (106)
T 2yj7_A 68 QYGIR------SIPTLLLF-KNGQVVDRLVGAQP 94 (106)
Confidence 78887 48999999 79999988765543
No 210
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.52 E-value=1.9e-07 Score=73.38 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=59.2
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
+.|++|| ++|||+|....|.+.++.+++++ ++.++.|..|. +.++++.|+
T Consensus 3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~ 52 (85)
T 1nho_A 3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV----------------------------DREKAIEYG 52 (85)
T ss_dssp CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT----------------------------CGGGGGGTC
T ss_pred EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHhCC
Confidence 4689999 99999999999999999998864 57888776642 234567788
Q ss_pred CcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 466 VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 466 v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+. .+|++++ +|++ .+.|.. +.+++.+.|++
T Consensus 53 v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~ 82 (85)
T 1nho_A 53 LM------AVPAIAI---NGVV--RFVGAP----SREELFEAIND 82 (85)
T ss_dssp SS------CSSEEEE---TTTE--EEECSS----CCHHHHHHHHH
T ss_pred ce------eeCEEEE---CCEE--EEccCC----CHHHHHHHHHH
Confidence 87 5899887 8998 554543 33556655554
No 211
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.51 E-value=3.6e-07 Score=87.20 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++|+++|+|| ++||++|....|.+.+++++++..+ +.++.|.++ .+.+
T Consensus 30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~----------------------------~~~~ 80 (241)
T 3idv_A 30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT----------------------------SASV 80 (241)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT----------------------------TCHH
T ss_pred hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc----------------------------CCHH
Confidence 36899999999 9999999999999999999998765 666666553 3457
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++.|++. .+|++++++ +|+++. +.+. ++.+++.+.+++..
T Consensus 81 l~~~~~v~------~~Pt~~~~~-~g~~~~-~~g~----~~~~~l~~~i~~~~ 121 (241)
T 3idv_A 81 LASRFDVS------GYPTIKILK-KGQAVD-YEGS----RTQEEIVAKVREVS 121 (241)
T ss_dssp HHHHTTCC------SSSEEEEEE-TTEEEE-CCSC----SCHHHHHHHHHHHH
T ss_pred HHHhcCCC------cCCEEEEEc-CCCccc-ccCc----ccHHHHHHHHhhcc
Confidence 88999998 589999996 677663 4333 35677777776544
No 212
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.50 E-value=8.3e-07 Score=83.86 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=67.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+++++|+|| ++||++|+...|.+.++++++++ .++.++.|..+ .+.+
T Consensus 133 ~~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~----------------------------~~~~ 183 (226)
T 1a8l_A 133 DQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI----------------------------EYPE 183 (226)
T ss_dssp CSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG----------------------------GCHH
T ss_pred CCCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc----------------------------cCHH
Confidence 3455599999 99999999999999999999974 36777777553 2356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+++.|++. .+|+++++ ++|+.+..+.|.. +.+++.+.|++
T Consensus 184 l~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 223 (226)
T 1a8l_A 184 WADQYNVM------AVPKIVIQ-VNGEDRVEFEGAY----PEKMFLEKLLS 223 (226)
T ss_dssp HHHHTTCC------SSCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred HHHhCCCc------ccCeEEEE-eCCceeEEEcCCC----CHHHHHHHHHH
Confidence 78899998 58997776 6999998887655 34566666654
No 213
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.50 E-value=1.2e-07 Score=80.74 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEEEeCC-------CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 380 SQYKGQYVVLFFYPLD-------FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 380 ~~~~gk~~ll~f~~~~-------~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+.++|+++|+|| ++ |||+|....|.+.++++++++ ++.++.|..+... .|
T Consensus 20 ~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~----------------- 77 (123)
T 1wou_A 20 EQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW----------------- 77 (123)
T ss_dssp HTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH-----------------
T ss_pred HHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hh-----------------
Confidence 3445899999999 99 999999999999999888754 7899999887532 12
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcE
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
.|.+..+.+.|++. .+|+++++++.+++
T Consensus 78 -~d~~~~~~~~~~i~------~~Pt~~~~~~~~~~ 105 (123)
T 1wou_A 78 -KDPNNDFRKNLKVT------AVPTLLKYGTPQKL 105 (123)
T ss_dssp -HCTTCHHHHHHCCC------SSSEEEETTSSCEE
T ss_pred -hchhHHHHHHCCCC------eeCEEEEEcCCceE
Confidence 14456788899998 58999999874333
No 214
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=98.50 E-value=6e-07 Score=81.05 Aligned_cols=106 Identities=8% Similarity=-0.058 Sum_probs=66.4
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHH---HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceee
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA---FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPI 452 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~---l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~ 452 (547)
.+..+..+||+++|+|| ++||++|+...+. ..++.+.+.+ ++.++-|..|...++.+...
T Consensus 31 a~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~--------------- 93 (173)
T 3ira_A 31 AFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYM--------------- 93 (173)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHH---------------
T ss_pred HHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHH---------------
Confidence 34555557999999999 9999999997773 2344444433 56777776654322221110
Q ss_pred ecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC-----CCCHHHHHHHHHh
Q psy224 453 LSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV-----GRSVDETLRLVQA 510 (547)
Q Consensus 453 l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~-----~~~~~~il~~l~~ 510 (547)
..+...+|+. .+|+++++|++|++++.. +..+. ...+.++|+.+++
T Consensus 94 -----~~~q~~~gv~------g~Pt~v~l~~dG~~v~~~-ty~p~~~~~~~~~f~~~L~~v~~ 144 (173)
T 3ira_A 94 -----TVCQIILGRG------GWPLNIIMTPGKKPFFAG-TYIPKNTRFNQIGMLELVPRIKE 144 (173)
T ss_dssp -----HHHHHHHSCC------CSSEEEEECTTSCEEEEE-SSCCSSCBTTBCCHHHHHHHHHH
T ss_pred -----HHHHHHcCCC------CCcceeeECCCCCceeee-eeCCCCcCCCCCCHHHHHHHHHH
Confidence 1122235776 589999999999999875 22211 1246667766654
No 215
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.50 E-value=5.6e-07 Score=86.36 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.++++++++ .++.++.|+++. |.+.++
T Consensus 29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~--------------------------~~~~~l 81 (244)
T 3q6o_A 29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE--------------------------ETNSAV 81 (244)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS--------------------------TTTHHH
T ss_pred CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc--------------------------hhhHHH
Confidence 4689999999 99999999999999999999986 468888888643 235788
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE---EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL---RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v---~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|++. .+|+++++++.+++ +.... .+.+.+++.+.+.+.-
T Consensus 82 ~~~~~v~------~~Pt~~~~~~g~~~~~g~~~~~----~g~~~~~l~~~i~~~l 126 (244)
T 3q6o_A 82 CRDFNIP------GFPTVRFFXAFTXNGSGAVFPV----AGADVQTLRERLIDAL 126 (244)
T ss_dssp HHHTTCC------SSSEEEEECTTCCSSSCEECCC----TTCCHHHHHHHHHHHH
T ss_pred HHHcCCC------ccCEEEEEeCCCcCCCCeeEec----CCCCHHHHHHHHHHHH
Confidence 9999998 58999999863321 11121 2246777777776544
No 216
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.50 E-value=1.9e-07 Score=73.37 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=59.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
.++|++|| ++|||+|....|.+.++.++++ .++.++.|..+. +.++++.|
T Consensus 3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~~ 52 (85)
T 1fo5_A 3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVME----------------------------NPQKAMEY 52 (85)
T ss_dssp CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSS----------------------------SCCTTTST
T ss_pred ceEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCC----------------------------CHHHHHHC
Confidence 57899999 9999999999999999998886 368888887753 12344567
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
++. .+|++++ +|++ .+.|.. +.+++.+.|++
T Consensus 53 ~v~------~~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~ 83 (85)
T 1fo5_A 53 GIM------AVPTIVI---NGDV--EFIGAP----TKEALVEAIKK 83 (85)
T ss_dssp TTC------CSSEEEE---TTEE--ECCSSS----SSHHHHHHHHH
T ss_pred CCc------ccCEEEE---CCEE--eeecCC----CHHHHHHHHHH
Confidence 877 4899887 8888 444432 34566666553
No 217
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.47 E-value=6.6e-07 Score=95.26 Aligned_cols=93 Identities=5% Similarity=0.044 Sum_probs=75.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.+++++|++ .++.++.|.++. |.+.++
T Consensus 29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~--------------------------d~~~~l 81 (519)
T 3t58_A 29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE--------------------------ETNSAV 81 (519)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS--------------------------GGGHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc--------------------------cccHHH
Confidence 4689999999 99999999999999999999986 368888888764 234688
Q ss_pred HHHhCCcccCCCcceeEEEEEcC---CCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDD---KQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~---~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
++.|+|. .+|+++++++ +|+.+..+.+. ++.+++.+.|++.-
T Consensus 82 ~~~~~V~------~~PTl~~f~~g~~~G~~~~~~~g~----~~~~~L~~~l~~~l 126 (519)
T 3t58_A 82 CREFNIA------GFPTVRFFQAFTKNGSGATLPGAG----ANVQTLRMRLIDAL 126 (519)
T ss_dssp HHHTTCC------SBSEEEEECTTCCSCCCEEECCSS----CCHHHHHHHHHHHH
T ss_pred HHHcCCc------ccCEEEEEcCcccCCCceeEecCC----CCHHHHHHHHHHHH
Confidence 8999998 5899999997 77776666444 36777777776654
No 218
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.44 E-value=3.2e-08 Score=84.79 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.++|++||+|| ++||++|....|.+.++.++|+ ++.++.|..|. +.++.
T Consensus 34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~ 82 (130)
T 1wmj_A 34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE----------------------------LKEVA 82 (130)
T ss_dssp TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT----------------------------SGGGH
T ss_pred hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc----------------------------hHHHH
Confidence 36899999999 9999999999999999998875 57777665532 34677
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEec
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITIN 493 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~ 493 (547)
+.|++. .+|+.+++ ++|+++..+.|
T Consensus 83 ~~~~v~------~~Pt~~~~-~~g~~~~~~~g 107 (130)
T 1wmj_A 83 EKYNVE------AMPTFLFI-KDGAEADKVVG 107 (130)
T ss_dssp HHHTCC------SSCCCCBC-TTTTCCBCCCT
T ss_pred HHcCCC------ccceEEEE-eCCeEEEEEeC
Confidence 889987 58987666 89999887755
No 219
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.41 E-value=2.1e-07 Score=81.51 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=58.3
Q ss_pred CeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhhCCcE--EEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 385 QYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKKINTQ--VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 385 k~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~~~~~--vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
+.+||+|+ ++| |++|+...|.|.+++++| . ++. ++.|..|. +.++
T Consensus 35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~----------------------------~~~l 83 (142)
T 2es7_A 35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ----------------------------SEAI 83 (142)
T ss_dssp CSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH----------------------------HHHH
T ss_pred CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC----------------------------CHHH
Confidence 44677887 877 999999999999999988 3 466 77765431 3568
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|+|. .+|+++++ ++|+++..+.|.. +.+++.+.|+++-
T Consensus 84 a~~~~V~------~iPT~~~f-k~G~~v~~~~G~~----~~~~l~~~i~~~l 124 (142)
T 2es7_A 84 GDRFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSIV 124 (142)
T ss_dssp HHTTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHHH
T ss_pred HHhcCCC------cCCeEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence 8899998 58999999 8999999887655 3456666666544
No 220
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=98.41 E-value=3.9e-06 Score=81.71 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
...++++.+++.++..++..++ ..+ ++.|+++||+ ++++.+.+.+.+.++.++..+..+....
T Consensus 201 ~~~~~~~~~~~~i~~~i~~~l~-----~~~~~~~ivL~GG~-a~~~~l~~~l~~~l~~~v~~~~~p~~a~ 264 (272)
T 3h1q_A 201 EIMRVVRPVIEKMALIVKEVIK-----NYDQTLPVYVVGGT-AYLTGFSEEFSRFLGKEVQVPIHPLLVT 264 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----TSCSSCCEEEESGG-GGSTTHHHHHHHHHSSCCBCCSSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hcCCCCEEEEECCc-cchhhHHHHHHHHhCCCccccCChHHHH
Confidence 4678888889988877777655 445 7899999998 9999999999999999998877765443
No 221
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.38 E-value=2e-06 Score=82.45 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=67.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh---CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK---INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
++++++.|++|| ++|||+|+...|.+.+++.++++ .++.+..|..+ .+
T Consensus 135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~----------------------------~~ 185 (243)
T 2hls_A 135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY----------------------------EN 185 (243)
T ss_dssp HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETT----------------------------TC
T ss_pred HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECc----------------------------cC
Confidence 467888999999 99999999999999999999852 45776666443 23
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.++++.|++. .+|++++ +|+++ +.|.. +.+++++.|++..
T Consensus 186 ~~~~~~~~V~------~vPt~~i---~G~~~--~~G~~----~~~~l~~~l~~~~ 225 (243)
T 2hls_A 186 PDIADKYGVM------SVPSIAI---NGYLV--FVGVP----YEEDFLDYVKSAA 225 (243)
T ss_dssp HHHHHHTTCC------SSSEEEE---TTEEE--EESCC----CHHHHHHHHHHHH
T ss_pred HHHHHHcCCe------eeCeEEE---CCEEE--EeCCC----CHHHHHHHHHHHh
Confidence 5678899988 5899887 78875 54444 4677777777644
No 222
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.33 E-value=3.9e-07 Score=87.13 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++||+|| ++||++|....|.|.+++.+|. ++.++.|..+. . . +++
T Consensus 132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~----~-------------~------------l~~ 179 (245)
T 1a0r_P 132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN----T-------------G------------AGD 179 (245)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH----H-------------C------------CTT
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc----H-------------H------------HHH
Confidence 5899999999 9999999999999999999986 58888876532 0 0 123
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++. +|+++..++|.... ....+++.+.|++..
T Consensus 180 ~~~I~------~~PTll~~~-~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 180 RFSSD------VLPTLLVYK-GGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp SSCTT------TCSEEEEEE-TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred HCCCC------CCCEEEEEE-CCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 56776 589998885 99999999776432 235667777777654
No 223
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.7e-06 Score=85.63 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++||+|| ++||++|....|.+.++++++.. .+.++.|.+|.. .+.++++
T Consensus 34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~--------------------------~~~~l~~ 85 (298)
T 3ed3_A 34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLN--------------------------KNKALCA 85 (298)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTST--------------------------TTHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCc--------------------------cCHHHHH
Confidence 4789999999 99999999999999999999875 388999888731 2578889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcE-----------------EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNL-----------------RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v-----------------~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|+.+++++ |++ ...+. -.++.+.+++.+...
T Consensus 86 ~~~I~------~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~----G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 86 KYDVN------GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYS----GARTLAPIVDFSLSR 140 (298)
T ss_dssp HTTCC------BSSEEEEEEC-CCC-------------CCCEEEECC----SCCSHHHHHHHHHTT
T ss_pred hCCCC------ccceEEEEEC-Cceeecccccccccccccccceeec----CCcCHHHHHHHHHHh
Confidence 99998 5899999974 553 23332 234678888887654
No 224
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.31 E-value=6.6e-07 Score=73.94 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=59.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+++++|+|+ ++|||+|....|.+.++.++ .++.++-|.+|...++ ..+++..
T Consensus 24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~~------------------------Sn~IA~~ 75 (112)
T 3iv4_A 24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERDL------------------------SDYIAKK 75 (112)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHHH------------------------HHHHHHH
T ss_pred CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCchh------------------------hHHHHHH
Confidence 789999999 99999999999999999874 3677777765432111 2568999
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEe
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITI 492 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~ 492 (547)
|||.. ..|+.+++ ++|++++...
T Consensus 76 ~~V~h-----~sPq~il~-k~G~~v~~~S 98 (112)
T 3iv4_A 76 TNVKH-----ESPQAFYF-VNGEMVWNRD 98 (112)
T ss_dssp HTCCC-----CSSEEEEE-ETTEEEEEEE
T ss_pred hCCcc-----CCCeEEEE-ECCEEEEEee
Confidence 99984 37999999 7999998874
No 225
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.27 E-value=6.5e-08 Score=80.22 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=60.0
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.++++++++|+.||+|| ++|||+|....|.+.++.++|. .|.++.... .+
T Consensus 4 ~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~----------------------~~ 53 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-------YVECSPNGP----------------------GT 53 (106)
T ss_dssp HHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCT----------------------TS
T ss_pred hhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-------EEEEecccc----------------------cc
Confidence 56777888898999999 9999999999999998886553 222221000 02
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+.++++.|+|. .+|++++ +|+. +.|.. +.+++.+.+
T Consensus 54 ~~~~l~~~~~V~------~~PT~~i---~G~~---~~G~~----~~~~l~~~~ 90 (106)
T 3kp8_A 54 PQAQECTEAGIT------SYPTWII---NGRT---YTGVR----SLEALAVAS 90 (106)
T ss_dssp CCCHHHHHTTCC------SSSEEEE---TTEE---EESCC----CHHHHHHHH
T ss_pred hhHHHHHHcCCe------EeCEEEE---CCEE---ecCCC----CHHHHHHHh
Confidence 457899999998 5899665 7764 44443 455555543
No 226
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=98.27 E-value=1.8e-06 Score=72.80 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
++++||+|| ++||++|+...|.|.++.++|. ++.++-|..|.. ++.
T Consensus 23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~-------------------------------~~~ 68 (118)
T 3evi_A 23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC-------------------------------IQH 68 (118)
T ss_dssp TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT-------------------------------STT
T ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------HHH
Confidence 459999999 9999999999999999999885 578877765420 135
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l 511 (547)
|++. .+|+.+++ ++|+++....|..+. ....+++-..|++.
T Consensus 69 ~~v~------~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 69 YHDN------CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp CCGG------GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 6776 58999999 699999999877653 23456666666543
No 227
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.26 E-value=4e-06 Score=64.36 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
..|.|| ++||++|+...|.+.++.++++. ++.++.|. +.+++++|++
T Consensus 2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~-------------------------------~~~~~~~~~v 48 (77)
T 1ilo_A 2 MKIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK-------------------------------EMDQILEAGL 48 (77)
T ss_dssp EEEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC-------------------------------SHHHHHHHTC
T ss_pred cEEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec-------------------------------CHHHHHHCCC
Confidence 358899 99999999999999999888753 35555442 3567789998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. .+|++++ +|+++..
T Consensus 49 ~------~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 49 T------ALPGLAV---DGELKIM 63 (77)
T ss_dssp S------SSSCEEE---TTEEEEC
T ss_pred C------cCCEEEE---CCEEEEc
Confidence 8 5899887 8988765
No 228
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.19 E-value=6.5e-06 Score=78.28 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCC--cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN--TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+++++|+|| ++||++|....|.+.+++++++.++ +.++.|..+ .+.++
T Consensus 146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 196 (241)
T 3idv_A 146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT----------------------------AETDL 196 (241)
T ss_dssp HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT----------------------------TCHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC----------------------------CCHHH
Confidence 4689999999 9999999999999999999997643 666655443 24568
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+++|++. .+|+.++++ +|+.+. +.|. ++.+++++.|++..
T Consensus 197 ~~~~~v~------~~Pt~~~~~-~g~~~~-~~g~----~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 197 AKRFDVS------GYPTLKIFR-KGRPYD-YNGP----REKYGIVDYMIEQS 236 (241)
T ss_dssp HHHTTCC------SSSEEEEEE-TTEEEE-CCSC----CSHHHHHHHHHHHT
T ss_pred HHHcCCc------ccCEEEEEE-CCeEEE-ecCC----CCHHHHHHHHHhhh
Confidence 8999998 589999986 687765 4332 35778888877543
No 229
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=98.13 E-value=2.3e-06 Score=80.48 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+|+++||+|| ++||++|....|.|.+++++|. ++.++.|..+ . ..+++
T Consensus 119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~----~-------------------------~~l~~ 166 (217)
T 2trc_P 119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS----N-------------------------TGAGD 166 (217)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH----H-------------------------HTCST
T ss_pred CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC----c-------------------------HHHHH
Confidence 5799999999 9999999999999999998884 6888887654 0 01223
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCC---CCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPV---GRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~---~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++. +|+++..+.|..+. ....+++.+.|++..
T Consensus 167 ~~~i~------~~PTl~~~~-~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 167 RFSSD------VLPTLLVYK-GGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp TSCGG------GCSEEEEEE-TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred HCCCC------CCCEEEEEE-CCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 56776 589999994 99999998765442 223566767766543
No 230
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.12 E-value=7.5e-06 Score=82.93 Aligned_cols=87 Identities=8% Similarity=0.098 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHH-------HHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIA-------FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~-------l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
++++++|+|| |+||+ |...+|. +.+++++++..++.++.|.++.
T Consensus 27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~--------------------------- 77 (350)
T 1sji_A 27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK--------------------------- 77 (350)
T ss_dssp TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---------------------------
T ss_pred hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---------------------------
Confidence 4689999999 99999 9888888 7778877776678888776643
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+++++|+|. .+|+.+++ ++|++ ..+.|. ++.+++.+.++..
T Consensus 78 -~~~l~~~~~v~------~~Pt~~~~-~~g~~-~~~~G~----~~~~~l~~~i~~~ 120 (350)
T 1sji_A 78 -EAKLAKKLGFD------EEGSLYVL-KGDRT-IEFDGE----FAADVLVEFLLDL 120 (350)
T ss_dssp -THHHHHHHTCC------STTEEEEE-ETTEE-EEECSC----CCHHHHHHHHHTT
T ss_pred -CHHHHHhcCCC------ccceEEEE-ECCcE-EEecCC----CCHHHHHHHHHHh
Confidence 35788999998 58999999 68884 455443 3567777776653
No 231
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=98.12 E-value=1.4e-05 Score=78.06 Aligned_cols=65 Identities=11% Similarity=0.226 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhhh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRDA 353 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~a 353 (547)
.++++.+++.++++-.+.... .+....++|+++||. ++|+.+++.+++.+++++.++..+..+.|
T Consensus 181 ~~~di~a~~~~~v~~~l~~~~----~~~~~~~~vvl~GGv-a~n~~lr~~l~~~~g~~~~~p~~p~~~~A 245 (276)
T 4ehu_A 181 KIEDIVAGIHTSVAKRVSSLV----KRIGVQRNVVMVGGV-ARNSGIVRAMAREINTEIIVPDIPQLTGA 245 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HHHCCCSSEEEESGG-GGCHHHHHHHHHHHTSCEECCSSGGGHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HhcccCCeEEEecCc-cchHHHHHHHHHHHCCCeeeCCCcchHHH
Confidence 789999999999877665432 223447899999996 99999999999999999999887766544
No 232
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.12 E-value=8.5e-06 Score=83.59 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-----CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-----INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-----~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
++++++|.|| ++||++|....|.+.++++++++ .++.++.|.++ .+
T Consensus 21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~----------------------------~~ 71 (382)
T 2r2j_A 21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD----------------------------QH 71 (382)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT----------------------------TC
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC----------------------------cc
Confidence 4789999999 99999999999999999999963 23667776643 34
Q ss_pred hHHHHHhCCcccCCCcceeEEEEEcCCCcEEEE-EecCCCCCCCHHHHHHHHHhhH
Q psy224 458 MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQI-TINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~-~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.++++.|+|. .+|+.+++ ++|+++.. +.|. ++.+++++.++..-
T Consensus 72 ~~l~~~~~v~------~~Pt~~~f-~~G~~~~~~~~G~----~~~~~l~~~i~~~~ 116 (382)
T 2r2j_A 72 SDIAQRYRIS------KYPTLKLF-RNGMMMKREYRGQ----RSVKALADYIRQQK 116 (382)
T ss_dssp HHHHHHTTCC------EESEEEEE-ETTEEEEEECCSC----CSHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------cCCEEEEE-eCCcEeeeeecCc----chHHHHHHHHHHhc
Confidence 6788999998 58998887 58998864 5343 35677777776543
No 233
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=98.08 E-value=4e-05 Score=67.57 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.+|+++|+|+ +.||+.|+..-... .++.+.+. .++.++-+..+.++ +..
T Consensus 41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~--------------------------~~~ 92 (153)
T 2dlx_A 41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEE--------------------------GQR 92 (153)
T ss_dssp HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHH--------------------------HHH
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHh--------------------------HHH
Confidence 4899999999 99999998875432 22222222 25666666664321 245
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.+.|++. ..|+.+++|++ |+.+..+ +. .+.++.++.|+++.
T Consensus 93 l~~~y~v~------~~P~~~fld~~~G~~l~~~-~g----~~~~~fl~~L~~~l 135 (153)
T 2dlx_A 93 YIQFYKLG------DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFL 135 (153)
T ss_dssp HHHHHTCC------SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHH
T ss_pred HHHHcCCC------CCCEEEEEeCCCCcEeeec-CC----CCHHHHHHHHHHHH
Confidence 66788887 58999999998 8777765 32 36788888887765
No 234
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=98.08 E-value=1.7e-05 Score=71.57 Aligned_cols=106 Identities=6% Similarity=0.003 Sum_probs=70.2
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHhhC----CcEEEEEeCCChhhHHHHhhccccCCCCCCccee
Q psy224 383 KGQYVVLFFYPL-------DFTFVCPTEIIAFSDRAEEFKKI----NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIP 451 (547)
Q Consensus 383 ~gk~~ll~f~~~-------~~cp~C~~~~~~l~~~~~~~~~~----~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp 451 (547)
++.++||.|| | .||++|+...|.+.++.++|... .+.+.-|
T Consensus 36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv--------------------------- 87 (178)
T 3ga4_A 36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV--------------------------- 87 (178)
T ss_dssp TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE---------------------------
T ss_pred CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE---------------------------
Confidence 4568999999 8 49999999999999999999631 2223222
Q ss_pred eecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEE-----------EEEecCCC--CCCCHHHHHHHHHhhHhhhhcC
Q psy224 452 ILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLR-----------QITINDLP--VGRSVDETLRLVQAFQFVAEHG 518 (547)
Q Consensus 452 ~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~-----------~~~~~~~~--~~~~~~~il~~l~~l~~~~~~~ 518 (547)
=.|.+++++++|+|. .+|+.+++.+.+... ..+ ... .++..+.+.+.|.+-- .-...
T Consensus 88 -D~d~~~~la~~~~I~------siPtl~~F~~g~~~~~~~~~~~~~~~~~y--~~~~~~~~~ae~la~fi~~~t-~~~i~ 157 (178)
T 3ga4_A 88 -DVNEVPQLVKDLKLQ------NVPHLVVYPPAESNKQSQFEWKTSPFYQY--SLVPENAENTLQFGDFLAKIL-NISIT 157 (178)
T ss_dssp -ETTTCHHHHHHTTCC------SSCEEEEECCCCGGGGGGCCTTTSCCEEE--CCCGGGTTCHHHHHHHHHHHH-TCCCC
T ss_pred -ECccCHHHHHHcCCC------CCCEEEEEcCCCCCCccccccccCCccee--ecccCCCcCHHHHHHHHHHhc-CCCcc
Confidence 234568999999998 689999996655433 222 222 2567777777775422 22224
Q ss_pred ccccCCcc
Q psy224 519 EVCPAGWK 526 (547)
Q Consensus 519 ~~~~~~w~ 526 (547)
+.-|.+|.
T Consensus 158 I~rp~ny~ 165 (178)
T 3ga4_A 158 VPQAFNVQ 165 (178)
T ss_dssp CCCSCC--
T ss_pred ccCCCChH
Confidence 55566663
No 235
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.04 E-value=2.1e-06 Score=71.74 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=58.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh-hCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~-~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
+.+.+||+|| +.||++|...-+.+...++.-. .+.+.++-|..+.. ....++
T Consensus 17 ~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~--------------------------~~~~la 69 (116)
T 3dml_A 17 KAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP--------------------------LPPGLE 69 (116)
T ss_dssp --CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC--------------------------CCTTCB
T ss_pred cCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC--------------------------CchhHH
Confidence 4568999999 9999999988765543332211 01244444444331 112344
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
..|++. .+||.++++ +|+.+.+..|..+ .+++++.|+.+.
T Consensus 70 ~~~~V~------g~PT~i~f~-~G~ev~Ri~G~~~----~~~f~~~L~~~l 109 (116)
T 3dml_A 70 LARPVT------FTPTFVLMA-GDVESGRLEGYPG----EDFFWPMLARLI 109 (116)
T ss_dssp CSSCCC------SSSEEEEEE-TTEEEEEEECCCC----HHHHHHHHHHHH
T ss_pred HHCCCC------CCCEEEEEE-CCEEEeeecCCCC----HHHHHHHHHHHH
Confidence 566666 589999998 9999999987764 356666666554
No 236
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.02 E-value=1.1e-05 Score=85.99 Aligned_cols=90 Identities=10% Similarity=0.148 Sum_probs=71.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|.|| ++||++|....|.+.++.++++..++.++.|.++. +..+++
T Consensus 30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 80 (504)
T 2b5e_A 30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE----------------------------NQDLCM 80 (504)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT----------------------------CHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999987678888887543 357889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++. +|+. ...+.|. ++.+.+.+.+++.-
T Consensus 81 ~~~v~------~~Pt~~~~~-~g~~~~~~~~~G~----~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 81 EHNIP------GFPSLKIFK-NSDVNNSIDYEGP----RTAEAIVQFMIKQS 121 (504)
T ss_dssp HTTCC------SSSEEEEEE-TTCTTCEEECCSC----CSHHHHHHHHHHHT
T ss_pred hcCCC------cCCEEEEEe-CCccccceeecCC----CCHHHHHHHHHHhc
Confidence 99998 589999995 6775 5555443 35677777776543
No 237
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.01 E-value=3.8e-06 Score=88.95 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
.+|+++|+|| ++||++|....|.+.+++++|++. ++.++.|..+.. ++.
T Consensus 369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----------------------------~~~ 418 (481)
T 3f8u_A 369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----------------------------DVP 418 (481)
T ss_dssp TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----------------------------CCC
T ss_pred CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----------------------------hhH
Confidence 4899999999 999999999999999999999864 677776665431 122
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNL-RQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.|++. .+|+.++++++|++ ...+.|. ++.+++++.|++..
T Consensus 419 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 419 SPYEVR------GFPTIYFSPANKKLNPKKYEGG----RELSDFISYLQREA 460 (481)
T ss_dssp TTCCCC------SSSEEEEECTTCTTSCEECCSC----CSHHHHHHHHHHHC
T ss_pred hhCCCc------ccCEEEEEeCCCeEeeeEeCCC----CCHHHHHHHHHHhc
Confidence 456776 58999999988874 4444333 36788888887644
No 238
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.01 E-value=2.3e-05 Score=73.97 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++|++|| ++||++|+...|.+.++..++. ++.++.|..+ .+.++++
T Consensus 135 ~~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~----------------------------~~~~l~~ 183 (229)
T 2ywm_A 135 DIPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDAS----------------------------ENQDLAE 183 (229)
T ss_dssp CSCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGG----------------------------GCHHHHH
T ss_pred CCCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECC----------------------------CCHHHHH
Confidence 4556688999 9999999999999999998873 6777777543 2356888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.|++. .+|++++ +|++ ..+.|.. +.+++.+.|++.
T Consensus 184 ~~~v~------~~Pt~~~---~G~~-~~~~G~~----~~~~l~~~l~~~ 218 (229)
T 2ywm_A 184 QFQVV------GVPKIVI---NKGV-AEFVGAQ----PENAFLGYIMAV 218 (229)
T ss_dssp HTTCC------SSSEEEE---GGGT-EEEESCC----CHHHHHHHHHHH
T ss_pred HcCCc------ccCEEEE---CCEE-EEeeCCC----CHHHHHHHHHHH
Confidence 99998 5899887 7884 4465544 345666665544
No 239
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.00 E-value=1.3e-05 Score=84.75 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
++++++|+|| ++||++|....|.+.+++++++.. +.++.|.++. +.++++
T Consensus 20 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~----------------------------~~~l~~ 69 (481)
T 3f8u_A 20 SAGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA----------------------------NTNTCN 69 (481)
T ss_dssp SSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC----------------------------CHHHHH
Confidence 3489999999 999999999999999999998764 6777766543 457889
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+.+++ ++|+++..+.|. ++.+++++.++...
T Consensus 70 ~~~v~------~~Ptl~~~-~~g~~~~~~~G~----~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 70 KYGVS------GYPTLKIF-RDGEEAGAYDGP----RTADGIVSHLKKQA 108 (481)
T ss_dssp HTTCC------EESEEEEE-ETTEEEEECCSC----SSHHHHHHHHHHHT
T ss_pred hcCCC------CCCEEEEE-eCCceeeeecCc----cCHHHHHHHHHhhc
Confidence 99998 58988888 689887777544 35677777776543
No 240
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=97.99 E-value=4.7e-06 Score=86.63 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-C------cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-N------TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~------~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
++|++||+|| ++||++|+...|.+.+++++|++. + +.++.|.+|.
T Consensus 41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~--------------------------- 92 (470)
T 3qcp_A 41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS--------------------------- 92 (470)
T ss_dssp GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---------------------------
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---------------------------
Confidence 3489999999 999999999999999999998743 2 6777776542
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCc
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQN 486 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~ 486 (547)
+.+++++|+|. .+|++++++++|.
T Consensus 93 -~~~la~~y~V~------~~PTlilf~~gg~ 116 (470)
T 3qcp_A 93 -EVDLCRKYDIN------FVPRLFFFYPRDS 116 (470)
T ss_dssp -CHHHHHHTTCC------SSCEEEEEEESSC
T ss_pred -CHHHHHHcCCC------ccCeEEEEECCCc
Confidence 35788999998 5899999976553
No 241
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.88 E-value=3e-05 Score=87.12 Aligned_cols=92 Identities=7% Similarity=0.138 Sum_probs=71.2
Q ss_pred ccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCCh
Q psy224 379 LSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM 458 (547)
Q Consensus 379 l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 458 (547)
++++++++++|+|| ++||++|...+|.+.+++++|+. ++.++.|.++. +.
T Consensus 450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~ 499 (780)
T 3apo_A 450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTI----------------------------HE 499 (780)
T ss_dssp SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT----------------------------CH
T ss_pred HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------CH
Confidence 44557899999999 99999999999999999999974 58888887653 23
Q ss_pred HHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 459 SIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 459 ~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.+++.|++. .+|++++++ +|++ +.+.|.. +.+++.+.++.+.
T Consensus 500 ~~~~~~~v~------~~Pt~~~~~-~g~~-~~~~g~~----~~~~l~~fi~~~~ 541 (780)
T 3apo_A 500 GLCNMYNIQ------AYPTTVVFN-QSSI-HEYEGHH----SAEQILEFIEDLR 541 (780)
T ss_dssp HHHHHTTCC------SSSEEEEEE-TTEE-EEECSCS----CHHHHHHHHHHHH
T ss_pred HHHHHcCCC------cCCeEEEEc-CCce-eeecCcc----cHHHHHHHHHhhc
Confidence 477889988 489999995 6876 5554433 4567777776654
No 242
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.88 E-value=2e-05 Score=73.91 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=66.7
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----Chhh-------------HHHHhhcc
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFS-------------HLAWCNIP 439 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~-------------~~~~~~~~ 439 (547)
+.+....+|++|+.|| ..|||+|....+.|.++.+ .+++++.+... .+.. ...|.+..
T Consensus 79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~ 153 (216)
T 1eej_A 79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVM 153 (216)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHH
Confidence 4455557899999999 9999999999999988764 37888776542 1111 11121111
Q ss_pred ccCCCCCCcce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 440 RNKGGLGDMAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 440 ~~~~~~~~~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
. ..++++ +...+.+.+++++||+. .+|++++. +|+. ..|.. +.+++.+.|++.
T Consensus 154 ~----~~~~~~~~~~~~v~~~~~l~~~~gV~------gtPt~v~~--dG~~---~~G~~----~~~~l~~~l~~~ 209 (216)
T 1eej_A 154 A----GKSVAPASCDVDIADHYALGVQLGVS------GTPAVVLS--NGTL---VPGYQ----PPKEMKEFLDEH 209 (216)
T ss_dssp T----TCCCCCCCCSCCHHHHHHHHHHHTCC------SSSEEECT--TSCE---EESCC----CHHHHHHHHHHH
T ss_pred h----CCCCChhHHHHHHHHHHHHHHHcCCC------ccCEEEEc--CCeE---ecCCC----CHHHHHHHHHHh
Confidence 1 113332 22334567889999998 58988553 4643 23433 344555555543
No 243
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.85 E-value=1.5e-05 Score=80.98 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=64.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
++|+++|+|| ++||++|+...|.+.++.++|++. ++.++.|..+... .
T Consensus 266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~ 314 (361)
T 3uem_A 266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------------------------------V 314 (361)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------------------------------C
T ss_pred CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------------------------------h
Confidence 5799999999 999999999999999999999864 4666665443310 2
Q ss_pred HHhCCcccCCCcceeEEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHh
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDK-QNLRQITINDLPVGRSVDETLRLVQA 510 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~-G~v~~~~~~~~~~~~~~~~il~~l~~ 510 (547)
+.|++. .+|+.++++++ |+....+.|. ++.+++++.|++
T Consensus 315 ~~~~v~------~~Pt~~~~~~~~~~~~~~~~G~----~~~~~l~~~l~~ 354 (361)
T 3uem_A 315 EAVKVH------SFPTLKFFPASADRTVIDYNGE----RTLDGFKKFLES 354 (361)
T ss_dssp SSCCCC------SSSEEEEECSSSSCCCEECCSC----SSHHHHHHHHTT
T ss_pred hhcCCc------ccCeEEEEECCCCcceeEecCC----CCHHHHHHHHHh
Confidence 345776 58999999655 5666666443 467788877664
No 244
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.84 E-value=1.4e-05 Score=89.92 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+|++||+|| ++||++|+...|.+.+++++++. ++.++.|..+. +..+++
T Consensus 674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 723 (780)
T 3apo_A 674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA----------------------------YPQTCQ 723 (780)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT----------------------------CHHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999999965 58888876542 346788
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.|++. .+|+++++ ++|+++..+.|..-...+.+++.+.|+++-
T Consensus 724 ~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l 766 (780)
T 3apo_A 724 KAGIK------AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL 766 (780)
T ss_dssp HTTCC------SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred hcCCC------cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence 89987 58999999 788887666553101235677777776543
No 245
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=97.81 E-value=2.9e-05 Score=70.06 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=37.9
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
...+-+..+|++|+.|| ..|||+|....+.|.++.+++.+ ++++...
T Consensus 14 ~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~ 60 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE 60 (175)
T ss_dssp SCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence 44566667899999999 99999999999999999988754 5555444
No 246
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.72 E-value=0.00016 Score=73.57 Aligned_cols=88 Identities=8% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHH------HHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEI------IAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~------~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
++++++|.|| |+||++|...- |.+.++.++++..++.++.|.++.
T Consensus 29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~---------------------------- 79 (367)
T 3us3_A 29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---------------------------- 79 (367)
T ss_dssp HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT----------------------------
T ss_pred hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc----------------------------
Confidence 4689999999 99999874432 577888888876667777776643
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+.+++++|+|. .+||.+++. +|+.+ .+.| .+..+.+++.++..
T Consensus 80 ~~~l~~~~~V~------~~PTl~~f~-~G~~~-~y~G----~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 80 DAAVAKKLGLT------EEDSIYVFK-EDEVI-EYDG----EFSADTLVEFLLDV 122 (367)
T ss_dssp THHHHHHHTCC------STTEEEEEE-TTEEE-ECCS----CCSHHHHHHHHHHH
T ss_pred cHHHHHHcCCC------cCceEEEEE-CCcEE-EeCC----CCCHHHHHHHHHHh
Confidence 35788999998 589999995 78874 4433 33577887777654
No 247
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=97.59 E-value=8e-05 Score=68.45 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.+|++|+.|| ..|||+|....+.+.++.+++.+ ++.+.-+..+
T Consensus 24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence 5799999999 99999999999999999988865 6888888775
No 248
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=97.50 E-value=0.00022 Score=68.06 Aligned_cols=120 Identities=8% Similarity=0.022 Sum_probs=70.9
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC---Ch--h---------hHHHHhhccccC
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD---SH--F---------SHLAWCNIPRNK 442 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d---~~--~---------~~~~~~~~~~~~ 442 (547)
+.+-.-.+|++|+.|+ ..|||+|....+.+.++.++ .++++..+... +. . +..++.+.+...
T Consensus 90 i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~ 165 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS 165 (241)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred ceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4454446789999999 99999999999998876654 25777665541 11 0 111222222111
Q ss_pred CCCCCcce--------eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 443 GGLGDMAI--------PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 443 ~~~~~~~f--------p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+...++.- .-..+.+.++++.+|+. .+|++++.|.+|++ ....|.. +.+++.+.|++.
T Consensus 166 ~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~------gtPt~vi~~~~G~~-~~~~G~~----~~~~L~~~l~~~ 231 (241)
T 1v58_A 166 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN------VTPAIYYMSKENTL-QQAVGLP----DQKTLNIIMGNK 231 (241)
T ss_dssp TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC------SSCEEEEEETTTEE-EEEESSC----CHHHHHHHTTC-
T ss_pred hccCCCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCE-EEecCCC----CHHHHHHHHHHH
Confidence 11111110 01223346778899988 58999999888976 3444444 345666665543
No 249
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.48 E-value=7.6e-05 Score=79.39 Aligned_cols=87 Identities=10% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSI 460 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~ 460 (547)
.+|++||+|| ++||++|....|.+.++.++++. .++.++.|..+.. . .
T Consensus 375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-----------------~------------~ 424 (504)
T 2b5e_A 375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN-----------------D------------V 424 (504)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC-----------------C------------C
T ss_pred CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc-----------------c------------c
Confidence 4799999999 99999999999999999999973 3566666654210 0 0
Q ss_pred HHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 461 ARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 461 ~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
.+ |++. .+|+.+++ ++|+. +..+.|. ++.+++++.|++.
T Consensus 425 ~~-~~v~------~~Pt~~~~-~~G~~~~~~~~~G~----~~~~~l~~~i~~~ 465 (504)
T 2b5e_A 425 RG-VVIE------GYPTIVLY-PGGKKSESVVYQGS----RSLDSLFDFIKEN 465 (504)
T ss_dssp SS-CCCS------SSSEEEEE-CCTTSCCCCBCCSC----CCHHHHHHHHHHH
T ss_pred cc-CCce------ecCeEEEE-eCCceecceEecCC----CCHHHHHHHHHhc
Confidence 11 5666 58999988 78876 4444332 3577787777754
No 250
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=97.43 E-value=0.00011 Score=67.26 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-++.
T Consensus 24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence 5799999999 99999999999999999888865 677776665
No 251
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.34 E-value=0.00099 Score=62.37 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=60.3
Q ss_pred CCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 381 QYKGQYVVLFFYPLD-FTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
+.+++++|++|| +. ||++|....|.+.++.+. ..++.++.|.++.++ +.+
T Consensus 19 ~~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~--------------------------~~~ 69 (226)
T 1a8l_A 19 KMVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPE--------------------------GKE 69 (226)
T ss_dssp GCCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHH--------------------------HHH
T ss_pred hcCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCcc--------------------------cHH
Confidence 345677889999 99 999999999999988754 235777766655321 356
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcEE-EEEecCCCCCCCHHHHHHH
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNLR-QITINDLPVGRSVDETLRL 507 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v~-~~~~~~~~~~~~~~~il~~ 507 (547)
+++.|++. .+|+.+++ ++|+.. ..+.+..+ ...+.+.+..
T Consensus 70 ~~~~~~v~------~~Pt~~~~-~~g~~~~~~~~G~~~-~~~l~~~l~~ 110 (226)
T 1a8l_A 70 LAKRYRID------RAPATTIT-QDGKDFGVRYFGLPA-GHEFAAFLED 110 (226)
T ss_dssp HHHHTTCC------SSSEEEEE-ETTBCCSEEEESCCC-TTHHHHHHHH
T ss_pred HHHHcCCC------cCceEEEE-cCCceeeEEEeccCc-HHHHHHHHHH
Confidence 78899988 58999888 466543 45544432 3234444433
No 252
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.28 E-value=0.0004 Score=53.63 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
.++.|| ++|||+|....+.+.++.+++ ++.+..+..|.. ..+.++++.||+
T Consensus 3 ~~~~f~-~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~-------------------------~~~~~~~~~~gv 53 (80)
T 2k8s_A 3 SKAIFY-HAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTD-------------------------KARIAEAEKAGV 53 (80)
T ss_dssp EEEEEE-ECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTC-------------------------SSTHHHHHHHTC
T ss_pred ceEEEe-CCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCC-------------------------hhhHHHHHHcCC
Confidence 367788 999999999999888765443 455544444320 023567788998
Q ss_pred cccCCCcceeEEEEEcCCCcEEEE
Q psy224 467 LNEETGIPYRGLFIIDDKQNLRQI 490 (547)
Q Consensus 467 ~~~~~g~~~p~~~lid~~G~v~~~ 490 (547)
. ..|+.++ +|++++.
T Consensus 54 ~------~vPt~~i---~g~~~~~ 68 (80)
T 2k8s_A 54 K------SVPALVI---DGAAFHI 68 (80)
T ss_dssp C------EEEEEEE---TTEEEEE
T ss_pred C------cCCEEEE---CCEEEEe
Confidence 7 5898766 7887653
No 253
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=97.20 E-value=8.2e-05 Score=61.94 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=44.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
+++++++ || ++|||+|....+.|.++..+ +.++-|..+.. ..+ ...++.+
T Consensus 18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~--~~~---------------------~~~~l~~ 67 (116)
T 2e7p_A 18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVGAS-----YKVVELDELSD--GSQ---------------------LQSALAH 67 (116)
T ss_dssp TSSSEEE-EE-CTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTT--HHH---------------------HHHHHHH
T ss_pred cCCCEEE-EE-CCCChhHHHHHHHHHHcCCC-----eEEEEccCCCC--hHH---------------------HHHHHHH
Confidence 4566555 99 99999999999988776432 33333322221 000 0146778
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
.|++. .+|++ ++ +|+++..+
T Consensus 68 ~~~v~------~~Pt~-~~--~g~~v~~~ 87 (116)
T 2e7p_A 68 WTGRG------TVPNV-FI--GGKQIGGC 87 (116)
T ss_dssp HHSCC------SSCEE-EE--TTEEEECH
T ss_pred HhCCC------CcCEE-EE--CCEEECCh
Confidence 89987 48988 44 68887655
No 254
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=97.20 E-value=0.00067 Score=62.06 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..+||+|....+.|.++.+++.. .+.+..++.
T Consensus 21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 5789999999 99999999999999999988864 577777765
No 255
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=97.19 E-value=0.00054 Score=58.65 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=61.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.++++++.|| ++ |++|....|.|.++.++|+. .+.++-|..|. .+.++.
T Consensus 22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~----------------------------~~~~a~ 70 (133)
T 2djk_A 22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKA----------------------------FGAHAG 70 (133)
T ss_dssp TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTT----------------------------TGGGTT
T ss_pred CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHH----------------------------hHHHHH
Confidence 4578999999 99 78999999999999998864 26776665542 233456
Q ss_pred HhCCcccCCCcceeEEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDD-KQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
.||+..+ .+|+.++++. +|+. +... ..-....+++.+.++.+-
T Consensus 71 ~~gi~~~----~iPtl~i~~~~~g~~-~~~~--~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 71 NLNLKTD----KFPAFAIQEVAKNQK-FPFD--QEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp TTTCCSS----SSSEEEEECTTTCCB-CCCC--SSSCCCHHHHHHHHHHHH
T ss_pred HcCCCcc----cCCEEEEEecCcCcc-cCCC--CccccCHHHHHHHHHHHH
Confidence 6887621 1799999974 5766 4432 001223566667776554
No 256
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=97.16 E-value=0.0006 Score=63.51 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC----ChhhH-------------HHHhhccccCCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD----SHFSH-------------LAWCNIPRNKGGL 445 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d----~~~~~-------------~~~~~~~~~~~~~ 445 (547)
.+|++|+.|| ..|||+|....+.|.++.+ .++++..+... .+... ..|.+.+. .
T Consensus 85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~----~ 155 (211)
T 1t3b_A 85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK----G 155 (211)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT----T
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHc----C
Confidence 5789999999 9999999999999888543 36777655332 11110 11111110 0
Q ss_pred CCcce---eeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 446 GDMAI---PILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 446 ~~~~f---p~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..+++ ....+.+.++++.||+. .+|++++ .+|+. ..|.. +.+++.+.|++.
T Consensus 156 ~~~~~~~~~~~v~~~~~l~~~~gV~------gTPt~vi--~nG~~---~~G~~----~~~~l~~~l~~~ 209 (211)
T 1t3b_A 156 NLPKEVKTPNIVKKHYELGIQFGVR------GTPSIVT--STGEL---IGGYL----KPADLLRALEET 209 (211)
T ss_dssp CCCSSCCCSSHHHHHHHHHHHHTCC------SSCEEEC--TTSCC---CCSCC----CHHHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCC------cCCEEEE--eCCEE---ecCCC----CHHHHHHHHHhc
Confidence 01211 11223457888999998 5899876 46762 22222 456676766654
No 257
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=97.11 E-value=0.00078 Score=53.12 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCCc
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v~ 467 (547)
|+.|| ++||++|....+.|.++..++ +.-| -.|.+.+++.+|++.
T Consensus 3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~v----------------------------did~~~~l~~~~g~~ 47 (87)
T 1ttz_A 3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSV----------------------------FIDDDAALESAYGLR 47 (87)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEE----------------------------ECTTCHHHHHHHTTT
T ss_pred EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEE----------------------------ECCCCHHHHHHhCCC
Confidence 78899 999999999888887654321 1111 123456788889875
Q ss_pred ccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 468 NEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 468 ~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|+.++ .+|+.+. +.. +.+++.+.|++.
T Consensus 48 -------vPtl~~--~~G~~v~---g~~----~~~~L~~~l~~~ 75 (87)
T 1ttz_A 48 -------VPVLRD--PMGRELD---WPF----DAPRLRAWLDAA 75 (87)
T ss_dssp -------CSEEEC--TTCCEEE---SCC----CHHHHHHHHHTC
T ss_pred -------cCeEEE--ECCEEEe---CCC----CHHHHHHHHHHH
Confidence 798776 6899874 333 456677776653
No 258
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.09 E-value=0.0008 Score=55.19 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=45.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
..|+.|| ++|||+|....+.|.++.+++ ++.+.-|..| .+.+++..|+
T Consensus 30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId----------------------------~d~~l~~~yg 77 (107)
T 2fgx_A 30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINID----------------------------GNEHLTRLYN 77 (107)
T ss_dssp CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETT----------------------------TCHHHHHHST
T ss_pred cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECC----------------------------CCHHHHHHhC
Confidence 5688899 999999999999999888764 4444444433 2345667788
Q ss_pred CcccCCCcceeEEEEEcCCCcEE
Q psy224 466 VLNEETGIPYRGLFIIDDKQNLR 488 (547)
Q Consensus 466 v~~~~~g~~~p~~~lid~~G~v~ 488 (547)
+. +|+.+++ .+|+++
T Consensus 78 v~-------VP~l~~~-~dG~~v 92 (107)
T 2fgx_A 78 DR-------VPVLFAV-NEDKEL 92 (107)
T ss_dssp TS-------CSEEEET-TTTEEE
T ss_pred CC-------CceEEEE-ECCEEE
Confidence 64 7887666 478877
No 259
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=97.09 E-value=0.0013 Score=60.02 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=35.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.++++|+.|| ..+||+|....+.+.++.+++.. ++++..+..
T Consensus 24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence 5788999999 99999999999999999888754 577766665
No 260
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.02 E-value=0.0018 Score=69.02 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=60.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHH
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~ 462 (547)
.+++.|+.|| +.|||+|+...|.+.++..++. ++.+.-|..+ ..++++.
T Consensus 116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~----------------------------~~~~~~~ 164 (521)
T 1hyu_A 116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG----------------------------TFQNEIT 164 (521)
T ss_dssp CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT----------------------------TCHHHHH
T ss_pred CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech----------------------------hhHHHHH
Confidence 4677889999 9999999999999999887754 5666555443 2467888
Q ss_pred HhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 463 SYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+|++. .+|+.++ +|+.+.. +.. ..+++++.++..
T Consensus 165 ~~~i~------svPt~~i---~g~~~~~--G~~----~~~~l~~~l~~~ 198 (521)
T 1hyu_A 165 ERNVM------GVPAVFV---NGKEFGQ--GRM----TLTEIVAKVDTG 198 (521)
T ss_dssp HTTCC------SSSEEEE---TTEEEEE--SCC----CHHHHHHHHCCS
T ss_pred HhCCC------ccCEEEE---CCEEEec--CCC----CHHHHHHHHhhc
Confidence 99987 5899876 7887744 332 456676666544
No 261
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=96.97 E-value=0.0017 Score=60.93 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=54.6
Q ss_pred CCCCeEEEEE----EeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCC
Q psy224 382 YKGQYVVLFF----YPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK 456 (547)
Q Consensus 382 ~~gk~~ll~f----~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 456 (547)
.++.++|++| | +.||++|...+|.+.++++++.+ ..+++..|.+ |.
T Consensus 19 ~~~~v~v~~~~~~~~-~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~----------------------------~~ 69 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIG-CESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP----------------------------FT 69 (229)
T ss_dssp CCSCEEEEEECCCTT-CGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT----------------------------TT
T ss_pred ccCCeEEEEEccCCC-CcccHHHHHHHHHHHHHHhccCCCCceEEEEecC----------------------------cc
Confidence 3445555555 3 66777888889999999888853 2456655522 34
Q ss_pred ChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCC
Q psy224 457 SMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495 (547)
Q Consensus 457 ~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~ 495 (547)
++++++.|+|. .+|+.++++ +|+....+.|..
T Consensus 70 ~~~l~~~~~v~------~~Ptl~~~~-~~~~~~~~~G~~ 101 (229)
T 2ywm_A 70 HKEETEKYGVD------RVPTIVIEG-DKDYGIRYIGLP 101 (229)
T ss_dssp CHHHHHHTTCC------BSSEEEEES-SSCCCEEEESCC
T ss_pred cHHHHHHcCCC------cCcEEEEEC-CCcccceecCCc
Confidence 57899999998 589999996 567666775654
No 262
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=96.93 E-value=0.0013 Score=64.87 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=40.6
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+|+||||+|+|++|++++|.+|++ +.+.+.+.. ...++++++++.+...+..+
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~~G~i-l~~~~~~~~------------~~~~~~~~~~~~l~~~i~~~ 63 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHASDGTP-LAMAEGGAS------------ALSQGIAKSWQAVLSTLEAA 63 (305)
T ss_dssp CEEEEEEECSSCEEEEEEETTCCE-EEEEEESCC------------CGGGCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCccceEEEEEcCCCCE-EEEEeCCCC------------CcccCHHHHHHHHHHHHHHH
Confidence 499999999999999999999998 766543221 02367888998888777544
No 263
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=96.89 E-value=0.0055 Score=54.78 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=40.6
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACST 426 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~ 426 (547)
.+.+....++++|+.|+ ..+||+|....+.+.++.++|.+. +++++....
T Consensus 19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 45666667899999999 999999999999999999888433 477777655
No 264
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=96.78 E-value=0.0024 Score=49.44 Aligned_cols=36 Identities=11% Similarity=-0.068 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
|+.|+ ++|||+|....+.|.++..+++ ++.+..+..
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi 38 (85)
T 1ego_A 3 TVIFG-RSGCPYCVRAKDLAEKLSNERD--DFQYQYVDI 38 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHHS--SCEEEEECH
T ss_pred EEEEe-CCCCCCHHHHHHHHHHHHhcCC--CceEEEEec
Confidence 67788 9999999999999999887754 677777654
No 265
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=96.74 E-value=0.0015 Score=64.21 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+||||+|+|++|++++|.+|++ +.+.+.++ +.+.+++++++++.+...+..
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~i-~~~~~~~~-----------~~~~~~~~~~~~~~i~~~i~~ 54 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNF-IGEGSSGP-----------GNYHNVGLTRAIENIKEAVKI 54 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSCE-EEEEEESC-----------CCHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCcEEEEEEcCCCCE-EEEEeCCC-----------CCcccCCHHHHHHHHHHHHHH
Confidence 89999999999999999999998 77665443 112357889999988887754
No 266
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=96.67 E-value=0.002 Score=64.66 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
||++|+||||+|+|++|++++|.+|++ +.+.+.+. ....+++++++++.+...+..+
T Consensus 3 ~M~~~~lgiDiGgt~~~~~l~d~~g~i-~~~~~~~~-----------~~~~~~~~~~~~~~i~~~i~~~ 59 (347)
T 2ch5_A 3 FMAAIYGGVEGGGTRSEVLLVSEDGKI-LAEADGLS-----------TNHWLIGTDKCVERINEMVNRA 59 (347)
T ss_dssp SSSCEEEEEEECTTCEEEEEEETTSCE-EEEEEECC-----------CCHHHHCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEcCccceEEEEEeCCCCE-EEEEeCCC-----------CCcccCCHHHHHHHHHHHHHHH
Confidence 334599999999999999999999998 76654422 1123468899999888877654
No 267
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=96.64 E-value=0.0066 Score=57.49 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCCeEEEEEEeC--CCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYPL--DFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~~--~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++++||.|| + +||+ ..|.+.++.++|+. .++.|+-|.+|... ++.+.+
T Consensus 21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g-----------------------~~~~~~ 72 (240)
T 2qc7_A 21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG-----------------------DKLNME 72 (240)
T ss_dssp GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS-----------------------SCCSHH
T ss_pred CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc-----------------------chhhHH
Confidence 3679999999 9 9998 88899999988874 35777777654300 012468
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCc--EEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQN--LRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~--v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|+|..+ .+|+.+++ ++|+ ....+.| .++.+.+++.+++.
T Consensus 73 l~~~~~V~~~----~~PTl~~f-~~G~~~~~~~y~G----~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 73 LSEKYKLDKE----SYPVFYLF-RDGDFENPVPYTG----AVKVGAIQRWLKGQ 117 (240)
T ss_dssp HHHHTTCCGG----GCSEEEEE-ETTCSSCCEECCS----CSCHHHHHHHHHHT
T ss_pred HHHHcCCCCC----CCCEEEEE-eCCCcCcceeecC----CCCHHHHHHHHHHh
Confidence 8899998721 28999999 5777 3344433 23567888877754
No 268
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=96.55 E-value=0.0046 Score=49.95 Aligned_cols=80 Identities=5% Similarity=0.036 Sum_probs=51.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
.++.|+.|+ ++|||+|....+.|.++. .++.+.-|..+.+ .+.++.+.
T Consensus 15 ~~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~--------------------------~~~el~~~ 62 (100)
T 1wjk_A 15 ALPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLP--------------------------ENSTWYER 62 (100)
T ss_dssp CCCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSS--------------------------TTHHHHHH
T ss_pred CCCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCc--------------------------chHHHHHH
Confidence 457788899 999999998888776543 2366666555421 23567778
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
|| . .+|+.+ + +|+.+ ..+.. +.+++.+.|+++
T Consensus 63 ~g-~------~vP~l~-~--~g~~~--~~~g~----~~~~l~~~l~~~ 94 (100)
T 1wjk_A 63 YK-F------DIPVFH-L--NGQFL--MMHRV----NTSKLEKQLRKL 94 (100)
T ss_dssp SS-S------SCSEEE-E--SSSEE--EESSC----CHHHHHHHHHSS
T ss_pred HC-C------CCCEEE-E--CCEEE--EecCC----CHHHHHHHHHHH
Confidence 88 5 479653 4 57765 22333 456676766643
No 269
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=96.53 E-value=0.0032 Score=62.60 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=40.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
|+|+||||+|+|++|++++|.+|++ +.+.+.++ ..+++++++.+...+..+
T Consensus 1 M~~~lgiDiGgt~i~~~l~d~~G~i-~~~~~~~~---------------~~~~~~~~~~i~~~i~~~ 51 (321)
T 3vgl_A 1 MGLTIGVDIGGTKIAAGVVDEEGRI-LSTFKVAT---------------PPTAEGIVDAICAAVAGA 51 (321)
T ss_dssp -CEEEEEEECSSEEEEEEECTTCCB-CCCEEEEC---------------CSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCEEEEEEECCCCCE-EEEEEeeC---------------CCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 76655443 256888988888877654
No 270
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=95.99 E-value=0.0064 Score=60.33 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.9
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+|+||||+|+|++|++++|.+|++ +.+.+.+++. ..+++++++.+...+..
T Consensus 5 ~~~~lgiDiggt~~~~~l~d~~g~i-l~~~~~~~~~-------------~~~~~~~~~~l~~~i~~ 56 (326)
T 2qm1_A 5 DKKIIGIDLGGTTIKFAILTTDGVV-QQKWSIETNI-------------LEDGKHIVPSIIESIRH 56 (326)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCE-EEEEEEECCC-------------TTTTTTHHHHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEEECCCCCE-EEEEEEcCCC-------------CCCHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 7777665521 24555666666655544
No 271
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=95.83 E-value=0.032 Score=56.01 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
++.+|+|+ +.||+.|....+.+.+++++|+.+ +.++.|.++.. ..+.+++.|
T Consensus 136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~--------------------------~~~~~~~~f 187 (361)
T 3uem_A 136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHT--------------------------DNQRILEFF 187 (361)
T ss_dssp CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSG--------------------------GGHHHHHHT
T ss_pred CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChH--------------------------HHHHHHHHc
Confidence 46678888 999999999999999999999764 67777655431 135677889
Q ss_pred CCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHhhh----hcCccccCCcc
Q psy224 465 GVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVA----EHGEVCPAGWK 526 (547)
Q Consensus 465 ~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~----~~~~~~~~~w~ 526 (547)
|+... ..|+..+++.++.. ..+.. .....+.+++.+.++...... ......|..|.
T Consensus 188 gi~~~----~~P~~~~~~~~~~~-~ky~~-~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~ 247 (361)
T 3uem_A 188 GLKKE----ECPAVRLITLEEEM-TKYKP-ESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWD 247 (361)
T ss_dssp TCCTT----TCSEEEEEECC--C-CEECC-SSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTT
T ss_pred CCCcc----CCccEEEEEcCCcc-cccCC-CccccCHHHHHHHHHHHhcCCCcccccCCCCCcccc
Confidence 98721 27999999864432 23311 112346778888877754211 12345566664
No 272
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=95.72 E-value=0.0041 Score=60.50 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=54.0
Q ss_pred eEeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecC
Q psy224 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD 455 (547)
Q Consensus 376 ~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D 455 (547)
.+.+++...+..++.|| ++|||+|+...|.+.++.++++ -|.+|. .+.+ |
T Consensus 189 ~~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l~-------~Vd~d~-------------------~d~~---~ 238 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-------YVECSP-------------------NGPG---T 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-------EEESCS-------------------SCSS---S
T ss_pred HHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHcC-------EEEEee-------------------cCch---h
Confidence 34555543333478999 9999999999999998865431 122221 0000 3
Q ss_pred CChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy224 456 KSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLV 508 (547)
Q Consensus 456 ~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l 508 (547)
.+++++++|++. .+|+.++ +|+. +.|.. +.+++.+.+
T Consensus 239 ~~~~la~~~gI~------~vPT~~i---~G~~---~~G~~----~~~~L~~~l 275 (291)
T 3kp9_A 239 PQAQECTEAGIT------SYPTWII---NGRT---YTGVR----SLEALAVAS 275 (291)
T ss_dssp CCCHHHHTTTCC------STTEEEE---TTEE---EESCC----CHHHHHHHT
T ss_pred hHHHHHHHcCCc------ccCeEEE---CCEE---ecCCC----CHHHHHHHH
Confidence 367899999998 5899554 6763 43433 455655553
No 273
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=95.45 E-value=0.079 Score=50.26 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCeEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhh--CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChH
Q psy224 383 KGQYVVLFFYP-LDFTFVCPTEIIAFSDRAEEFKK--INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS 459 (547)
Q Consensus 383 ~gk~~ll~f~~-~~~cp~C~~~~~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 459 (547)
.++++||.||- ++||+ ..|.+.++.++|.. .++.|+-|.++...+ ..+.+
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~-----------------------~~n~~ 84 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------------LENKA 84 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------------CTTHH
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc-----------------------cccHH
Confidence 45788888885 68887 88899999998864 457777776654100 01467
Q ss_pred HHHHhCCcccCCCcceeEEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 460 IARSYGVLNEETGIPYRGLFIIDDKQNL--RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 460 ~~~~~~v~~~~~g~~~p~~~lid~~G~v--~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
+++.|+|..+ .+||.+++. |++ ...+ ...-.++.+++.+.+++.
T Consensus 85 la~~~~V~~~----~~PTl~~F~--G~~~~~~~y--~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 85 LGDRYKVDDK----NFPSIFLFK--GNADEYVQL--PSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp HHHHTTCCTT----SCCEEEEES--SSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCcC----CCCeEEEEe--CCcCcceee--cccCCCCHHHHHHHHHHh
Confidence 8899998721 289999995 773 2222 011234677888887754
No 274
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=95.30 E-value=0.024 Score=55.43 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=37.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
+|+||||+|+|++|++++|.+|++ +.+.+.+++ ..+++++++.+...+.
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~i~~~~~ 52 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGEI-ILTKSAEIS--------------GSDGDQILAEMKVFLA 52 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCE-EEEEEEECS--------------TTCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCeEEEEEECCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHh
Confidence 589999999999999999999998 777665541 1234667776666553
No 275
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=95.16 E-value=0.028 Score=55.88 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=40.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
|+||||+|+|++|++++|.+|++ +.+.+.+++ ..+++++++.+...+..+
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 74 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLER-VATERVPTP--------------TDDYPLLLETIAGLVAKY 74 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE-EEEEEEECC--------------TTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCEEEEEEEeCCCcE-EEEEEecCC--------------CCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999998 777665542 236888888888777654
No 276
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=95.12 E-value=0.018 Score=56.52 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=36.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
||+||||+|+|++|++++|.+ ++ +...+.+++ ..+++++++.+...+..+
T Consensus 1 M~~lgiDiGgt~i~~~l~d~~-~~-l~~~~~~~~--------------~~~~~~~~~~i~~~i~~~ 50 (302)
T 3vov_A 1 MKVVGLDLGGTKIAAGVFDGK-RL-LSKVVVPTP--------------KEGGERVAEALAEAAERA 50 (302)
T ss_dssp CCEEEEEECSSEEEEEEECSS-SB-SCCEEEECC--------------SSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCEEEEEEEeCC-Cc-EEEEEEcCC--------------CCChHHHHHHHHHHHHHH
Confidence 379999999999999999988 56 555554442 223367777777776544
No 277
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=95.11 E-value=0.058 Score=51.03 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=45.4
Q ss_pred CCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHhh-CC---cEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 384 GQYVVLFFYPLDF--TFVCPTEIIAFSDRAEEFKK-IN---TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 384 gk~~ll~f~~~~~--cp~C~~~~~~l~~~~~~~~~-~~---~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
+++++|.|| +.| |++|....+.+.++.+.+.. +| +.++-+. .|.+
T Consensus 25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd----------------------------~d~~ 75 (243)
T 2hls_A 25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYY----------------------------RESD 75 (243)
T ss_dssp CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEE----------------------------TTTT
T ss_pred CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEec----------------------------CCcC
Confidence 468899999 999 99999998888888876421 11 3333222 2345
Q ss_pred hHHHHHhCCcccCCCcceeEEEEE
Q psy224 458 MSIARSYGVLNEETGIPYRGLFII 481 (547)
Q Consensus 458 ~~~~~~~~v~~~~~g~~~p~~~li 481 (547)
+++++.|||. .+|+..++
T Consensus 76 ~~~~~~~gv~------~~Pt~~i~ 93 (243)
T 2hls_A 76 SDKFSEFKVE------RVPTVAFL 93 (243)
T ss_dssp HHHHHHTTCC------SSSEEEET
T ss_pred HHHHHhcCCC------cCCEEEEE
Confidence 7888999998 48998888
No 278
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=95.08 E-value=0.031 Score=55.86 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=38.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.++ .++++++++.+.+.+..+
T Consensus 30 ~~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~---------------~~~~~~~~~~i~~~i~~~ 79 (343)
T 2yhw_A 30 LSALAVDLGGTNLRVAIVSMKGEI-VKKYTQFN---------------PKTYEERINLILQMCVEA 79 (343)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCE-EEEEEEEC---------------CSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCCEEEEEEECCCCcE-EEEEEEcC---------------CCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 76655433 135777777777766543
No 279
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.88 E-value=0.041 Score=55.87 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=41.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.+++ .+++++++++.+...+..+
T Consensus 87 ~~~lGIDiGgt~i~~~l~d~~G~v-l~~~~~~~~-------------~~~~~~~~~~~l~~~i~~~ 138 (380)
T 2hoe_A 87 AYVLGIEVTRDEIAACLIDASMNI-LAHEAHPLP-------------SQSDREETLNVMYRIIDRA 138 (380)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCEEEEEEECCCCCE-EEEEEEccC-------------CCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 777665552 1357888888887777654
No 280
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=94.87 E-value=0.037 Score=54.33 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
.+++||||+|+|++|++++|.+|++ +.+.+.++ .+++++++.+...+.
T Consensus 2 ~~~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~t----------------~~~~~~l~~i~~~~~ 49 (302)
T 3epq_A 2 NAMLGGIEAGGTXFVCAVGREDGTI-IDRIEFPT----------------XMPDETIEXVIQYFS 49 (302)
T ss_dssp -CCEEEEEECSSEEEEEEECTTSCE-EEEEEEEC----------------CCHHHHHHHHHHHHT
T ss_pred CcEEEEEEECcceeEEEEEECCCcE-EEEEEecC----------------CChHHHHHHHHHHhc
Confidence 4689999999999999999999998 77655443 135677777666554
No 281
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=94.81 E-value=0.044 Score=53.24 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.7
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
++||||+|.|++|++++|.+|++ +.+.+.+++ ...+++++++.+.+.+..+
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~i-l~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 52 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQI-RDRRELPTP-------------ASQTPEALRDALSALVSPL 52 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCE-EEEEEEECC-------------SSCCHHHHHHHHHHHHTTT
T ss_pred eEEEEEeCCCEEEEEEECCCCCE-EEEEEecCC-------------CCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 777665542 1235788888888887655
No 282
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=94.78 E-value=0.8 Score=43.79 Aligned_cols=123 Identities=18% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCchhhhhhccccc-C-CCcEEEeccchhhhhhcc-----cccccccchhHHHHHhHHHHHHHHhCCCCchhHHHHHHHh
Q psy224 169 LGDLQCSVLATLQY-H-SDAIVNISTSAQIAFIDE-----MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQIWAKLIN 241 (547)
Q Consensus 169 ~~D~~aa~~g~g~~-~-~~~~is~GTs~~~~~~~~-----~~~~~~gg~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~ 241 (547)
+.|-.++++|+-.. + .-+++..||...+-++++ +|...+|-... .+.+.+
T Consensus 107 G~DR~~~~vaA~~~~~~~~iVVD~GTAtT~d~v~~~g~~lGG~I~PGi~l~-----------------------~~AL~~ 163 (268)
T 2h3g_X 107 GADRIVNAVAGIHLYGSPLIIVDFGTATTYCYINEEKHYMGGVITPGIMIS-----------------------AEALYS 163 (268)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEESSEEEEEEECTTSEEEEEEEEECHHHH-----------------------HHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCceEEEEECCCCcEEEEEECccHHHH-----------------------HHHHHH
Confidence 45888888887553 3 458999999999987765 34444442211 122211
Q ss_pred ccCcccccccCCCCeEEecCccCcccCCCCCceEEecccCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEee
Q psy224 242 ASDPINHITRHHSTLRVTPTLLGDRHVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGI 320 (547)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~P~~~G~r~p~~~~~~~~gl~~~~~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~ 320 (547)
. .++. |.+.-++ | ... +.. + |...|-..++-|++..+..++++ .-++.+ .-+|+++
T Consensus 164 ~---Ta~L----------p~v~~~~-p----~~~--~g~-n-T~~ai~sGi~~g~~g~i~~~i~~-~~~e~~~~~~vi~T 220 (268)
T 2h3g_X 164 R---AAKL----------PRIEITK-P----SSV--VGK-N-TVSAMQSGILYGYVGQVEGIVKR-MKEEAKQEPKVIAT 220 (268)
T ss_dssp --------------------CCCCC-C----SCS--SCS-S-HHHHHHHHHHHHHHHHHHHHHHH-HHHHCSSCCEEEEE
T ss_pred H---HhcC----------CCccccC-C----CCC--CCc-C-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 1 1111 2211111 1 111 112 2 78889999999999999888885 233455 4589999
Q ss_pred CCchhhcHHHHHHHHHHhCCceEE
Q psy224 321 GSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 321 GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
||. .++++..+..+..+
T Consensus 221 GG~-------a~~l~~~~~~~~~~ 237 (268)
T 2h3g_X 221 GGL-------AKLISEESNVIDVV 237 (268)
T ss_dssp STT-------HHHHHHHCSSCSEE
T ss_pred CCC-------HHHHHhhCCCCCEE
Confidence 996 55667666654444
No 283
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=94.67 E-value=0.01 Score=58.60 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=27.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
.++||||+|+|++|++++|.+|++ +.+.+.++
T Consensus 7 ~~~lgiDiGgt~i~~~l~d~~G~i-l~~~~~~~ 38 (310)
T 3htv_A 7 NVVAGVDMGATHIRFCLRTAEGET-LHCEKKRT 38 (310)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCE-EEEEEEEH
T ss_pred CEEEEEEeCCCEEEEEEECCCCCE-EEEEEecC
Confidence 489999999999999999999998 77665544
No 284
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=94.60 E-value=0.028 Score=57.66 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=38.7
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|+||||+|+|++|++++|.+|++ +.+.+.+++ +++++++++.+...+..+
T Consensus 84 ~~~~lgiDiG~t~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~l~~~i~~~ 135 (406)
T 1z6r_A 84 AWHYLSLRISRGEIFLALRDLSSKL-VVEESQELA--------------LKDDLPLLDRIISHIDQF 135 (406)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCE-EEEEEEECC--------------SSCSSCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCEEEEEEEcCCCCE-EEEEEecCC--------------CCCHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 776655541 234556677666665543
No 285
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.38 E-value=0.052 Score=56.10 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.|+||||+|+|++|++++|.+|++ +.+.+.+++ .++++++++.+...+..+
T Consensus 108 ~~~lGIDiGgt~i~~~l~d~~G~i-l~~~~~~~~--------------~~~~~~~~~~l~~~i~~~ 158 (429)
T 1z05_A 108 WQFLSMRLGRGYLTIALHELGGEV-LIDTKIDIH--------------EIDQDDVLARLLFEIEEF 158 (429)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCE-EEEEEEECC--------------CCBHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEECCCCCE-EEEEEEcCC--------------CCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 776655541 236888888887776554
No 286
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.35 E-value=0.27 Score=43.95 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKS 457 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~ 457 (547)
.-.+|+++|+++ ..+|+.|..-...+ .++.+-++ .++.+++.+.+..+..+.+...... .+ .
T Consensus 52 k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~e~~~~~~~~~~~-----~~--------g 116 (178)
T 2ec4_A 52 ARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKDSNRARFLTMCNR-----HF--------G 116 (178)
T ss_dssp TTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSHHHHHHHHHHHHH-----HT--------C
T ss_pred hhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCchhhhhhhhhhhh-----hh--------H
Confidence 335799999999 99999987654332 12222222 3788889888887655544433210 00 1
Q ss_pred hHHH---HHhCCcccCCCcceeEEEEEcCCC---cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 458 MSIA---RSYGVLNEETGIPYRGLFIIDDKQ---NLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 458 ~~~~---~~~~v~~~~~g~~~p~~~lid~~G---~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++ +.|++. .+|...+|++.| +++....|.. +.+++++.|++.
T Consensus 117 ~~~a~~~~~~~~~------~~P~l~ii~~~~~~~~vl~~~~G~~----~~~~ll~~L~~~ 166 (178)
T 2ec4_A 117 SVVAQTIRTQKTD------QFPLFLIIMGKRSSNEVLNVIQGNT----TVDELMMRLMAA 166 (178)
T ss_dssp HHHHHHHHHSCST------TCSEEEEECCCSSCCCEEEEECSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC------CCCeEEEEEcCCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 2333 447776 489999998764 7788887665 467777776654
No 287
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=94.26 E-value=0.025 Score=56.07 Aligned_cols=51 Identities=27% Similarity=0.243 Sum_probs=37.4
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
..|+||||+|+|++|++++|.+|++ +...+.+++ ...+++++++.+.+.+.
T Consensus 18 ~~~~lgidiggt~i~~~l~d~~g~i-l~~~~~~~~-------------~~~~~~~~~~~i~~~i~ 68 (321)
T 3r8e_A 18 QGMILGIDVGGTSVKFGLVTPEGEI-QNATRFMTA-------------DWVNGIGFVESMKLEIG 68 (321)
T ss_dssp -CCEEEEECCSSEEEEEEECTTCCE-EEEEEEEHH-------------HHHTTTCHHHHHHHHHH
T ss_pred CcEEEEEEECCCEEEEEEEcCCCcE-EEEEEEeCC-------------CCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999998 777766552 12345556666555544
No 288
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=94.04 E-value=0.066 Score=46.42 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred EeccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEE
Q psy224 377 IKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIAC 424 (547)
Q Consensus 377 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~i 424 (547)
|.+..-.++++|+.|. -.+||+|....+.+.++ . +++++.+
T Consensus 7 i~~~~~~a~~~vv~f~-D~~Cp~C~~~~~~l~~l----~--~v~v~~~ 47 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFS-DPDCPFCKRLEHEFEKM----T--DVTVYSF 47 (147)
T ss_dssp EEEEETTCCEEEEEEE-CTTCHHHHHHHHHHTTC----C--SEEEEEE
T ss_pred eeeecCCCCEEEEEEE-CCCChhHHHHHHHHhhc----C--ceEEEEE
Confidence 4444445789999999 99999999999988654 2 4555544
No 289
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=94.01 E-value=0.044 Score=53.36 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=35.1
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHh
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCIL 67 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~ 67 (547)
++||||+|+|++|++++| +|++ +.+.+.+.. . ....+++.+++.+...+.
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~i-l~~~~~~~~---------~--~~~~~~~~~~~~i~~~i~ 50 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGKS-LGRFQTSGI---------N--PFQQDRNEIDTALRSEVL 50 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTEE-EEEEEEECC---------C--TTTSCHHHHHHHHTTTTH
T ss_pred CEEEEEeCccceEEEEEe-CCeE-EEEEECCCC---------C--cccCCHHHHHHHHHHHHH
Confidence 379999999999999999 9987 766654321 0 113467777776665554
No 290
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=93.99 E-value=0.028 Score=51.23 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=36.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
.++++|+.|| ..|||+|....|.+.++.+++.+ ++.+.-+..+
T Consensus 23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 4789999999 99999999999999999888876 5777777664
No 291
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=93.93 E-value=0.073 Score=51.71 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=38.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|++||||+|.|++|++++|.+|++ +.+.+.+. + .+++++.+.+...+..
T Consensus 4 m~~lgidiggt~i~~~l~d~~g~i-l~~~~~~~-----------~----~~~~~~~~~i~~~i~~ 52 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGKI-LDKTSIST-----------P----ENLEDLLAWLDQRLSE 52 (292)
T ss_dssp CCEEEEEEETTEEEEEEECTTCCE-EEEEEECC-----------C----SSHHHHHHHHHHHHTT
T ss_pred cEEEEEEECCCEEEEEEECCCCCE-EEEEEEeC-----------C----CCHHHHHHHHHHHHHh
Confidence 368999999999999999999998 76654333 1 4577888888777653
No 292
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.59 E-value=0.17 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ ++|||+|....+.|.++
T Consensus 29 vvvf~-~~~Cp~C~~~~~~L~~~ 50 (130)
T 2cq9_A 29 VVIFS-KTSCSYCTMAKKLFHDM 50 (130)
T ss_dssp EEEEE-CSSCSHHHHHHHHHHHH
T ss_pred EEEEE-cCCChHHHHHHHHHHHc
Confidence 34488 99999999887776654
No 293
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=93.48 E-value=0.13 Score=51.72 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=39.9
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccc-ccccccCCCCcCCCCCCccccCHHHHHHHHHH---HHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSE-SKDTQANIPSAHDSNPGAHEQNVRKIVSTLHN---CILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~-~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~---~i~~~ 69 (547)
..++||||+|.|++|++++| +|++ +.+. +.+++ .. +++++++.+.+ .+..+
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d-~G~i-l~~~~~~~~~-------------~~-~~~~~l~~i~~~~~~i~~~ 62 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQ-GGKE-IADPVVLPAC-------------AD-CLDKCLGNLVEGFKAIQAG 62 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEE-TTEE-CSCCEEEECC-------------TT-CHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECcceEEEEEEE-CCEE-EEEEEEEECC-------------CC-CHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999 9987 7665 54441 12 78888888888 66554
No 294
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=93.32 E-value=0.07 Score=40.50 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|+ ++|||+|....+.|.+ .++.+..+..+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR 35 (81)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence 56788 9999999988776654 356665665553
No 295
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=93.18 E-value=0.11 Score=42.54 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHH
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
.|+.|+ ++|||+|....+.|.+
T Consensus 20 ~vv~f~-~~~Cp~C~~~~~~L~~ 41 (114)
T 2hze_A 20 KVTIFV-KYTCPFCRNALDILNK 41 (114)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHTT
T ss_pred CEEEEE-eCCChhHHHHHHHHHH
Confidence 467788 9999999977665543
No 296
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=93.16 E-value=0.15 Score=50.43 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
.++||||+|.|++|++++|.+|++ +.+.+.+.+ . .+++++++.+...+..
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~i-l~~~~~~~~---------~-----~~~~~~~~~i~~~i~~ 73 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRRL-QWEKRVPTP---------H-----TSYSAFLDAVCELVEE 73 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCE-EEEEEEECC---------C-----SCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCEEEEEEEeCCCCE-EEEEEecCC---------C-----CCHHHHHHHHHHHHHH
Confidence 579999999999999999999998 776655541 1 1466777777776654
No 297
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=93.10 E-value=0.016 Score=53.16 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d~ 428 (547)
.++++||.|| +.|||+|....|.+ .++.+++.+ ++.+.-+..+.
T Consensus 112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSS
T ss_pred CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCc
Confidence 4689999999 99999999999988 888877754 67777777653
No 298
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=92.82 E-value=0.17 Score=48.48 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=36.2
Q ss_pred ceEEEEEeCCceeEEEEEecC-CCeeecc-cccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDAN-TREELSS-ESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~-g~~~l~~-~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+|+||||+|+|++|++++|.+ |++ +.. .+.+++ ...+++.+++.+.+.+..+
T Consensus 12 ~~~lgidiggt~i~~~l~dl~~g~i-~~~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~ 65 (267)
T 1woq_A 12 APLIGIDIGGTGIKGGIVDLKKGKL-LGERFRVPTP-------------QPATPESVAEAVALVVAEL 65 (267)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEE-EEEEEEEECC-------------SSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEEECCCCeE-EEEEEecCCC-------------ccCCHHHHHHHHHHHHHHH
Confidence 579999999999999999987 565 532 232321 1245777777777776554
No 299
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=92.74 E-value=0.38 Score=37.82 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. .+|||+|...-.-|. ++|+.+--+..+.
T Consensus 6 I~vYs-~~~Cp~C~~aK~~L~-------~~gi~y~~idi~~ 38 (92)
T 2lqo_A 6 LTIYT-TSWCGYCLRLKTALT-------ANRIAYDEVDIEH 38 (92)
T ss_dssp EEEEE-CTTCSSHHHHHHHHH-------HTTCCCEEEETTT
T ss_pred EEEEc-CCCCHhHHHHHHHHH-------hcCCceEEEEcCC
Confidence 56677 999999987655443 3466655555543
No 300
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=92.68 E-value=0.11 Score=52.40 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=38.2
Q ss_pred CceEEEEEeCCceeEEEEEec----CCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDA----NTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~----~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
|+++||||+|+|++|++++|. +|++ +...+. ++ . .+++.+.+.+...+..+..
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~i-l~~~~~-~~---------~-----~~~~~~~~~i~~~i~~~~~ 84 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHA-CVTRYS-MK---------R-----KDITEIIEFFNEIIELMPA 84 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEE-EEEEEE-CT---------T-----CBGGGHHHHHHHHHHHSCH
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccE-EEEeee-cC---------C-----CCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999998 8887 654431 11 1 3456677777777765543
No 301
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=92.66 E-value=0.34 Score=46.81 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHH---hCCceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERI---YGLQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~---l~~~v~~~~~~~~~~a 353 (547)
.++++++++++.+++..+...... ..+..++++|+.+||-+++|+.+++.+.+. .+..+.+++.++...|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~-~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gA 279 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAIT-VAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGA 279 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHH
Confidence 389999999999998888776542 233466789999999338999999999997 5888988888887554
No 302
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=92.46 E-value=0.18 Score=52.24 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=37.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|||||+|+|++|+++++.+|+.-....+..++. | . .....+++++++.+..+|..+
T Consensus 61 G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~i--p-----~-~~~~~~~~~lfd~Ia~~i~~~ 118 (457)
T 2yhx_A 61 GSFLAIVMGGGDLEVILISLAGRQESSIXASRSLA--A-----A-MSTTAIPSDLWGNXAXSNAAF 118 (457)
T ss_dssp EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECC--T-----T-TTSCSCTHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEc--C-----C-ccCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999987511111222221 1 1 112336778888887777654
No 303
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=92.38 E-value=0.097 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRA 411 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~ 411 (547)
|+.|+ ++|||+|....+.|.++.
T Consensus 14 v~~f~-~~~C~~C~~~~~~L~~~~ 36 (105)
T 1kte_A 14 VVVFI-KPTCPFCRKTQELLSQLP 36 (105)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHSC
T ss_pred EEEEE-cCCCHhHHHHHHHHHHcC
Confidence 66788 999999998877776543
No 304
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=92.20 E-value=0.12 Score=38.35 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|+ ++|||+|....+.|.++ ++.+..+..+
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~-------~i~~~~~di~ 34 (75)
T 1r7h_A 3 ITLYT-KPACVQCTATKKALDRA-------GLAYNTVDIS 34 (75)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred EEEEe-CCCChHHHHHHHHHHHc-------CCCcEEEECC
Confidence 56678 99999999887776643 5555555554
No 305
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=92.17 E-value=0.2 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ ++|||+|....+.|.++
T Consensus 51 Vvvf~-~~~Cp~C~~~k~~L~~~ 72 (146)
T 2ht9_A 51 VVIFS-KTSCSYCTMAKKLFHDM 72 (146)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHHc
Confidence 44488 99999999887777654
No 306
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=92.17 E-value=0.22 Score=41.20 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=12.8
Q ss_pred EEEEEeCCCCCCcHHH
Q psy224 388 VLFFYPLDFTFVCPTE 403 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~ 403 (547)
|+.|+ ++|||+|...
T Consensus 27 Vvvf~-~~~Cp~C~~a 41 (118)
T 3c1r_A 27 IFVAS-KTYCPYCHAA 41 (118)
T ss_dssp EEEEE-CSSCHHHHHH
T ss_pred EEEEE-cCCCcCHHHH
Confidence 56688 9999999986
No 307
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=92.13 E-value=0.19 Score=46.94 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=34.8
Q ss_pred CC-CceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 1 M~-~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|+ +.++||||+|.|++| ++|.+|++ . .+.+++ ...+++.+.+.+.+.+..
T Consensus 2 m~~~~~~lgiDIGGT~i~--~~d~~g~~-~--~~~~t~-------------~~~~~~~~~~~i~~~i~~ 52 (226)
T 3lm2_A 2 MAEDQTVLAIDIGGSHVK--IGLSTDGE-E--RKVESG-------------KTMTGPEMVAAVTAMAKD 52 (226)
T ss_dssp CGGGCCEEEEEECSSEEE--EEETTTCC-E--EEEECC-------------TTCCHHHHHHHHHHHTTT
T ss_pred CCcCCEEEEEEECCCEEE--EEECCCCE-E--EEEECC-------------CCCCHHHHHHHHHHHHHh
Confidence 54 468999999999999 57888865 2 223321 245678888888776643
No 308
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=92.03 E-value=0.065 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.2
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESK 34 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~ 34 (547)
++||||+|+|++|++++| +|++ +.+.+.
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~i-l~~~~~ 28 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGAV-IKRLGT 28 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSSE-EEEEEE
T ss_pred CEEEEEeccccEEEEEEc-CCeE-EEEEEC
Confidence 479999999999999999 9998 766554
No 309
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=91.60 E-value=0.13 Score=51.15 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCceEEEEEeCCceeEEEEEec-CCCeeecccc
Q psy224 2 SSQVVLGIDIGTTSVKVCLIDA-NTREELSSES 33 (547)
Q Consensus 2 ~~~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~ 33 (547)
+|.|+||||+|.|++|++++|. +|++ +...+
T Consensus 12 ~~~~~lgiDiGGT~i~~~l~dl~~g~i-~~~~~ 43 (332)
T 1sz2_A 12 STKYALVGDVGGTNARLALCDIASGEI-SQAKT 43 (332)
T ss_dssp --CEEEEEEEETTEEEEEEEETTTCCE-EEEEE
T ss_pred CCCEEEEEEechhheEEEEEECCCCcE-EEEEE
Confidence 4679999999999999999994 7887 65443
No 310
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=91.56 E-value=0.45 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
|..|+ ++|||+|......|.++
T Consensus 14 v~ly~-~~~Cp~C~~~~~~L~~~ 35 (92)
T 3ic4_A 14 VLMYG-LSTCPHCKRTLEFLKRE 35 (92)
T ss_dssp SEEEE-CTTCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 56677 99999999877666543
No 311
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=91.51 E-value=0.33 Score=52.04 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=28.1
Q ss_pred ceEEEEEeCCceeEEEEEec-CCCeeeccccccccc
Q psy224 4 QVVLGIDIGTTSVKVCLIDA-NTREELSSESKDTQA 38 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~-~g~~~l~~~~~~~~~ 38 (547)
.|=++||||||++.+.|+|. +|++ +++.+...+.
T Consensus 206 ~~GlAvDiGTTtv~~~LvdL~tG~~-l~~~~~~NpQ 240 (631)
T 3zyy_X 206 VFGLAIDIGTTTVVVQLVDLVSGKV-LGTKGNYNKQ 240 (631)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCE-EEEEEEECGG
T ss_pred ceEEEEEecccceeEEEEECCCCCE-EEeecccCCC
Confidence 46799999999999999995 6877 8887766643
No 312
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=91.51 E-value=0.29 Score=46.36 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~ 323 (547)
|...|-..++-|++..+...++++ -++...-+|+++||.
T Consensus 182 T~~ai~sGi~~g~~g~i~~~i~~~-~~~~~~~~vi~TGG~ 220 (249)
T 3bex_A 182 TEENIRLGVVNGSVYALEGIIGRI-KEVYGDLPVVLTGGQ 220 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCEEEEECCC
Confidence 788888899999999988888751 233434579999996
No 313
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=91.28 E-value=0.55 Score=46.78 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC-CceEEec
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQ 346 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~ 346 (547)
.+++++.+-+.|-+|.++.+.++. +.. ..++|+++||| ++|+.+++.++..+. .+|...+
T Consensus 256 ls~~Dv~ATLt~~TA~sIa~~~~~--~~~-~~~~v~vcGGG-a~N~~Lm~~L~~~l~~~~v~~~d 316 (371)
T 3qbx_A 256 LPAADIQATLLELSARSISESLLD--AQP-DCEEVLVCGGG-AFNTALMKRLAMLMPEARVASTD 316 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH--HCT-TCCEEEEESGG-GGCHHHHHHHHHHCTTSEEEEGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--ccC-CCceEEEECCc-cCcHHHHHHHHHhCCCCEEeCHH
Confidence 479999999999999998887763 322 36799999999 999999999999884 5565543
No 314
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=91.00 E-value=0.28 Score=48.88 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC------CceEEecchhhhhh
Q psy224 283 LGVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG------LQLIVEQDQAMRDA 353 (547)
Q Consensus 283 ~~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~------~~v~~~~~~~~~~a 353 (547)
.++++++++++.+|+..+.+..-. ..+..++++|+++||-+++|+..++.++..++ .++..++.++...|
T Consensus 276 ~~~eDIa~gll~sVa~~I~~lA~l-~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GA 351 (360)
T 2i7n_A 276 ISKEDLARATLVTITNNIGSIARM-CALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 351 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHH
Confidence 479999999999999998887541 22345678999999933999999999999985 68888888776554
No 315
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=90.85 E-value=0.51 Score=47.02 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEE
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIV 344 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~ 344 (547)
+++++.+-+.|-.|.++.+.++. +. +..+|+++||| ++|+.+++.++..+ +.+|..
T Consensus 264 ~~~Dv~ATLt~~TA~sIa~~~~~--~~--~~~~v~vcGGG-a~N~~Lm~~L~~~l~~~~v~~ 320 (370)
T 3cqy_A 264 NEEDIQSTLLDLTCHSIAQDILK--LA--QEGELFVCGGG-AFNAELMQRLAALLPGYRIDT 320 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--HC--SSEEEEEESGG-GGCHHHHHHHHHHCTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cC--CCCEEEEECCC-cCCHHHHHHHHHhCCCCeeee
Confidence 68999999999999999998873 42 45699999999 99999999999988 445543
No 316
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=90.60 E-value=0.42 Score=49.46 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=36.1
Q ss_pred ceEEEEEeCCceeEEEEEecCC-Ce--eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT-RE--ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g-~~--~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
..|||||+|+|++|+++++.+| +- .+...+.+.+. .....+.+++++-+..+|..+
T Consensus 68 G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~----------~~~~~~~~~lfd~Ia~~i~~~ 126 (451)
T 1bdg_A 68 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPA----------EKMSGSGTELFKYIAETLADF 126 (451)
T ss_dssp EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCT----------TTTTSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCC----------cccCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999988 51 01122222211 112346677887777776654
No 317
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=90.46 E-value=0.42 Score=45.71 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhh--cC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHR--SG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~--~g-~~~I~~~GG~ 323 (547)
|...|-..++-|.+..+...+++ .-++ .+ .-+|+++||.
T Consensus 186 T~~ai~sGi~~g~~g~i~~~i~~-~~~~~~~~~~~~vi~TGG~ 227 (266)
T 3djc_A 186 TIESIQSGVYYGVLGACKELIQR-IHHEAFNGDQILILATGGF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTTTCCEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCEEEEECCC
Confidence 78889999999999999998885 2334 45 4589999996
No 318
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=89.88 E-value=0.22 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.5
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
|+++||||+|+|++|++++|.+ ++ +...+.++
T Consensus 1 m~~vlgidiGgt~ik~al~d~~-~i-l~~~~~~~ 32 (381)
T 1saz_A 1 MFRILTINPGSTSTKLSIFEDE-RM-VKMQNFSH 32 (381)
T ss_dssp CCEEEEEEECSSEEEEEEEETT-EE-EEEEEEEC
T ss_pred CCeEEEEECCccceeEEEEecc-hh-eeeeeccc
Confidence 3589999999999999999975 66 77766655
No 319
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=89.76 E-value=0.072 Score=48.23 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~d 427 (547)
.++++|+.|| ..|||+|....|.+ .++.+++.+ +++++-+...
T Consensus 13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 58 (189)
T 3l9v_A 13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS 58 (189)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence 4588999999 99999999999986 466665654 5777777654
No 320
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=89.73 E-value=0.11 Score=46.74 Aligned_cols=39 Identities=13% Similarity=-0.065 Sum_probs=32.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
+|++|+.|| ..|||+|....|.+.++.+++ ++.+.-+..
T Consensus 22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~ 60 (185)
T 3feu_A 22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI 60 (185)
T ss_dssp CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence 689999999 999999999999999999988 455555544
No 321
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=89.16 E-value=0.29 Score=39.22 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
..|+.|+ ++|||+|....+.|.++
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~ 45 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDL 45 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHH
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHc
Confidence 3466788 99999999988777654
No 322
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=88.66 E-value=0.93 Score=33.94 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=16.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
|+.|+ .+|||.|....+.|.+
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~ 23 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSS 23 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHH
Confidence 56677 9999999987766654
No 323
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=88.59 E-value=0.71 Score=35.53 Aligned_cols=32 Identities=3% Similarity=0.097 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|+ ++|||+|....+.|.+. ++.+..+..+
T Consensus 8 v~~y~-~~~C~~C~~~~~~L~~~-------~i~~~~vdv~ 39 (89)
T 2klx_A 8 IILYT-RPNCPYCKRARDLLDKK-------GVKYTDIDAS 39 (89)
T ss_dssp EEEES-CSCCTTTHHHHHHHHHH-------TCCEEEECSC
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence 56677 99999999877666542 4555555554
No 324
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=88.59 E-value=1.6 Score=40.77 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=40.9
Q ss_pred CcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhHh
Q psy224 447 DMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQF 513 (547)
Q Consensus 447 ~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 513 (547)
.+.++...+.+.++++.|||. ..|+.++++++|++...... . ..-+.+-..|+.+.-
T Consensus 184 ~i~v~~~~~~~~~l~~~f~v~------~~Pslvl~~~~g~~~~~~~~-~---~~r~~~~~~l~~~~~ 240 (244)
T 3q6o_A 184 GVAVRRVLNTEANVVRKFGVT------DFPSCYLLFRNGSVSRVPVL-M---ESRSFYTAYLQRLSG 240 (244)
T ss_dssp TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECCCS-S---SSHHHHHHHHHTC--
T ss_pred ceEEEEEeCchHHHHHHcCCC------CCCeEEEEeCCCCeEeeccc-c---ccHHHHHHHHHhCCC
Confidence 667787778889999999998 48999999999999977721 1 123444455665553
No 325
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=88.47 E-value=0.85 Score=36.48 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=15.6
Q ss_pred EEEEEeC-----CCCCCcHHHHHHHHHH
Q psy224 388 VLFFYPL-----DFTFVCPTEIIAFSDR 410 (547)
Q Consensus 388 ll~f~~~-----~~cp~C~~~~~~l~~~ 410 (547)
|+.|+ . +|||+|....+.|.++
T Consensus 19 vvvf~-~g~~~~~~C~~C~~~~~~L~~~ 45 (105)
T 2yan_A 19 VMLFM-KGNKQEAKCGFSKQILEILNST 45 (105)
T ss_dssp EEEEE-SBCSSSBCTTHHHHHHHHHHHH
T ss_pred EEEEE-ecCCCCCCCccHHHHHHHHHHC
Confidence 33466 6 9999999877766543
No 326
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=87.57 E-value=1.1 Score=44.47 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
.++++.+++.++++-.+...+.. ..++.+.++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 221 ~~~diAasfq~~l~~~l~~~~~~-a~~~~g~~~vvlsGGV-a~N~~L~~~L~~~l~~~g~~v~~p~~ 285 (334)
T 3eno_A 221 AIEDISYSIQETAFAMLVEVLER-ALYVSGKDEILMAGGV-ALNRRLRDMVTNMAREAGIRSYLTDR 285 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEESSG-GGCHHHHHHHHHHHHHHTSEEECCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEEcCCH-HHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 68899999999999888887775 4566788999999996 99999999999887 677777654
No 327
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=87.51 E-value=0.37 Score=54.60 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=37.9
Q ss_pred ceEEEEEeCCceeEEEEEecCCC----eeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR----EELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~----~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
-.|||||+|+|++|++++|.+|+ +.+...+.+++. .....+.+++++.+..+|..+
T Consensus 78 G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~----------~~~~~~~~~lf~~Ia~~i~~~ 137 (917)
T 1cza_N 78 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPE----------NIVHGSGSQLFDHVAECLGDF 137 (917)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCH----------HHHSSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCc----------ccccCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999875 212333333311 012346788888888887664
No 328
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=87.35 E-value=0.46 Score=48.71 Aligned_cols=62 Identities=5% Similarity=0.034 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLH------RSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~------~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~ 346 (547)
...+++++.+|-+.-.+++.++...+. ..-+..|+++||+ ++-+.+.+++++.++.|+.+..
T Consensus 293 ~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~-s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 293 KLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGG-AKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGG-GGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECch-hchhhHHHHHHHHHCCCeEEEe
Confidence 466888899999999998888742221 1125789999998 9999999999999999998765
No 329
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=87.17 E-value=0.76 Score=46.15 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhh-h---cCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLH-R---SGINRIIGIGSCLTRNHILQHYIERIYGLQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~-~---~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~ 345 (547)
...++++..++.++-.+++.++. +. + ..++.|+++||+ ++.+.+.+.+++.++.|+...
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~IvL~GG~-s~~p~l~~~l~~~l~~~v~~~ 337 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEF--FRIQLEEASPEVGYLLGGG-SKLRGLASLLTDTLGVNLEPV 337 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--HHHHC---CCSEEEEESGG-GGSTTHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCcCEEEEECcc-ccchhHHHHHHHHhCCCeEec
Confidence 46778889999999888888873 32 2 237899999998 999999999999999999886
No 330
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=87.08 E-value=1.1 Score=44.35 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEecc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQD 347 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~~ 347 (547)
.++++.+++.++++-.+....+. ..++.+.++|+++||. +.|..+++.+.+.+ +..+.+++.
T Consensus 216 ~~~diAa~fq~~l~~~l~~~~~~-~~~~~~~~~vvlsGGV-a~N~~l~~~l~~~l~~~g~~v~~p~~ 280 (330)
T 2ivn_A 216 RVEDLAYSFQETAFAALVEVTER-AVAHTEKDEVVLVGGV-AANNRLREMLRIMTEDRGIKFFVPPY 280 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCSEEEEESGG-GGCHHHHHHHHHHHHHHTCEEECCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEEccH-HHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 68899999999999888888775 3555778999999996 99999999999877 667766654
No 331
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=86.66 E-value=0.9 Score=47.21 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=36.4
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|++|+++++.+|+.-.......+++ | . .......+++++-+..+|..+
T Consensus 81 ~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~I--p-----~-~~~~~~~~~lfd~Ia~~i~~f 137 (485)
T 3o8m_A 81 DFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRL--P-----D-HLRTGTSEQLWSFIAKCLKEF 137 (485)
T ss_dssp EEEEEEESSSEEEEEEEEEESSSCEEEEEEEEEC--C-----T-TGGGSBHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCeEEEEEEEECCCCceEEEEEEEec--C-----c-hhccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998876201111222321 1 1 112334678888888887654
No 332
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Probab=86.45 E-value=0.47 Score=46.50 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
+.++|+||-||||.|+-++|.+|++ +++.+.+.
T Consensus 6 ~~~~IavDWGTSnlRa~l~~~~g~v-l~~~~~~~ 38 (330)
T 3t69_A 6 AGYYAAVDWGTSSFRLWIIGEDGAV-LAERRSAE 38 (330)
T ss_dssp --CEEEEEECSSCEEEEEECTTSCE-EEEEEESC
T ss_pred CCCEEEEEecchheehheecCCCCc-hhhhcCCc
Confidence 3588999999999999999999988 77665443
No 333
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=85.95 E-value=1.3 Score=47.61 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh-hhhhhhc-----cC
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA-MRDASYA-----LE 358 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~-~~~a~~~-----~g 358 (547)
.+++++.+++.+...+++.++...+....++.|+++||+ ++.+.+.+++.+.++.++.....+. ..+.+++ +.
T Consensus 305 ~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~-sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~ 383 (605)
T 4b9q_A 305 LESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGG-GGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCc-cCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhc
Confidence 567788888888888877766311111237899999997 9999999999999999987755543 2332222 11
Q ss_pred CCCCCeeeccccCCceeeEeccCCCC
Q psy224 359 KPAPEFEGQAVVNGQFKNIKLSQYKG 384 (547)
Q Consensus 359 ~~~p~~~l~~~~~G~~~~~~l~~~~g 384 (547)
....++.+.| ..- .++.+....|
T Consensus 384 ~~~~~~~l~d-v~p--~slgie~~~g 406 (605)
T 4b9q_A 384 GDVKDVLLLD-VTP--LSLGIETMGG 406 (605)
T ss_dssp TSSCSEEEEC-BCS--SCEEEEETTT
T ss_pred CCCCceEEEe-eee--eEEEEEEcCC
Confidence 2245676666 333 2444444334
No 334
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=84.77 E-value=1.5 Score=44.89 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred CceEEEEEeCCceeEEEEEecC--CCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN--TREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPK 71 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~--g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~ 71 (547)
.++++|||||||++|+++...+ |..+++....+..- -....-.|.+...+++++++..+..
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~g--------v~~G~I~di~~~~~~I~~av~~ae~ 69 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG--------LDEGEIKDAIAFKESVNTLLKELEE 69 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCS--------EETTEESBHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCC--------eeCCEEEcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999853 32336665544211 1123467999999999999887533
No 335
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=84.33 E-value=1.4 Score=44.31 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~~~~~~ 349 (547)
.+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.+ +.++.....+.
T Consensus 315 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~ 379 (394)
T 3qfu_A 315 FEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGS-TRIPKVQQLLESYFDGKKASKGINPD 379 (394)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGG-GGSHHHHHHHHHHTTTCCCBCCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCc-cccHHHHHHHHHHcCCCCCCCCcCHH
Confidence 456777778877777777665311121227899999997 99999999999999 78887765554
No 336
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=83.72 E-value=2 Score=46.33 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEEe
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIVE 345 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~~ 345 (547)
+++++.+++.++++-.+...... ..++.|+++|+++||. +.|+.+++.+.+.+ +.++...
T Consensus 571 ~~~dIAasFh~ala~~L~~~~~r-a~~~~g~~~VvLsGGV-~~N~~Lre~L~~~l~g~~v~~p 631 (657)
T 3ttc_A 571 PVNQRAWAFHDALAQGFAALMRE-QATMRGITTLVFSGGV-IHNRLLRARLAHYLADFTLLFP 631 (657)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCEEEEESGG-GGCHHHHHHHHHHTTTSEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEECcH-HHHHHHHHHHHHHhCCCEEEec
Confidence 78999999999999999888775 4566789999999996 99999999999988 6666554
No 337
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=82.85 E-value=1.5 Score=44.42 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh-CCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY-GLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l-~~~v~~~~~~~ 349 (547)
.+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.+ +.++.....+.
T Consensus 323 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~ 387 (404)
T 3i33_A 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGS-TRIPKIQKLLQDFFNGKELNKSINPD 387 (404)
T ss_dssp HHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGG-GGCHHHHHHHHHHTTTCCCBCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCc-cccHHHHHHHHHHcCCCCCCCCcCHH
Confidence 456667777777777777665311111227899999997 99999999999999 78877765554
No 338
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=82.58 E-value=0.65 Score=49.49 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC-CceEEecch
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG-LQLIVEQDQ 348 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~-~~v~~~~~~ 348 (547)
.+++...+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++ .++.....+
T Consensus 302 ~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~-srip~v~~~l~~~f~~~~v~~~~np 365 (554)
T 1yuw_A 302 FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGS-TRIPKIQKLLQDFFNGKELNKSINP 365 (554)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGG-GGCHHHHHHHHHHTTTCCCBCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCc-ccChHHHHHHHHHcCCCccccCCCc
Confidence 345666666666666666554211111127899999997 999999999999996 776655444
No 339
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=82.39 E-value=0.59 Score=42.16 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=33.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF---SDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l---~~~~~~~~~~~~~vi~is~ 426 (547)
.+|++|+.|| ..+||+|....+.+ .++.+++.+ +++++-+..
T Consensus 20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~ 64 (191)
T 3l9s_A 20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV 64 (191)
T ss_dssp CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence 4689999999 99999999999987 578877764 466666654
No 340
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=82.14 E-value=2 Score=43.14 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
.+++++..++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++.++.....+.
T Consensus 305 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~-s~~p~l~~~l~~~~~~~v~~~~~p~ 368 (383)
T 1dkg_D 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNPD 368 (383)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGG-GGSHHHHHHHHHHHSSCCBCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCc-cccHHHHHHHHHHhCCCCCCCcChH
Confidence 345566677777666666555211111226899999997 9999999999999998877665554
No 341
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=81.93 E-value=0.91 Score=43.80 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred CceEEEEEeCCceeEEEEEecCCCeeecccccccc
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ 37 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~ 37 (547)
+.++|+||-||||.|+-++| +|++ +++.+.+..
T Consensus 5 ~~~~IavDWGTs~lRa~l~~-~g~v-l~~~~~~~G 37 (295)
T 3nuw_A 5 TARYIAIDWGSTNLRAWLYQ-GEEC-LESRQSEAG 37 (295)
T ss_dssp GCEEEEEEECSSCEEEEEEE-TTEE-EEEEEESCC
T ss_pred CccEEEEEecchheeeeeec-CCce-ehhhcCCCc
Confidence 35789999999999999999 7877 877765553
No 342
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=81.46 E-value=1.1 Score=35.66 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHH
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDR 410 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~ 410 (547)
..|+.|+ ++|||+|......|.++
T Consensus 16 ~~v~vy~-~~~Cp~C~~ak~~L~~~ 39 (99)
T 3qmx_A 16 AKIEIYT-WSTCPFCMRALALLKRK 39 (99)
T ss_dssp CCEEEEE-CTTCHHHHHHHHHHHHH
T ss_pred CCEEEEE-cCCChhHHHHHHHHHHC
Confidence 3467788 99999999988777653
No 343
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=80.14 E-value=2.8 Score=42.51 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEE
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIV 344 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~ 344 (547)
.+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+++.+.++.++.+
T Consensus 316 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-s~~p~v~~~l~~~f~~~~~v 374 (409)
T 4gni_A 316 YETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGT-SNTPRIAANFRYIFPESTRI 374 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGG-GGCHHHHHHHHHHSCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCc-cccHHHHHHHHHHcCCcccc
Confidence 456667777777777766665211111126899999997 99999999999999988544
No 344
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=79.95 E-value=4.1 Score=40.62 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=39.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
+.++|||||||++|++++. +|+. +......+.+... -. ...-.|++...+++++++...
T Consensus 13 ~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~-----~~-~g~i~d~~~~~~~ik~~~~~~ 72 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGL-----LM-EGMVAEPAALAQEIKELLLEA 72 (377)
T ss_dssp CCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTS-----EE-TTEESCHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCc-----cc-CCCcCCHHHHHHHHHHHHHHc
Confidence 5689999999999999996 5553 1333343332110 01 123578999999999988763
No 345
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=79.62 E-value=1.4 Score=49.82 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=37.2
Q ss_pred CceEEEEEeCCceeEEEEEecC-CC--eeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN-TR--EELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~-g~--~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
...||+||+|+|++|+++++.+ |+ + +...+..+.. | . .......+++++-+..+|..+
T Consensus 525 ~G~~lalDlGGTn~Rv~~V~l~~g~~~~-~~~~~~~~~i--p-----~-~~~~~~~~~lfd~Ia~~i~~~ 585 (917)
T 1cza_N 525 NGDFLALDLGGTNFRVLLVKIRSGKKRT-VEMHNKIYAI--P-----I-EIMQGTGEELFDHIVSCISDF 585 (917)
T ss_dssp CEEEEEEEESSSSEEEEEEEEECSTTCE-EEEEEEEECC--C-----H-HHHTSBHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCcEEEEEEEeCCCccee-EEeeeeEEec--C-----c-ccccCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999986 54 4 4333333322 1 1 012335677787777776654
No 346
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=79.52 E-value=1.4 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.2
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.+.+|||+|+|.+|++++ +++++
T Consensus 20 ~~~iGIDiGsTt~K~V~~-~~~~i 42 (287)
T 2ews_A 20 HMKVGIDAGGTLIKIVQE-QDNQR 42 (287)
T ss_dssp -CEEEEEECSSEEEEEEE-CSSCE
T ss_pred CeEEEEEEChhhEEEEEE-cCCEE
Confidence 478999999999999999 45665
No 347
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=79.51 E-value=3.3 Score=43.32 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=44.6
Q ss_pred CceEEEEEeCCceeEEEEEecC-CCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCCch
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN-TRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLPKD 72 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~-g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d~r 72 (547)
|+|+.|||||+|++.+++-+.+ |++ ++++...++. .--...++.+...+++.+++.....+
T Consensus 1 m~~i~GiDIGnsttev~l~~~~~g~i~~l~~g~~~tt---------GiKGt~~Ni~g~~~si~~a~~~a~~~ 63 (607)
T 1nbw_A 1 MPLIAGIDIGNATTEVALASDYPQARAFVASGIVATT---------GMKGTRDNIAGTLAALEQALAKTPWS 63 (607)
T ss_dssp -CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECC---------SSTTSGGGHHHHHHHHHHHHTTSSCC
T ss_pred CcEEEEEEecCceEEEEEEEEcCCeEEEEEeecccCC---------ccceeeeCHHHHHHHHHHHHHHhCCc
Confidence 5799999999999999987754 542 3566655542 11245789999999999999776554
No 348
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=77.87 E-value=19 Score=32.76 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=59.9
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+.+.++.||...||+.|....+.+.+++++|+.+ +.++.+..+... .+.+.+.
T Consensus 130 ~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~--------------------------~~~~l~~ 182 (227)
T 4f9z_D 130 VIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKE--------------------------NGKVISF 182 (227)
T ss_dssp SCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGG--------------------------GHHHHHH
T ss_pred CCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHh--------------------------HHHHHHH
Confidence 4344444442778999998899999999888764 666665544311 1234467
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
||+... ..|+..+++..+...+.. +. ..-..+.+.+.++.+.
T Consensus 183 fgl~~~----~~P~~~i~~~~~~~ky~~--~~-~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 183 FKLKES----QLPALAIYQTLDDEWDTL--PT-AEVSVEHVQNFCDGFL 224 (227)
T ss_dssp TTCCGG----GCSEEEEEESSSCCEEEE--TT-CCCCHHHHHHHHHHHH
T ss_pred cCCCcc----cCCEEEEEECCCCccccC--Cc-CCCCHHHHHHHHHHHh
Confidence 887632 379999998766545554 11 1235677777777654
No 349
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=77.79 E-value=1 Score=37.71 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.8
Q ss_pred EEEEEeCCCCCCcHHH
Q psy224 388 VLFFYPLDFTFVCPTE 403 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~ 403 (547)
|+.|+ .+|||+|...
T Consensus 39 Vvvy~-~~~Cp~C~~a 53 (129)
T 3ctg_A 39 VFVAA-KTYCPYCKAT 53 (129)
T ss_dssp EEEEE-CTTCHHHHHH
T ss_pred EEEEE-CCCCCchHHH
Confidence 66778 9999999976
No 350
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=77.44 E-value=8.3 Score=36.59 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.1
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|..|. ..+||+|+..-.-|.++..++ ++..+.+..+
T Consensus 43 ~~~VelyT-s~gCp~C~~Ak~lL~~~~~~~---~vi~l~~~v~ 81 (270)
T 2axo_A 43 KGVVELFT-SQGCASCPPADEALRKMIQKG---DVVGLSYHVD 81 (270)
T ss_dssp CCEEEEEE-CTTCTTCHHHHHHHHHHHHHT---SSEEEEEECS
T ss_pred CcEEEEEe-CCCCCChHHHHHHHHHhhccC---CeeeEEEEEE
Confidence 35677777 999999999888888776543 5555555543
No 351
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=77.41 E-value=3.4 Score=33.13 Aligned_cols=27 Identities=0% Similarity=-0.196 Sum_probs=18.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 395 DFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 395 ~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
+|||+|......|.+ .|+.+..+..+.
T Consensus 28 ~~Cp~C~~ak~~L~~-------~~i~~~~vdi~~ 54 (109)
T 1wik_A 28 AKCGFSKQILEILNS-------TGVEYETFDILE 54 (109)
T ss_dssp CCSSTHHHHHHHHHH-------TCSCEEEEESSS
T ss_pred CCCchHHHHHHHHHH-------cCCCeEEEECCC
Confidence 899999987666543 366666666553
No 352
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=77.30 E-value=2.4 Score=37.69 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=34.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHhhCCcEEEEEeCC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF-SDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~~~~~~vi~is~d 427 (547)
.++++++.|| ...||+|....+.+ .++.+++.. .+++..+...
T Consensus 16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~ 59 (195)
T 3c7m_A 16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE 59 (195)
T ss_dssp SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence 4677889999 89999999999999 888887753 4677766654
No 353
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=77.26 E-value=1.8 Score=37.27 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCe
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|.| .+||||.|+..++.++.|..|..
T Consensus 1 ~~m-riLGiDpG~~riGvAv~d~~g~~ 26 (150)
T 1vhx_A 1 MSL-RILGLDLGTKTLGVALSDEMGWT 26 (150)
T ss_dssp -CE-EEEEEEECSSEEEEEEECTTSSS
T ss_pred CCC-EEEEEEccCCEEEEEEEECCCCE
Confidence 554 58999999999999999998876
No 354
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=77.03 E-value=2.7 Score=43.03 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=34.9
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|+.|+++++..|...+.+...+.|.. ...-..+++++-+..||..+
T Consensus 60 ~~LAlDlGGTn~RV~~V~l~g~~~~~~~~~~ip~~----------~~~g~~~~LFd~Ia~~i~~f 114 (445)
T 3hm8_A 60 DFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPET----------VAQGSGQQLFDHIVDCIVDF 114 (445)
T ss_dssp EEEEEEESSSSEEEEEEEESSSEEEEEEEECCCHH----------HHTSBHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCeEEEEEEEECCceEEEEEEeccCcc----------ccCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999998764122222222110 11224567888777776543
No 355
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=77.01 E-value=1.4 Score=35.88 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|. .+|||+|....+.|.++ |+.+-.+..|
T Consensus 19 v~vy~-~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd 50 (114)
T 3h8q_A 19 VVIFS-KSYCPHSTRVKELFSSL-------GVECNVLELD 50 (114)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred EEEEE-cCCCCcHHHHHHHHHHc-------CCCcEEEEec
Confidence 44577 99999998776666543 4444444444
No 356
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=76.65 E-value=4.6 Score=44.35 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~ 346 (547)
+++++.+++.++++-.+...... ..++.|+++|+++||. +.|+.+++.+.+.+ +..+..++
T Consensus 665 ~~~dIAasFq~ala~~L~~~~~~-a~~~~g~~~VvLsGGV-a~N~~Lr~~L~~~l~~~g~~v~~p~ 728 (761)
T 3vth_A 665 EKSYISAKFHNTVVNFTYDLANL-IRKETGINKVVLSGGS-FQNRYLLRRLIEKLSLSGFEVYSNS 728 (761)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEESGG-GGSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCEEEEECcH-HHHHHHHHHHHHHHHhCCCEEEecC
Confidence 67888888888888888887765 4556789999999996 99999999998876 67777654
No 357
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=76.02 E-value=1 Score=36.41 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=16.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
|+.|+ ++|||+|....+.|.+
T Consensus 21 v~vy~-~~~Cp~C~~~~~~L~~ 41 (113)
T 3rhb_A 21 VVIYS-KTWCSYCTEVKTLFKR 41 (113)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHH
Confidence 56688 9999999977766654
No 358
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=75.01 E-value=2 Score=32.99 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
++.|+ .+|||.|....+.|.+ .++.+..+..+
T Consensus 8 v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~ 39 (92)
T 2khp_A 8 VIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDAS 39 (92)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEEST
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 66777 9999999977665543 35555555544
No 359
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=74.00 E-value=2.7 Score=42.48 Aligned_cols=49 Identities=4% Similarity=-0.003 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc-C-CcEEEeeCCchh-hcHHHHHHHHHHh
Q psy224 288 LFVALCEGIINNIHDIMNRSVLHRS-G-INRIIGIGSCLT-RNHILQHYIERIY 338 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~~~-g-~~~I~~~GG~~~-k~~~~~q~~Ad~l 338 (547)
-.+-+++..+|.++..+-.+ .... | ++-|+.+||. . ++..+++.+.+-+
T Consensus 313 ~A~lA~d~f~yri~k~IGa~-aa~L~G~vDaIVFTgGI-GEns~~vR~~v~~~l 364 (415)
T 3sk3_A 313 DAKRAMDVYCHRLAKYIGSY-TALMDGRLDAVVFTGGI-GENAAMVRELSLGKL 364 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHG-GGGSTTCCCEEEEEHHH-HTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEECCcc-ccCCHHHHHHHHhhc
Confidence 35667899999999988752 3444 5 8999999995 7 5667767666544
No 360
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=72.68 E-value=2 Score=43.52 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=19.5
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+.++|||+|||+++++++ .+|++
T Consensus 13 ~~vvGIDlGTt~s~va~~-~~g~~ 35 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHT-VDDKA 35 (409)
T ss_dssp CCEEEEEECSSEEEEEEE-ETTEE
T ss_pred CcEEEEEcCCCeEEEEEE-eCCce
Confidence 579999999999999998 55553
No 361
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=72.67 E-value=7.2 Score=41.13 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHh---CCceEEec
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIY---GLQLIVEQ 346 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l---~~~v~~~~ 346 (547)
+++++.+++.+.++-.+....+. .+++.|.++|+++||. +.|..+++.+...+ +..+..++
T Consensus 220 ~~~~ia~~fq~~~~~~l~~~~~~-a~~~~~~~~~~~~GGV-a~N~~l~~~l~~~~~~~~~~~~~p~ 283 (540)
T 3en9_A 220 RLEDICYSLQEYAFSMLTEITER-ALAHTNKGEVMLVGGV-AANNRLREMLKAMCEGQNVDFYVPP 283 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEESGG-GGCHHHHHHHHHHHHHTTCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCeEEEeCcH-HhHHHHHHHHHHHHHhcCCEEEeCC
Confidence 57899999999988888877765 4667789999999996 99999999998866 55666644
No 362
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=72.27 E-value=2.7 Score=40.01 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.||.+|+.|+ -..||+|+...+.+.+..++ -.++++.+..
T Consensus 146 ~gk~~I~vFt-Dp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi 185 (273)
T 3tdg_A 146 NKDKILYIVS-DPMCPHCQKELTKLRDHLKE---NTVRMVVVGW 185 (273)
T ss_dssp GTTCEEEEEE-CTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred CCCeEEEEEE-CcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence 4788999999 99999999999999976653 4567776654
No 363
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=72.13 E-value=2.6 Score=36.94 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=34.6
Q ss_pred ccCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 379 LSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 379 l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
+... .++++|+-|+ .-.||+|....+.+.++.+++.+ ++.++-+.
T Consensus 15 l~~p~~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~~ 60 (184)
T 4dvc_A 15 LKTPASSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPE-GAKFQKNH 60 (184)
T ss_dssp CSSCCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred CCCCCCCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCC-ceEEEEEe
Confidence 3443 4688999999 99999999999999998888765 34555444
No 364
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=72.12 E-value=2.2 Score=42.91 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=19.0
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
..++|||+|||++++++++ +|++
T Consensus 18 ~~viGID~GTt~s~va~~~-~g~~ 40 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMK-NGKT 40 (394)
T ss_dssp CSCEEEEECSSEEEEEEEC-SSCE
T ss_pred CCEEEEEeCcCcEEEEEEE-CCee
Confidence 4679999999999999986 4543
No 365
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=71.90 E-value=4 Score=42.75 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
+++++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++.++.....+.
T Consensus 275 e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~f~~~~~~~~~p~ 337 (509)
T 2v7y_A 275 EELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGS-TRIPAVQEAIKRELGKEPHKGVNPD 337 (509)
T ss_dssp HHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGG-GGCHHHHHHHHHHHSSCCBCCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCc-ccChHHHHHHHHHhCCCcCcCCCch
Confidence 45666666666666666555211111227899999997 9999999999999998876655543
No 366
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=71.12 E-value=3.3 Score=42.73 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=35.3
Q ss_pred eEEEEEeCCceeEEEEEecCCCe----eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE----ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRL 69 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~----~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 69 (547)
.||+||+|+|+.|++++...|.. .+...+..|++ |. ....-..+++|+-+..||..+
T Consensus 78 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~~~I--p~------~l~~gt~~eLFd~IA~~i~~f 138 (470)
T 3f9m_A 78 DFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI--PE------DAMTGTAEMLFDYISECISDF 138 (470)
T ss_dssp EEEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEEC--CH------HHHSSBHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCceEEEEEEEECCCCCCcceEEEEEEeecC--Ch------HhccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999976532 13333333422 11 112335678888777777653
No 367
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=69.38 E-value=5.8 Score=38.95 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hc--C-C-cEEEeeCCchhhcHHHHHHHHHHhCCceEEecchh
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLH-RS--G-I-NRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQA 349 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~-~~--g-~-~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~ 349 (547)
..++++..++.+.-.+++.++. .. +. . + +.|+++||+ ++.+.+.+.+.+.++.++.....+.
T Consensus 246 ~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~~IvL~GG~-s~~p~l~~~l~~~~~~~v~~~~~p~ 312 (344)
T 1jce_A 246 VREALRSVVVAIVESVRTTLEK--TPPELVSDIIERGIFLTGGG-SLLRGLDTLLQKETGISVIRSEEPL 312 (344)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHCEEEESGG-GCSBTHHHHHHHHHSSCEEECSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCchhccchhhCcEEEECcc-ccchHHHHHHHHHHCCCccccCChH
Confidence 3455666666666666665552 11 11 1 3 589999998 9999999999999999988876654
No 368
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=67.21 E-value=5 Score=43.69 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
.+++++.+++.+.-.++..++...+....+..|+++||+ ++.+.+.+.+.+.++.++....++
T Consensus 306 fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGs-sriP~v~~~l~~~fg~~~~~~~nP 368 (675)
T 3d2f_A 306 LEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGT-TRIPTLKQSISEAFGKPLSTTLNQ 368 (675)
T ss_dssp HHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGG-GGSHHHHHHHHHHHTSCEECCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCC-ccChHHHHHHHHhcCCCccccCCc
Confidence 345666667666666666555211111127899999997 999999999999999988765554
No 369
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=67.11 E-value=2.2 Score=42.78 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=18.0
Q ss_pred ceEEEEEeCCceeEEEEEecCCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
..++|||+|||++++++++ +|+
T Consensus 2 ~~~vGIDlGTt~s~va~~~-~g~ 23 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMD-GTT 23 (383)
T ss_dssp -CCCEEECCSSEEEEEEEE-TTE
T ss_pred CcEEEEEcCCCCEEEEEEE-CCe
Confidence 3589999999999999986 454
No 370
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=66.74 E-value=3.6 Score=40.25 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceE
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLI 343 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~ 343 (547)
..++.+.++|...-.+.+.++. .+++.++++|+++|+| +++.+.+++. +|+.
T Consensus 248 ~~~lA~~~~~~q~~~I~~av~~-v~~~~~~~~vv~aG~G----~~L~~~la~~--~~~~ 299 (334)
T 3cet_A 248 AENIAKNYYELWKELILENVEN-VAEKYGSKKVVITGLG----ENILKDALAD--FEVI 299 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEESTT----HHHHHHHTTT--SEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCeEEEeCCc----HHHHHHHHhh--CCee
Confidence 5678888888888888888765 3556666799999986 3555555544 5555
No 371
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=65.59 E-value=5.7 Score=35.02 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=32.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHhhC-CcEEEEEeC
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAF-SDRAEEFKKI-NTQVIACST 426 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~~~-~~~vi~is~ 426 (547)
.++++|+.|+ -..||+|....+.+ .++.++|.+. +++++....
T Consensus 10 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~ 54 (186)
T 3bci_A 10 NGKPLVVVYG-DYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNL 54 (186)
T ss_dssp -CCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEC
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEec
Confidence 3577888888 99999999999998 4676777643 467666543
No 372
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=64.13 E-value=5 Score=38.22 Aligned_cols=39 Identities=8% Similarity=-0.121 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCc
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSC 323 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~ 323 (547)
|.+.|-..++-|++..+...+++ .-++.+ .-+|+++||.
T Consensus 203 T~~ai~sGi~~g~~g~Ie~~i~~-~~~e~~~~~~vi~TGG~ 242 (271)
T 2f9w_A 203 TAEAVERGCLLMLRGFVREQYAM-ACELLGPDCEIFLTGGD 242 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHCTTCEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCC
Confidence 78889999999999999888885 233455 4589999996
No 373
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=63.40 E-value=4.2 Score=43.64 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=19.0
Q ss_pred CceEEEEEeCCceeEEEEEecCCCe
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|..++|||+|||+.++++++ +|+.
T Consensus 1 M~~viGIDlGTT~S~Va~~~-~g~~ 24 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMD-GTTP 24 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEE-TTEE
T ss_pred CCcEEEEEcCCCcEEEEEEE-CCEE
Confidence 34789999999999999995 4443
No 374
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=62.84 E-value=3.1 Score=31.45 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFS 408 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~ 408 (547)
|+.|+ .+|||.|......|.
T Consensus 6 v~ly~-~~~Cp~C~~~~~~L~ 25 (89)
T 3msz_A 6 VKIYT-RNGCPYCVWAKQWFE 25 (89)
T ss_dssp EEEEE-CTTCHHHHHHHHHHH
T ss_pred EEEEE-cCCChhHHHHHHHHH
Confidence 56677 999999988665554
No 375
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=62.38 E-value=5 Score=35.63 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=33.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 383 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
.++++|+.|+ -..||+|....+.+.++.+++....++++.-.
T Consensus 13 ~a~vtiv~f~-D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~ 54 (182)
T 3gn3_A 13 HGPRLFEVFL-EPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRL 54 (182)
T ss_dssp CCSEEEEEEE-CTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEE
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3678888888 99999999999999888777633357777654
No 376
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=61.79 E-value=9.9 Score=28.71 Aligned_cols=32 Identities=6% Similarity=-0.111 Sum_probs=20.6
Q ss_pred EEEEEeCC----CCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy224 388 VLFFYPLD----FTFVCPTEIIAFSDRAEEFKKINTQVIACSTD 427 (547)
Q Consensus 388 ll~f~~~~----~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d 427 (547)
|+.|. .+ +||.|.....-|++ +|+.+-.+..+
T Consensus 2 v~iY~-~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~ 37 (87)
T 1aba_A 2 FKVYG-YDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM 37 (87)
T ss_dssp EEEEE-CCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred EEEEE-eCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence 44566 88 99999876554443 46666566555
No 377
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=61.68 E-value=8.3 Score=40.82 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCe
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|+|..++|||+|||+..+++++ +|++
T Consensus 1 M~m~~~iGIDlGTt~s~va~~~-~g~~ 26 (554)
T 1yuw_A 1 MSKGPAVGIDLGTTYSCVGVFQ-HGKV 26 (554)
T ss_dssp CCSCCCEEEEECSSEEEEEEEC-SSSE
T ss_pred CCCCCEEEEEeCcccEEEEEEE-CCEE
Confidence 8888999999999999999986 4543
No 378
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=61.24 E-value=4.4 Score=40.79 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=18.6
Q ss_pred CceEEEEEeCCceeEEEEEecCCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
++.++|||+|||++++++++ +|+
T Consensus 22 ~~~viGID~GTt~s~va~~~-~g~ 44 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQ-HGK 44 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEE-TTE
T ss_pred cCCEEEEEcCCccEEEEEEE-CCe
Confidence 35689999999999999887 454
No 379
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=59.47 E-value=6 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=18.0
Q ss_pred eEEEEEeCCceeEEEEEecCCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
.++|||+|||++++++.+. |+
T Consensus 3 ~~iGIDlGTt~s~va~~~~-g~ 23 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEG-GE 23 (509)
T ss_dssp CEEEEEECSSEEEEEEEET-TE
T ss_pred CEEEEEcCCceEEEEEEEC-CE
Confidence 5899999999999999864 54
No 380
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=59.33 E-value=14 Score=38.76 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.9
Q ss_pred CceEEEEEeCCceeEEEEEecCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~g 25 (547)
.+.+.+||+||.|+|.++++.++
T Consensus 10 ~~~~AaIDiGSNSirL~I~~~~~ 32 (513)
T 1u6z_A 10 PQEFAAVDLGSNSFHMVIARVVD 32 (513)
T ss_dssp --CEEEEEECSSCEEEEEEEEET
T ss_pred CCeEEEEEeccccEEEEEEEEcC
Confidence 35789999999999999999654
No 381
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=59.24 E-value=4.2 Score=44.28 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=17.2
Q ss_pred eEEEEEeCCceeEEEEEecC
Q psy224 5 VVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~ 24 (547)
.++|||+|||+.++++++..
T Consensus 3 ~~iGIDlGTtns~va~~~~g 22 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNR 22 (675)
T ss_dssp CCEEEECCSSEEEEEEEETT
T ss_pred cEEEEEcCCCcEEEEEEECC
Confidence 48999999999999998643
No 382
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=59.18 E-value=26 Score=27.98 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=51.1
Q ss_pred EEEEEeCCCCC--Cc----HHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 388 VLFFYPLDFTF--VC----PTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 388 ll~f~~~~~cp--~C----~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
+-.|=|+.||+ .| ..++-+++...+.++++|+.|.=.+..+. -..|.+.. .=.++.
T Consensus 7 i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~--P~~F~~N~----------------~V~~~L 68 (106)
T 3ktb_A 7 IEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDE--PQVYVSNK----------------TVNDFL 68 (106)
T ss_dssp EEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTTC--TTHHHHSH----------------HHHHHH
T ss_pred EEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEccccC--hHHHhcCH----------------HHHHHH
Confidence 66788999998 44 67788999999999999987766665431 12333321 013445
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+.+|+. ..|.++ | ||+|+..-
T Consensus 69 ~~~G~~------~LP~~~-V--DGevv~~G 89 (106)
T 3ktb_A 69 QKHGAD------ALPITL-V--DGEIAVSQ 89 (106)
T ss_dssp HTTCGG------GCSEEE-E--TTEEEECS
T ss_pred HHcCcc------cCCEEE-E--CCEEEEec
Confidence 567766 478765 4 68888665
No 383
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=58.10 E-value=8.5 Score=38.54 Aligned_cols=48 Identities=4% Similarity=-0.146 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchhh-cHHHHHHHHHH
Q psy224 288 LFVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLTR-NHILQHYIERI 337 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~k-~~~~~q~~Ad~ 337 (547)
-.+-++|..+|.++..+-.+ .... +++.|+++||. +. +..+++.+.+-
T Consensus 298 ~A~la~d~f~yriak~Iga~-aa~LG~vDaIVfTGGI-gEns~~vr~~I~~~ 347 (398)
T 4ijn_A 298 HAKLAYDVYIHRLRKYIGAY-MAVLGRTDVISFTAGV-GENVPPVRRDALAG 347 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHSSCCEEEEEHHH-HHHCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhCCCcEEEECCcc-ccccHHHHHHHHHH
Confidence 35668888999988877642 2334 59999999995 75 56577766543
No 384
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.36 E-value=23 Score=28.21 Aligned_cols=39 Identities=5% Similarity=-0.055 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|. .++||.|..- ..-++..+.++++++.+..+..+.
T Consensus 10 V~vy~-~~~C~~C~~~-~~~~~ak~~L~~~gi~y~~vdI~~ 48 (111)
T 2ct6_A 10 IRVFI-ASSSGFVAIK-KKQQDVVRFLEANKIEFEEVDITM 48 (111)
T ss_dssp EEEEE-CSSCSCHHHH-HHHHHHHHHHHHTTCCEEEEETTT
T ss_pred EEEEE-cCCCCCcccc-hhHHHHHHHHHHcCCCEEEEECCC
Confidence 55566 8999999841 000112223344577777776654
No 385
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=56.16 E-value=33 Score=27.57 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=46.6
Q ss_pred EEEEEeCCCCC--Cc----HHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH
Q psy224 388 VLFFYPLDFTF--VC----PTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461 (547)
Q Consensus 388 ll~f~~~~~cp--~C----~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 461 (547)
|-.|=|+.||+ .| ..++-+++...+.++++|+.|.=.+..+. -..|.+.. .=.++.
T Consensus 4 i~ifepamCCstGvCG~~vd~~L~~~~~~~~~lk~~Gi~V~RyNL~~~--P~aF~~N~----------------~V~~~L 65 (110)
T 3kgk_A 4 LMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERFNLAQQ--PMSFVQNE----------------KVKAFI 65 (110)
T ss_dssp EEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEETTTC--TTHHHHSH----------------HHHHHH
T ss_pred eEEecchhccccCCcCCCCCHHHHHHHHHHHHHHHCCCeEEEEccccC--hHHHhcCH----------------HHHHHH
Confidence 55688999996 55 44588888888899988988777665431 12344321 014556
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
+.+|+. ..|.++ | ||+|+..-
T Consensus 66 ~~~G~~------~LP~~~-V--DGevv~~G 86 (110)
T 3kgk_A 66 EASGAE------GLPLLL-L--DGETVMAG 86 (110)
T ss_dssp HHHCGG------GCCEEE-E--TTEEEEES
T ss_pred HHcCcc------cCCEEE-E--CCEEEEec
Confidence 778877 478765 4 68888776
No 386
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=55.71 E-value=12 Score=39.10 Aligned_cols=39 Identities=8% Similarity=0.324 Sum_probs=33.7
Q ss_pred CcceeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEE
Q psy224 447 DMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQIT 491 (547)
Q Consensus 447 ~~~fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~ 491 (547)
.+.++...|.+.++.+.|||. ..|+.++++++|++....
T Consensus 184 ~v~v~~v~~~~~~l~~kfgV~------~~Pslvl~~~nGk~~~~~ 222 (519)
T 3t58_A 184 AVAVRRVLNTESDLVNKFGVT------DFPSCYLLLRNGSVSRVP 222 (519)
T ss_dssp TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECC
T ss_pred CeeEEEecCchHHHHHHcCCC------CCCeEEEEeCCCceeecc
Confidence 677788888889999999998 479999999999987665
No 387
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=55.53 E-value=21 Score=31.15 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEEeCCceeEEEEEecCCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
.+||||-|++.+-.++++.+|+
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~ 23 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGK 23 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSS
T ss_pred EEEEEccccCceEEEEEEecCC
Confidence 5899999999999999999886
No 388
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=55.05 E-value=21 Score=27.29 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|+.|. .++||.|...-. -.+..+.++++|+.+.-+..+.
T Consensus 4 v~ly~-~~~C~~c~~~~~-~~~ak~~L~~~~i~~~~~di~~ 42 (93)
T 1t1v_A 4 LRVYS-TSVTGSREIKSQ-QSEVTRILDGKRIQYQLVDISQ 42 (93)
T ss_dssp EEEEE-CSSCSCHHHHHH-HHHHHHHHHHTTCCCEEEETTS
T ss_pred EEEEE-cCCCCCchhhHH-HHHHHHHHHHCCCceEEEECCC
Confidence 45566 899999941110 0111122334566665665553
No 389
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=54.36 E-value=12 Score=33.56 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=33.1
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHhh-CCcEEEEEeC
Q psy224 381 QYKGQYVVLFFYPLDFTFVCPTEIIAF-SDRAEEFKK-INTQVIACST 426 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~~-~~~~vi~is~ 426 (547)
.-.++++|+.|+ -..||+|....+.+ ..+.++|.+ -+++++....
T Consensus 26 ~~~a~vtvvef~-D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~ 72 (202)
T 3gha_A 26 KDDAPVTVVEFG-DYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV 72 (202)
T ss_dssp CTTCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred CCCCCEEEEEEE-CCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence 335789999999 99999999988776 455566753 3577776654
No 390
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=53.79 E-value=6.9 Score=38.37 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.0
Q ss_pred ceEEEEEeCCceeEEEEE
Q psy224 4 QVVLGIDIGTTSVKVCLI 21 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~ 21 (547)
...+|||+|||++|+++.
T Consensus 3 ~~~igIDlGT~~s~v~~~ 20 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLR 20 (344)
T ss_dssp -CEEEEEECSSEEEEEET
T ss_pred CceEEEEcCcCcEEEEEC
Confidence 458999999999999863
No 391
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=53.71 E-value=9 Score=37.21 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCC---ceEEecchhhhh
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGL---QLIVEQDQAMRD 352 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~---~v~~~~~~~~~~ 352 (547)
+++++.++.++-.+...++. + ..+..|+++||+ ++- +.+.+.+.++. ++.....+....
T Consensus 250 ~~i~~~~~~~~~~i~~~i~~--~--~~~~~vvl~GGg-a~l--l~~~l~~~~~~~~~~~~~~~~P~~a~ 311 (320)
T 2zgy_A 250 EAMNEALRKLEQRVLNTLNE--F--SGYTHVMVIGGG-AEL--ICDAVKKHTQIRDERFFKTNNSQYDL 311 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--C--CCCCEEEEESTT-HHH--HHHHHHHTSCCCGGGEECCSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--h--cCCCeEEEECCh-HHH--HHHHHHHHhCCCCCceeeCCCcHHHH
Confidence 45556666665555554431 1 236899999998 764 88889999987 577666665443
No 392
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=53.03 E-value=11 Score=36.59 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.9
Q ss_pred ceEEEEEeCCceeEEEEEecCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g 25 (547)
+.+.+||+||.|+|..+++.+.
T Consensus 4 ~~~A~IDiGSNsirL~I~~~~~ 25 (315)
T 3mdq_A 4 QRIGVIDMGTNTFHLLITDIVN 25 (315)
T ss_dssp CEEEEEEECSSEEEEEEEEEET
T ss_pred ceEEEEEecCCcEEEEEEEEcC
Confidence 4578899999999999998653
No 393
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=52.99 E-value=6.3 Score=42.28 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCCceEEecch
Q psy224 288 LFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQ 348 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~ 348 (547)
+++.+++.+.-.+++.++...+....++.|+++||+ ++.+.+.+.+.+.++.++.....+
T Consensus 308 l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~-srip~v~~~l~~~fg~~~~~~~np 367 (605)
T 2kho_A 308 LVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQ-TRMPMVQKKVAEFFGKEPRKDVNP 367 (605)
T ss_dssp TCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGG-GGSHHHHHHHHHHHSSCCBCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCc-ccChHHHHHHHHhcCCCcCcCCCc
Confidence 333445555555555544211111227899999997 999999999999999887665554
No 394
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=52.31 E-value=29 Score=33.46 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.+|||+||+++|++..+.+|..
T Consensus 2 ~igiD~G~sntK~~~~~~~g~~ 23 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQWQESDGTI 23 (320)
T ss_dssp EEEEEECSSEEEEEEECSSSCE
T ss_pred eEEEecCCccceEEEecCCCEE
Confidence 6899999999999987777864
No 395
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=51.87 E-value=14 Score=29.10 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEeCCceeEEEEEecCCCe
Q psy224 6 VLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 6 ~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
+||||+|+..+=.++-|..+.+
T Consensus 3 iLglD~G~kriGvAvsd~~~~~ 24 (98)
T 1iv0_A 3 VGALDVGEARIGLAVGEEGVPL 24 (98)
T ss_dssp EEEEEESSSEEEEEEECSCCSS
T ss_pred EEEEEeCCCEEEEEEEeCCCCe
Confidence 8999999999999999998754
No 396
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=51.76 E-value=18 Score=39.90 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
++.++.+++.+.++-.+...+.. ..++.|+++|+++||. +.|..+++.+.+.+.
T Consensus 677 ~~~dIAasfQ~al~~~L~~~~~~-a~~~tg~~~VvLSGGV-a~N~~L~~~l~~~L~ 730 (772)
T 4g9i_A 677 SPADIAYSAHLALARAFAHTAVE-RAREFGVKNVALSGGV-AYNELITKMIRKVVE 730 (772)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCSCCCEESST-TCCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcCEEEEEchH-HHHHHHHHHHHHHHH
Confidence 67888888888888877777664 3566789999999997 999999999988764
No 397
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=50.59 E-value=14 Score=36.64 Aligned_cols=49 Identities=6% Similarity=-0.005 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 289 FVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 289 ~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
.+-++|..+|.++..+-.+ .... |++-|+.+||. . .+..+++.+.+-++
T Consensus 289 A~lA~d~f~yri~k~IGa~-aa~L~gvDaIVFTgGI-gEns~~iR~~i~~~l~ 339 (384)
T 3khy_A 289 AKLAIEIFSHRVAKFVASY-MIYFNKLDALVFTGGI-GENAANIRKNIISKLA 339 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGCSSCCEEEEEHHH-HHHCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECCcc-ccCcHHHHHHHHhhcc
Confidence 4567899999998887642 3333 59999999995 7 55778877766443
No 398
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=50.14 E-value=24 Score=29.20 Aligned_cols=64 Identities=5% Similarity=-0.034 Sum_probs=38.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--C--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--S--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
|..|+ .++||.|......|.+ .|+.+-.+..+ + .+.+.++.+.. +.++.-+....+...+.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~-------~gi~y~~~di~~~~~~~~el~~~l~~~-------~~~~~~l~n~~~~~~k~ 67 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEE-------HEIPFVERNIFSEPLSIDEIKQILRMT-------EDGTDEIISTRSKVFQK 67 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCEEEEETTTSCCCHHHHHHHHHTC-------SSCGGGTBCTTSHHHHH
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------cCCceEEEEccCCCccHHHHHHHHHHc-------CCCHHHhhcCCchHHHh
Confidence 34455 8999999877665553 46665555553 2 24556666543 55555555556666666
Q ss_pred hCC
Q psy224 464 YGV 466 (547)
Q Consensus 464 ~~v 466 (547)
.+.
T Consensus 68 l~~ 70 (132)
T 1z3e_A 68 LNV 70 (132)
T ss_dssp HCC
T ss_pred cCc
Confidence 664
No 399
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=50.08 E-value=27 Score=36.95 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcEEEeeCCchhhcHHHHHHHHHHhCC-ceEEe
Q psy224 285 VTKLFVALCEGIINNIHDIMNRSVLHRSGINRIIGIGSCLTRNHILQHYIERIYGL-QLIVE 345 (547)
Q Consensus 285 ~~~l~ra~~Egia~~~~~~~~~~~l~~~g~~~I~~~GG~~~k~~~~~q~~Ad~l~~-~v~~~ 345 (547)
..++.+++.+.++-.+...... ..++.|+++|.++||. +.|..+++.+.+..+. .+.++
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~-a~~~tg~~~l~LaGGV-a~N~~L~~~l~~~~~~~~v~vp 339 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADS-VLARTGERTLFVAGGV-GLNATMNGKLLTRSTVDKMFVP 339 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEESGG-GGCHHHHHHHHTSTTCSEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeEEecchH-HHHHHHHHHHHHhcCCCeEEeC
Confidence 6889998888888888877764 4566789999999997 9999999988876554 44444
No 400
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=49.89 E-value=25 Score=31.70 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=34.6
Q ss_pred eccCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHH-HHh-hCCcEEEEEeC
Q psy224 378 KLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAE-EFK-KINTQVIACST 426 (547)
Q Consensus 378 ~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~-~~~-~~~~~vi~is~ 426 (547)
.+-.-.++++|+.|+ -.-||+|....+.+....+ +|- .-.++++....
T Consensus 9 ~~G~~~a~vtivef~-D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~ 58 (205)
T 3gmf_A 9 LLGNPAAKLRLVEFV-SYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF 58 (205)
T ss_dssp EESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred eecCCCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence 344446789999999 9999999999888766555 673 33467765544
No 401
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=49.49 E-value=16 Score=33.48 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=33.2
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHhh-CCcEEEEEeC
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAF-SDRAEEFKK-INTQVIACST 426 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~~-~~~~vi~is~ 426 (547)
-.++++|+.|+ -..||+|....+.+ .++.++|-+ -+++++....
T Consensus 37 ~~A~vtIvef~-Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~ 82 (226)
T 3f4s_A 37 PKAPILMIEYA-SLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHF 82 (226)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEEC
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeC
Confidence 35688899999 99999999988864 677778853 3466666544
No 402
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=49.34 E-value=18 Score=30.50 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
..+||||+|+..+=.++-|..+..
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~~~ 26 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRITGT 26 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTTTE
T ss_pred CeEEEEEeCCCEEEEEEEcCCCCE
Confidence 458999999999999999998765
No 403
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=48.69 E-value=2.1e+02 Score=30.65 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=76.8
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-C--CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHh----------h------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-K--GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK----------K------ 416 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~--gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~----------~------ 416 (547)
.+|..+|++.+....+| +++++-++ + |+++||.|- ..-. .......+.++.+.+. .
T Consensus 480 ~~G~r~p~~~~~~~~~g--~~~~l~~~l~~~g~~~ll~~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 554 (665)
T 1pn0_A 480 VVGTRFKSQPVVRHSEG--LWMHFGDRLVTDGRFRIIVFA-GKAT--DATQMSRIKKFAAYLDSENSVISRYTPKGADRN 554 (665)
T ss_dssp CTTSBCCCCEEEETTTT--EEEEGGGGCCCSSCEEEEEEE-ECTT--SHHHHHHHHHHHHHHHSTTSHHHHHSBTTSCTT
T ss_pred CCcCCCCCCeEEecCCC--cEEEHhHhhccCCCEEEEEec-CCcc--cchhHHHHHHHHHHhhccccHHhhcCCcccCcc
Confidence 48999999998652367 57888774 3 689998886 3221 1122334444444442 1
Q ss_pred CCcEEEEEeCCChhh--HHHHhhccccCCCCCCcc-eeeecC------CChHHHHHhCCcccCCCcceeEEEEEcCCCcE
Q psy224 417 INTQVIACSTDSHFS--HLAWCNIPRNKGGLGDMA-IPILSD------KSMSIARSYGVLNEETGIPYRGLFIIDDKQNL 487 (547)
Q Consensus 417 ~~~~vi~is~d~~~~--~~~~~~~~~~~~~~~~~~-fp~l~D------~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v 487 (547)
.-++++.|...+... ...+.+ ..++. +.. ..++.| .+..+.+.||+... .-..+||=|||-|
T Consensus 555 ~~~~~~~i~~~~~~~~~~~~~p~---~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~-----~g~~vlvRPD~yV 625 (665)
T 1pn0_A 555 SRIDVITIHSCHRDDIEMHDFPA---PALHP-KWQYDFIYADCDSWHHPHPKSYQAWGVDET-----KGAVVVVRPDGYT 625 (665)
T ss_dssp SSEEEEEEESSCTTSCCGGGSCT---TTTSC-TTCCSSEEECSCCSSSCCCCHHHHHTBCTT-----TCEEEEECTTSBE
T ss_pred ceeEEEEEecCCCCccchhhCCH---HHcCc-ccchheEeecCcccccccccHHHHcCCCCC-----CceEEEECCCCcE
Confidence 127777775443222 111111 01111 112 234555 24668899998621 2467899999999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHhh
Q psy224 488 RQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 488 ~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
-.+. ... +.+++.+.+..+
T Consensus 626 ~~~~--~~~---~~~~l~~~~~~~ 644 (665)
T 1pn0_A 626 SLVT--DLE---GTAEIDRYFSGI 644 (665)
T ss_dssp EEEE--CTT---THHHHHHHHHTT
T ss_pred EEEe--ccc---cHHHHHHHHHHH
Confidence 8876 222 355666665554
No 404
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=48.42 E-value=10 Score=28.39 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCCCeEEEEEEeCCCCCCc------HHHHHHHHHHHHHHhh
Q psy224 381 QYKGQYVVLFFYPLDFTFVC------PTEIIAFSDRAEEFKK 416 (547)
Q Consensus 381 ~~~gk~~ll~f~~~~~cp~C------~~~~~~l~~~~~~~~~ 416 (547)
+++|+.++|.-.|+.+|+.| ..++..+.++.++|++
T Consensus 23 ~~~G~~~~I~~Vp~~~C~~CGE~~~~~e~~~~~~~~~~~f~~ 64 (78)
T 3ga8_A 23 TFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRA 64 (78)
T ss_dssp EETTEEEEEEEEEEEEETTTCCEECCHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEcCceeEECCCCCCEEECHHHHHHHHHHHHHHHH
Confidence 56898888888889999999 5667778888888864
No 405
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=47.72 E-value=6.3 Score=22.42 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=8.3
Q ss_pred CccccCCccC
Q psy224 518 GEVCPAGWKP 527 (547)
Q Consensus 518 ~~~~~~~w~~ 527 (547)
|+-||..||-
T Consensus 1 gircpkswkc 10 (30)
T 2l3i_A 1 GIRCPKSWKC 10 (30)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCcchhH
Confidence 5789999974
No 406
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=47.57 E-value=12 Score=37.01 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.4
Q ss_pred CceEEEEEeCCceeEEEEEecC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~ 24 (547)
++.+.+||+||.|+|..+++.+
T Consensus 15 ~~~~A~IDiGSNsiRL~I~~~~ 36 (343)
T 3cer_A 15 SVTVAGIDCGTNSIRLKIARVD 36 (343)
T ss_dssp CEEEEEEEECSSCEEEEEEEEE
T ss_pred CCeEEEEEcccceeEeEEEEEc
Confidence 4678999999999999999864
No 407
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=47.06 E-value=4.5 Score=43.39 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=17.5
Q ss_pred eEEEEEeCCceeEEEEEecCCC
Q psy224 5 VVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
.++|||+|||++.+++++ +|+
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~ 23 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMD-GTT 23 (605)
T ss_dssp -CEEEECCSSEEEEEEEE-TTE
T ss_pred CEEEEEcCCcCEEEEEEE-CCE
Confidence 589999999999999986 454
No 408
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=45.69 E-value=13 Score=36.22 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceEEEEEeCCceeEEEEEecCCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTR 26 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~ 26 (547)
+.+.+||+||.|+|..+++.++.
T Consensus 12 m~~a~IDiGSns~rl~I~~~~~~ 34 (315)
T 1t6c_A 12 MRVASIDIGSYSVRLTIAQIKDG 34 (315)
T ss_dssp EEEEEEEECSSEEEEEEEEEETT
T ss_pred cEEEEEEECcCcEEEEEEEEcCC
Confidence 46889999999999999997543
No 409
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=45.35 E-value=17 Score=36.76 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-------CCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHRS-------GINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~~-------g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
+-.+-++|..+|.++..+-.+ ...+ +++-|+.+||.-.++..+++.+.+-++
T Consensus 320 ~~A~lA~d~f~yri~k~IGa~-aa~L~~~~~~G~vDaIVFTGGIGEns~~iR~~i~~~l~ 378 (438)
T 4h0p_A 320 EKAKLTYAVFLDRLLNFVAQY-LFKLLSEVPIESIDGLVFSGGIGEKGAELRRDVLKKLA 378 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCGGGSCEEEEEHHHHHHCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCccccCCCCCEEEECCccccCcHHHHHHHHHhHh
Confidence 346678899999998887642 2222 489999999941488888887776554
No 410
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=42.73 E-value=35 Score=29.38 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEEeCCceeEEEEEecCCCe
Q psy224 5 VVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
.+||||-|++++-.++++.+|+.
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~~ 24 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQ 24 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTE
T ss_pred EEEEEccCCCCeeEEEEEecCCe
Confidence 58999999999999999988864
No 411
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=42.49 E-value=43 Score=32.71 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=25.8
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccc
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKD 35 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~ 35 (547)
|++|++||||-.+...-++|++ ++++ ++.....
T Consensus 3 ~~~M~iLgIdts~~~~svAl~~-~~~i-~~~~~~~ 35 (334)
T 3eno_A 3 MDPMIVLGLEGTAHTISCGIID-ESRI-LAMESSM 35 (334)
T ss_dssp CCCCEEEEEECSSSEEEEEEEE-SSCC-CEEEEEE
T ss_pred ccCceEEEEECCCcCeEEEEEE-CCEE-EEEEEEe
Confidence 7778999999999899999998 4566 6654433
No 412
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=42.42 E-value=38 Score=35.39 Aligned_cols=59 Identities=24% Similarity=0.181 Sum_probs=40.8
Q ss_pred CceEEEEEeCCceeEEEEEecC--CCe-eecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN--TRE-ELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILRLP 70 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~--g~~-~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~~d 70 (547)
|+++.|||||.+++-++|-+.+ |++ .+++...++. .--...++..-+.+++.+++....
T Consensus 1 m~~i~gvdign~tte~~la~~~~~~~~~f~~s~~~~tt---------g~kgt~~n~~g~~~~l~~~~~~~~ 62 (610)
T 2d0o_A 1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETT---------GIKGTLRNVFGIQEALALVARGAG 62 (610)
T ss_dssp CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECC---------SSTTSTTHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEecCCcchheeeeeecCCCceEEeeccccccC---------CccCcHHHHHHHHHHHHHHHHHcC
Confidence 5799999999988888876543 543 3566655552 222356788889999988876543
No 413
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=42.37 E-value=16 Score=36.08 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.1
Q ss_pred CceEEEEEeCCceeEEEEEecC
Q psy224 3 SQVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 3 ~~~~lgIDiGTtsiK~~l~d~~ 24 (547)
.++++.||+||+++|..|++.+
T Consensus 2 ~~~~avID~GSns~Rl~I~~~~ 23 (353)
T 3aap_A 2 HSCIAVIDAGSTGSRLHIYSYD 23 (353)
T ss_dssp CEEEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEEcCCCCeEEEEEEEc
Confidence 3578999999999999999853
No 414
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=42.02 E-value=2.4e+02 Score=29.93 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=70.3
Q ss_pred ccCCCCCCeeeccccCCceeeEeccCC-C--CCeEEEEEEeCCCCCCcH-HHHHHHHHHH--------HHHhhC------
Q psy224 356 ALEKPAPEFEGQAVVNGQFKNIKLSQY-K--GQYVVLFFYPLDFTFVCP-TEIIAFSDRA--------EEFKKI------ 417 (547)
Q Consensus 356 ~~g~~~p~~~l~~~~~G~~~~~~l~~~-~--gk~~ll~f~~~~~cp~C~-~~~~~l~~~~--------~~~~~~------ 417 (547)
.+|..+|++.+....+| +++++-++ + |+++||.|- ..-.+.+. ..+..+.+.. ..|...
T Consensus 468 ~~G~r~p~~~~~~~~~g--~~~~l~~~~~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 544 (639)
T 2dkh_A 468 TVGMRFHSAPVVRVCDA--KPVQLGHCGKADGRWRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRRFTPAGQDIDS 544 (639)
T ss_dssp CTTSBCCCCEEEETTTC--CEEEGGGGCCSSSCEEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHHHSCTTSCTTS
T ss_pred CCcCCCCCCeEEecCCC--CEEEHHHhhccCCCEEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHhcCCCCCCcCc
Confidence 38999999988652367 57888774 3 689999876 44344443 3344444332 234221
Q ss_pred CcEEEEEeCCChhh--HHHHhhccccCCCCCCc-c-eeeecCC---C-hHHHHHhCCcccCCCcceeEEEEEcCCCcEEE
Q psy224 418 NTQVIACSTDSHFS--HLAWCNIPRNKGGLGDM-A-IPILSDK---S-MSIARSYGVLNEETGIPYRGLFIIDDKQNLRQ 489 (547)
Q Consensus 418 ~~~vi~is~d~~~~--~~~~~~~~~~~~~~~~~-~-fp~l~D~---~-~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~ 489 (547)
=++++.|...+..+ +..+...++..-...++ . ..++.|. + ..+.+.||+..+ .-..+||=|||-|-.
T Consensus 545 ~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~-----~g~~v~vRPD~yv~~ 619 (639)
T 2dkh_A 545 IFDLRAVFPQAYTEVALETLPALLLPPKGQLGMIDYEKVFSPDLKNAGQDIFELRGIDRQ-----QGALVVVRPDQYVAQ 619 (639)
T ss_dssp SEEEEEECSSCGGGCCGGGSCGGGSCEETTTTEECCCSEEECCCSSTTCCHHHHTTBCTT-----TCEEEEECTTSBEEE
T ss_pred eEEEEEEecCCCCccchhhCcHhhCCcccccccccceeEEeCCCcccccchHHHhCCCCC-----ceEEEEECCCCceEE
Confidence 25777775443211 11221111100000122 2 2455562 1 468889997521 356789999999987
Q ss_pred EE
Q psy224 490 IT 491 (547)
Q Consensus 490 ~~ 491 (547)
+.
T Consensus 620 ~~ 621 (639)
T 2dkh_A 620 VL 621 (639)
T ss_dssp EE
T ss_pred ee
Confidence 76
No 415
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=41.69 E-value=23 Score=35.26 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchhhc-HHHHHHHHH
Q psy224 288 LFVALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLTRN-HILQHYIER 336 (547)
Q Consensus 288 l~ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~k~-~~~~q~~Ad 336 (547)
-.+-++|..+|.++..+-.+ .... +++.|+++||. +.| ..+++.+.+
T Consensus 289 ~A~lA~d~f~yri~k~Iga~-aa~Lg~vDaIVfTGGI-gens~~vR~~i~~ 337 (391)
T 3r9p_A 289 AAQLAYSVFTHRLRKYIGAY-LAVLGHTDVISFTAGI-GENDAAVRRDAVS 337 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHSSCCEEEEEHHH-HHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECccc-ccCCHHHHHHHHH
Confidence 35668889999998877642 2334 59999999995 764 667776654
No 416
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.47 E-value=3 Score=24.68 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhh
Q psy224 396 FTFVCPTEIIAFSDRAEEFKK 416 (547)
Q Consensus 396 ~cp~C~~~~~~l~~~~~~~~~ 416 (547)
-||.|..++|.++.+..-|.+
T Consensus 5 ~CpvCk~q~Pd~kt~~~H~e~ 25 (28)
T 2jvx_A 5 CCPKCQYQAPDMDTLQIHVME 25 (28)
T ss_dssp ECTTSSCEESSHHHHHHHHHH
T ss_pred cCccccccCcChHHHHHHHHH
Confidence 499999999999988877764
No 417
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=41.40 E-value=46 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=35.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhh
Q psy224 382 YKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCN 437 (547)
Q Consensus 382 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 437 (547)
|+|.++||++-.-. . -..+.++.+.+++.|+.++||.....+..++...
T Consensus 45 F~~aPVVlDl~~l~-~------~~dl~~L~~~l~~~gl~~vGV~g~~~~~~~~~a~ 93 (120)
T 3ghf_A 45 LKHAPVVINVSGLE-S------PVNWPELHKIVTSTGLRIIGVSGCKDASLKVEID 93 (120)
T ss_dssp HTTCEEEEEEEECC-S------SCCHHHHHHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred hCCCcEEEEccccC-C------hHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHH
Confidence 58899999987332 1 1346777788888899999999866554555555
No 418
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=41.21 E-value=16 Score=37.62 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=18.7
Q ss_pred ceEEEEEeCCceeEEEEEecC
Q psy224 4 QVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~ 24 (547)
+|.+.||+||+++|..|++.+
T Consensus 34 ~y~~vID~GSns~Rl~Vy~~~ 54 (456)
T 3cj1_A 34 KYGIVLDAGSSHTSMFVYKWP 54 (456)
T ss_dssp EEEEEEEECSSCEEEEEEEEE
T ss_pred eEEEEEEcCCCCeEEEEEEEc
Confidence 588899999999999999853
No 419
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=41.07 E-value=7.6 Score=35.94 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=11.3
Q ss_pred EEEEeCCcee--------EEEEEecCCCeeec
Q psy224 7 LGIDIGTTSV--------KVCLIDANTREELS 30 (547)
Q Consensus 7 lgIDiGTtsi--------K~~l~d~~g~~~l~ 30 (547)
=|+|+||.++ |+++||-+|.+ +.
T Consensus 9 ~~~~~~~~~~~~~~~~MIKaViFDlDGTL-vD 39 (250)
T 4gib_A 9 SGVDLGTENLYFQSNAMIEAFIFDLDGVI-TD 39 (250)
T ss_dssp ---------------CCCCEEEECTBTTT-BC
T ss_pred ccccCCCCCcccCccchhheeeecCCCcc-cC
Confidence 4899999987 89999999987 54
No 420
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=41.04 E-value=11 Score=31.73 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=15.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy224 395 DFTFVCPTEIIAFSDRAEEFKKINTQVIACST 426 (547)
Q Consensus 395 ~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~ 426 (547)
.|||.|......|.+ .|+.+..+..
T Consensus 48 ~~Cp~C~~ak~~L~~-------~gv~y~~vdI 72 (135)
T 2wci_A 48 PSCGFSAQAVQALAA-------CGERFAYVDI 72 (135)
T ss_dssp BSSHHHHHHHHHHHT-------TCSCCEEEEG
T ss_pred CCCccHHHHHHHHHH-------cCCceEEEEC
Confidence 799999876655543 3555444444
No 421
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=40.91 E-value=15 Score=36.32 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchhhcHH--HHHHHHHHh
Q psy224 284 GVTKLFVALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLTRNHI--LQHYIERIY 338 (547)
Q Consensus 284 ~~~~l~ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~k~~~--~~q~~Ad~l 338 (547)
+..++++..++-++-.+...+.. .+.+.. ++.|+++||| |.-.. +.+.+.+.+
T Consensus 261 di~~~i~~a~~~~~~~I~~~i~~-~l~~~~~~~~Ivl~GGG-a~l~~~~l~~~i~~~~ 316 (355)
T 3js6_A 261 DFKDEFYKEQDSLIEEVMSNFEI-TVGNINSIDRIIVTGGG-ANIHFDSLSHYYSDVF 316 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-HTCCTTSCSEEEEESTT-HHHHHHHHHHHSSSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HhhchhhccEEEEECcc-hhcchhhHHHHHHHHC
Confidence 45566666666665555555443 343322 6899999999 66433 334444433
No 422
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=40.50 E-value=24 Score=35.44 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhc-CCcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 290 VALCEGIINNIHDIMNRSVLHRS-GINRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~-g~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
+-+++..+|.++..+-.+ ...+ |++-|+.+||. . ++..+++.+.+-++
T Consensus 299 ~lA~d~f~yri~k~IGa~-~a~LggvDaIVFTgGI-GEns~~vR~~i~~~l~ 348 (403)
T 2iir_A 299 KLVLEIYDYRIAKYIGAY-AAAMNGVDAIVFTAGV-GENSPITREDVCSYLE 348 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHTCCSEEEEEHHH-HTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECccc-ccCCHHHHHHHHhhhh
Confidence 348888999998877642 3333 59999999995 8 88888888877554
No 423
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=40.23 E-value=1.6e+02 Score=24.53 Aligned_cols=61 Identities=5% Similarity=0.103 Sum_probs=38.4
Q ss_pred eeeecCCChHHHHHhCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy224 450 IPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAF 511 (547)
Q Consensus 450 fp~l~D~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~~l 511 (547)
..++...|++...+..-++....-+.|+..|+ |||++++-.-...-.+++.++|.+.|+..
T Consensus 82 vTVFAGqDkEAt~~aR~yf~~~pPSSPS~ALf-KdGelVh~ieRh~IEGr~a~~Ia~~L~~a 142 (147)
T 3fhk_A 82 VTVFAGQDKEATAKMREYFTGAAPSSPSMALL-KGKEVVHFIPRHEIEGHDMEEIMKNLTAA 142 (147)
T ss_dssp EEEETTTSHHHHHHHHTTSTTCCCCSSEEEEE-ETTEEEEEECGGGTTTSCHHHHHHHHHHH
T ss_pred EEeccCCCHHHHHHHHHhcCCCCCCCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 45566666554444332322222246889999 79999988744444677888888877653
No 424
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=40.17 E-value=26 Score=35.26 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchh-hcHHHHHHHHHHhC
Q psy224 290 VALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLT-RNHILQHYIERIYG 339 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~-k~~~~~q~~Ad~l~ 339 (547)
+-++|..+|.++..+-.+ ...+| ++-|+.+||. . ++..+++.+.+-++
T Consensus 307 ~lA~d~f~yri~k~IGa~-aa~LggvDaIVFTgGI-GEns~~vR~~i~~~l~ 356 (415)
T 2e1z_A 307 RLAIKTFVHRIARHIAGH-AASLHRLDGIIFTGGI-GENSVLIRQLVIEHLG 356 (415)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCSSCCEEEEEHHH-HHHCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCEEEECccc-cccCHHHHHHHHhhHh
Confidence 348889999999888752 33444 9999999995 8 88888888877554
No 425
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=39.73 E-value=34 Score=27.82 Aligned_cols=14 Identities=7% Similarity=-0.147 Sum_probs=10.7
Q ss_pred CCCCcHHHHHHHHH
Q psy224 396 FTFVCPTEIIAFSD 409 (547)
Q Consensus 396 ~cp~C~~~~~~l~~ 409 (547)
|||+|.....-|.+
T Consensus 30 ~Cp~C~~ak~lL~~ 43 (121)
T 3gx8_A 30 KCGFSRATIGLLGN 43 (121)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 99999887665554
No 426
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=39.46 E-value=20 Score=29.17 Aligned_cols=63 Identities=3% Similarity=-0.018 Sum_probs=38.5
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
.+|..++||.|+....-|. ++|+.+-.+.. ++ .+.+.++.+.. +.++.-+....+...+..+
T Consensus 3 ~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~l~~~-------~~~~~~l~n~~~~~~k~l~ 68 (120)
T 3l78_A 3 TLFLSPSCTSCRKARAWLN-------RHDVVFQEHNIMTSPLSRDELLKILSYT-------ENGTEDIISTRSKVFQKLD 68 (120)
T ss_dssp EEEECSSCHHHHHHHHHHH-------HTTCCEEEEETTTSCCCHHHHHHHHHHC-------SSTHHHHBCTTCHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCcHHHHHHHHhhc-------CCCHHHhhcCCcHHHHHcC
Confidence 3444899999988765544 44666655554 32 45666777654 5555555555566666665
Q ss_pred C
Q psy224 466 V 466 (547)
Q Consensus 466 v 466 (547)
.
T Consensus 69 ~ 69 (120)
T 3l78_A 69 I 69 (120)
T ss_dssp C
T ss_pred C
Confidence 4
No 427
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=39.35 E-value=62 Score=31.34 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcC---CcEEEeeCCchhhcHHHHHHHHHHhCCceEEecchhhhh
Q psy224 286 TKLFVALCEGIINNIHDIMNRSVLHRSG---INRIIGIGSCLTRNHILQHYIERIYGLQLIVEQDQAMRD 352 (547)
Q Consensus 286 ~~l~ra~~Egia~~~~~~~~~~~l~~~g---~~~I~~~GG~~~k~~~~~q~~Ad~l~~~v~~~~~~~~~~ 352 (547)
.+.++.+++-++-.+...+.. . +.. ++.|+++||| |.- +.+.+.+.++.++.+.+++....
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~--~-~~~~~~~~~IvltGGG-A~l--~~~~l~~~~~~~v~v~~~P~~a~ 314 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEK--R-GFKLDQLDSLIFIGGT-TQK--LKEQISKTYPNNSIITNNSQWTT 314 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHH--H-TCCTTSCSEEEEESTT-HHH--HHHHHHHHSTTCEECCSSGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--c-CCCHHHccEEEEECCh-HHH--HHHHHHHHcCCCCEecCCChhhH
Confidence 455555555555555554442 2 222 5799999999 764 56899999998888887776544
No 428
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=38.79 E-value=32 Score=28.01 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=39.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHh
Q psy224 389 LFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464 (547)
Q Consensus 389 l~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~ 464 (547)
+.+|..++|+.|+....-|. ++|+.+-.+.. ++ .+++.++.++. +.++.-+....+...+.+
T Consensus 5 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~eL~~~l~~~-------g~~~~~l~n~~~~~~k~l 70 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAELD-------DLAWDYDAIDIKKNPPAASLIRNWLENS-------GLELKKFFNTSGQSYRAL 70 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHH-------HHTCCEEEEETTTSCCCHHHHHHHHHHS-------CCCGGGGBCTTSHHHHHT
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCceEEEEeccCchhHHHHHHHHHHc-------CCCHHHHhCCCCcchhhc
Confidence 34454899999988766554 33555555543 43 45667777765 666555555566666666
Q ss_pred CC
Q psy224 465 GV 466 (547)
Q Consensus 465 ~v 466 (547)
+.
T Consensus 71 ~l 72 (120)
T 3fz4_A 71 GL 72 (120)
T ss_dssp TH
T ss_pred Cc
Confidence 54
No 429
>4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica}
Probab=38.46 E-value=23 Score=35.42 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh-cCCcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 287 KLFVALCEGIINNIHDIMNRSVLHR-SGINRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 287 ~l~ra~~Egia~~~~~~~~~~~l~~-~g~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
+-.+-+++..+|.++..+-.+ ... .|++-|+.+||.-..+..+++.+.+-++
T Consensus 300 ~~A~lA~d~f~yri~k~IGa~-aa~L~GvDaIVFTgGIGEns~~vR~~i~~~l~ 352 (404)
T 4h0o_A 300 KTCQLAFDVYIKQLAKTIGGL-MVEIGGLDLLVFTDQMGLEVWQVRKAICDKMK 352 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTCCSEEEEEHHHHHHCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 445668899999998887642 233 3599999999941366888887776543
No 430
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.39 E-value=15 Score=29.46 Aligned_cols=15 Identities=0% Similarity=-0.221 Sum_probs=11.5
Q ss_pred CCCCCcHHHHHHHHH
Q psy224 395 DFTFVCPTEIIAFSD 409 (547)
Q Consensus 395 ~~cp~C~~~~~~l~~ 409 (547)
++||.|.....-|.+
T Consensus 29 ~~Cp~C~~ak~~L~~ 43 (111)
T 3zyw_A 29 PRCGFSKQMVEILHK 43 (111)
T ss_dssp BSSHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHH
Confidence 899999887665553
No 431
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=37.68 E-value=14 Score=30.65 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=16.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHH
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSD 409 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~ 409 (547)
|+.|. .+|||+|.....-|.+
T Consensus 16 Vvvys-k~~Cp~C~~ak~lL~~ 36 (127)
T 3l4n_A 16 IIIFS-KSTCSYSKGMKELLEN 36 (127)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH
T ss_pred EEEEE-cCCCccHHHHHHHHHH
Confidence 66677 8999999887766665
No 432
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=37.24 E-value=66 Score=33.61 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=39.6
Q ss_pred CCCceEEEEEeCCceeEEEEEecCCCeeecccccccccCCCCcCCCCCCccccCHHHHHHHHHHHHhh
Q psy224 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNCILR 68 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~~~~~p~~~~~~~g~~e~d~~~~~~~~~~~i~~ 68 (547)
|++|++||||-.+..+.++|++.++++ ++.........+-. ..|+ -...+..+.+...+..++..
T Consensus 3 m~~m~iL~i~ts~~~~~~al~~~~~~~-~~~~~~~~~~~~gg-~~p~-~a~~~h~~~l~~~i~~~l~~ 67 (540)
T 3en9_A 3 MDPMICLGLEGTAEKTGVGIVTSDGEV-LFNKTIMYKPPKQG-INPR-EAADHHAETFPKLIKEAFEV 67 (540)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTSCE-EEEEEEECCCCCSS-SSCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEEcCccceEEEEEECCCeE-EEEEEEeecCCCCC-CChH-HHHHHHHHHHHHHHHHHHHh
Confidence 666899999999999999999987776 76665443211100 0001 11234455555566666665
No 433
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=36.99 E-value=26 Score=28.52 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=39.0
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhC
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG 465 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~ 465 (547)
.+|..++|+.|+....-|. ++|+.+-.+.. ++ .+++.+|.+.. ++++.-+....+...+.++
T Consensus 7 ~iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~~~~~~~~eL~~~l~~~-------g~~~~~l~n~~~~~~k~l~ 72 (120)
T 3gkx_A 7 LFLQYPACSTCQKAKKWLI-------ENNIEYTNRLIVDDNPTVEELKAWIPLS-------GLPVKKFFNTSGVVYKELK 72 (120)
T ss_dssp EEEECTTCHHHHHHHHHHH-------HTTCCCEEEETTTTCCCHHHHHHHHHHH-------TSCGGGGBCTTSHHHHHTT
T ss_pred EEEECCCChHHHHHHHHHH-------HcCCceEEEecccCcCCHHHHHHHHHHc-------CCCHHHeEeCCCchhhhcC
Confidence 3444899999988766554 34655444443 43 46677777765 6665555555566666665
Q ss_pred C
Q psy224 466 V 466 (547)
Q Consensus 466 v 466 (547)
.
T Consensus 73 l 73 (120)
T 3gkx_A 73 L 73 (120)
T ss_dssp H
T ss_pred c
Confidence 3
No 434
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=36.13 E-value=18 Score=35.49 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.3
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhC
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYG 339 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~ 339 (547)
++.|+++||| ++- +.+.+.+.++
T Consensus 297 i~~IvL~GGg-a~l--l~~~l~~~~~ 319 (346)
T 2fsj_A 297 VTSLIPVGGG-SNL--IGDRFEEIAP 319 (346)
T ss_dssp EEEEEEESTT-HHH--HGGGGGGGST
T ss_pred ccEEEEECCc-HHH--HHHHHHHHCc
Confidence 6899999998 775 6677777775
No 435
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=34.28 E-value=22 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.3
Q ss_pred CCCceEEEEEeCCceeEEEEE
Q psy224 1 MSSQVVLGIDIGTTSVKVCLI 21 (547)
Q Consensus 1 M~~~~~lgIDiGTtsiK~~l~ 21 (547)
|+.+.++|||+|.+++|++.-
T Consensus 4 ~~~~~iigiD~G~~~~K~~~~ 24 (329)
T 4apw_A 4 ITNEYVMTLDAGKYETKLIGK 24 (329)
T ss_dssp -CCEEEEEEEECSSEEEEEEH
T ss_pred ccCceEEEEecCCceEEEEec
Confidence 445789999999999999963
No 436
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=32.94 E-value=38 Score=34.03 Aligned_cols=47 Identities=4% Similarity=-0.061 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcC-CcEEEeeCCchh-hcHHHHHHHHHHh
Q psy224 290 VALCEGIINNIHDIMNRSVLHRSG-INRIIGIGSCLT-RNHILQHYIERIY 338 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~g-~~~I~~~GG~~~-k~~~~~q~~Ad~l 338 (547)
+-++|..+|.++..+-.+ ...+| ++-|+.+||. . ++..+++.+.+-+
T Consensus 299 ~lA~d~f~yri~k~IGa~-~a~LggvDaiVFTgGI-GEns~~vR~~i~~~l 347 (408)
T 1g99_A 299 ELALEIFAYKVKKFIGEY-SAVLNGADAVVFTAGI-GENSASIRKRILTGL 347 (408)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTTSCSEEEEEHHH-HHHCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhCCCCEEEECccc-cccCHHHHHHHHhhh
Confidence 348899999999888752 33444 9999999995 8 8888888777544
No 437
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=32.36 E-value=31 Score=28.02 Aligned_cols=14 Identities=0% Similarity=-0.285 Sum_probs=9.9
Q ss_pred CCCCcHHHHHHHHH
Q psy224 396 FTFVCPTEIIAFSD 409 (547)
Q Consensus 396 ~cp~C~~~~~~l~~ 409 (547)
+||+|......|++
T Consensus 34 ~Cp~C~~ak~lL~~ 47 (118)
T 2wem_A 34 QCGFSNAVVQILRL 47 (118)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 89999876655543
No 438
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=31.90 E-value=2e+02 Score=23.16 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=44.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 384 GQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 384 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
.+++||-|| .+||..|. +.+.+.++.+. .++|-... +.++++.
T Consensus 39 ~~v~VVGfF-~~~~~~~~---~~F~~~A~~~~-------------------------------d~~F~~t~--~~~v~~~ 81 (124)
T 2l4c_A 39 TEVAVIGFF-QDLEIPAV---PILHSMVQKFP-------------------------------GVSFGIST--DSEVLTH 81 (124)
T ss_dssp SSEEEEEEC-SCTTSTHH---HHHHHHHHHCT-------------------------------TSEEEEEC--CHHHHHH
T ss_pred CCCEEEEEE-CCCCChhH---HHHHHHHHhCC-------------------------------CceEEEEC--hHHHHHH
Confidence 578888888 89998883 34444444431 23333332 3667788
Q ss_pred hCCcccCCCcceeEEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQ 509 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~v~~~~~~~~~~~~~~~~il~~l~ 509 (547)
|++. .|+..|+.+-..-+..+.+......+.++|.+.++
T Consensus 82 ~~v~-------~~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~ 120 (124)
T 2l4c_A 82 YNIT-------GNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIE 120 (124)
T ss_dssp TTCC-------SSCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHH
T ss_pred cCCC-------CCeEEEEEcCCCCceeecCcccCCCCHHHHHHHHH
Confidence 8876 46777776532233334220000114566666554
No 439
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=31.24 E-value=23 Score=28.11 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=10.1
Q ss_pred CCCCcHHHHHHHHH
Q psy224 396 FTFVCPTEIIAFSD 409 (547)
Q Consensus 396 ~cp~C~~~~~~l~~ 409 (547)
+||+|......|.+
T Consensus 32 ~Cp~C~~ak~~L~~ 45 (109)
T 3ipz_A 32 MCGFSNTVVQILKN 45 (109)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHH
Confidence 89999877665554
No 440
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=30.76 E-value=1.3e+02 Score=29.08 Aligned_cols=92 Identities=7% Similarity=-0.065 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhh-CCcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHH----
Q psy224 387 VVLFFYPLDFTFVCPTEIIAFSDRAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA---- 461 (547)
Q Consensus 387 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~---- 461 (547)
.++.|. ..+|+.|....+.+.++.++|+. ..+.++-+..+. ...+.
T Consensus 248 ~~l~f~-~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~----------------------------~~~~~~~~~ 298 (350)
T 1sji_A 248 HIVAFA-ERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDD----------------------------FPLLVAYWE 298 (350)
T ss_dssp EEEEEC-CTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGG----------------------------CHHHHHHHH
T ss_pred EEEEEE-cCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchh----------------------------hHHHHHHHH
Confidence 344566 77888888888889999888873 334444443211 12233
Q ss_pred HHhCCcccCCCcceeEEEEEcCCCcEEEEE-ecCCCCCCCHHHHHHHHHhhH
Q psy224 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQIT-INDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 462 ~~~~v~~~~~g~~~p~~~lid~~G~v~~~~-~~~~~~~~~~~~il~~l~~l~ 512 (547)
+.||+.. ..|+..+++....-.+.. ..+.......+.+.+.++.+.
T Consensus 299 ~~~gi~~-----~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~ 345 (350)
T 1sji_A 299 KTFKIDL-----FKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVL 345 (350)
T ss_dssp HHCCSCT-----TSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHH
T ss_pred hhcCCCc-----cCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHh
Confidence 6788762 269999998733323322 111112335677878777765
No 441
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=28.56 E-value=23 Score=37.83 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcC--CcEEEeeCCchhhcHHHHHHHHHHhCC
Q psy224 290 VALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHILQHYIERIYGL 340 (547)
Q Consensus 290 ra~~Egia~~~~~~~~~~~l~~~g--~~~I~~~GG~~~k~~~~~q~~Ad~l~~ 340 (547)
.|++|||...... .+ ++++. ...|.++||| +|-+.+--++.|-+++
T Consensus 479 kAIi~SIt~a~~~-~d---~~k~~~~y~nilivGgg-ski~g~~~~L~dri~i 526 (655)
T 4am6_A 479 KAIVQSIANASIT-AD---VTRMNSFYSNILIVGGS-SKIPALDFILTDRINI 526 (655)
T ss_dssp HHHHHHHHHHHHT-SC---GGGHHHHHTCEEEESTT-CCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcc-cc---HHHHHHHhhcEEEEcCc-ccCccHHHHHHHHHHh
Confidence 5777777655543 23 33322 5799999999 9999999999887764
No 442
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=28.24 E-value=23 Score=35.72 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=22.6
Q ss_pred CcEEEeeCCchhhcHHHHHHHHHHhCCc
Q psy224 314 INRIIGIGSCLTRNHILQHYIERIYGLQ 341 (547)
Q Consensus 314 ~~~I~~~GG~~~k~~~~~q~~Ad~l~~~ 341 (547)
++.|+++||+ ++-+.+.+.+.+-++..
T Consensus 316 ~~~IvL~GG~-s~~pg~~~rl~~el~~~ 342 (418)
T 1k8k_A 316 YKNIVLSGGS-TMFRDFGRRLQRDLKRT 342 (418)
T ss_dssp HHCEEEESGG-GCSTTHHHHHHHHHHHH
T ss_pred HhceEEeCCc-cccccHHHHHHHHHHHh
Confidence 4689999998 99999999888776543
No 443
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=27.51 E-value=45 Score=32.44 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=23.5
Q ss_pred eEEEEEeCCceeEEEEEecCCCeeeccccccc
Q psy224 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDT 36 (547)
Q Consensus 5 ~~lgIDiGTtsiK~~l~d~~g~~~l~~~~~~~ 36 (547)
++||||.++..++++|++. |++ ++....++
T Consensus 2 ~iLgIdts~~~~~val~~~-g~i-~~~~~~~~ 31 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE-DKV-LANVFDTL 31 (330)
T ss_dssp CEEEEECSSSEEEEEEECS-SCE-EEEEEEEC
T ss_pred EEEEEEccCCCeEEEEEEC-CEE-EEEEEEEe
Confidence 6899999999999999974 466 66554443
No 444
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=25.86 E-value=32 Score=19.49 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.3
Q ss_pred eEEEEEcCCCcEEEEE
Q psy224 476 RGLFIIDDKQNLRQIT 491 (547)
Q Consensus 476 p~~~lid~~G~v~~~~ 491 (547)
.++.|+|++|+++...
T Consensus 5 ~ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADL 20 (26)
T ss_pred CCCEEEeCCCCEeeec
Confidence 3478999999999876
No 445
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=25.20 E-value=15 Score=29.65 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=59.2
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCChhhHHHHhhccccCCCCCCc--ceeeecCCChHHHH
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDM--AIPILSDKSMSIAR 462 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~~~~ 462 (547)
|.+|+-|. .+.|+.|...-..|.++.++| .++-|+.=+-+......+.+ +. .+.+ -..+.+
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY-----~ilrVNIlSfFsK~g~v~~l-------g~~~~y~l----Inn~~~ 64 (124)
T 2g2q_A 2 KNVLIIFG-KPYCSICENVSDAVEELKSEY-----DILHVDILSFFLKDGDSSML-------GDVKRGTL----IGNFAA 64 (124)
T ss_dssp CEEEEEEE-CTTCHHHHHHHHHHHTTTTTE-----EEEEEECCCCCCCTTGGGC------------CCTH----HHHHHH
T ss_pred CceEEEeC-CCccHHHHHHHHHHHHhhccc-----cEEEEEeeeeeccCCceeee-------eccchhhh----HHHHHH
Confidence 56788899 999999999888887776665 56665543322222222221 10 1111 146667
Q ss_pred HhCCcccCCCcceeEEEEEcC-CCcEEEEEecC------CCC-CCCHHHHHHHHHhhH
Q psy224 463 SYGVLNEETGIPYRGLFIIDD-KQNLRQITIND------LPV-GRSVDETLRLVQAFQ 512 (547)
Q Consensus 463 ~~~v~~~~~g~~~p~~~lid~-~G~v~~~~~~~------~~~-~~~~~~il~~l~~l~ 512 (547)
.++-. .-..|=.|+ +|++-+..+.. .+. .-+.+++++.++...
T Consensus 65 ~l~ne-------~v~lfKydp~s~qmA~V~i~k~~~la~id~~~v~~d~L~~~Ie~a~ 115 (124)
T 2g2q_A 65 HLSNY-------IVSIFKYNPQTKQMAFVDINKSLDFTKTDKSLVNLEILKSEIEKAT 115 (124)
T ss_dssp HGGGG-------CEEEEEEETTTTEEEECCCGGGBCTTCCSGGGBCHHHHHHHHHHCC
T ss_pred hhccc-------EEEEEEEcCCCCcEEEEehhHeeeeeecchhhccHHHHHHHHHhCC
Confidence 77633 455677774 46555554322 111 126788888877654
No 446
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=25.11 E-value=42 Score=34.26 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=18.6
Q ss_pred ceEEEEEeCCceeEEEEEecC
Q psy224 4 QVVLGIDIGTTSVKVCLIDAN 24 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~ 24 (547)
+|.+.||+|+|++|..|+..+
T Consensus 34 ~y~iviDaGSsgtRl~VY~~~ 54 (452)
T 3zx3_A 34 KYGIVLDAGSSHTNLYIYKWP 54 (452)
T ss_dssp EEEEEEEECSSCEEEEEEEEE
T ss_pred eEEEEEEcCCCCcEEEEEEEe
Confidence 578899999999999999754
No 447
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=24.84 E-value=75 Score=28.14 Aligned_cols=38 Identities=8% Similarity=-0.124 Sum_probs=26.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy224 386 YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS 425 (547)
Q Consensus 386 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is 425 (547)
+.|.+|+ -.-||.|....+.+.++.+ +.+.+++|.-..
T Consensus 8 ~~I~~f~-D~~CP~C~~~~~~~~~l~~-~~~~~v~v~~~~ 45 (216)
T 2in3_A 8 PVLWYIA-DPMCSWCWGFAPVIENIRQ-EYSAFLTVKIMP 45 (216)
T ss_dssp CEEEEEE-CTTCHHHHHHHHHHHHHHH-HHTTTCEEEEEE
T ss_pred eeEEEEE-CCCCchhhcchHHHHHHHh-cCCCCeEEEEee
Confidence 4556666 8899999977777888776 544456666554
No 448
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=24.65 E-value=1.4e+02 Score=24.30 Aligned_cols=39 Identities=3% Similarity=-0.148 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCCC
Q psy224 388 VLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDS 428 (547)
Q Consensus 388 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d~ 428 (547)
|..|. ++.||+|..--. =.+...-++.+|+.+--+..+.
T Consensus 2 V~vYt-t~~c~~c~~kk~-c~~aK~lL~~kgV~feEidI~~ 40 (121)
T 1u6t_A 2 IRVYI-ASSSGSTAIKKK-QQDVLGFLEANKIGFEEKDIAA 40 (121)
T ss_dssp EEEEE-CTTCSCHHHHHH-HHHHHHHHHHTTCCEEEEECTT
T ss_pred EEEEe-cCCCCCccchHH-HHHHHHHHHHCCCceEEEECCC
Confidence 44455 899999952211 1122223556687777776653
No 449
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=24.27 E-value=46 Score=27.90 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=37.1
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeCC--C--hhhHHHHhhccccCCCCCCcceeeecCCChHHHHHhCC
Q psy224 391 FYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTD--S--HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466 (547)
Q Consensus 391 f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~d--~--~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~~v 466 (547)
+|..++|+.|+....-|. ++|+.+-.+... + .+.+.++.++. +++..-+........+.++.
T Consensus 6 iY~~p~C~~crkak~~L~-------~~gi~~~~idi~~~~~~~~eL~~~~~~~-------g~p~~~l~n~~~~~yk~l~l 71 (141)
T 1s3c_A 6 IYHNPASGTSRNTLEMIR-------NSGTEPTIILYLENPPSRDELVKLIADM-------GISVRALLRKNVEPYEQLGL 71 (141)
T ss_dssp EECCTTCHHHHHHHHHHH-------HTTCCCEEECTTTSCCCHHHHHHHHHHH-------TSCHHHHBCSSSHHHHHTTT
T ss_pred EEECCCChHHHHHHHHHH-------HcCCCEEEEECCCCCccHHHHHHHhccc-------CCCHHHhccCCchhHHhcCC
Confidence 444899999987665444 356665555543 2 34556666654 55544444455666666654
Q ss_pred c
Q psy224 467 L 467 (547)
Q Consensus 467 ~ 467 (547)
.
T Consensus 72 ~ 72 (141)
T 1s3c_A 72 A 72 (141)
T ss_dssp T
T ss_pred c
Confidence 3
No 450
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=23.97 E-value=42 Score=27.31 Aligned_cols=64 Identities=3% Similarity=-0.140 Sum_probs=38.6
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEeC--CC--hhhHHHHhhccccCCCCCCc-ceeeecCCChHHHHHh
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACST--DS--HFSHLAWCNIPRNKGGLGDM-AIPILSDKSMSIARSY 464 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is~--d~--~~~~~~~~~~~~~~~~~~~~-~fp~l~D~~~~~~~~~ 464 (547)
.+|...+|+.|+....-| +++|+.+-.+.. ++ .+++.+|.+.. ++ +..-+....+...+.+
T Consensus 8 ~iY~~p~C~~c~ka~~~L-------~~~gi~~~~~di~~~~~~~~eL~~~l~~~-------g~~~~~~l~n~~~~~~k~l 73 (121)
T 3rdw_A 8 TIYHNPRCSKSRETLALV-------EQQGITPQVVLYLETPPSVDKLKELLQQL-------GFSDARQLMRTKEDLYKTL 73 (121)
T ss_dssp EEECCTTCHHHHHHHHHH-------HTTTCCCEEECTTTSCCCHHHHHHHHHHT-------TCSSGGGGBCTTSHHHHHT
T ss_pred EEEECCCCHHHHHHHHHH-------HHcCCCcEEEeeccCCCcHHHHHHHHHhc-------CCcCHHHHhcCCChhhhhc
Confidence 344488999998776544 345655555543 33 45667777755 54 4433455566666776
Q ss_pred CCc
Q psy224 465 GVL 467 (547)
Q Consensus 465 ~v~ 467 (547)
+..
T Consensus 74 ~l~ 76 (121)
T 3rdw_A 74 NLD 76 (121)
T ss_dssp TTT
T ss_pred Ccc
Confidence 654
No 451
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=22.71 E-value=31 Score=28.01 Aligned_cols=64 Identities=3% Similarity=-0.090 Sum_probs=38.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHhhCCcEEEEEe--CC--ChhhHHHHhhccccCCCCCCcc-eeeecCCChHHHHHh
Q psy224 390 FFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACS--TD--SHFSHLAWCNIPRNKGGLGDMA-IPILSDKSMSIARSY 464 (547)
Q Consensus 390 ~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vi~is--~d--~~~~~~~~~~~~~~~~~~~~~~-fp~l~D~~~~~~~~~ 464 (547)
.+|..+.|+.|+....-|.+ +|+.+-.+. .+ +.+++.+|.+.. +++ ..-+....+...+.+
T Consensus 7 ~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~~~~~t~~eL~~~l~~~-------g~~~~~~l~n~~~~~~k~l 72 (119)
T 3f0i_A 7 VIYHNPKCSKSRETLALLEN-------QGIAPQVIKYLETSPSVEELKRLYQQL-------GLNEVRAMMRCKEELYKEL 72 (119)
T ss_dssp EEECCTTCHHHHHHHHHHHH-------TTCCCEEECHHHHCCCHHHHHHHHHHH-------TCSSGGGGBCTTSHHHHHT
T ss_pred EEEECCCChHHHHHHHHHHH-------cCCceEEEEeccCcCcHHHHHHHHHHc-------CCccHHHHhcCCCchhhhc
Confidence 44558899999887765543 455444443 23 356777888765 554 434455566666776
Q ss_pred CCc
Q psy224 465 GVL 467 (547)
Q Consensus 465 ~v~ 467 (547)
+..
T Consensus 73 ~l~ 75 (119)
T 3f0i_A 73 NLG 75 (119)
T ss_dssp TTT
T ss_pred Ccc
Confidence 654
No 452
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=21.85 E-value=2.5e+02 Score=27.23 Aligned_cols=97 Identities=7% Similarity=-0.043 Sum_probs=59.0
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHhhC-CcEEEEEeCCChhhHHHHhhccccCCCCCCcceeeecCCChHHHHH
Q psy224 385 QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI-NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARS 463 (547)
Q Consensus 385 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 463 (547)
+..++.|+ ..+|+.|...+..|.++.++|+.+ .+.++-+..+. +.. .-+.+.+.
T Consensus 248 ~~~~~~f~-~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~------~~~------------------~l~~~~~~ 302 (367)
T 3us3_A 248 GIHIVAFA-EEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD------FPL------------------LVPYWEKT 302 (367)
T ss_dssp TEEEEEEC-CTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGG------CTT------------------THHHHHHH
T ss_pred CcEEEEEE-cCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCcc------chh------------------HHHHHHHh
Confidence 45566677 667777888888899999998865 36666554322 000 00123456
Q ss_pred hCCcccCCCcceeEEEEEcCCCc--EEEEEecCCCCCCCHHHHHHHHHhhH
Q psy224 464 YGVLNEETGIPYRGLFIIDDKQN--LRQITINDLPVGRSVDETLRLVQAFQ 512 (547)
Q Consensus 464 ~~v~~~~~g~~~p~~~lid~~G~--v~~~~~~~~~~~~~~~~il~~l~~l~ 512 (547)
||+.. ..|+..+++.... ..+.+ ...+..-..+.+.+.++.+.
T Consensus 303 fgl~~-----~~P~~~i~~~~~~~~~~y~~-~~~~~~~t~~~i~~F~~~~~ 347 (367)
T 3us3_A 303 FDIDL-----SAPQIGVVNVTDADSVWMEM-DDEEDLPSAEELEDWLEDVL 347 (367)
T ss_dssp HTCCT-----TSCEEEEEETTTCCEEECCC-CTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCC-----CCCeEEEEecccccceeecC-CcccccCCHHHHHHHHHHHH
Confidence 88762 3799999997654 22222 11112235788888888776
No 453
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=21.55 E-value=49 Score=32.34 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=17.1
Q ss_pred ceEEEEEeCCceeEEEEEecCCCe
Q psy224 4 QVVLGIDIGTTSVKVCLIDANTRE 27 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g~~ 27 (547)
|..+|||+||+++|+.. .+|.+
T Consensus 21 m~~igiDlG~~~tkv~~--~~g~~ 42 (346)
T 2fsj_A 21 MVVVGLDVGYGDTKVIG--VDGKR 42 (346)
T ss_dssp CEEEEEEECSSEEEEEC--GGGCE
T ss_pred eEEEEEecCCcceeEEe--cCCCE
Confidence 45799999999999884 44544
No 454
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=21.18 E-value=73 Score=23.72 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=25.4
Q ss_pred cHHHHHhcCCCCCCCCCCCcccCCccceeecccccCCCCCCeE
Q psy224 123 NEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPI 165 (547)
Q Consensus 123 ~~~ll~~~g~~i~~~~Lp~i~~~~~~~G~v~~~~~Gl~~g~~V 165 (547)
-+++|+.+ ++.+.+||.+....-++-. +|++.|-.|
T Consensus 22 k~~lL~~y--~i~~~qLP~I~~~DPvar~-----~G~k~GdVv 57 (77)
T 1eik_A 22 AKRVLKEL--DAHPEQLPKIKTTDPVAKA-----IGAKRGDIV 57 (77)
T ss_dssp HHHHHHHT--TCCTTTSCCCBTTSHHHHG-----GGCCTTCEE
T ss_pred HHHHHHHc--CCCHHHCCeeeCcCHhhHH-----hCCCCCCEE
Confidence 46799999 5899999999887544322 566665543
No 455
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=21.16 E-value=64 Score=33.53 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred ceEEEEEeCCceeEEEEEecCC
Q psy224 4 QVVLGIDIGTTSVKVCLIDANT 25 (547)
Q Consensus 4 ~~~lgIDiGTtsiK~~l~d~~g 25 (547)
+.+.+||+||.|+|.++++..+
T Consensus 15 ~~~AaIDiGSNS~rL~I~~~~~ 36 (508)
T 3hi0_A 15 APVSVIDIGSNSVRLVVYEGLS 36 (508)
T ss_dssp CCEEEEEECSSEEEEEEESCSS
T ss_pred CeEEEEEECCccEEEEEEEEcC
Confidence 5688999999999999999754
Done!