RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy224
(547 letters)
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 386 bits (994), Expect = e-134
Identities = 125/189 (66%), Positives = 154/189 (81%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
PAP +EG AV++G+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIAF DR EEF+ IN
Sbjct: 23 MPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN 82
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV E++G RGL
Sbjct: 83 TEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGL 142
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPGS+T+ DP+G
Sbjct: 143 FIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAG 202
Query: 539 SQEYFKTVN 547
+YF +N
Sbjct: 203 KLKYFDKLN 211
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 385 bits (992), Expect = e-133
Identities = 127/188 (67%), Positives = 152/188 (80%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP++EG AV+NG+FK +KLS Y+G+Y+V FFYPLDFTFVCPTEIIAFSDR EF+ IN
Sbjct: 52 KPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN 111
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW PR +GGLG M IP+LSD + I++ YGV E+ G RGL
Sbjct: 112 TEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGL 171
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID+K LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEVCPAGWKPGS T+ DPSG
Sbjct: 172 FIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSG 231
Query: 539 SQEYFKTV 546
+YF +
Sbjct: 232 KLKYFDKM 239
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 385 bits (992), Expect = e-133
Identities = 125/189 (66%), Positives = 154/189 (81%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP +EG AV++G+FK +KL+ Y+G+Y+V FFYPLDFTFVCPTEIIAF DR EEF+ IN
Sbjct: 66 KPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN 125
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
T+V+ACS DS F+HLAW N PR +GGLG + IP+LSD + I++ YGV E++G RGL
Sbjct: 126 TEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGL 185
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIIDDK LRQIT+NDLPVGRSVDETLRLVQAFQ+ +HGEV PAGWKPGS+T+ DP+G
Sbjct: 186 FIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETIIPDPAG 245
Query: 539 SQEYFKTVN 547
+YF +N
Sbjct: 246 KLKYFDKLN 254
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 383 bits (986), Expect = e-133
Identities = 124/189 (65%), Positives = 149/189 (78%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
KPAP+F+ AVV+G FK +KLS YKG+YVVLFFYPLDFTFV PTEIIAFS+RAE+F+K+
Sbjct: 9 KPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLG 68
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
+V+ S DS F+HLAW N PR +GGLG + IP+L+D + ++ YGVL + GI YRGL
Sbjct: 69 CEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGL 128
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID K LRQIT+NDLPVGRSVDE LRLVQAFQ+ EHGEVCPAGWKPGS T+K +
Sbjct: 129 FIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDD 188
Query: 539 SQEYFKTVN 547
S+EYF N
Sbjct: 189 SKEYFSKHN 197
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 383 bits (987), Expect = e-132
Identities = 121/206 (58%), Positives = 151/206 (73%)
Query: 342 LIVEQDQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP 401
L+ + D + A+ + AP F+G AVV+G+FK I L +KG+Y+VLFFYPLDFTFVCP
Sbjct: 14 LVPRGSHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCP 73
Query: 402 TEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIA 461
TEIIAFSD+A EF +N +V+A S DSHFSHLAW N PR GGLG M I +LSD + I+
Sbjct: 74 TEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS 133
Query: 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVC 521
R YGVL E G+ RGLFIID ++ +++NDLPVGRSV+ETLRLV+AFQFV HGEV
Sbjct: 134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVS 193
Query: 522 PAGWKPGSKTMKADPSGSQEYFKTVN 547
PA W P S T+K P+ S+EYF+ VN
Sbjct: 194 PANWTPESPTIKPHPTASREYFEKVN 219
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 383 bits (985), Expect = e-132
Identities = 107/189 (56%), Positives = 137/189 (72%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
K AP F+ AVV+G F + L +YKG+YVVL F PL FTFV PTEIIAFS+ A++F++
Sbjct: 27 KQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG 86
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
QV+ STDS +S LAW NIPR +GGLG + IP+L+D + S++R YGVL EE G+ RGL
Sbjct: 87 AQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGL 146
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPSG 538
FIID K +R ITINDLPVGR+VDE LRLV+AFQ+ ++G V P W PG+ T+K
Sbjct: 147 FIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTVED 206
Query: 539 SQEYFKTVN 547
S+EYF+ N
Sbjct: 207 SKEYFEAAN 215
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 379 bits (977), Expect = e-131
Identities = 126/190 (66%), Positives = 149/190 (78%), Gaps = 1/190 (0%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
PAP+F A++ NG FK + L+ YKG+++VLFFYP+DFTFVCPTEI FSDR +EF I
Sbjct: 10 HPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI 69
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V+ACS DS +SHLAW +I R +GGLG M IPIL+DK+ I +SYGVL EE G+ YRG
Sbjct: 70 GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRG 129
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADPS 537
LFIID KQNLRQIT+NDLPVGR VDE LRLV+AFQFV +HGEVCPA WKPG KTMK DP
Sbjct: 130 LFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMKPDPE 189
Query: 538 GSQEYFKTVN 547
S+EYF V
Sbjct: 190 KSKEYFGAVA 199
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 372 bits (957), Expect = e-128
Identities = 83/193 (43%), Positives = 124/193 (64%), Gaps = 3/193 (1%)
Query: 356 ALEKPAPEFEGQAVV-NGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEE 413
A + AP F+ +AV + F + LS + G +YV+L+FYPLDFTFVCP+EIIA +
Sbjct: 1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDS 60
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK+ N +++ CS DS F+HLAW P ++GG+G++ ++SD S SIARSY VL E +
Sbjct: 61 FKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE-SV 119
Query: 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMK 533
R +ID + ++ + +N+L +GRSVDE LRL+ A Q ++G+VCPA W+ G ++MK
Sbjct: 120 ALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMK 179
Query: 534 ADPSGSQEYFKTV 546
G +Y +
Sbjct: 180 PSEEGVAKYLSNL 192
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 370 bits (953), Expect = e-127
Identities = 118/178 (66%), Positives = 139/178 (78%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+PAPEF+GQAV+NG+FK I L Y+G+YVVLFFYP DFTFVCPTEIIAFSD+ EEF N
Sbjct: 44 RPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN 103
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
QVIACSTDS +SHLAW N+ R GGLG M IP+L+D+ I+++YGV +EE G +RGL
Sbjct: 104 CQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGL 163
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
FIID LRQITIND PVGRSVDETLRL+ AFQFV +HGEVCP WK G +K +
Sbjct: 164 FIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGIKVNQ 221
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 369 bits (950), Expect = e-127
Identities = 78/190 (41%), Positives = 121/190 (63%), Gaps = 3/190 (1%)
Query: 359 KPAPEFEGQAVV-NGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
K AP F+ +AV + F + L+Q+ G +YV+L+FYPLDFTFVCP+EIIA + F +
Sbjct: 25 KEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE 84
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
N +++ CS DS ++HLAW P KGG+G++ +LSD + SI++ Y VL ++ + R
Sbjct: 85 RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD-SVSLR 143
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
+ID ++ + +N+L +GRSVDE LR++ A Q ++G+VCPA W+ G +MK
Sbjct: 144 AFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSMKPSE 203
Query: 537 SGSQEYFKTV 546
G +Y T+
Sbjct: 204 EGVAQYLSTL 213
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 368 bits (947), Expect = e-126
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 359 KPAPEFEGQAV-VNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
K A F Q + N + N+ LS + GQ Y L FYPL++TFVCPTEII F+ ++F+
Sbjct: 29 KKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN 88
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
N +++ S DS +SHLAW N+P KGG+G++ ++SD + I+++Y VL + R
Sbjct: 89 KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDN-SFALR 147
Query: 477 GLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKADP 536
GLFIID +R T+NDLP+GR+V E LR + + V GEVCP WK G K K
Sbjct: 148 GLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAFKPTT 207
Query: 537 SGSQEYFKTVN 547
+Y N
Sbjct: 208 ESLIDYMNNAN 218
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 361 bits (928), Expect = e-124
Identities = 92/192 (47%), Positives = 120/192 (62%), Gaps = 4/192 (2%)
Query: 359 KPAPEFEGQAVVNGQ--FKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
K AP+F+ AV+ ++ +LS+ G+ V+LFF+P DFTFVCPTEIIAF R ++F
Sbjct: 5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH 64
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+ VI S DS H AW N P KGG+G ++ P+++D + SI+R Y VL EE I
Sbjct: 65 EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-AIAL 123
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMKAD 535
RG F+ID +R INDLP+GR+ DE LR+V A EHGEVCPAGW+ G K MKA
Sbjct: 124 RGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKAT 183
Query: 536 PSGSQEYFKTVN 547
G EY K +
Sbjct: 184 HQGVAEYLKENS 195
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 359 bits (925), Expect = e-124
Identities = 114/186 (61%), Positives = 144/186 (77%), Gaps = 1/186 (0%)
Query: 350 MRDASYALEKPAPEFEGQAVV-NGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
M + L PAPEF+ A++ NG FK + LS YKG+YVVLFFYP+DFTFVCPTEII FS
Sbjct: 1 MSCGAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFS 60
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
D A+ F +INT+VI+CS DS +SHL W ++ R KGGLG MAIP+L+DK+ +IAR+YGVL+
Sbjct: 61 DDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD 120
Query: 469 EETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
E++G+ YRG+FIID LRQI IND+P+GR+V+E +RLV+A QFV EHGEVCPA WK G
Sbjct: 121 EDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKG 180
Query: 529 SKTMKA 534
K
Sbjct: 181 DAKKKE 186
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 348 bits (896), Expect = e-119
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
F+ QA NG+F + +G++ V FFYP DFTFV PTE+ +D EE +K+
Sbjct: 5 TKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG 64
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGL 478
V + STD+HF+H AW + + + ++ D + ++ R++ + E+ G+ R
Sbjct: 65 VDVYSVSTDTHFTHKAWHSSSE---TIAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121
Query: 479 FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADPS 537
F++D + ++ I + +GR + LR ++A Q+VA H GEVCPA WK G T+
Sbjct: 122 FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLD 181
Query: 538 G 538
Sbjct: 182 L 182
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 345 bits (888), Expect = e-118
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 5/182 (2%)
Query: 359 KPAPEFEGQAVVNGQ-FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
F QA +G+ F + + KG++ ++ FYP DF+FVCPTE+ E KK+
Sbjct: 5 TEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL 64
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+V + STD+HF H AW N +G + ++ D S +I+R + VLNEETG+ RG
Sbjct: 65 GVEVYSVSTDTHFVHKAWHE---NSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEH-GEVCPAGWKPGSKTMKADP 536
FIID ++ I IN +GR + V+A Q+V E+ GEVCPA W+ G +T+K
Sbjct: 122 TFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLKPSL 181
Query: 537 SG 538
Sbjct: 182 DI 183
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 323 bits (831), Expect = e-109
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 20/195 (10%)
Query: 359 KPAPEFEGQAVVNGQ------------FKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIA 406
P ++ A++ G F I ++ G++ V+FF+P DFTFVCPTEI A
Sbjct: 8 DQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAA 67
Query: 407 FSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGV 466
FS +EF+ + Q++ S DS F+H W L + P+LSD ++++ GV
Sbjct: 68 FSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQAAGV 124
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWK 526
LN + G+ R FI+D ++ ++ VGR+VDE LR++ A Q E+C + W+
Sbjct: 125 LNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SDELCASNWR 179
Query: 527 PGSKTMKADPSGSQE 541
G T+ A
Sbjct: 180 KGDPTLDAGELLKAS 194
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 289 bits (743), Expect = 8e-96
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
P F +A + +L +Y + + +LF +P DFT VC TE+ E+F K+
Sbjct: 7 ATFPNFTAKASGI--DGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 64
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG----- 472
N ++I S +S SH W + G L IPI+ D+S +A +++E+
Sbjct: 65 NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGL 124
Query: 473 -IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKT 531
+ R LF I ++ ++ + GR+ E LR++++ Q P W G K
Sbjct: 125 PLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKC 184
Query: 532 MKADPSGSQEYFKT 545
P+ +
Sbjct: 185 CVI-PTLQDDEISK 197
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 289 bits (741), Expect = 3e-95
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
+ P FE + +K + G + VLF +P DFT V TE+ +FKK
Sbjct: 7 EVFPNFEADST----IGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGL-GDMAIPILSDKSMSIARSYGVLNEE------ 470
++IA S D+ H W + G+ GDM PI++D++ +A G+++ +
Sbjct: 63 GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTG 122
Query: 471 TGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSK 530
+ R +FII + L+ + GR+ E LR++ + Q A+ PA W+PG +
Sbjct: 123 MPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPGDR 182
Query: 531 TMKADPS---GSQEYFKTVN 547
M ++ F +
Sbjct: 183 CMVVPGVSAEEAKTLFPNME 202
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 286 bits (735), Expect = 2e-94
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ PE E +G K +G++ VLF +P DFT VC TE ++F+ R E+F+++
Sbjct: 9 ERFPEMEVTTD-HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 67
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI-PYRG 477
+I S DS FSH+ W G+ + PI++D ++AR G+L+ E+ RG
Sbjct: 68 VDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRG 126
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKP----GSKTMK 533
+FI+D + +R + + +GR VDE LR+V+A + PA W G +
Sbjct: 127 VFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIV 186
Query: 534 ADPSGSQEYFK 544
P+ +
Sbjct: 187 PPPTTEDQARA 197
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 282 bits (724), Expect = 5e-93
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 15/197 (7%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKG-QYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP FE I+ + G + +LF +P DFT VC TE+ + A EF K
Sbjct: 9 DVAPNFEANTT----VGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 64
Query: 418 NTQVIACSTDSHFSHLAWC---NIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG-- 472
N ++IA S DS HLAW N ++ + PI+ D++ +A G+L+
Sbjct: 65 NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDE 124
Query: 473 ----IPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPG 528
+ R +F+ + L+ + GR+ DE LR+V + Q AE P WK G
Sbjct: 125 KGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDG 184
Query: 529 SKTMKADPSGSQEYFKT 545
M P+ +E K
Sbjct: 185 DSVMVL-PTIPEEEAKK 200
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 211 bits (539), Expect = 2e-66
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQ-YVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP+F + + + + L Y+G V+L F+PL FT +C E+ D EF+
Sbjct: 13 ATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND 69
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEETGIPY 475
++ +A S +H W + G P+LSD +++++YGV NE+ GI
Sbjct: 70 DSAALAISVGPPPTHKIW----ATQSGFT---FPLLSDFWPHGAVSQAYGVFNEQAGIAN 122
Query: 476 RGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
RG F++D +R + R + A
Sbjct: 123 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 135 bits (342), Expect = 9e-38
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKIN 418
+ AP+FE + + + K +KLS KG+ VVL FYP FT VC E+ F D +F ++N
Sbjct: 8 ELAPDFE---LPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN 64
Query: 419 TQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP---- 474
V+ S D FS+ A+ + L ILSD + + + Y V E +P
Sbjct: 65 AVVLGISVDPPFSNKAF----KEHNKLN---FTILSDYNREVVKKYNVAWEFPALPGYVL 117
Query: 475 -YRGLFIIDDKQNLRQITINDLPVGRS-VDETLRLVQA 510
R +F+ID + +R ++D P DE ++V++
Sbjct: 118 AKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 123 bits (312), Expect = 2e-33
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP+F + N F+ + L + +G+ VL F+P F+ VC E+ F D+ + +K
Sbjct: 10 KAPDFT---LPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA 66
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY-- 475
N +V+A S DS + + +++ L +LSD + + + Y V +E+
Sbjct: 67 NAEVLAISVDSPWCLKKF----KDENRLA---FNLLSDYNREVIKLYNVYHEDLKGLKMV 119
Query: 476 --RGLFIIDDKQNLRQITINDLPVGRS-VDETLRLVQAFQ 512
R +FI+ + + D P+ DE +R
Sbjct: 120 AKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 108 bits (272), Expect = 6e-28
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
A +F + L+ + G+ VL P T +C T+ F++ NT
Sbjct: 21 KALDFS---LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NT 75
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V+ S D F+ WC G G +LSD S R Y +L E + R +
Sbjct: 76 VVLTVSMDLPFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAV 129
Query: 479 FIID 482
F++D
Sbjct: 130 FVLD 133
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 106 bits (266), Expect = 5e-27
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F V++ + L+ Y G+ ++ P T VC + F+ A +
Sbjct: 25 FAPDFT---VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EG 78
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V+ S D F+ WC G + LSD + +S +YGV+ EE + R +
Sbjct: 79 IVLTISADLPFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAV 132
Query: 479 FIID 482
F++D
Sbjct: 133 FVLD 136
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 101 bits (254), Expect = 2e-25
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQY-VVLFFYPLDFTFVCPTEIIAFSDRAEEFKKI 417
AP FEG A NG + I LS Y G++ +VL+FYP D T E AF D + K
Sbjct: 6 DKAPLFEGIAD-NG--EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY 62
Query: 418 NTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRG 477
+ VI S+D SH + + K L ++SD I YG R
Sbjct: 63 DVVVIGVSSDDINSHKRF----KEKYKLP---FILVSDPDKKIRELYGAK-GFILP-ARI 113
Query: 478 LFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
F+ID K +R I + + V+E L+ ++ +
Sbjct: 114 TFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIK 148
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 101 bits (254), Expect = 2e-25
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 349 AMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFS 408
AM DA L + G L + G ++V++FYP D T TE + F+
Sbjct: 3 AMTDAVLELPAATFDLPLSLS-GG--TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFN 59
Query: 409 DRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLN 468
EF K +++ S DS SH + K G A P++SD ++ R++ V+
Sbjct: 60 ALLPEFDKAGAKILGVSRDSVKSHDNF----CAKQGF---AFPLVSDGDEALCRAFDVIK 112
Query: 469 EET--GIPYRGL----FIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQ 512
E+ G G+ F++ + + Q + V D L ++A
Sbjct: 113 EKNMYGKQVLGIERSTFLLSPEGQVVQA-WRKVKVAGHADAVLAALKAHA 161
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 100 bits (251), Expect = 6e-25
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
APE VV + + K V+ P T VC TE F++ +
Sbjct: 27 APEAV---VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVD 81
Query: 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYRG 477
V S D F+ +C + + SD YGVL E GI R
Sbjct: 82 VTVVSMDLPFAQKRFC------ESFNIQNVTVASDFRYRDMEKYGVLIGEGALKGILARA 135
Query: 478 LFIID 482
+FIID
Sbjct: 136 VFIID 140
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 99.6 bits (248), Expect = 5e-24
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 25/189 (13%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
P F +V+ Q + L + ++ ++ R +
Sbjct: 27 YLPSFM---LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHL 83
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPY 475
++I + DS S G I +LS + + YGVL E +G
Sbjct: 84 KLIVITVDSPSSLARAR------HEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTS 137
Query: 476 RGLFIIDDKQNLR--QIT--INDLPVGRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKT 531
+ + D + + D ++++ L+ + + A +
Sbjct: 138 PAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ--------QAMAAEREAAEAR 189
Query: 532 MKADPSGSQ 540
+ D +
Sbjct: 190 QEQDAEREK 198
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 96.9 bits (242), Expect = 8e-24
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
AP+F V+ + L+ KG+ ++ P T VC + F++ A + +
Sbjct: 23 QAPDFT---VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DV 77
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEETGIPYRGL 478
V S D F+ WC G+ + LSD + MS ++GV +E + R +
Sbjct: 78 NVYTISADLPFAQARWC----GANGIDKV--ETLSDHRDMSFGEAFGVYIKELRLLARSV 131
Query: 479 FIID 482
F++D
Sbjct: 132 FVLD 135
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 97.4 bits (243), Expect = 1e-23
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFK 415
L LS Y Q++VL+FYP D T TE + F+ +F+
Sbjct: 26 TLNHSLLNHPLMLS-GS--TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFE 82
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEET--GI 473
+IN V+ S DS SH ++ K G P++SD + +++ V+ E+T G
Sbjct: 83 QINATVLGVSRDSVKSHDSF----CAKQGF---TFPLVSDSDAILCKAFDVIKEKTMYGR 135
Query: 474 PYRGL----FIIDDKQNLRQI 490
G+ F+I + +
Sbjct: 136 QVIGIERSTFLIGPTHRIVEA 156
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 97.1 bits (242), Expect = 2e-23
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
A +F +V ++ LS + G+ VL +P T VC + F+ A E + NT
Sbjct: 58 AKDFT---LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTV 112
Query: 421 VIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPYR 476
V+ S+D F+ +C GL ++ LS + ++YGV E G+ R
Sbjct: 113 VLCISSDLPFAQSRFC----GAEGLSNV--ITLSTLRGADFKQAYGVAITEGPLAGLTAR 166
Query: 477 GLFIID 482
+ ++D
Sbjct: 167 AVVVLD 172
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 94.7 bits (236), Expect = 5e-23
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
F +V ++ L+ + + VL +P T VC T + F+ +A + NT
Sbjct: 22 IVENFI---LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NT 76
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-KSMSIARSYGVLNEE---TGIPY 475
V+ S D F+ +C G G +S ++ ++ GV + G+
Sbjct: 77 IVLCISADLPFAQARFC------GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTS 130
Query: 476 RGLFIID 482
R + ++D
Sbjct: 131 RAVIVLD 137
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 95.0 bits (237), Expect = 6e-23
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINT 419
PAP F + G I Q++G+ V+L +P T VC T + F +RA
Sbjct: 23 PAPAFT---LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GA 76
Query: 420 QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEE---TGIPYR 476
V+ S D F+ +C G ++ S S YGV + G+ R
Sbjct: 77 TVLCVSKDLPFAQKRFC----GAEGTENV--MPASAFRDSFGEDYGVTIADGPMAGLLAR 130
Query: 477 GLFIID 482
+ +I
Sbjct: 131 AIVVIG 136
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 82.7 bits (205), Expect = 9e-19
Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 17/159 (10%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQY--KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
P P+ + +I L + + VV F YP T + F D +E K+
Sbjct: 11 DPIPDLSLLNE-DN--DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE 67
Query: 417 INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYR 476
V S DS S + ++K L +LSD G R
Sbjct: 68 -YAAVFGLSADSVTSQKKF----QSKQNLP---YHLLSDPKREFIGLLGAKKTPLSGSIR 119
Query: 477 GLFIIDDKQNLRQITINDLP---VGRSVDETLRLVQAFQ 512
FI D L+ + P V + E L + + F+
Sbjct: 120 SHFIFVDG-KLKFKRVKISPEVSVNDAKKEVLEVAEKFK 157
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 71.2 bits (175), Expect = 3e-13
Identities = 44/287 (15%), Positives = 87/287 (30%), Gaps = 56/287 (19%)
Query: 86 LSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHEPSF----PLHLLPK 141
L D+IV+ + + V ++ A ++ + + + + +P L
Sbjct: 184 LEATDWIVSQMTG--KIVKNSCTAGYKAIWHKREGYPSNEFFKALDPRLEHLTTTKLRGD 241
Query: 142 IQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAIVNISTSAQIA 197
I P G G L + +G+N + V D +V A ++ + TS
Sbjct: 242 IVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPGKLVMAMGTSICHM 301
Query: 198 FIDE-----------------------MGASMNGGNCLATFVCTLQNWFKEFGFNVPQNQ 234
+ E G+ A WF + G +
Sbjct: 302 LLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFA--------WFVKHGVS-AATF 352
Query: 235 IWAKLINASDPINHITRHHSTLR-------VTPTLLGDRHVIAESASVTHITIQNLGVTK 287
A+ + + S LR G+R ++ ++ + L
Sbjct: 353 DEAQEKGV-NVHALLEEKASQLRPGESGLLALDWWNGNRSILVDTELSGMLLGYTLQTKP 411
Query: 288 --LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNHIL 330
++ AL E I++ H G ++ + G +NH+L
Sbjct: 412 EEIYRALLEATAFGTRAIVD--AFHGRGVEVHELYACGGLPQKNHLL 456
Score = 49.3 bits (118), Expect = 2e-06
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAH------EQ 53
MS ++ +G+D GT S + LID + +EL+ + + + N Q
Sbjct: 1 MSLTKYTIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQ 60
Query: 54 NVRKIVSTLHNCI 66
+ V L +
Sbjct: 61 HPLDYVEVLTTSV 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 5e-12
Identities = 82/566 (14%), Positives = 163/566 (28%), Gaps = 154/566 (27%)
Query: 27 EELSSESKDTQANIP---SAHD----SNPGAHEQNV-R-KIVSTLHNCILRL-PKDHL-- 74
+ +E + D N + NV R + L +L L P ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 75 -------KQVKHIESTNDLSFQ------------------DFIVAMLCDLQEPVMSNQNA 109
K ++ Q + ++ ML L + N +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 110 ASWGYFNCKLST-WNEQILRN--HEPSFPLHLLPKIQPSGTIVGTLTRD-WLGINKDTPI 165
S N KL + LR + LL ++ + N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VL----LNVQ---NAKA-W 259
Query: 166 NVALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEMGASMNGGNCLATFVCTLQNWFKE 225
N A +L C +L T ++ + + +D ++ + + +
Sbjct: 260 N-AF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDC 313
Query: 226 FGFNVPQ----------NQIWAKL---INASDPINHIT--RHHSTLRV-----TPTLLGD 265
++P+ + I + + D H+ + + + P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 266 RHVIAESASV----THITIQNLGV--TKLFVALCEGIINNIHDIMNRSVLHRSGINRIIG 319
+ SV HI L + + + ++N +H S++ + I
Sbjct: 374 MF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTIS 427
Query: 320 IGSCLTRNHILQHYIERIYGL-QLIVEQDQAMRDASYALEKPAPEFEGQAVVN--G-QFK 375
I S L+ +E Y L + IV+ + ++ + P + Q + G K
Sbjct: 428 IPSIYLE---LKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 376 NIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQVIACSTDSHFSHLAW 435
NI+ + + ++F LDF F+ E +KI AW
Sbjct: 483 NIEHPERMTLFRMVF---LDFRFL---E-----------QKIRH-----------DSTAW 514
Query: 436 CNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITINDL 495
G + + L + + Y N+ P + L +I N +
Sbjct: 515 N----ASGSILN----TLQQ--LKFYKPYICDND----PKYERLVNAILDFLPKIEENLI 560
Query: 496 PVGRSVDETLRLVQ-AFQFVAEHGEV 520
S + L++ A E +
Sbjct: 561 ---CS--KYTDLLRIALMA--EDEAI 579
Score = 30.2 bits (67), Expect = 2.6
Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 73/260 (28%)
Query: 297 INNIHDIMNRSVLHRSGINRIIGIGSCLTRNH----ILQHYIERIYGLQLIVEQDQAMRD 352
++ D+ +S+L + I+ II ++ L E + Q VE + +
Sbjct: 35 CKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVE-EVLRIN 90
Query: 353 ASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAE 412
+ + E +++ + + Y V F V R +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKY---NVS---------RLQ 135
Query: 413 EFKKINT---------------------QVIA---CSTDS---HFS-HLAW-----CNIP 439
+ K+ +A C + + W CN P
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 440 RNKGGLGDMAIPILSDKSMSIARSYGVLNEET-GIPYRGLFIIDDKQNLRQITI-----N 493
+ + +L I ++ ++ + I R I + LR++ N
Sbjct: 196 -------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYEN 245
Query: 494 DLPVGRSVDETLRLVQAFQF 513
L V +V + + AF
Sbjct: 246 CLLVLLNV-QNAKAWNAFNL 264
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 65.4 bits (160), Expect = 2e-11
Identities = 45/285 (15%), Positives = 93/285 (32%), Gaps = 58/285 (20%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+++H+ L +D++V L NA++ G + K W+ ++L ++
Sbjct: 149 QAFGRLRHVV----LGAKDYVVLRLTG--RHATDRTNASTTGLYRPKDDAWHVELLADYG 202
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
L L+P++ G VG ++ G TP+ LGD + L DA
Sbjct: 203 F--SLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAY 260
Query: 188 VNISTSAQI-AFIDE------------------------MGASMNGGNCLATFVCTLQNW 222
+++ T+ + + +N GN L W
Sbjct: 261 LHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNIL--------QW 312
Query: 223 FKE-FGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHI 278
G ++ + A+ L P L +R + ++ +
Sbjct: 313 ALTLVGHRPGEDCAEYFHMAAA--EVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGV 370
Query: 279 TIQNLGVTK--LFVALCEGIINNIHDIMNRSVLHRSGINRIIGIG 321
T T+ + +A+ EG ++ +L + + +G
Sbjct: 371 TGAT---TRAQILLAVLEGAALSLRWCAE--LLGMEKVGLLKVVG 410
Score = 53.0 bits (128), Expect = 2e-07
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIV 59
MS + + DIGTT VK L D + S + G EQ+
Sbjct: 1 MSLAFYIATFDIGTTEVKAALADRDGG-LHFQRSIALETYGD-----GNGPVEQDAGDWY 54
Query: 60 STLHNCILRLPKDHL--KQVKHI 80
+ + + ++V I
Sbjct: 55 DAVQRIASSWWQSGVDARRVSAI 77
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 64.5 bits (158), Expect = 4e-11
Identities = 41/285 (14%), Positives = 76/285 (26%), Gaps = 63/285 (22%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+ + D+I +L E V+ A G+ + T ++
Sbjct: 152 AVFGAIATV-----CGSYDYINMLLTG--ERVVDRNWALEGGFIDLASGTVEADLVA--L 202
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
P +P P+ ++G +T + G+ P+ D S LA D +
Sbjct: 203 AHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRPGDVL 262
Query: 188 VNISTSAQI-AFIDE--------------------MGASMNGGNCLATFVCTLQNWFKE- 225
+ + I G G+ L NW +
Sbjct: 263 LKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSAL--------NWLAKL 314
Query: 226 FGFNVPQN--QIWAKLINASDPINHITRHHSTLRVTPTLLGDR--HVIAES-ASVTHITI 280
+ L L P LG++ + + T +++
Sbjct: 315 LAPEAGEAAHAQLDALAAEVPA------GADGLVCLPYFLGEKTPIHDPFASGTFTGLSL 368
Query: 281 QNLGVTK--LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIG 321
+ T+ L+ AL E + + VL G R
Sbjct: 369 SH---TRGHLWRALLEAVALAFRHHVA--VLDDIGHAPQRFFASD 408
Score = 51.5 bits (124), Expect = 5e-07
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQN----VR 56
+ V+G+DIGTTS L+ ++ S+ T + P +PG E++
Sbjct: 4 AQGRQVIGLDIGTTSTIAILVRLPDT-VVAVASRPTTLSSP-----HPGWAEEDPAQWWD 57
Query: 57 KIVSTLHNCILRLPKDHLKQVKHI 80
+ L + + I
Sbjct: 58 NARAVLAELKTTAGES-DWRPGGI 80
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 56.5 bits (137), Expect = 8e-10
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFF-----YPLDFTFVCPTEIIAFSDRAEE 413
AP F + NG K I+LS KG+ V L F P C E +++ +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVFLNFWGTWCEP------CKKEFPYMANQYKH 54
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK +++A + S +A N ++ G + P++ D + +Y V + +
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDV----SPL 104
Query: 474 PYRGLFIID 482
P F+I+
Sbjct: 105 PT--TFLIN 111
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 55.4 bits (134), Expect = 2e-09
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
A F + NG K + L+ KG+Y+ + + P C E+ A + E+
Sbjct: 8 PSAASFSYPDI-NG--KTVSLADLKGKYIYIDVWATWCGP------CRGELPALKELEEK 58
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+ + ++ S D + AW N+ G I + + +Y + GI
Sbjct: 59 YAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI----NGI 109
Query: 474 PYRGLFIID 482
P ++D
Sbjct: 110 PR--FILLD 116
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 58.5 bits (142), Expect = 3e-09
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 59/253 (23%)
Query: 109 AASWGYFNCKLSTWNEQILR----------NHEPSFPLHLLPKIQPSGTIVGTLTRDW-- 156
A+ Y++ + + ++ + +LP +
Sbjct: 199 ASGTIYYDAASNEYRRDLIAMVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIA 258
Query: 157 -LGINKDTPINVALGDLQCSVLATLQYHSDAIVNISTSAQI-AFIDE------------- 201
+ + GD + L D +++ TS A +
Sbjct: 259 GKNVEGGCLLAPGGGDNAMASLGLGMAVGDVSISLGTSGVAAAISENPTYDLTGAVSGFA 318
Query: 202 --------MGASMNGGNCLATFVCTLQNWFKE-FGFNVPQNQIWAKLINASDPINHITRH 252
+ ++NG L + + G + + AKL AS P
Sbjct: 319 DCTGHYLPLACTINGSRIL--------DAGRAALGVDYDE---LAKLAFASKP------G 361
Query: 253 HSTLRVTPTLLGDR--HVIAESASVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLH 310
+ + + P G+R + +A+ + +T+ N L A EG++ + D + ++
Sbjct: 362 ANGITLVPYFDGERTPNRPNATATFSGMTLANTTRENLARAFVEGLLCSQRDCLE--LIR 419
Query: 311 RSG--INRIIGIG 321
G I RI+ IG
Sbjct: 420 SLGASITRILLIG 432
Score = 50.8 bits (122), Expect = 7e-07
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+V G+D T S KV + DA T E + + H P + S
Sbjct: 2 SLRTLVAGVDTSTQSCKVRVTDAETGELVRFGQ--------AKH---PNGTSVDPSYWWS 50
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ L V +
Sbjct: 51 AFQEAAEQAGG--LDDVSAL 68
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 55.0 bits (133), Expect = 3e-09
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
AP+F G +KLS G V LDF ++ C + +
Sbjct: 7 DKAPDFALPGK-TGV---VKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56
Query: 414 FKKINTQVIACSTDSHFSHLAWCN-IPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+K QV+A + D+ + + + D R YGV G
Sbjct: 57 YKAKGFQVVAVNLDA--KTGDAMKFLAQVP-----AEFTVAFDPKGQTPRLYGV----KG 105
Query: 473 IPYRGLFIID 482
+P F+ID
Sbjct: 106 MPT--SFLID 113
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 54.6 bits (132), Expect = 4e-09
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 23/153 (15%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFF-----YPLDFTFVCPTEIIAFSDRAEE 413
AP G + G ++ L+ +KG+YV++ F C E
Sbjct: 7 SVAPAITGIDL-KG--NSVSLNDFKGKYVLVDFWFAGCSW------CRKETPYLLKTYNA 57
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
FK + STD W + + + D + SY + G
Sbjct: 58 FKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI----VGF 110
Query: 474 PYRGLFIIDDKQNLRQITINDLPVGRSVDETLR 506
P+ + ++D + + + + +V++ +
Sbjct: 111 PH--IILVDPEGKIVAKELRGDDLYNTVEKFVN 141
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 54.8 bits (132), Expect = 5e-09
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 30/139 (21%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
+ F + +G + I L+ G V+ L F + CP E+
Sbjct: 15 EREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLTEK 65
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI----------PILSDKSMSIARS 463
+++I+ I T L +M I+ S+
Sbjct: 66 YREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEK 125
Query: 464 YGVLNEETGIPYRGLFIID 482
+ V I Y + I+D
Sbjct: 126 FNV----RSIDY--IVIMD 138
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 53.9 bits (130), Expect = 5e-09
Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 31/134 (23%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEI---IAFSDR 410
A F +G L Q+ +Y +LF C I A
Sbjct: 9 TKALNFTYTLD-SG--VKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKASPVI 59
Query: 411 AEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLN 468
+V++ D W + DK + Y +
Sbjct: 60 NGFTAAKKLKVLSIYPDE--ELDEWKKHRNDFA----KEWTNGYDKELVIKNKNLYDL-- 111
Query: 469 EETGIPYRGLFIID 482
IP L+++D
Sbjct: 112 --RAIPT--LYLLD 121
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 54.3 bits (131), Expect = 6e-09
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 20/138 (14%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF----VCPTEIIAFSDRAEEF 414
+ AP+F +G K + LS +G+ V+ L FT VC E+
Sbjct: 11 EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
K N D ++ G + P+ D I Y + + GI
Sbjct: 63 HKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYAL--RDAGIT 116
Query: 475 YRGLFIIDDKQNLRQITI 492
+ID + + ++T
Sbjct: 117 R--NVLIDREGKIVKLTR 132
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 53.8 bits (130), Expect = 7e-09
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
K AP F + +G K + + +G+ + ++F CP E+ A +
Sbjct: 6 KTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIKTAND 56
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+K N QV+A + + ++ G + ++ D ++ +++G
Sbjct: 57 YKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT----QVY 107
Query: 474 PYRGLFIID 482
P +I
Sbjct: 108 PT--SVLIG 114
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 52.7 bits (127), Expect = 1e-08
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEEFK 415
+FE V +G K +LS YKG+ V L F ++ C + + A+E
Sbjct: 2 VADFELMGV-DG--KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAG 52
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
+ S + + GL +P+L D S + +YGV P
Sbjct: 53 DDYVVLTVVSPGHK-GEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGV----RSYPT 107
Query: 476 RGLFIID 482
ID
Sbjct: 108 --QAFID 112
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 52.7 bits (127), Expect = 1e-08
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 27/159 (16%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
K AP G L + +Y +LFF+ C E D +
Sbjct: 9 KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD--KSMSIARSYGVLNEET 471
+ QV A + + W R+K G + D +Y +
Sbjct: 60 NRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDI----Y 110
Query: 472 GIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQA 510
P L+++D + + I + + + + ++
Sbjct: 111 ATPV--LYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 55.8 bits (135), Expect = 2e-08
Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 71/302 (23%)
Query: 89 QDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE-PSFPLHLLPKI----Q 143
DF+ + S + + W+ + + KI +
Sbjct: 168 PDFLTWRATK--DETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVK 225
Query: 144 PSGTIVG-TLTRDW---LGINKDTPINVALGDLQCSVLATLQYHSDAIVNIS-------- 191
P G +G L++ +G+ T ++V++ D + L N +
Sbjct: 226 PMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALI 285
Query: 192 --TSAQIAFIDE-----------------------MGASMNGGNCLATFVCT------LQ 220
TS + G G + + + L
Sbjct: 286 GGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALL 345
Query: 221 NWFKEFGFNVPQ--NQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAESA----- 273
K G + + N I ++ + I +T + + P G+R A
Sbjct: 346 EQAKNKGETIYEALNYILRQMAGEPENIAFLTND---IHMLPYFHGNRSPRANPNLTGII 402
Query: 274 ---SVTHITIQNLGVTKLFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIGSCLTRNH 328
++ T +++ ++A + + I+ ++++G I+ ++ G T+N
Sbjct: 403 TGLKLST-TPEDM--ALRYLATIQALALGTRHIIET--MNQNGYNIDTMMASGG-GTKNP 456
Query: 329 IL 330
I
Sbjct: 457 IF 458
Score = 48.9 bits (117), Expect = 3e-06
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 1 MS-SQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIV 59
MS + +G+D+GT S + + D + S++ P EQ+ I
Sbjct: 1 MSLASYFIGVDVGTGSARAGVFDLQ-GRMVGQASREITMFKP-----KADFVEQSSENIW 54
Query: 60 STLHNCILRL 69
+ N +
Sbjct: 55 QAVCNAVRDA 64
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 55.3 bits (134), Expect = 3e-08
Identities = 42/284 (14%), Positives = 87/284 (30%), Gaps = 64/284 (22%)
Query: 72 DHLKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQILRNHE 131
+ +Q+ + L +D++ + E +AA + + W++ +L+ +
Sbjct: 141 EIFRQIDKV-----LLPKDYLRLRMTG--EFASDMSDAAGTMWLDVAKRDWSDVMLQACD 193
Query: 132 PSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYHS-DAI 187
+P + I G L + G+ P+ GD + + A+
Sbjct: 194 L--SRDQMPALYEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDANQAM 250
Query: 188 VNISTSAQI-AFIDE----------------------MGASMNGGNCLATFVCTLQNWFK 224
+++ TS A + M ++ +CL +W
Sbjct: 251 LSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCL--------DWAA 302
Query: 225 EFGFNVPQNQIWAKLINASDPINHITRHHSTLRVTPTLLGDRHVIAES---ASVTHITIQ 281
+ + +D + P L G+R +T Q
Sbjct: 303 KL-TGLSNVPALIAAAQQADE------SAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQ 355
Query: 282 NLGVTK--LFVALCEGIINNIHDIMNRSVLHRSG--INRIIGIG 321
+ L A+ EG+ + D M+ V+H G + IG
Sbjct: 356 H---GPNELARAVLEGVGYALADGMD--VVHACGIKPQSVTLIG 394
Score = 50.7 bits (122), Expect = 8e-07
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTLHNC 65
+GID+GT+ VKV L++ ++++++ + P +P EQ+ +
Sbjct: 2 YIGIDLGTSGVKVILLNEQGE-VVAAQTEKLTVSRP-----HPLWSEQDPEQWWQATDRA 55
Query: 66 ILRLPKDH-LKQVKHI 80
+ L H L+ VK +
Sbjct: 56 MKALGDQHSLQDVKAL 71
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 55.3 bits (134), Expect = 3e-08
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
MS + ++G+D+GTT+ K L D N + ++S SK G E++ + I
Sbjct: 1 MSLKYIIGMDVGTTATKGVLYDING-KAVASVSKGYPLIQT-----KVGQAEEDPKLIFD 54
Query: 61 TLHNCILRLPKDHLKQVKHI 80
+ I L + ++ I
Sbjct: 55 AVQEIIFDLTQKIDGKIAAI 74
Score = 53.7 bits (130), Expect = 8e-08
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 47/185 (25%)
Query: 71 KDH----LKQVKHIESTNDLSFQDFIVAMLCDLQEPVMSNQNAASWGYFNCKLSTWNEQI 126
K+ Q + + +++I+ L + V AA G N K TW++++
Sbjct: 141 KNKKTEVFSQAQKW-----IGIKEYIIFRLTG--KLVTDTTMAAGTGILNLKTLTWDQEL 193
Query: 127 LRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTPINVALGDLQCSVLATLQYH 183
L LPKI ++ + ++ LGI+ DT I + D S +
Sbjct: 194 LD--ILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAID 251
Query: 184 S-DAIVNISTSAQI-AFIDE--------------------MGASMN-GGNCLATFVCTLQ 220
S +N+ TS I +D+ +G +N GG
Sbjct: 252 SDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVF-------- 303
Query: 221 NWFKE 225
NW ++
Sbjct: 304 NWARQ 308
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 51.6 bits (124), Expect = 3e-08
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 27/132 (20%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP------TEIIAFSDRAE 412
A +F V +G N ++S+ K QY +LFFY D C E
Sbjct: 5 MKAADFTYVTV-HG--DNSRMSRLKAQYTMLFFYDPD----CSNCRKFEKLFAEIPAFVE 57
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK--SMSIARSYGVLNEE 470
+ +V+A D + W + +K + + Y +
Sbjct: 58 MVENGTLRVLAIYPDE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDI---- 107
Query: 471 TGIPYRGLFIID 482
P ++++D
Sbjct: 108 RATPT--IYLLD 117
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 51.2 bits (123), Expect = 5e-08
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 23/129 (17%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
AP E + G+Y +L F+ + ++ +
Sbjct: 11 DLAPRIEFLGN-DA---KASFHNQLGRYTLLNFWAAYDAE------SRARNVQLANEVNK 60
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
F + + S D + + K + + Y +
Sbjct: 61 FGPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL----RKG 114
Query: 474 PYRGLFIID 482
F+I+
Sbjct: 115 FK--NFLIN 121
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 51.3 bits (123), Expect = 8e-08
Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
P + + + + K + + + F ++ CP E+ A++
Sbjct: 16 VPHTMSTMKTA-DN--RPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEKWAQD 66
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
K + +I ++ + GL +P+++D +IA++ + +
Sbjct: 67 AKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI----SVY 122
Query: 474 PYRGLFIIDDKQNLRQITI 492
P +I ++++I
Sbjct: 123 PSW--ALIGKDGDVQRIVK 139
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 50.8 bits (122), Expect = 9e-08
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 29/129 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
AP F+ + +G +N L+QY+G+ V+ ++F ++ CP E+ + +
Sbjct: 19 ALAPNFKLPTL-SG--ENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRLVKS 69
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
F K + V+A + + + R ++ LSD + + + YG +
Sbjct: 70 FPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGA----NRL 116
Query: 474 PYRGLFIID 482
P FI+D
Sbjct: 117 PD--TFIVD 123
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 39/140 (27%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
L K P + + L G+ V L+F P C ++
Sbjct: 3 GLAKYLPGATNL-LSKS--GEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEF 53
Query: 411 AEEFKK-INTQVIACSTD-------SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462
E+ N +V+ S D ++ + W +P ++ + +
Sbjct: 54 YEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVS-----------ELGK 102
Query: 463 SYGVLNEETGIPYRGLFIID 482
++GV IP L I+
Sbjct: 103 TFGV----ESIPT--LITIN 116
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 49.7 bits (119), Expect = 2e-07
Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 45/158 (28%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
L+K P E +++ G+ V +F P +
Sbjct: 3 GLDKYLPGIEKLRR-GD--GEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEF 53
Query: 411 AEEFKK-INTQVIACSTDS-------HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462
++F + N +V+ C+ D +F+ + W +P + + +++
Sbjct: 54 YDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQS-----------EAVQKLSK 102
Query: 463 SYGVLNEETGIPYRGLFIIDDKQ------NLRQITIND 494
+ V IP L +D R + D
Sbjct: 103 HFNV----ESIPT--LIGVDADSGDVVTTRARATLVKD 134
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 29/138 (21%)
Query: 352 DASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF----VCPTEIIAF 407
E + + + + G L+ KG+ V+ +DFT + +A
Sbjct: 6 PEDKIKEASIIDIQLKDL-KG--NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLAL 57
Query: 408 SDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDK---SMSIARSY 464
+ ++ ++ S D W N + + D S Y
Sbjct: 58 RELYNKYASQGFEIYQISLDG--DEHFWKTSADN------LPWVCVRDANGAYSSYISLY 109
Query: 465 GVLNEETGIPYRGLFIID 482
V T +P +F+++
Sbjct: 110 NV----TNLPS--VFLVN 121
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 51.9 bits (124), Expect = 2e-07
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 26/159 (16%)
Query: 345 EQDQAMRDASYALE--KPAPEFEGQA----VVNGQFKNIKLSQYKGQYVVLFFYPLDFTF 398
Q D + LE AP+ +G K I L +G+ V++ F + +
Sbjct: 39 AQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGN--KPIDLKSLRGKVVLIDF----WAY 92
Query: 399 VCPT---EIIAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPR--NKGGLGDMAIPIL 453
C I + +K VI T + N+ + G+ + PI
Sbjct: 93 SCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI---SYPIA 149
Query: 454 SDKSMSIARSYGVLNEETGIPYRGLFIIDDKQNLRQITI 492
D + + +Y P ++ID +R I
Sbjct: 150 LDNNYATWTNYRN----RYWPA--EYLIDATGTVRHIKF 182
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 48.5 bits (116), Expect = 4e-07
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCP---TEIIAFSDRAEE 413
+F + +G + +G+ V L F + CP E + S A
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEAPSLSQVAAA 52
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGI 473
+ IA D A + + L+D I Y V
Sbjct: 53 NPAVTFVGIATRADVG----AMQSFVSKYN----LNFTNLNDADGVIWARYNV----PWQ 100
Query: 474 PYRGLFIID 482
P
Sbjct: 101 PA--FVFYR 107
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 48.5 bits (116), Expect = 5e-07
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 357 LEKPAPEFEGQAV-VNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPT---EIIAFSDRAE 412
L +P PE G+ +NG + + + ++ F ++ C + ++ +
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTLIHF----WSISCHLCKEAMPQVNEFRD 56
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDKSMSIARSYGVLNEE 470
+++ V+A L I K + I PI D ++ ++
Sbjct: 57 KYQD-QLNVVAVHMPRSEDDLDPGKI---KETAAEHDITQPIFVDSDHALTDAFEN---- 108
Query: 471 TGIPYRGLFIIDDKQNLRQITI 492
+P ++ D LR
Sbjct: 109 EYVPA--YYVFDKTGQLRHFQA 128
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 48.5 bits (116), Expect = 5e-07
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 358 EKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAE 412
E PAP+F + NG + +KLS KGQ V+ ++F T+ CP EI +
Sbjct: 5 ENPAPDFTLNTL-NG--EVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55
Query: 413 EFKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+++ S D +A R G +P+L D + + YG TG
Sbjct: 56 AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT----TG 106
Query: 473 IPYRGLFIID 482
+P F+ID
Sbjct: 107 VPE--TFVID 114
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 48.1 bits (115), Expect = 6e-07
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 27/136 (19%)
Query: 361 APEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEEFK 415
+F + + +G + G+ V L F + CPT E A
Sbjct: 5 QLQFSAKTL-DG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEAPVVGQVAASHP 55
Query: 416 KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIPY 475
++ +A D + + N L+D S+ ++GV T P
Sbjct: 56 EVTFVGVA-GLDQVPAMQEFVN------KYPVKTFTQLADTDGSVWANFGV----TQQPA 104
Query: 476 RGLFIIDDKQNLRQIT 491
+D N+ +
Sbjct: 105 --YAFVDPHGNVDVVR 118
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 50.6 bits (121), Expect = 9e-07
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+S+ + ID+G T KV L D + R + PS G +
Sbjct: 3 LSTGATIVIDLGKTLSKVSLWDLDGRML-------DRQVRPSIPLEIDGIRRLDAPDTGR 55
Query: 61 TLHNCILRLPKDHLKQV 77
L + + R + +
Sbjct: 56 WLLDVLSRYADHPVTTI 72
Score = 47.1 bits (112), Expect = 1e-05
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 110 ASWG--YFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDW---LGINKDTP 164
++ + ++ R + I +G VG L G++ D
Sbjct: 171 LGCHSDLWDPQDGDFSPMAKRLGWAA----RFAPIVRAGDTVGALLPAIAERTGLSPDVQ 226
Query: 165 INVALGDLQCSVLATLQYHS 184
+ L D ++LA +
Sbjct: 227 VLAGLHDSNAALLAARGFAE 246
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 47.9 bits (114), Expect = 1e-06
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 26/146 (17%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP---TEII-AFSDRAEEF 414
P E + Q VN + + +G+ VV+ F +CP +
Sbjct: 7 APLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCPGCVNHGVPQAQKIHRMI 60
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDK------SMSIARSYGV 466
+ QVI + F H K + + I P+ D S + Y +
Sbjct: 61 DESQVQVIGLHSV--FEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRL 118
Query: 467 LNEETGIPYRGLFIIDDKQNLRQITI 492
G P + + D K +RQ+
Sbjct: 119 ----EGTPS--IILADRKGRIRQVQF 138
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 47.4 bits (113), Expect = 1e-06
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 32/163 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
K + V+ G +I L G+ V +F P D +
Sbjct: 4 KKFFPYSTN-VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKA 56
Query: 414 FK-KINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMS-IARSYGVLNEET 471
K N +V+ S D S + + L A+P K M + + V
Sbjct: 57 HAEKKNFEVMLISWDE--SAEDFKDYYAKMPWL---ALPFEDRKGMEFLTTGFDV----K 107
Query: 472 GIPYRGLFIID-DKQNLRQITINDLPVGRSVDETLRLVQAFQF 513
IP L ++ D N+ IT R++ + F +
Sbjct: 108 SIPT--LVGVEADSGNI--ITTQ----ARTMVVKDPEAKDFPW 142
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 47.8 bits (114), Expect = 1e-06
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 24/145 (16%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCP---TEII-AFSDRAEEF 414
APE + Q N ++ L+ +G+ +V+ F +CP I F
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCPGCVMHGIPLAQKVRAAF 58
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI--PILSDKS-----MSIARSYGVL 467
+ V+ T F H K L + I P+ D+ +Y +
Sbjct: 59 PEDKVAVLGLHTV--FEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQM- 115
Query: 468 NEETGIPYRGLFIIDDKQNLRQITI 492
G P L +ID +LR
Sbjct: 116 ---RGTPS--LLLIDKAGDLRAHHF 135
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein,
NPPSFA, national project protein structural and
functional analyses; 1.60A {Geobacillus kaustophilus}
Length = 196
Score = 47.1 bits (112), Expect = 3e-06
Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 46/200 (23%)
Query: 355 YALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFV---CPTEIIAFSDR- 410
+ L K AP F V++G ++L K + F+ CP +
Sbjct: 18 FPLGKQAPPFALTNVIDG--NVVRLEDVKSDAATVIM------FICNHCPF-VKHVQHEL 68
Query: 411 ---AEEFKKINTQVIA-CSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYG- 465
A ++ +A S D+ + P L D++ +A++Y
Sbjct: 69 VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA 128
Query: 466 -------VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAEHG 518
+ + + YRG +DD + N +PV + A + E
Sbjct: 129 ACTPDFYIFDRDLKCVYRGQ--LDDSRPN-----NGIPVTGES-----IRAALDALLEGR 176
Query: 519 EV---------CPAGWKPGS 529
V C WKP +
Sbjct: 177 PVPEKQKPSIGCSIKWKPSA 196
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 47.7 bits (114), Expect = 7e-06
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 108 NAASWGYFNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINV 167
NA + N W+E +L + G ++G + + V
Sbjct: 178 NATTTQLVNINSDDWDESLLA--WSGANKAWFGRPTHPGNVIGHWICPQGN--EIPVVAV 233
Query: 168 ALGDLQCSVLATLQYHSDAIVNISTSAQIAFIDEMGASMNGGNCLATFVC 217
A D +V+A+ S A S + + + N A
Sbjct: 234 ASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITN 283
Score = 44.2 bits (105), Expect = 7e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQ--ANIPSAHDSNPGAHEQNVRKI 58
M+ + + +D+G +S +V L RE S ++ N + G +V +
Sbjct: 1 MTFRNCVAVDLGASSGRVMLARYE-RECRSLTLREIHRFNNGLHSQ---NGYVTWDVDSL 56
Query: 59 VSTLHNCILRLPKDHLKQVKHI 80
S + + ++ + I
Sbjct: 57 ESAIRLGLNKVCAAG-IAIDSI 77
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 31/134 (23%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVL-FFY----PLDFTFVCPTEIIAFSDRAEE 413
PAP F G V +G K + KG+ ++ FF P C +EI +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYIVNFFATWCPP------CRSEIPDMVQVQKT 62
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSD-----KSMSIARSYGVLN 468
+ + + + N + +G + P++ ++ + G+
Sbjct: 63 WASRGFTFVGIAVNE--QLPNVKNYMKTQG----IIYPVMMATPELIRAFNGYIDGGI-- 114
Query: 469 EETGIPYRGLFIID 482
TGIP F+ID
Sbjct: 115 --TGIPT--SFVID 124
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 44.2 bits (105), Expect = 1e-05
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 30/134 (22%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDFT----FVCPTEIIAFSDRAE 412
K AP F G + + S +++ +Y++ L+F P +
Sbjct: 9 KSAPYFSLPNE-KG--EKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRLNK 60
Query: 413 EFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM---SIARSYGVLN 468
E+KK N ++ S D AW + ++ + D + A+ Y +
Sbjct: 61 EYKKNKNFAMLGISLDI--DREAWETAIKKDT----LSWDQVCDFTGLSSETAKQYAI-- 112
Query: 469 EETGIPYRGLFIID 482
+P ++
Sbjct: 113 --LTLPT--NILLS 122
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 45.1 bits (107), Expect = 2e-05
Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 53/201 (26%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPT--EIIAFSDR--- 410
L A +F L+++K +L F+ ++ +
Sbjct: 33 TLGTRAADFVLPDAGG---NLFTLAEFKDSPALLVA------FISNRCPFVVLIREALAK 83
Query: 411 -AEEFKKINTQVIA-CSTDSHF----SHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464
A ++ V+A S D+ + + G P L D S S+A++Y
Sbjct: 84 FAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYG----YGFPYLKDASQSVAKAY 139
Query: 465 G--------VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516
G + + E + Y G DD + N V + D L A V +
Sbjct: 140 GAACTPDFFLYDRERRLVYHGQ--FDDARPG-----NGKDVTGA-D----LRAAVDAVLK 187
Query: 517 HGEV---------CPAGWKPG 528
+V C W G
Sbjct: 188 GKDVGTTQVPSIGCNIKWTAG 208
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 42.7 bits (101), Expect = 4e-05
Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDF--TFVCPT---EIIAFSDRAEE 413
F + + G ++I + KGQ +L F ++ CP E+ F +
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPN-KGQKTIL-----HFWTSW-CPPCKKELPQFQSFYDA 62
Query: 414 FKKINTQVIACS-TDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETG 472
+ +++ + +S + + + + PI+ D + + Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKANK----LTFPIVLDSKGELMKEYHI----IT 114
Query: 473 IPYRGLFIIDDKQNLRQITI 492
IP F++++K + + I
Sbjct: 115 IPT--SFLLNEKGEIEKTKI 132
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 42.5 bits (100), Expect = 7e-05
Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 46/175 (26%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDR 410
+ K E + Q + G+ V +F P C +
Sbjct: 23 GVAKHLGEAL---KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEF 73
Query: 411 AEEFK-KINTQVIACSTDS-------HFSHLAWCNIPRNKGGLGDMAIPILSDKSMS-IA 461
E+ N ++I S D +++ + W ++IP + + +
Sbjct: 74 YEKHHDSKNFEIILASWDEEEDDFNAYYAKMPW------------LSIPFANRNIVEALT 121
Query: 462 RSYGVLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFVAE 516
+ Y V IP L + + +T R + + F + E
Sbjct: 122 KKYSV----ESIPT--LIGL-NADTGDTVTTR----ARHALTQDPMGEQFPWRDE 165
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 42.4 bits (100), Expect = 7e-05
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 34/137 (24%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLS--QYKGQYVVLFFYPLDF--TFVCP-----TEIIAFSD 409
K AP F G + I S +K + ++ ++F ++ +
Sbjct: 9 KYAPFFSLPNA-KG--EKITRSSDAFKQKSLL-----INFWASW-NDSISQKQSNSELRE 59
Query: 410 RAEEFKK-INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM---SIARSYG 465
+++KK ++ S D W + + + + D +A+ Y
Sbjct: 60 IYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----LDWEQVCDFGGLNSEVAKQYS 113
Query: 466 VLNEETGIPYRGLFIID 482
+ IP ++
Sbjct: 114 I----YKIPA--NILLS 124
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 42.4 bits (100), Expect = 9e-05
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEE 413
P+ + +G K KLS ++G+ +++ + P C E+ A + +
Sbjct: 38 LKLPDLAFEDA-DG--KPKKLSDFRGKTLLVNLWATWCVP------CRKEMPALDELQGK 88
Query: 414 FKKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAI---PILSDKSMSIARSYGVLNEE 470
N +V+A + D+ + + K L + + +D+ + + +
Sbjct: 89 LSGPNFEVVAINIDTR-------DPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRA 141
Query: 471 TGIPYRGLFIID 482
G+P ++D
Sbjct: 142 LGMPT--SVLVD 151
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
+ ++GIDIG T +K ++D + L + +P+ + P + + V +V+
Sbjct: 9 HKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFR-----VPTPQPATPESVAEAVALVVA 63
Query: 61 TL 62
L
Sbjct: 64 EL 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 73/457 (15%), Positives = 142/457 (31%), Gaps = 140/457 (30%)
Query: 164 PINVALGDLQCSVL-----------------ATLQYHSDAIVN---ISTSAQ-----IAF 198
P+ ++ G L+ +L L ++ +T A+ + +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 199 IDEMGASMNGGNCLATFVCTLQNWFKEF------GFNVPQNQIWAKLINASDPINHITRH 252
+ +S+ + + F L EF G ++ + + AKL+ +D + +
Sbjct: 68 V----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTT--LVKT 119
Query: 253 HSTLR--VTPTLLGDRHV--IAESASVTHITIQNLGVTKLFVALC--EGIIN-------N 299
++ +T ++ R + SA + G +L A+ +G + +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAV---GEGNAQLV-AIFGGQGNTDDYFEELRD 175
Query: 300 IHDIMNRSVLHRSGINRIIG-IGSCLTRNHILQHYIERIY--GLQLIVEQDQAMRDASYA 356
++ + + +I L+ E+++ GL ++ + + + S
Sbjct: 176 LYQT------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL----EWLENPS-- 223
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVV----LFFYPLDF------TFVCPTEI-- 404
P ++ ++ I + Q YVV L F P + +
Sbjct: 224 -NTPDKDYLLSIPIS--CPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 405 ---IAFSDRAEEFKKINTQVIACSTDSHFSHLAWCNIPRNKGGL-GDMAIPILSDKSMSI 460
IA +D E F + I L + G+ A P S +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITV--------LFFI-------GVRCYEAYPNTSLPPSIL 324
Query: 461 ARSYGVLNEETGIP-----YRGLFIIDDKQNLRQIT-IND-LPVGRSVDETLRLVQAF-Q 512
S + N E G+P L +Q + N LP G+ V + LV
Sbjct: 325 EDS--LENNE-GVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKN 376
Query: 513 FVAEHGEVC-PAGWKPGS--------KTMKADPSGSQ 540
V V P P S + KA Q
Sbjct: 377 LV-----VSGP----PQSLYGLNLTLRKAKAPSGLDQ 404
Score = 32.7 bits (74), Expect = 0.37
Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 90/237 (37%)
Query: 328 HILQHYIERIYGLQLIVEQDQAMRDASYALEKPAPE---------FEGQAVVNGQFKNIK 378
I ++Y I+ + + D EK E F + + +
Sbjct: 1683 RIRENYSAMIF---------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL------LS 1727
Query: 379 LSQY---------KGQYVVL---FFYPLDFTF-----------VCPTEIIAFSD------ 409
+Q+ K + L P D TF ++++
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 410 -RAEEFKKINTQVIACSTD----SHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSY 464
R T +A D S++ +A N R A+ + ++ + +
Sbjct: 1788 YRGM------TMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEALQYVVER---VGKRT 1837
Query: 465 GVL------NEETGIPY------RGLFIID------DKQNLRQITINDLPVGRSVDE 503
G L N E Y R L D + L++I I +L S++E
Sbjct: 1838 GWLVEIVNYNVENQQ-YVAAGDLRAL---DTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 28.9 bits (64), Expect = 6.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 20 LIDAN-------TREELSSESKDTQANIPSAHDSNPGAHEQNVRK-IVSTLHNCILRLPK 71
L+ A+ + +S +KD Q IP +D+ G+ + + I + +CI+RLP
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQ--IP-VYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 72 DHLKQVKHIESTNDLSF 88
+ ++T+ L F
Sbjct: 489 -KWETTTQFKATHILDF 504
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 40.1 bits (94), Expect = 3e-04
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 364 FEGQAVVNGQFKNIKLSQY--KGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEEFKK 416
+G +V + ++ + +F P C +D E
Sbjct: 4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP------CRGFTPILADMYSELVD 57
Query: 417 INT--QVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
+ ++I S+D S G +AIP S + ++ YG+ TGIP
Sbjct: 58 DSAPFEIIFVSSDR--SEDDMFQYMMESHGDW-LAIPYRSGPASNVTAKYGI----TGIP 110
Query: 475 YRGLFIID 482
L I+
Sbjct: 111 A--LVIVK 116
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 40.5 bits (95), Expect = 4e-04
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVL-FFY----PLDFTFVCPTEIIAFSDRAEE 413
+ P+ G ++ + I LS ++ Q V+L + P C +E EE
Sbjct: 35 QQLPDIGGDSL-MEEGTQINLSDFENQVVILNAWGQWCAP------CRSESDDLQIIHEE 87
Query: 414 FKK------INTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVL 467
+ V+ + + S + + G + P + D A S G +
Sbjct: 88 LQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPPFMTAASLGGV 142
Query: 468 NEETGIPYRGLFIID 482
+ IP ++D
Sbjct: 143 P-ASVIPT--TIVLD 154
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVST 61
Q VL IDIG + VK+ L + + S V +
Sbjct: 4 EDQTVLAIDIGGSHVKIGLSTDGEERK-----------VESGKTMTGPEMVAAVTAMAKD 52
Query: 62 L 62
+
Sbjct: 53 M 53
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 37.7 bits (88), Expect = 0.002
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 359 KPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFF----YPLDFTFVCPTEIIAFSDRAEEF 414
+P P+F G + + + V++F+ C E AEE
Sbjct: 9 EPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLHRVAEET 59
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIARSYGVLNEETGIP 474
+ D+ L + + D+ +A + V G P
Sbjct: 60 GVPFYVISREPRDTREVVLEY----MKTYPRFIPLLASDRDRPHEVAARFKV----LGQP 111
Query: 475 YRGLFIID 482
+ F++D
Sbjct: 112 W--TFVVD 117
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 39.3 bits (92), Expect = 0.003
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
+++V+ +D G T+ I +E A+
Sbjct: 6 NDNRIVMTLDAGGTNFVFSAIQGG-KEIADPVVLPACADCLDK 47
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 29/131 (22%)
Query: 360 PAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFY-----PLDFTFVCPTEIIAFSDRAEEF 414
A E G + L K ++ + P C E+ A S +
Sbjct: 4 SADELAGWK--DN--TPQSLQSLKAPVRIVNLWATWCGP------CRKEMPAMSKWYKAQ 53
Query: 415 KKINTQVIACSTDSHFSHLAWCNIPRNKGGLGDMAIPILSDKSM---SIARSYGVLNEET 471
KK + ++ + D+ + + + + ++ PI + ++YG N
Sbjct: 54 KKGSVDMVGIALDTSDNIGNF--LKQTP-----VSYPIWRYTGANSRNFMKTYG--NTVG 104
Query: 472 GIPYRGLFIID 482
+P+ +
Sbjct: 105 VLPF--TVVEA 113
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 38.7 bits (91), Expect = 0.004
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQA 38
++LGID+G TSVK L+ E ++ T
Sbjct: 16 YFQGMILGIDVGGTSVKFGLVTPE-GEIQNATRFMTAD 52
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 36.2 bits (84), Expect = 0.010
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 357 LEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF---VCPTEIIAFSDRAEE 413
L F N KN+ L KG+ + F FT +CP +D ++
Sbjct: 9 LNYEVEPFT---FQNQDGKNVSLESLKGEVWLADFI---FTNCETICPPMTAHMTDLQKK 62
Query: 414 FKKINTQV 421
K N V
Sbjct: 63 LKAENIDV 70
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 36.2 bits (84), Expect = 0.011
Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 60/203 (29%)
Query: 356 ALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPT--EIIAFSDR--- 410
LE P + E +LSQ+ + + F +C +
Sbjct: 8 PLESPLIDAELPDPRG---GRYRLSQFHEPLLAVVF-------MCNHCPYVKGSIGELVA 57
Query: 411 -AEEFKKINTQVIA-CSTDS------HFSHLAWCNIPRNKGGLGDMAIPILSDKSMSIAR 462
AE ++ + + D + + P L D++ +A+
Sbjct: 58 LAERYRG-KVAFVGINANDYEKYPEDAPEKM------AAFAEEHGIFFPYLLDETQEVAK 110
Query: 463 SYG--------VLNEETGIPYRGLFIIDDKQNLRQITINDLPVGRSVDETLRLVQAFQFV 514
+Y + +E + Y G ++D + V L A + +
Sbjct: 111 AYRALRTPEVFLFDERRLLRYHGR--VNDNPK------DPSKVQSHD-----LEAAIEAL 157
Query: 515 AEHGEV---------CPAGWKPG 528
E C W+PG
Sbjct: 158 LRGEEPPLKEAPAIGCTIKWRPG 180
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 36.8 bits (86), Expect = 0.012
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
VV G+D+G T ++ CL A E L E K T I
Sbjct: 5 QHNVVAGVDMGATHIRFCLRTAE-GETLHCEKKRTAEVIAPG 45
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 36.1 bits (84), Expect = 0.021
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDAN 24
+ ++GID+G T++K ++ +
Sbjct: 3 AMDKKIIGIDLGGTTIKFAILTTD 26
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 36.4 bits (85), Expect = 0.023
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 115 FNCKLSTWNEQILRNHE-PSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
+ W+E++ + + +LP+I+ + + G + + + + PI +GD Q
Sbjct: 193 MDINTLQWDEKMCKIFNIT--NMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQ 250
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 35.5 bits (82), Expect = 0.023
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 341 QLIVEQDQAMRDASYALEKPAPEFEGQAVVNGQFKNIKLSQYKGQYVVLFFYPLDFTF-- 398
+ + Q +A + Y F + + G++ +++F F+
Sbjct: 1 RRLETQKEAEANRGYGKPSLGGPFH---LEDMYGNEFTEKNLLGKFSIIYF---GFSNCP 54
Query: 399 -VCPTE---IIAFSDRAEEFKKINTQVIACSTD 427
+CP E + + + I Q + + D
Sbjct: 55 DICPDELDKLGLWLNTLSSKYGITLQPLFITCD 87
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 35.6 bits (82), Expect = 0.029
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDS 46
LGID+G+T+ K ++ +E ++ S
Sbjct: 5 TLGIDVGSTASKCIILKDG-KEIVAKSLVAVGTGTSGPARS 44
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 35.7 bits (83), Expect = 0.030
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVS 60
S+ + G DIG T + + + D+ R + T + A V ++V
Sbjct: 21 QSNAMYYGFDIGGTKIALGVFDST-RRLQWEKRVPTPHT-------SYSAFLDAVCELVE 72
Query: 61 TL 62
Sbjct: 73 EA 74
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 35.2 bits (81), Expect = 0.035
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 6 VLGIDIGTTSVKVCLIDAN 24
+G+DIG+T+ K ++
Sbjct: 3 TMGLDIGSTASKGVILKNG 21
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 35.6 bits (83), Expect = 0.037
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
FN K W++++L P +LP+++ S + G ++ LG + P++ GD Q
Sbjct: 187 FNIKKLDWDDELLE--LFDIPESVLPEVRESSEVYGYTKKELLG--AEIPVSGDAGDQQ 241
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural
genomics, center for structural genomics of infec
diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 34.9 bits (81), Expect = 0.050
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
S+ + G D+G T ++ + E +++E T +
Sbjct: 21 QSNAMYYGFDVGGTKIEFGAFNEK-LERVATERVPTPTDDYPL 62
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4,
AP sucrose, structural genomics, PSI; HET: SUC; 2.01A
{Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Length = 292
Score = 34.8 bits (81), Expect = 0.053
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPS 42
+ IDIG T +K + + + L S T N+
Sbjct: 6 IATIDIGGTGIKFASLTPD-GKILDKTSISTPENLED 41
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 35.2 bits (82), Expect = 0.054
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
+N + W++++ P +LP+++ G G PI GD Q
Sbjct: 214 YNIAENAWDDELTE--VLRVPKEMLPEVKDCAADFGVTDPSLFG--AAIPILGVAGDQQ 268
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 35.2 bits (82), Expect = 0.057
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
FN W+ ++L P LLP+++PS G + LG PI LGD Q
Sbjct: 190 FNLHTLAWDPELLE--ALGIPAALLPEVRPSDGDFGETLPELLG--APVPIRGVLGDQQ 244
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 34.4 bits (80), Expect = 0.087
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
+ +W E I + PL +LP I+ S + G L PI LGD Q
Sbjct: 193 MDLDTLSWREDIAA--DMGIPLSMLPDIRSSSEVYGHGRPRGLV--PGVPIAGILGDQQ 247
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 33.5 bits (77), Expect = 0.088
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 371 NGQFKNIKLSQYKGQYVVLFFYPLDFTF---VCPTE---IIAFSDRAEEFKKINTQVIAC 424
G + LSQ++ + V+LFF FT VCPT + ++ + QVI
Sbjct: 25 QGPVR---LSQFQDKVVLLFF---GFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFV 78
Query: 425 STD 427
S D
Sbjct: 79 SVD 81
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 32.7 bits (75), Expect = 0.16
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 375 KNIKLSQYKGQYVVLFFYPLDFTF---VCPTEI----IAFSDRAEEFKKINTQVIACSTD 427
+ Y GQ+++++F FT VCP E+ + + + S D
Sbjct: 14 ERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID 70
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 32.4 bits (74), Expect = 0.20
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 375 KNIKLSQYKGQYVVLFFYPLDFTF---VCPTEIIAFSDRAEEFKKINTQV 421
+L KG+ ++L +T CP + +
Sbjct: 19 NEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDF 65
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein
structure initiative; 2.20A {Escherichia coli} SCOP:
c.55.1.10 c.55.1.10
Length = 289
Score = 32.9 bits (76), Expect = 0.21
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSAHDSNPGAHEQNVRKIVSTL 62
L IDIG T + LI A+ + T A P A + +VS L
Sbjct: 3 TLAIDIGGTKLAAALIGAD-GQIRDRRELPTPA------SQTPEALRDALSALVSPL 52
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 32.3 bits (74), Expect = 0.22
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 366 GQAVVNGQF-------KNIKLSQYKGQYVVLFFYPLDFTF---VCPTEI----IAFSDRA 411
G G F + + ++GQ+V+++F FT +CP E+
Sbjct: 1 GSFTGQGDFHLLDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLE 57
Query: 412 EEFKKINTQVIACSTD 427
E Q + + D
Sbjct: 58 AEPGLPPVQPVFITVD 73
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 33.3 bits (77), Expect = 0.23
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVG-TLTRDWLGINKDTPINVALGDLQ 173
+N W+++IL + P +LP+++ + + G T + + G + PI GD Q
Sbjct: 193 YNIHKLEWDQEILD--LLNIPSSMLPEVKSNSEVYGHTRSYRFYG--SEVPIAGMAGDQQ 248
>2yhw_A Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase; transferase,
sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A
{Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Length = 343
Score = 32.8 bits (75), Expect = 0.23
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDAN 24
+ L +D+G T+++V ++
Sbjct: 28 GTLSALAVDLGGTNLRVAIVSMK 50
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 33.3 bits (77), Expect = 0.24
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVG-TLTRDWLGINKDTPINVALGDLQ 173
FN W++++L + P ++LP+++ S + G T+ + G ++ PI GD Q
Sbjct: 194 FNIHDLEWDDELLE--LLTVPKNMLPEVKASSEVYGKTIDYHFYG--QEVPIAGVAGDQQ 249
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 32.9 bits (76), Expect = 0.25
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 6 VLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
V+G+D+G T + + D LS T
Sbjct: 3 VVGLDLGGTKIAAGVFDGK--RLLSKVVVPTPKEGGER 38
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar
kinase, RIBO H fold, sugar kinase/HSP70/actin
superfamily, domain rotati conformation; HET: NAG NDG;
1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB:
2ch6_A*
Length = 347
Score = 32.7 bits (74), Expect = 0.27
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 3 SQVVLGIDIGTTSVKVCLIDAN 24
+ + G++ G T +V L+ +
Sbjct: 5 AAIYGGVEGGGTRSEVLLVSED 26
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 31.1 bits (70), Expect = 0.31
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKK 416
G + V FF D+ +V + + + + F +
Sbjct: 46 LGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAE 79
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 32.9 bits (76), Expect = 0.31
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 115 FNCKLSTWNEQILRNHEPSFPLHLLPKIQPSGTIVGTLTRDWLGINKDTPINVALGDLQ 173
FN W++++L P +LP+++ S + G D G PI+ GD Q
Sbjct: 191 FNIHTLDWDDKMLE--VLDIPREMLPEVRRSSEVYGQTNIDGKG-GTRIPISGIAGDQQ 246
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 32.2 bits (73), Expect = 0.38
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDAN 24
S+ ++ GI+ G T + +
Sbjct: 1 SNAMLGGIEAGGTXFVCAVGRED 23
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 31.9 bits (72), Expect = 0.44
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 1 MSSQVVLGIDIGTTSVKVCLID 22
++++ V+ +D G K+ +
Sbjct: 4 ITNEYVMTLDAGKYETKLIGKN 25
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily,
ribonuc fold, sugar kinase, glucose, phosphoryl
transfer, transferase; HET: BGC; 1.65A {Sulfolobus
tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Length = 299
Score = 31.7 bits (72), Expect = 0.47
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDANTRE 27
M +++G+D G T K D
Sbjct: 1 MM--IIVGVDAGGTKTKAVAYDCEGNF 25
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 31.8 bits (73), Expect = 0.58
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 5 VVLGIDIGTTSVKVCLIDAN 24
+ +G+DIG T + ++D
Sbjct: 3 LTIGVDIGGTKIAAGVVDEE 22
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin
secretion; HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 31.7 bits (72), Expect = 0.66
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 1 MSSQVVLGIDIGTTSVKVCLIDAN 24
LG++IG +++K+ + N
Sbjct: 10 RPRVEALGLEIGASALKLVEVSGN 33
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 31.2 bits (70), Expect = 0.75
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MSSQVVLGIDIGTTSVKVC 19
MS+ V+ +D G VK
Sbjct: 1 MSNVYVMALDFGNGFVKGK 19
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 29.6 bits (66), Expect = 0.77
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 383 KGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
+Y + FF + F+ P ++ + +++ K N +
Sbjct: 38 PNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPNKR 75
>2ews_A Pantothenate kinase; PANK, structural genomics, structural
genomics consortium, S transferase; HET: ANP; 2.05A
{Staphylococcus aureus subsp} SCOP: c.55.1.14
Length = 287
Score = 31.2 bits (70), Expect = 0.86
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDANTR 26
S + +GID G T +K+ N R
Sbjct: 18 GSHMKVGIDAGGTLIKIVQEQDNQR 42
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative;
2.20A {Chromobacterium violaceum} SCOP: c.55.1.5
c.55.1.5
Length = 305
Score = 31.0 bits (70), Expect = 0.88
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 2 SSQVVLGIDIGTTSVKVCLIDANTRE 27
S + ++G+D G T ++ L ++
Sbjct: 9 SIRYLIGVDGGGTGTRIRLHASDGTP 34
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 30.7 bits (70), Expect = 1.4
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
L + +G + + L + E L D
Sbjct: 109 QFLSMRLGRGYLTIALHELGG-EVLIDTKIDIHEIDQDD 146
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 29.4 bits (65), Expect = 1.5
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 368 AVVNGQFKNIKLSQYKGQYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKINTQ 420
A+V K G V +F F+ + +++A ++ F
Sbjct: 30 AMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLATFN 82
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 29.9 bits (68), Expect = 1.5
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 370 VNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVC-----PTEIIAFSDRAEEFKKINTQVIA 423
V +F ++ K + VV+F P +T VC P + ++FK +
Sbjct: 28 VESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVP----PYKHNIDKFKAKGVDSVI 83
Query: 424 C 424
C
Sbjct: 84 C 84
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA
binding P helix-turn-helix, phosphotransferase system;
2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10
c.55.1.10 PDB: 3bp8_A
Length = 406
Score = 30.3 bits (69), Expect = 1.5
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 5 VVLGIDIGTTSVKVCLIDANTREELSSESKDTQANIPSA 43
L + I + + L D ++ + + ES++
Sbjct: 86 HYLSLRISRGEIFLALRDLSS-KLVVEESQELALKDDLP 123
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 29.8 bits (68), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 157 LGINKDTPINVALGD-LQCSVLATLQYHSDAI-VNIS 191
+G NKDTP+ D L C + + ++ I +NIS
Sbjct: 140 IGKNKDTPVEQGKDDYLIC--MEKIYAYAGYIAINIS 174
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin,
divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB:
1e4g_T* 1e4f_T* 4a2b_A*
Length = 419
Score = 29.3 bits (66), Expect = 3.5
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 1 MSSQVVLGIDIGTTSVKVCLI 21
+ IDIG+ +K L+
Sbjct: 5 SKTVFYTSIDIGSRYIK-GLV 24
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.3 bits (65), Expect = 4.1
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 498 GRSVDETLRLVQAFQFVAEHGEVCPAGWKPGSKTMK 533
G+ D + + F F G+V W G TMK
Sbjct: 64 GKKFDSSHDRNEPFVFSLGKGQVIK-AWDIGVATMK 98
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.2
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 460 IARSYG--VLNEETGIPYR----GLFIIDD---KQNLRQITIN-DLPVGRSVDETLRLVQ 509
+ Y +L E +GI R LF + K+ ++++ + DL + ET
Sbjct: 890 VKAKYETSIL-EHSGI--RLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE--- 943
Query: 510 AFQFVAEHGEVCPAG 524
QF +HG+
Sbjct: 944 --QFKHQHGDKVDIF 956
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular
chaperone, actin-like ATPase domain, beta/BETA/alpha
swiveling domain, hydrolase; 2.40A {Klebsiella
pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.1 bits (65), Expect = 5.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 4 QVVLGIDIGTTSVKVCL--IDANTREELSSES------KDTQANIPSAHDS 46
++ GIDIG + +V L R ++S K T+ NI +
Sbjct: 2 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGMKGTRDNIAGTLAA 52
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
protein structure initiative, joint center structural
genomics, JCSG; 2.46A {Thermotoga maritima} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 380
Score = 28.4 bits (64), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 5 VVLGIDIGTTSVKVCLID 22
VLGI++ + CLID
Sbjct: 88 YVLGIEVTRDEIAACLID 105
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural
genomics, NEW YORK structura genomics research
consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 27.6 bits (62), Expect = 8.8
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 362 PEFEGQAVVNGQFKNIKLSQY-KGQYVVLFFYPLDFTFVC-----PTEIIAFSDRAEEFK 415
P + + KG+ VVLF P FT C P + + +
Sbjct: 33 PNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLP----GYLENRDAIL 88
Query: 416 KINTQVIAC 424
IA
Sbjct: 89 ARGVDDIAV 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,217,289
Number of extensions: 486302
Number of successful extensions: 1238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 154
Length of query: 547
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 449
Effective length of database: 3,965,535
Effective search space: 1780525215
Effective search space used: 1780525215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)