BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2240
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 254 bits (648), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 141/169 (83%)
Query: 14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
V+MERF + ADVVIVG GPAG++AA RLKQLA + K+L+VCLVEKAA +G H LSGA +
Sbjct: 27 VNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL 86
Query: 74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
DP A EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHGNYVVRLGH+
Sbjct: 87 DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHL 146
Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
V W+GEQAEA+GVE+YPG A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 147 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
DVVI+GGGPAG AAI+ QL VEK ++GG L+ I AL
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLG------FNTACVEKRGKLGGTCLNVGCIPSKAL 55
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 9 SDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE------ 62
+ ++ D+++F V+DV+IVG G +G++AA + K+ +LKVC++E +
Sbjct: 53 TSRYFKDLDKFA-VSDVIIVGAGSSGLSAAYVIA----KNRPDLKVCIIESSVAPGGGSW 107
Query: 63 VGGHILSGAVIDPIA---LNELLPDWKDLG 89
+GG + S V+ A L EL ++D G
Sbjct: 108 LGGQLFSAMVMRKPAHLFLQELEIPYEDEG 137
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
VVI+GGG G+AAA +++ ++ L++ LVE + VGG I
Sbjct: 8 VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKI 50
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
D++++G GP G AAIR QL +KV +VEK +GG L I AL E
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLG------MKVGVVEKEKALGGTCLRVGCIPSKALLE 53
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 29/121 (23%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKV----------------------CLVEKAA 61
D V++GGGP GMA+A K+ A + L C+ +K
Sbjct: 44 DYVVIGGGPGGMASA---KEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLM 100
Query: 62 EVGGHILSGAVIDPIA----LNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPG 117
GH+ S +D A + L DWK L + + + F+Y+T + + + G
Sbjct: 101 HYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING 160
Query: 118 M 118
+
Sbjct: 161 L 161
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
ADV ++G GP G AAI+ QL K +EK +GG L+ I AL
Sbjct: 28 ADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEKNETLGGTCLNVGCIPSKAL 77
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
Length = 474
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
ADV ++G GP G AAI+ QL K +EK +GG L+ I AL
Sbjct: 7 ADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEKNETLGGTCLNVGCIPSKAL 56
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
ADV ++G GP G AAI+ QL K +EK +GG L+ I AL
Sbjct: 7 ADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEKNETLGGTCLNVGCIPSKAL 56
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdb
Length = 464
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
D++++G GP G AAIR QL LKV VE A EVGG L+ I AL
Sbjct: 8 DLIVIGTGPGGYHAAIRAAQLG------LKVLAVE-AGEVGGVCLNVGCIPTKAL 55
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
DV IVG GP+G+AAA L++ L V ++E VGG + +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAG------LSVAVIEARDRVGGRTWTDTI 49
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
DVVIVG GP+G+ AA LK+ L V ++E VGG + +
Sbjct: 9 DVVIVGAGPSGLTAARELKKAG------LSVAVLEARDRVGGRTWTDTI 51
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
DV IVG GP+G+AAA L++ L V ++E VGG + +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAG------LSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
DV IVG GP+G+AAA L++ L V ++E VGG + +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAG------LSVAVIEARDRVGGRTWTDTI 49
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 491
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
D++++G GP G AI+ QL KV +VEK + GG L+ I AL
Sbjct: 27 DLIVIGSGPGGYVCAIKAAQLG------XKVAVVEKRSTYGGTCLNVGCIPSKAL 75
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKD 48
+VI+G GP G+ AA+RL +L K+
Sbjct: 12 IVIIGAGPTGLGAAVRLTELGYKN 35
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKD-------GKELKVCL 56
DVV++G GP G AAIR QL K GKE KV L
Sbjct: 5 DVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVAL 44
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
E DV+IVG GPAG+ AA L + + +LKV +++K
Sbjct: 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQK-PDLKVRIIDK 43
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 32.0 bits (71), Expect = 0.21, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
E DV+IVG GPAG+ AA L + + +LKV +++K
Sbjct: 6 ESYCDVLIVGAGPAGLMAARVLSEYVRQK-PDLKVRIIDK 44
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG----HILSGAVID--PIA 77
+V +VGGG +G+A A L+ + L+E +A +GG H L+G +++ P +
Sbjct: 18 NVAVVGGGISGLAVAHHLRS------RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNS 71
Query: 78 LNELLPDWKDLGAPLNT--------PVHEDKFAYLTKSKRIGIPILP 116
+ P + L A LN P + ++ Y T+ + +P P
Sbjct: 72 FLDREPATRALAAALNLEGRIRAADPAAKRRYVY-TRGRLRSVPASP 117
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 5 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 46
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 5 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 46
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
Length = 461
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 10 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 51
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 10 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 51
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 10 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 51
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+GM A +R Q A++ G E+ VC EK A+ GG
Sbjct: 10 IAILGAGPSGM-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 51
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILSGAVIDPIAL 78
E D+++VGGG AA + A+K E K+ LV+KA+ E G + G A+
Sbjct: 20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLS----AI 75
Query: 79 NELLPD 84
N L D
Sbjct: 76 NTYLGD 81
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
VV++GGGPAG+ +A L++ KV ++E GG + +
Sbjct: 14 VVVLGGGPAGLCSAFELQKAG------YKVTVLEARTRPGGRVWT 52
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+++G GP G AAI+ QL LK L+EK
Sbjct: 5 DVIVIGAGPGGYVAAIKSAQLG------LKTALIEK 34
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG---HILSGAVIDPIA 77
D DVV++GGG +G++A L++ L +++ A GG H + A
Sbjct: 2 DSVDVVVIGGGQSGLSAGYFLRR------SGLSYVILDAEASPGGAWQHAWHSLHLFSPA 55
Query: 78 LNELLPDWKDLGAPLNTPVHEDKFAYLTK-SKRIGIPILPGMPMNNHGNYVVRLGHVVK- 135
+P W + P + AYL + ++ +P+L + + ++ RL V +
Sbjct: 56 GWSSIPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARD 115
Query: 136 ---WLGEQA-------------EAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179
WL E G+E + GI Y G+ +G G
Sbjct: 116 GRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSG 175
Query: 180 S 180
+
Sbjct: 176 A 176
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 24 DVVIVGGGPAGMAAAI 39
DVVI+GGGPAG+ AAI
Sbjct: 10 DVVIIGGGPAGLTAAI 25
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
+ ++VG GP G AAIR QL + KV +VEK +GG L+ I AL
Sbjct: 5 ETLVVGAGPGGYVAAIRAAQLGQ------KVTIVEK-GNLGGVCLNVGCIPSKAL 52
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV++VG G +G+ A RL++L V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGR------SVHVIETAGDVGG 53
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV++VG G +G+ A RL++L V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGR------SVHVIETAGDVGG 53
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV++VG G +G+ A RL++L V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGR------SVHVIETAGDVGG 53
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV++VG G +G+ A RL++L V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGR------SVHVIETAGDVGG 53
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 8 DVLVIGAGPTGLGAAKRLNQI 28
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++G GP G+ AA RL Q+
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQI 32
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DVV++G GP G AAIR QL
Sbjct: 5 DVVVLGAGPGGYVAAIRAAQL 25
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DVV++G GP G AAIR QL
Sbjct: 7 DVVVLGAGPGGYVAAIRAAQL 27
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At
2.06 A Resolution
Length = 475
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
+VIVGGG G+AAA AE+ +L + L+E +GG +
Sbjct: 7 LVIVGGGITGLAAAY----YAERAFPDLNITLLEAGERLGGKV 45
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 31/156 (19%)
Query: 13 DVDMERFEDVA-----------DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
+ D E F ++A VV+VG G +G++AA L G +V ++E +
Sbjct: 13 ETDYEEFLEIARNGLKATSNPKHVVVVGAGMSGLSAAYVL------SGAGHQVTVLEASE 66
Query: 62 EVGGHILSGAVIDPIALNELLPDWKDLGAPLNTP-VHEDKFAYLTKSKRIGIPILPGMPM 120
GG + + DW P+ P H Y+ ++ G+ +
Sbjct: 67 RAGGRVRT--------YRNDKEDWYANLGPMRLPEKHRIVREYI---RKFGLQLNEFSQE 115
Query: 121 NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASE 156
N++ Y ++ ++ K +GE + GV YP P+ E
Sbjct: 116 NDNAWYFIK--NIRKRVGEVKKDPGVLKYPVKPSEE 149
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
DV IVG G +G+AAA L++ L V ++E VGG + +
Sbjct: 7 DVAIVGAGISGLAAATALRKAG------LSVAVIEARDRVGGRTWTDTI 49
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 42 KQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-PIALNELLP 83
+ L E G +LKV + A V G+ L+GA ++ +ALN+ LP
Sbjct: 338 QWLVEGSGTDLKVLCRDTAGRVIGYALTGAAVNEKLALNKELP 380
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVGGH 66
+ I+G GP+G A +R Q A++ G E+ VC EK A+ GG
Sbjct: 5 IAILGAGPSGX-AQLRAFQSAQEKGAEIPELVCF-EKQADWGGQ 46
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+IVG GPAG+ A +L +++ C+VE+
Sbjct: 34 DVLIVGCGPAGLTLAAQLAAFP-----DIRTCIVEQ 64
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA----EVGGHILSG--AVIDPI 76
+ V I+GGGPAG A + L +L V + E++A VG +L G ++++ +
Sbjct: 24 SKVAIIGGGPAGSVAGLTLHKLGH------DVTIYERSAFPRYRVGESLLPGTMSILNRL 77
Query: 77 ALNE 80
L E
Sbjct: 78 GLQE 81
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 24 DVVIVGGGPAGMAAAIRL 41
DV+I+GGGP GMA A+ L
Sbjct: 28 DVLILGGGPVGMALALDL 45
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 9 SDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA------AE 62
+ ++ DM + + DVV+VG G AG++AA + + ++V ++E++ A
Sbjct: 27 TRRYMTDMITYAET-DVVVVGAGSAGLSAAYEISK-----NPNVQVAIIEQSVSPGGGAW 80
Query: 63 VGGHILSGAVI 73
+GG + S ++
Sbjct: 81 LGGQLFSAMIV 91
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK----DGKELKVCLVEK 59
DV++VGGGP+G++AA+ L + K DG KV V +
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSR 42
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 24 DVVIVGGGPAGMAAAIRL 41
DV+I+GGGP GMA A+ L
Sbjct: 28 DVLILGGGPVGMALALDL 45
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
+ D +IVG G G A LK+L + KV ++EK +GG+ +
Sbjct: 1 MYDYIIVGSGLFGAVCANELKKLNK------KVLVIEKRNHIGGNAYT 42
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK------AAEVGGHILSGAVI 73
D+VIVG G G++AA L L +L++ +VE A +GG + S V+
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLR----PDLRITIVEAGVAPGGGAWLGGQLFSAMVM 132
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 110 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 146
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 110 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 146
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 159 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 195
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 159 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 195
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 110 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 146
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 110 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 146
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 27.7 bits (60), Expect = 3.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+I+G G +G+AAA +L+ + V L+E VGG +
Sbjct: 111 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRV 147
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD 178
H K L E +A+G+ I S+ YHG G+ T DVG KD
Sbjct: 312 HAKKVLAEGCKAVGL-IQEDEELSKYYYHGVSHFLGLDTHDVGTYKD 357
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 22 VADVVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKAA 61
+ ++VIVGGG AG MAA+ ++ L + + + L+E AA
Sbjct: 5 IKNIVIVGGGTAGWMAASYLVRALQQ----QANITLIESAA 41
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DVV++GGG +G+AAA K L+E ++ V ++E VGG + NE +
Sbjct: 23 DVVVIGGGISGLAAA---KLLSE---YKINVLVLEARDRVGGRTYT-------VRNEHV- 68
Query: 84 DWKDLGAPLNTPVHEDKFAYLTKSKRIGI 112
W D+G P L SK +GI
Sbjct: 69 KWVDVGGAYVGPTQNR---ILRLSKELGI 94
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 22 VADVVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKAA 61
+ ++VIVGGG AG MAA+ ++ L + + + L+E AA
Sbjct: 5 IKNIVIVGGGTAGWMAASYLVRALQQ----QANITLIESAA 41
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D +IVG GP G+ AA RL + + KV L+E+
Sbjct: 4 DYIIVGAGPGGIIAADRLSEAGK------KVLLLER 33
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D +IVG GP G+ AA RL + + KV L+E+
Sbjct: 9 DYIIVGAGPGGIIAADRLSEAGK------KVLLLER 38
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+++G GPAG AA L K G KV +VEK
Sbjct: 7 DVLVIGAGPAGTVAA----SLVNKSG--FKVKIVEK 36
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV I+GGGPAG++A + A + G LK + + GG I S + I+ +
Sbjct: 6 DVAIIGGGPAGLSAGL----YATRGG--LKNVVXFEKGXPGGQITSSSEIENYPGVAQVX 59
Query: 84 DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRL 130
D G P E + K + +G+ + N+ G++ ++L
Sbjct: 60 D----GISFXAPWSEQCXRFGLKHEXVGV---EQILKNSDGSFTIKL 99
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
VV++GGG +G+AA+ L + KV LVE + +GG I S
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPP----KVVLVESSERLGGWIRS 45
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
D+ D+ I+GGGP G+ AA + + ++E ++GG +
Sbjct: 13 DMRDLTIIGGGPTGIFAAFQCGM------NNISCRIIESMPQLGGQL 53
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 74 DPIALNELLPDWKDLGAPLNTPVHED 99
+P+AL E + KD+ APL TP D
Sbjct: 912 EPVALIETVRQMKDVNAPLPTPFKVD 937
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEK 47
++ DVVI+G GPA AAI L + + K
Sbjct: 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK 29
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex
With Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 20 EDVADVVIVGGGPAGMAAAIRL 41
E DV+I+G G AG++ A+RL
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRL 27
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 20 EDVADVVIVGGGPAGMAAAIRL 41
E DV+I+G G AG++ A+RL
Sbjct: 6 EHSCDVLIIGSGAAGLSLALRL 27
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
V+I+G G +G+AAA +L+ + V L+E VGG + +
Sbjct: 281 VIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVAT 319
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
DV+I+GGG AG +AA +L + + LK+ LV+
Sbjct: 8 DVLIIGGGFAGSSAAYQLSR------RGLKILLVD 36
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 26.9 bits (58), Expect = 7.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 74 DPIALNELLPDWKDLGAPLNTPVHED 99
+P+AL E + KD+ APL TP D
Sbjct: 923 EPVALIETVRQXKDVNAPLPTPFKVD 948
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 17 ERFEDVAD---VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
E+F + V+IVG GP+G AA L + V L + A ++GGH+
Sbjct: 381 EKFRQTKNKDSVLIVGAGPSGSEAARVLMESG------YTVHLTDTAEKIGGHL 428
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 17 ERFEDVAD---VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
E+F + V+IVG GP+G AA L + V L + A ++GGH+
Sbjct: 381 EKFRQTKNKDSVLIVGAGPSGSEAARVLMESG------YTVHLTDTAEKIGGHL 428
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 137 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT 170
LG Q + V IYPG S LY G +V GI T
Sbjct: 212 LGYQHPSDYVWIYPGNSTSAKLYPGQENVHGILT 245
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
++VG GP G+ AA+ L L +V LVEK + H
Sbjct: 95 CLVVGAGPCGLRAAVELALLGA------RVVLVEKRIKFSRH 130
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 137 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT 170
LG Q + V IYPG S LY G +V GI T
Sbjct: 213 LGYQHPSDYVWIYPGNSTSAKLYPGQENVHGILT 246
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
E A+AM V+ G S+VL + + GI GDV + +G P
Sbjct: 275 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
++VG GP G+ AA+ L L +V LVEK + H
Sbjct: 87 CLVVGAGPCGLRAAVELALLGA------RVVLVEKRIKFSRH 122
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
E A+AM V+ G S+VL + + GI GDV + +G P
Sbjct: 275 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
E A+AM V+ G S+VL + + GI GDV + +G P
Sbjct: 275 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
E A+AM V+ G S+VL + + GI GDV + +G P
Sbjct: 275 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
E A+AM V+ G S+VL + + GI GDV + +G P
Sbjct: 275 ELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP 317
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
Length = 213
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 67 ILSGAVIDPIALNELLPD------WKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPM 120
+ GA I ++E+ PD W L P+ DKF+Y +SK+ G +
Sbjct: 48 VRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKK-GTKFHQSIGK 106
Query: 121 NNHGNYVVRLGHVVKWLGEQAEAMGVEI------YPGIPASEVLYHGDGSVKGIATGDV 173
+ Y Q + +G I G +SE++++ +G +G+A D+
Sbjct: 107 HYSSGY------------GQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,844
Number of Sequences: 62578
Number of extensions: 263896
Number of successful extensions: 969
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 229
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)