Query psy2240
Match_columns 182
No_of_seqs 161 out of 1177
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 19:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 100.0 1.2E-27 2.7E-32 170.3 11.6 161 20-182 74-234 (621)
2 COG0644 FixC Dehydrogenases (f 99.9 3.6E-21 7.8E-26 142.6 10.5 143 21-180 2-150 (396)
3 PRK10157 putative oxidoreducta 99.8 1.1E-19 2.5E-24 135.7 12.3 152 21-180 4-162 (428)
4 PRK10015 oxidoreductase; Provi 99.8 1.6E-19 3.5E-24 134.9 11.3 152 21-180 4-162 (429)
5 COG2081 Predicted flavoprotein 99.8 5.1E-18 1.1E-22 121.4 12.4 151 21-181 2-167 (408)
6 PRK04176 ribulose-1,5-biphosph 99.8 1.7E-17 3.6E-22 115.9 14.4 130 21-180 24-171 (257)
7 PRK08013 oxidoreductase; Provi 99.8 5.9E-18 1.3E-22 125.9 10.4 149 22-180 3-166 (400)
8 PRK07364 2-octaprenyl-6-methox 99.8 9E-18 2E-22 125.5 10.5 152 18-180 14-179 (415)
9 PF01946 Thi4: Thi4 family; PD 99.8 1.4E-17 3.1E-22 110.3 10.1 131 21-181 16-164 (230)
10 PRK06184 hypothetical protein; 99.8 1.8E-17 3.8E-22 126.6 12.1 147 21-180 2-166 (502)
11 COG1635 THI4 Ribulose 1,5-bisp 99.7 7.9E-17 1.7E-21 106.5 12.9 131 21-181 29-177 (262)
12 TIGR00292 thiazole biosynthesi 99.7 8.9E-17 1.9E-21 111.9 13.8 130 21-180 20-168 (254)
13 PRK08773 2-octaprenyl-3-methyl 99.7 2.2E-17 4.7E-22 122.6 10.8 151 20-180 4-167 (392)
14 PF03486 HI0933_like: HI0933-l 99.7 2.4E-17 5.2E-22 121.7 10.1 148 23-181 1-166 (409)
15 PRK06617 2-octaprenyl-6-methox 99.7 3.1E-17 6.8E-22 121.0 10.1 145 23-180 2-158 (374)
16 PRK05714 2-octaprenyl-3-methyl 99.7 4.3E-17 9.4E-22 121.5 10.7 151 22-180 2-166 (405)
17 PRK06834 hypothetical protein; 99.7 1.8E-16 4E-21 120.2 14.1 146 21-180 2-154 (488)
18 COG0654 UbiH 2-polyprenyl-6-me 99.7 9.7E-17 2.1E-21 118.9 12.3 144 22-180 2-160 (387)
19 PF01494 FAD_binding_3: FAD bi 99.7 4.6E-17 1E-21 119.1 10.1 150 22-180 1-170 (356)
20 PRK08244 hypothetical protein; 99.7 1.8E-16 3.9E-21 120.8 12.7 146 22-180 2-157 (493)
21 PRK06996 hypothetical protein; 99.7 1E-16 2.2E-21 119.2 10.6 148 21-180 10-172 (398)
22 PRK09126 hypothetical protein; 99.7 1.5E-16 3.2E-21 118.2 10.8 152 21-180 2-165 (392)
23 PRK07190 hypothetical protein; 99.7 2.7E-16 5.9E-21 119.2 12.0 147 22-180 5-163 (487)
24 TIGR01988 Ubi-OHases Ubiquinon 99.7 9.1E-17 2E-21 119.0 9.4 147 24-180 1-161 (385)
25 PRK08850 2-octaprenyl-6-methox 99.7 1.2E-16 2.7E-21 119.0 10.1 151 20-180 2-166 (405)
26 TIGR02032 GG-red-SF geranylger 99.7 4E-16 8.6E-21 111.5 12.3 140 23-180 1-146 (295)
27 PRK07333 2-octaprenyl-6-methox 99.7 1.2E-16 2.5E-21 119.1 9.4 149 23-180 2-165 (403)
28 PRK08849 2-octaprenyl-3-methyl 99.7 3E-16 6.5E-21 116.2 11.1 150 22-180 3-165 (384)
29 PRK06185 hypothetical protein; 99.7 2.9E-16 6.2E-21 117.2 11.0 151 20-180 4-167 (407)
30 PRK07045 putative monooxygenas 99.7 6.6E-16 1.4E-20 114.6 12.4 149 21-180 4-163 (388)
31 PLN00093 geranylgeranyl diphos 99.7 4.7E-16 1E-20 116.8 11.5 143 20-180 37-197 (450)
32 PRK08020 ubiF 2-octaprenyl-3-m 99.7 3.1E-16 6.7E-21 116.4 10.4 150 21-180 4-167 (391)
33 PRK06126 hypothetical protein; 99.7 4E-16 8.8E-21 120.3 11.3 153 21-180 6-186 (545)
34 TIGR01984 UbiH 2-polyprenyl-6- 99.7 1.4E-16 3.1E-21 117.8 8.5 146 24-180 1-160 (382)
35 PRK06183 mhpA 3-(3-hydroxyphen 99.7 3.7E-16 7.9E-21 120.3 10.4 151 20-180 8-172 (538)
36 TIGR03329 Phn_aa_oxid putative 99.7 3E-15 6.5E-20 113.2 15.1 38 122-159 174-211 (460)
37 PRK07494 2-octaprenyl-6-methox 99.7 3.1E-16 6.7E-21 116.3 9.6 150 20-180 5-165 (388)
38 TIGR02023 BchP-ChlP geranylger 99.7 8.2E-16 1.8E-20 114.0 11.8 137 23-180 1-153 (388)
39 PRK08132 FAD-dependent oxidore 99.7 6.9E-16 1.5E-20 119.0 11.5 152 20-180 21-183 (547)
40 PRK07588 hypothetical protein; 99.7 5.3E-16 1.1E-20 115.2 9.9 145 24-180 2-156 (391)
41 PRK06847 hypothetical protein; 99.7 9.1E-16 2E-20 113.3 11.0 147 21-180 3-161 (375)
42 PRK07608 ubiquinone biosynthes 99.7 9.9E-16 2.2E-20 113.6 11.3 149 21-180 4-165 (388)
43 PRK11445 putative oxidoreducta 99.7 2.2E-15 4.8E-20 110.3 12.7 141 23-180 2-155 (351)
44 PRK07538 hypothetical protein; 99.7 4E-15 8.7E-20 111.2 13.7 144 24-180 2-163 (413)
45 PRK08163 salicylate hydroxylas 99.7 7.2E-16 1.6E-20 114.7 9.7 150 21-180 3-164 (396)
46 COG0579 Predicted dehydrogenas 99.7 5.4E-15 1.2E-19 108.7 14.0 156 21-180 2-209 (429)
47 PRK06475 salicylate hydroxylas 99.7 1.3E-15 2.9E-20 113.3 11.0 148 23-180 3-165 (400)
48 PRK08243 4-hydroxybenzoate 3-m 99.7 4.1E-16 8.8E-21 115.8 8.0 145 22-180 2-161 (392)
49 PF01266 DAO: FAD dependent ox 99.7 3.1E-15 6.6E-20 109.5 12.2 150 24-180 1-201 (358)
50 PLN02985 squalene monooxygenas 99.6 3.1E-15 6.8E-20 114.0 11.5 150 20-180 41-206 (514)
51 TIGR01989 COQ6 Ubiquinone bios 99.6 1.7E-15 3.8E-20 113.8 9.9 151 23-180 1-181 (437)
52 PRK06481 fumarate reductase fl 99.6 4.3E-14 9.4E-19 108.0 17.1 143 17-167 56-225 (506)
53 PRK05868 hypothetical protein; 99.6 2.7E-15 5.9E-20 110.6 10.0 146 24-180 3-158 (372)
54 PRK08294 phenol 2-monooxygenas 99.6 1.3E-14 2.7E-19 113.2 13.9 152 19-180 29-208 (634)
55 TIGR01373 soxB sarcosine oxida 99.6 2.4E-14 5.2E-19 106.9 14.6 155 20-180 28-239 (407)
56 PRK06753 hypothetical protein; 99.6 3.9E-15 8.4E-20 109.9 10.1 142 24-180 2-150 (373)
57 PRK05732 2-octaprenyl-6-methox 99.6 2.7E-15 5.8E-20 111.6 8.9 151 21-180 2-167 (395)
58 PRK07121 hypothetical protein; 99.6 1.8E-14 3.9E-19 109.9 13.0 45 18-68 16-60 (492)
59 PRK07236 hypothetical protein; 99.6 7.7E-15 1.7E-19 108.8 10.6 142 20-180 4-152 (386)
60 PF12831 FAD_oxidored: FAD dep 99.6 9.8E-16 2.1E-20 114.7 5.4 137 24-180 1-148 (428)
61 TIGR01813 flavo_cyto_c flavocy 99.6 7.7E-14 1.7E-18 105.1 15.6 136 24-167 1-166 (439)
62 PRK11101 glpA sn-glycerol-3-ph 99.6 4E-14 8.7E-19 109.0 14.3 152 21-180 5-209 (546)
63 PRK08958 sdhA succinate dehydr 99.6 5.7E-14 1.2E-18 108.8 15.0 142 21-169 6-181 (588)
64 PRK11728 hydroxyglutarate oxid 99.6 4.2E-14 9.1E-19 105.1 13.9 153 22-180 2-202 (393)
65 TIGR01377 soxA_mon sarcosine o 99.6 6.3E-14 1.4E-18 103.8 14.8 151 23-180 1-199 (380)
66 PRK07804 L-aspartate oxidase; 99.6 8.9E-14 1.9E-18 107.0 15.7 142 19-167 13-180 (541)
67 PRK11259 solA N-methyltryptoph 99.6 8.9E-14 1.9E-18 102.8 14.9 57 124-180 142-202 (376)
68 PTZ00139 Succinate dehydrogena 99.6 6.9E-14 1.5E-18 108.9 14.8 143 20-169 27-204 (617)
69 PLN02172 flavin-containing mon 99.6 6.1E-14 1.3E-18 105.6 14.0 146 20-180 8-171 (461)
70 PRK12835 3-ketosteroid-delta-1 99.6 8.6E-14 1.9E-18 107.8 15.1 45 17-67 6-50 (584)
71 TIGR02028 ChlP geranylgeranyl 99.6 1.6E-14 3.6E-19 107.3 10.8 140 23-180 1-158 (398)
72 PRK08274 tricarballylate dehyd 99.6 1.4E-13 3.1E-18 104.4 15.8 141 20-168 2-167 (466)
73 PRK12266 glpD glycerol-3-phosp 99.6 1.2E-13 2.6E-18 105.5 15.1 44 19-68 3-46 (508)
74 PLN00128 Succinate dehydrogena 99.6 1.1E-13 2.4E-18 107.8 14.9 143 19-168 47-224 (635)
75 PRK12845 3-ketosteroid-delta-1 99.6 2.6E-13 5.6E-18 104.6 16.6 45 17-68 11-55 (564)
76 PRK13369 glycerol-3-phosphate 99.6 8.4E-14 1.8E-18 106.4 13.8 156 19-180 3-213 (502)
77 TIGR02360 pbenz_hydroxyl 4-hyd 99.6 2.5E-14 5.3E-19 106.2 10.4 147 22-180 2-161 (390)
78 TIGR01320 mal_quin_oxido malat 99.6 8.7E-14 1.9E-18 105.4 13.1 41 123-163 170-210 (483)
79 PF04820 Trp_halogenase: Trypt 99.6 9.9E-14 2.2E-18 104.4 12.7 57 123-180 146-209 (454)
80 PRK09078 sdhA succinate dehydr 99.6 2.5E-13 5.4E-18 105.6 14.9 142 21-169 11-187 (598)
81 PRK12839 hypothetical protein; 99.6 3.6E-13 7.7E-18 104.1 15.4 44 19-68 5-48 (572)
82 PF00890 FAD_binding_2: FAD bi 99.5 1E-13 2.2E-18 103.8 11.9 138 24-169 1-178 (417)
83 PRK07057 sdhA succinate dehydr 99.5 5.8E-13 1.3E-17 103.4 16.3 142 20-168 10-185 (591)
84 PRK06452 sdhA succinate dehydr 99.5 4.1E-13 8.9E-18 103.8 15.1 141 21-169 4-173 (566)
85 PRK12837 3-ketosteroid-delta-1 99.5 4.8E-13 1E-17 102.4 15.3 44 17-67 2-45 (513)
86 PRK08275 putative oxidoreducta 99.5 3.6E-13 7.8E-18 104.0 14.7 144 20-168 7-174 (554)
87 PLN02463 lycopene beta cyclase 99.5 8.1E-14 1.8E-18 104.4 10.7 136 21-180 27-167 (447)
88 PRK06175 L-aspartate oxidase; 99.5 2.5E-13 5.4E-18 101.9 13.1 138 21-167 3-164 (433)
89 PRK06854 adenylylsulfate reduc 99.5 6.5E-13 1.4E-17 103.4 15.7 141 20-168 9-169 (608)
90 PRK05192 tRNA uridine 5-carbox 99.5 3.4E-13 7.3E-18 103.3 13.7 141 20-180 2-155 (618)
91 TIGR03219 salicylate_mono sali 99.5 6.6E-14 1.4E-18 104.7 9.8 145 24-180 2-157 (414)
92 PRK12409 D-amino acid dehydrog 99.5 4.2E-13 9.1E-18 100.3 14.0 35 23-63 2-36 (410)
93 PRK08641 sdhA succinate dehydr 99.5 4.5E-13 9.8E-18 104.0 14.5 142 21-169 2-175 (589)
94 PRK07395 L-aspartate oxidase; 99.5 4.2E-13 9.1E-18 103.3 13.9 154 19-180 6-196 (553)
95 PLN02697 lycopene epsilon cycl 99.5 3E-13 6.6E-18 103.0 12.6 134 21-180 107-246 (529)
96 PRK06263 sdhA succinate dehydr 99.5 6E-13 1.3E-17 102.6 14.4 141 20-168 5-171 (543)
97 TIGR00551 nadB L-aspartate oxi 99.5 7.2E-13 1.6E-17 101.0 14.6 137 22-167 2-164 (488)
98 PRK01747 mnmC bifunctional tRN 99.5 7.3E-13 1.6E-17 104.4 15.1 151 22-180 260-461 (662)
99 PF13738 Pyr_redox_3: Pyridine 99.5 3.2E-13 7E-18 91.6 11.3 126 26-179 1-135 (203)
100 PLN02815 L-aspartate oxidase 99.5 1.2E-12 2.6E-17 101.3 15.6 153 20-180 27-221 (594)
101 PTZ00383 malate:quinone oxidor 99.5 4.8E-13 1E-17 101.4 12.9 55 126-180 206-272 (497)
102 PRK07573 sdhA succinate dehydr 99.5 1.1E-12 2.4E-17 102.6 15.0 140 21-168 34-206 (640)
103 PRK12844 3-ketosteroid-delta-1 99.5 4.7E-13 1E-17 103.3 12.8 43 19-67 3-45 (557)
104 PLN02464 glycerol-3-phosphate 99.5 1.1E-12 2.3E-17 102.4 14.8 42 21-68 70-111 (627)
105 PRK06134 putative FAD-binding 99.5 2.5E-12 5.4E-17 99.8 16.6 44 19-68 9-52 (581)
106 PRK12843 putative FAD-binding 99.5 1.9E-12 4.2E-17 100.4 16.0 47 16-68 10-56 (578)
107 KOG2820|consensus 99.5 1.4E-12 3E-17 91.7 13.2 147 18-170 3-193 (399)
108 PRK12834 putative FAD-binding 99.5 1.9E-12 4.1E-17 100.0 15.3 41 21-67 3-45 (549)
109 PRK05257 malate:quinone oxidor 99.5 1.7E-12 3.7E-17 98.6 14.7 41 123-163 175-216 (494)
110 PRK08205 sdhA succinate dehydr 99.5 1.6E-12 3.6E-17 100.9 14.9 140 21-168 4-180 (583)
111 PRK07843 3-ketosteroid-delta-1 99.5 9.2E-13 2E-17 101.7 13.4 42 20-67 5-46 (557)
112 PRK05945 sdhA succinate dehydr 99.5 4.9E-13 1.1E-17 103.7 11.8 141 21-167 2-170 (575)
113 PRK00711 D-amino acid dehydrog 99.5 9.9E-13 2.1E-17 98.5 13.1 56 124-180 194-255 (416)
114 PLN02661 Putative thiazole syn 99.5 1.8E-12 3.9E-17 93.2 13.5 118 21-168 91-209 (357)
115 KOG1399|consensus 99.5 1.2E-12 2.5E-17 97.6 12.6 134 21-180 5-151 (448)
116 PRK07803 sdhA succinate dehydr 99.5 1.3E-12 2.9E-17 102.0 13.3 139 21-167 7-186 (626)
117 TIGR01790 carotene-cycl lycope 99.5 1.2E-12 2.7E-17 97.2 12.5 133 24-180 1-139 (388)
118 PRK12842 putative succinate de 99.5 6E-12 1.3E-16 97.7 16.7 42 20-67 7-48 (574)
119 TIGR03364 HpnW_proposed FAD de 99.5 2.1E-12 4.6E-17 95.2 13.6 39 23-67 1-39 (365)
120 PRK13339 malate:quinone oxidor 99.5 3.1E-12 6.7E-17 96.8 14.5 38 123-160 176-214 (497)
121 PTZ00367 squalene epoxidase; P 99.5 2.9E-13 6.4E-18 104.0 9.2 125 20-159 31-161 (567)
122 KOG1298|consensus 99.5 1.3E-13 2.8E-18 98.4 6.6 144 20-179 43-205 (509)
123 TIGR01812 sdhA_frdA_Gneg succi 99.5 3.1E-12 6.8E-17 99.2 14.7 136 24-167 1-164 (566)
124 PF05834 Lycopene_cycl: Lycope 99.5 5.5E-13 1.2E-17 98.4 10.0 133 24-180 1-140 (374)
125 PRK08401 L-aspartate oxidase; 99.5 5.8E-12 1.3E-16 95.5 14.9 149 23-180 2-174 (466)
126 PRK08626 fumarate reductase fl 99.4 3.5E-12 7.6E-17 100.0 13.9 40 21-66 4-43 (657)
127 PRK06069 sdhA succinate dehydr 99.4 3.4E-12 7.3E-17 99.1 13.6 139 21-167 4-173 (577)
128 PF01134 GIDA: Glucose inhibit 99.4 2.5E-12 5.4E-17 93.8 12.0 139 24-180 1-150 (392)
129 PRK09231 fumarate reductase fl 99.4 5.5E-12 1.2E-16 97.9 14.4 141 21-167 3-169 (582)
130 PRK08071 L-aspartate oxidase; 99.4 5.8E-12 1.3E-16 96.4 14.2 150 21-180 2-189 (510)
131 KOG2614|consensus 99.4 7.7E-13 1.7E-17 95.4 8.8 39 22-66 2-40 (420)
132 PLN02927 antheraxanthin epoxid 99.4 2.2E-12 4.8E-17 100.2 11.8 149 20-180 79-246 (668)
133 TIGR01176 fum_red_Fp fumarate 99.4 6E-12 1.3E-16 97.5 14.2 141 22-168 3-169 (580)
134 COG0578 GlpA Glycerol-3-phosph 99.4 3.1E-12 6.7E-17 96.3 12.2 152 20-180 10-223 (532)
135 PRK09077 L-aspartate oxidase; 99.4 1.4E-11 3E-16 94.9 15.3 141 20-168 6-181 (536)
136 PF00743 FMO-like: Flavin-bind 99.4 2.9E-12 6.2E-17 98.0 11.5 113 24-162 3-117 (531)
137 TIGR00275 flavoprotein, HI0933 99.4 1.7E-12 3.7E-17 96.6 9.7 127 26-162 1-136 (400)
138 PRK08255 salicylyl-CoA 5-hydro 99.4 3.8E-13 8.1E-18 107.3 6.4 135 24-180 2-139 (765)
139 TIGR02061 aprA adenosine phosp 99.4 2.3E-11 4.9E-16 94.5 15.7 139 24-169 1-166 (614)
140 PRK07512 L-aspartate oxidase; 99.4 1.5E-11 3.2E-16 94.3 13.8 150 21-180 8-196 (513)
141 COG0665 DadA Glycine/D-amino a 99.4 3.2E-11 6.9E-16 89.6 15.0 42 20-67 2-43 (387)
142 TIGR01424 gluta_reduc_2 glutat 99.4 1.7E-11 3.7E-16 92.6 13.0 53 22-81 2-54 (446)
143 PRK05249 soluble pyridine nucl 99.4 3.5E-11 7.5E-16 91.4 14.6 53 20-78 3-55 (461)
144 PRK13977 myosin-cross-reactive 99.4 9.2E-11 2E-15 89.4 16.6 45 22-68 22-66 (576)
145 TIGR01811 sdhA_Bsu succinate d 99.4 2.2E-11 4.8E-16 94.8 13.5 138 25-169 1-171 (603)
146 PRK06467 dihydrolipoamide dehy 99.4 3E-11 6.4E-16 91.8 13.8 56 20-81 2-57 (471)
147 PRK06416 dihydrolipoamide dehy 99.4 3.3E-11 7.1E-16 91.5 14.0 52 21-79 3-54 (462)
148 PF06039 Mqo: Malate:quinone o 99.4 4.5E-11 9.8E-16 88.0 13.6 57 125-181 175-244 (488)
149 PRK06116 glutathione reductase 99.4 2.5E-11 5.5E-16 91.8 12.7 51 21-78 3-53 (450)
150 PRK06115 dihydrolipoamide dehy 99.3 4.3E-11 9.4E-16 90.9 13.3 56 21-82 2-57 (466)
151 TIGR02485 CobZ_N-term precorri 99.3 4.6E-11 1E-15 90.0 13.4 135 27-168 1-161 (432)
152 PRK05976 dihydrolipoamide dehy 99.3 7E-11 1.5E-15 90.0 13.9 55 20-81 2-56 (472)
153 PRK06370 mercuric reductase; V 99.3 2.7E-11 5.8E-16 92.0 11.4 56 19-81 2-57 (463)
154 TIGR01421 gluta_reduc_1 glutat 99.3 2.3E-11 5E-16 92.0 11.0 52 21-79 1-52 (450)
155 PTZ00306 NADH-dependent fumara 99.3 1.3E-10 2.8E-15 96.5 16.0 43 20-68 407-449 (1167)
156 TIGR01789 lycopene_cycl lycope 99.3 1.7E-11 3.7E-16 90.3 9.8 131 24-180 1-136 (370)
157 TIGR01292 TRX_reduct thioredox 99.3 6.5E-11 1.4E-15 84.9 12.2 86 23-161 1-86 (300)
158 PTZ00058 glutathione reductase 99.3 1.5E-10 3.2E-15 89.3 14.8 55 20-81 46-100 (561)
159 COG2072 TrkA Predicted flavopr 99.3 3.4E-11 7.4E-16 90.5 10.8 125 20-180 6-142 (443)
160 COG1249 Lpd Pyruvate/2-oxoglut 99.3 1.1E-10 2.4E-15 87.4 12.9 58 20-83 2-59 (454)
161 COG1053 SdhA Succinate dehydro 99.3 1.5E-10 3.2E-15 89.0 13.8 154 20-180 4-201 (562)
162 TIGR00136 gidA glucose-inhibit 99.3 3.7E-11 8.1E-16 92.2 10.3 139 23-180 1-152 (617)
163 PRK13800 putative oxidoreducta 99.3 1.7E-10 3.7E-15 93.7 14.5 37 20-62 11-47 (897)
164 PRK07251 pyridine nucleotide-d 99.3 1.7E-10 3.7E-15 87.1 12.7 51 21-77 2-53 (438)
165 KOG2844|consensus 99.3 1.5E-10 3.2E-15 88.3 11.7 59 120-179 176-240 (856)
166 PF13450 NAD_binding_8: NAD(P) 99.2 2.1E-11 4.5E-16 67.7 5.3 36 27-68 1-36 (68)
167 PRK06327 dihydrolipoamide dehy 99.2 1.6E-10 3.4E-15 88.1 11.8 51 20-76 2-58 (475)
168 TIGR03143 AhpF_homolog putativ 99.2 2E-10 4.3E-15 89.0 12.3 38 21-65 3-40 (555)
169 PRK15317 alkyl hydroperoxide r 99.2 2.9E-10 6.2E-15 87.5 12.7 106 21-180 210-320 (517)
170 PLN02507 glutathione reductase 99.2 5.9E-10 1.3E-14 85.3 14.3 54 21-80 24-86 (499)
171 PRK07818 dihydrolipoamide dehy 99.2 7.2E-10 1.6E-14 84.3 14.2 51 21-78 3-53 (466)
172 COG3380 Predicted NAD/FAD-depe 99.2 1.1E-10 2.4E-15 80.1 8.6 38 24-67 3-40 (331)
173 PRK05335 tRNA (uracil-5-)-meth 99.2 3.6E-10 7.9E-15 83.5 11.9 114 23-158 3-126 (436)
174 COG0492 TrxB Thioredoxin reduc 99.2 4E-10 8.8E-15 80.5 11.3 107 21-180 2-113 (305)
175 TIGR01350 lipoamide_DH dihydro 99.2 1.1E-09 2.3E-14 83.3 14.4 49 22-77 1-49 (461)
176 PRK14694 putative mercuric red 99.2 2.9E-10 6.3E-15 86.5 11.1 55 20-81 4-58 (468)
177 PLN02546 glutathione reductase 99.2 6.6E-10 1.4E-14 85.8 12.4 55 21-81 78-141 (558)
178 PTZ00052 thioredoxin reductase 99.2 5.8E-10 1.3E-14 85.4 11.5 50 22-77 5-62 (499)
179 TIGR03140 AhpF alkyl hydropero 99.2 9.9E-10 2.2E-14 84.5 12.8 88 20-161 210-297 (515)
180 COG0029 NadB Aspartate oxidase 99.2 8.8E-10 1.9E-14 81.6 11.8 150 24-181 9-196 (518)
181 PF00070 Pyr_redox: Pyridine n 99.1 2E-09 4.2E-14 62.0 10.5 77 24-170 1-77 (80)
182 TIGR02053 MerA mercuric reduct 99.1 1.7E-09 3.8E-14 82.2 13.2 52 23-81 1-52 (463)
183 PRK14727 putative mercuric red 99.1 2.6E-09 5.6E-14 81.5 14.0 55 20-80 14-68 (479)
184 KOG0042|consensus 99.1 3.8E-11 8.2E-16 89.4 3.5 42 21-68 66-107 (680)
185 KOG2404|consensus 99.1 9.2E-10 2E-14 77.6 9.8 151 24-181 11-206 (477)
186 COG1233 Phytoene dehydrogenase 99.1 1.2E-10 2.5E-15 88.9 5.4 42 21-68 2-43 (487)
187 PRK13748 putative mercuric red 99.1 4.4E-09 9.6E-14 81.9 13.8 54 21-81 97-150 (561)
188 PRK09897 hypothetical protein; 99.1 5.7E-09 1.2E-13 80.0 14.0 38 23-64 2-39 (534)
189 TIGR01423 trypano_reduc trypan 99.1 1.5E-09 3.2E-14 82.8 10.8 56 21-82 2-66 (486)
190 TIGR01438 TGR thioredoxin and 99.1 5.1E-09 1.1E-13 79.9 13.6 54 22-81 2-63 (484)
191 COG0445 GidA Flavin-dependent 99.1 8.3E-10 1.8E-14 82.7 8.7 144 21-180 3-156 (621)
192 KOG0029|consensus 99.1 2.7E-10 5.8E-15 86.5 6.2 43 20-68 13-55 (501)
193 PF13434 K_oxygenase: L-lysine 99.1 2.4E-10 5.1E-15 83.2 5.7 141 22-181 2-159 (341)
194 PRK10262 thioredoxin reductase 99.1 5.2E-09 1.1E-13 76.0 12.5 38 21-65 5-42 (321)
195 PF13454 NAD_binding_9: FAD-NA 99.1 1.8E-08 3.8E-13 65.6 13.3 143 26-181 1-156 (156)
196 PRK07208 hypothetical protein; 99.0 3.9E-10 8.5E-15 86.1 5.6 42 20-67 2-43 (479)
197 PRK08010 pyridine nucleotide-d 99.0 5.6E-10 1.2E-14 84.4 6.1 48 21-74 2-50 (441)
198 PRK07845 flavoprotein disulfid 99.0 1.8E-08 3.9E-13 76.8 14.0 49 24-79 3-51 (466)
199 KOG2852|consensus 99.0 1.9E-09 4E-14 74.8 7.7 137 22-164 10-179 (380)
200 KOG1335|consensus 99.0 3.7E-09 8.1E-14 76.1 8.9 58 21-84 38-95 (506)
201 KOG2853|consensus 99.0 1.9E-08 4.1E-13 71.6 12.1 42 20-63 84-125 (509)
202 TIGR01372 soxA sarcosine oxida 99.0 1.3E-08 2.9E-13 83.7 13.0 40 21-66 162-201 (985)
203 TIGR00137 gid_trmFO tRNA:m(5)U 99.0 9.1E-09 2E-13 76.6 10.9 36 23-64 1-36 (433)
204 PRK06292 dihydrolipoamide dehy 99.0 1.6E-09 3.5E-14 82.3 6.8 49 21-76 2-50 (460)
205 COG3573 Predicted oxidoreducta 99.0 4.7E-09 1E-13 74.6 8.4 36 21-62 4-39 (552)
206 PRK06912 acoL dihydrolipoamide 99.0 2.1E-08 4.5E-13 76.3 12.1 52 24-82 2-53 (458)
207 PRK12831 putative oxidoreducta 98.9 4.2E-09 9E-14 80.0 8.1 40 21-66 139-178 (464)
208 PLN02268 probable polyamine ox 98.9 1.5E-09 3.3E-14 81.9 5.4 39 24-68 2-40 (435)
209 PLN02576 protoporphyrinogen ox 98.9 1.5E-09 3.3E-14 83.3 5.4 42 21-68 11-53 (496)
210 TIGR02730 carot_isom carotene 98.9 1.6E-09 3.5E-14 83.0 5.4 40 23-68 1-40 (493)
211 KOG3855|consensus 98.9 1.5E-08 3.2E-13 73.6 9.8 154 22-180 36-215 (481)
212 PRK11883 protoporphyrinogen ox 98.9 1.5E-09 3.1E-14 82.3 5.0 39 24-68 2-42 (451)
213 PRK07233 hypothetical protein; 98.9 1.8E-09 3.9E-14 81.4 5.4 38 24-67 1-38 (434)
214 TIGR02733 desat_CrtD C-3',4' d 98.9 1.9E-09 4.2E-14 82.6 5.5 39 23-67 2-40 (492)
215 TIGR00562 proto_IX_ox protopor 98.9 1.6E-09 3.5E-14 82.4 5.1 40 23-68 3-46 (462)
216 KOG0405|consensus 98.9 6.1E-08 1.3E-12 69.2 11.6 138 18-181 16-165 (478)
217 KOG2665|consensus 98.9 1.5E-08 3.3E-13 71.4 8.4 139 21-163 47-228 (453)
218 PTZ00363 rab-GDP dissociation 98.9 3.4E-09 7.5E-14 79.6 5.1 44 19-68 1-44 (443)
219 TIGR02734 crtI_fam phytoene de 98.9 3.1E-09 6.8E-14 81.6 4.8 38 25-68 1-38 (502)
220 COG1231 Monoamine oxidase [Ami 98.8 7.2E-09 1.6E-13 76.3 5.6 43 20-68 5-47 (450)
221 TIGR00031 UDP-GALP_mutase UDP- 98.8 6.9E-09 1.5E-13 76.4 5.5 39 23-67 2-40 (377)
222 KOG2960|consensus 98.8 2.2E-08 4.7E-13 66.8 7.2 47 22-72 76-122 (328)
223 COG1148 HdrA Heterodisulfide r 98.8 6.6E-09 1.4E-13 76.9 4.7 41 21-67 123-163 (622)
224 COG3349 Uncharacterized conser 98.8 7.3E-09 1.6E-13 77.4 4.8 39 24-68 2-40 (485)
225 PRK12416 protoporphyrinogen ox 98.8 6.8E-09 1.5E-13 79.0 4.8 45 24-68 3-47 (463)
226 TIGR02731 phytoene_desat phyto 98.8 9.2E-09 2E-13 78.1 5.4 38 24-67 1-38 (453)
227 PLN02568 polyamine oxidase 98.8 1.1E-08 2.3E-13 78.9 5.6 41 21-67 4-49 (539)
228 PTZ00153 lipoamide dehydrogena 98.8 2.1E-08 4.6E-13 78.8 6.6 54 22-81 116-170 (659)
229 COG1232 HemY Protoporphyrinoge 98.7 1.4E-08 3.1E-13 75.8 4.8 38 24-67 2-41 (444)
230 PF06100 Strep_67kDa_ant: Stre 98.7 8.8E-07 1.9E-11 66.5 13.4 43 23-67 3-45 (500)
231 KOG4716|consensus 98.7 6.6E-08 1.4E-12 68.9 7.0 36 20-61 17-52 (503)
232 TIGR03315 Se_ygfK putative sel 98.7 2.5E-08 5.5E-13 81.2 5.4 40 22-67 537-576 (1012)
233 PF00732 GMC_oxred_N: GMC oxid 98.7 1.8E-08 3.9E-13 72.3 4.1 34 23-62 1-35 (296)
234 PLN02676 polyamine oxidase 98.7 3.5E-08 7.6E-13 75.4 5.5 42 20-67 24-66 (487)
235 TIGR02732 zeta_caro_desat caro 98.7 3.1E-08 6.7E-13 75.5 5.2 38 24-67 1-38 (474)
236 COG0562 Glf UDP-galactopyranos 98.7 4.6E-08 1E-12 69.0 5.4 40 23-68 2-41 (374)
237 PRK12779 putative bifunctional 98.7 3.3E-08 7.2E-13 80.7 5.3 41 22-68 306-346 (944)
238 PLN02852 ferredoxin-NADP+ redu 98.7 1.1E-07 2.3E-12 72.4 7.5 44 22-69 26-69 (491)
239 PRK09564 coenzyme A disulfide 98.7 2.2E-07 4.9E-12 70.5 9.2 36 24-63 2-37 (444)
240 COG3486 IucD Lysine/ornithine 98.7 2.2E-07 4.8E-12 67.6 8.6 143 19-182 2-158 (436)
241 KOG1238|consensus 98.6 4.9E-07 1.1E-11 69.5 10.5 40 19-63 54-93 (623)
242 PLN02529 lysine-specific histo 98.6 8E-08 1.7E-12 76.2 6.4 41 21-67 159-199 (738)
243 PF07992 Pyr_redox_2: Pyridine 98.6 6.3E-08 1.4E-12 65.5 5.1 33 24-62 1-33 (201)
244 COG2509 Uncharacterized FAD-de 98.6 3E-06 6.5E-11 62.8 13.9 50 131-181 173-229 (486)
245 COG2907 Predicted NAD/FAD-bind 98.6 4E-08 8.8E-13 70.1 4.1 41 21-68 7-47 (447)
246 PLN02328 lysine-specific histo 98.6 8.5E-08 1.8E-12 76.5 5.9 41 21-67 237-277 (808)
247 KOG2311|consensus 98.6 4.8E-07 1E-11 67.3 9.1 37 20-62 26-62 (679)
248 PRK12769 putative oxidoreducta 98.6 1.4E-07 3E-12 74.8 6.4 41 21-67 326-366 (654)
249 TIGR01316 gltA glutamate synth 98.6 1.4E-07 3E-12 71.6 6.1 41 21-67 132-172 (449)
250 PRK12775 putative trifunctiona 98.6 1.3E-07 2.9E-12 77.8 6.5 41 22-68 430-470 (1006)
251 PLN02612 phytoene desaturase 98.6 1.1E-07 2.4E-12 74.0 5.7 40 22-67 93-132 (567)
252 TIGR02462 pyranose_ox pyranose 98.6 1.3E-07 2.8E-12 72.7 5.9 38 23-66 1-38 (544)
253 PRK09853 putative selenate red 98.6 1E-07 2.2E-12 77.5 5.3 40 22-67 539-578 (1019)
254 COG2303 BetA Choline dehydroge 98.5 1E-07 2.3E-12 73.7 4.5 37 19-61 4-40 (542)
255 PRK13512 coenzyme A disulfide 98.5 9.1E-07 2E-11 67.0 9.2 36 24-63 3-38 (438)
256 PLN02487 zeta-carotene desatur 98.5 2.8E-07 6E-12 71.5 6.5 39 23-67 76-114 (569)
257 PRK12778 putative bifunctional 98.5 2.4E-07 5.1E-12 74.6 6.3 42 21-68 430-471 (752)
258 COG4529 Uncharacterized protei 98.5 5.6E-06 1.2E-10 61.9 12.9 40 23-65 2-41 (474)
259 PRK12810 gltD glutamate syntha 98.5 2.1E-07 4.4E-12 71.1 5.6 41 21-67 142-182 (471)
260 PRK02106 choline dehydrogenase 98.5 1.6E-07 3.5E-12 73.2 5.0 37 21-62 4-40 (560)
261 PRK07846 mycothione reductase; 98.5 3.7E-07 8.1E-12 69.3 6.6 49 22-79 1-49 (451)
262 PTZ00188 adrenodoxin reductase 98.5 4.1E-07 8.8E-12 68.8 6.6 44 22-70 39-82 (506)
263 PRK04965 NADH:flavorubredoxin 98.5 2.4E-06 5.1E-11 63.6 10.7 36 23-62 3-38 (377)
264 PRK05675 sdhA succinate dehydr 98.5 3.4E-06 7.3E-11 66.0 11.8 51 130-180 125-188 (570)
265 TIGR03452 mycothione_red mycot 98.5 4.2E-07 9.1E-12 69.1 6.6 49 22-79 2-50 (452)
266 PRK05329 anaerobic glycerol-3- 98.5 2.2E-07 4.8E-12 69.6 4.8 34 22-61 2-35 (422)
267 PRK11749 dihydropyrimidine deh 98.5 3E-07 6.4E-12 70.0 5.5 40 22-67 140-179 (457)
268 TIGR01318 gltD_gamma_fam gluta 98.5 4.7E-07 1E-11 69.1 6.3 41 21-67 140-180 (467)
269 KOG1276|consensus 98.5 3.5E-07 7.5E-12 67.0 5.2 44 22-69 11-54 (491)
270 COG3075 GlpB Anaerobic glycero 98.5 2.9E-07 6.3E-12 65.4 4.6 35 21-61 1-35 (421)
271 KOG0685|consensus 98.4 4.3E-07 9.3E-12 67.4 5.5 43 21-68 20-62 (498)
272 PRK12814 putative NADPH-depend 98.4 3.8E-07 8.3E-12 72.2 5.4 41 22-68 193-233 (652)
273 PRK12809 putative oxidoreducta 98.4 5.9E-07 1.3E-11 71.1 6.3 40 22-67 310-349 (639)
274 TIGR03862 flavo_PP4765 unchara 98.4 2.6E-06 5.7E-11 62.8 8.8 51 129-181 84-141 (376)
275 KOG3923|consensus 98.4 9.5E-07 2.1E-11 61.8 6.0 48 125-179 145-192 (342)
276 PTZ00318 NADH dehydrogenase-li 98.4 4.5E-06 9.8E-11 63.0 10.1 37 20-62 8-44 (424)
277 PRK04965 NADH:flavorubredoxin 98.4 9E-06 2E-10 60.5 11.5 91 23-180 142-237 (377)
278 PLN03000 amine oxidase 98.4 7.2E-07 1.6E-11 71.7 5.5 41 22-68 184-224 (881)
279 PRK06567 putative bifunctional 98.3 8.3E-07 1.8E-11 71.9 5.5 35 21-61 382-416 (1028)
280 PRK07251 pyridine nucleotide-d 98.3 1.4E-05 2.9E-10 60.8 11.8 34 23-62 158-191 (438)
281 PRK12770 putative glutamate sy 98.3 1.1E-06 2.4E-11 64.7 5.8 40 22-67 18-57 (352)
282 TIGR01317 GOGAT_sm_gam glutama 98.3 1.4E-06 3E-11 66.8 6.3 40 22-67 143-182 (485)
283 TIGR01350 lipoamide_DH dihydro 98.3 1.3E-05 2.8E-10 61.3 11.4 33 23-61 171-203 (461)
284 PRK12771 putative glutamate sy 98.3 1E-06 2.2E-11 68.9 5.3 40 22-67 137-176 (564)
285 PRK09754 phenylpropionate diox 98.3 1.7E-05 3.6E-10 59.5 11.6 34 23-62 145-178 (396)
286 TIGR01810 betA choline dehydro 98.3 6.7E-07 1.5E-11 69.4 4.2 33 24-62 1-34 (532)
287 PRK06912 acoL dihydrolipoamide 98.3 1.9E-05 4E-10 60.4 11.9 34 23-62 171-204 (458)
288 PRK05249 soluble pyridine nucl 98.3 1.5E-05 3.1E-10 61.0 11.1 90 23-180 176-270 (461)
289 PRK06115 dihydrolipoamide dehy 98.3 2.4E-05 5.2E-10 59.9 12.2 34 23-62 175-208 (466)
290 PLN02976 amine oxidase 98.3 1.5E-06 3.3E-11 72.8 5.5 40 22-67 693-732 (1713)
291 COG0493 GltD NADPH-dependent g 98.3 2E-06 4.4E-11 65.0 5.6 40 23-68 124-163 (457)
292 PRK06370 mercuric reductase; V 98.3 3E-05 6.6E-10 59.3 11.9 34 23-62 172-205 (463)
293 TIGR02053 MerA mercuric reduct 98.2 2.8E-05 6.1E-10 59.5 11.6 34 23-62 167-200 (463)
294 TIGR02374 nitri_red_nirB nitri 98.2 6.9E-06 1.5E-10 66.6 8.6 37 25-64 1-37 (785)
295 PRK06416 dihydrolipoamide dehy 98.2 3.1E-05 6.8E-10 59.2 11.8 34 23-62 173-206 (462)
296 PRK05976 dihydrolipoamide dehy 98.2 3.1E-05 6.7E-10 59.4 11.8 34 23-62 181-214 (472)
297 PLN02785 Protein HOTHEAD 98.2 2.4E-06 5.2E-11 66.8 5.6 36 20-62 53-88 (587)
298 TIGR03378 glycerol3P_GlpB glyc 98.2 2.2E-06 4.7E-11 63.9 4.7 33 23-61 1-33 (419)
299 PRK13984 putative oxidoreducta 98.2 3.4E-06 7.3E-11 66.5 5.9 41 21-67 282-322 (604)
300 TIGR03169 Nterm_to_SelD pyridi 98.2 1.2E-05 2.6E-10 59.6 8.5 36 24-62 1-36 (364)
301 PRK06116 glutathione reductase 98.2 5.5E-05 1.2E-09 57.7 12.2 34 23-62 168-201 (450)
302 PRK14989 nitrite reductase sub 98.2 1.5E-05 3.4E-10 64.9 9.5 40 23-64 4-43 (847)
303 KOG4254|consensus 98.2 1.7E-06 3.8E-11 63.9 3.7 42 20-67 12-53 (561)
304 COG1249 Lpd Pyruvate/2-oxoglut 98.2 5.4E-05 1.2E-09 57.4 11.7 73 23-163 174-246 (454)
305 TIGR01421 gluta_reduc_1 glutat 98.2 5.9E-05 1.3E-09 57.5 12.0 34 23-62 167-200 (450)
306 PRK07818 dihydrolipoamide dehy 98.2 5.7E-05 1.2E-09 57.9 12.0 33 23-61 173-205 (466)
307 COG3634 AhpF Alkyl hydroperoxi 98.2 5.5E-06 1.2E-10 59.6 5.9 85 21-159 210-294 (520)
308 TIGR03377 glycerol3P_GlpA glyc 98.2 3.5E-05 7.7E-10 59.7 10.8 54 126-180 123-188 (516)
309 TIGR02352 thiamin_ThiO glycine 98.1 4E-05 8.7E-10 56.0 10.3 57 123-180 129-191 (337)
310 PRK08010 pyridine nucleotide-d 98.1 8.6E-05 1.9E-09 56.5 11.9 33 23-61 159-191 (441)
311 PRK14989 nitrite reductase sub 98.1 6.7E-05 1.4E-09 61.3 11.9 33 23-61 146-178 (847)
312 COG0446 HcaD Uncharacterized N 98.1 7E-05 1.5E-09 56.2 10.7 72 23-161 137-208 (415)
313 PRK07845 flavoprotein disulfid 98.1 9.1E-05 2E-09 56.8 11.3 34 23-62 178-211 (466)
314 TIGR01424 gluta_reduc_2 glutat 98.1 0.00012 2.5E-09 55.9 11.7 34 23-62 167-200 (446)
315 PLN02507 glutathione reductase 98.1 0.00013 2.9E-09 56.3 11.9 33 23-61 204-236 (499)
316 PRK06327 dihydrolipoamide dehy 98.1 0.00014 3E-09 55.9 12.0 34 23-62 184-217 (475)
317 PRK09564 coenzyme A disulfide 98.1 0.00011 2.4E-09 55.9 11.4 89 23-180 150-244 (444)
318 TIGR03385 CoA_CoA_reduc CoA-di 98.0 0.00011 2.4E-09 55.7 11.1 34 23-62 138-171 (427)
319 PRK14694 putative mercuric red 98.0 0.00013 2.9E-09 55.9 11.6 32 23-60 179-210 (468)
320 KOG1800|consensus 98.0 7.6E-06 1.6E-10 59.4 4.5 42 23-68 21-62 (468)
321 PRK09754 phenylpropionate diox 98.0 8.6E-06 1.9E-10 61.0 5.0 37 22-62 3-39 (396)
322 COG1252 Ndh NADH dehydrogenase 98.0 0.0001 2.3E-09 54.8 10.4 75 23-159 156-237 (405)
323 PRK14727 putative mercuric red 98.0 0.00014 3E-09 55.9 11.5 32 23-60 189-220 (479)
324 COG1206 Gid NAD(FAD)-utilizing 98.0 4.3E-05 9.4E-10 54.7 8.0 109 23-158 4-127 (439)
325 TIGR03197 MnmC_Cterm tRNA U-34 98.0 5.4E-05 1.2E-09 56.4 8.8 57 123-180 127-188 (381)
326 KOG0399|consensus 98.0 1.2E-05 2.6E-10 65.9 5.4 42 21-68 1784-1825(2142)
327 PRK13748 putative mercuric red 98.0 0.00014 3E-09 57.1 11.3 32 23-60 271-302 (561)
328 KOG0404|consensus 98.0 0.00019 4.2E-09 48.8 10.3 90 22-159 8-97 (322)
329 PRK06467 dihydrolipoamide dehy 98.0 0.00016 3.5E-09 55.5 11.3 34 23-62 175-208 (471)
330 TIGR01423 trypano_reduc trypan 98.0 0.00022 4.7E-09 54.9 12.0 37 23-62 188-224 (486)
331 PLN02546 glutathione reductase 98.0 0.00021 4.6E-09 55.8 12.0 34 23-62 253-286 (558)
332 PRK06292 dihydrolipoamide dehy 98.0 0.00022 4.7E-09 54.6 11.8 34 23-62 170-203 (460)
333 PTZ00058 glutathione reductase 98.0 0.00025 5.4E-09 55.5 12.1 34 23-62 238-271 (561)
334 TIGR02374 nitri_red_nirB nitri 97.9 0.00019 4E-09 58.5 11.3 33 23-61 141-173 (785)
335 TIGR01438 TGR thioredoxin and 97.9 0.00029 6.3E-09 54.3 11.1 32 23-60 181-212 (484)
336 PRK07846 mycothione reductase; 97.9 0.00042 9E-09 53.0 11.4 34 23-62 167-200 (451)
337 PTZ00052 thioredoxin reductase 97.9 0.00044 9.5E-09 53.5 11.6 32 23-60 183-214 (499)
338 PF00996 GDI: GDP dissociation 97.8 3.8E-05 8.3E-10 57.8 5.4 43 19-67 1-43 (438)
339 PRK13512 coenzyme A disulfide 97.8 0.0004 8.7E-09 52.9 10.6 34 23-62 149-182 (438)
340 PTZ00153 lipoamide dehydrogena 97.8 0.00065 1.4E-08 54.1 11.7 34 23-62 313-346 (659)
341 TIGR01816 sdhA_forward succina 97.8 0.00037 8.1E-09 54.7 10.2 50 130-180 118-180 (565)
342 TIGR01316 gltA glutamate synth 97.7 0.00048 1E-08 52.6 10.1 33 23-61 273-305 (449)
343 TIGR03452 mycothione_red mycot 97.7 0.0012 2.6E-08 50.5 11.5 34 23-62 170-203 (452)
344 PTZ00318 NADH dehydrogenase-li 97.6 0.0011 2.5E-08 50.2 10.6 39 24-62 175-221 (424)
345 COG4716 Myosin-crossreactive a 97.6 0.00041 8.9E-09 50.8 7.3 43 23-67 23-65 (587)
346 PF02737 3HCDH_N: 3-hydroxyacy 97.6 0.00014 3.1E-09 48.4 4.5 33 24-62 1-33 (180)
347 PF01210 NAD_Gly3P_dh_N: NAD-d 97.6 0.00017 3.8E-09 46.9 4.7 32 24-61 1-32 (157)
348 PF13434 K_oxygenase: L-lysine 97.6 0.0048 1E-07 45.4 12.7 38 21-62 189-226 (341)
349 PF01593 Amino_oxidase: Flavin 97.5 0.00017 3.6E-09 54.2 4.5 31 32-68 1-31 (450)
350 KOG1335|consensus 97.5 0.0011 2.5E-08 48.7 8.1 75 23-165 212-286 (506)
351 PRK01438 murD UDP-N-acetylmura 97.4 0.00038 8.1E-09 53.6 6.0 32 24-61 18-49 (480)
352 TIGR01292 TRX_reduct thioredox 97.4 0.0029 6.3E-08 45.4 10.2 33 23-61 142-174 (300)
353 COG1252 Ndh NADH dehydrogenase 97.4 0.00029 6.4E-09 52.5 4.8 37 22-62 3-39 (405)
354 KOG1336|consensus 97.4 0.0042 9.2E-08 46.8 10.3 92 22-180 213-311 (478)
355 PF02558 ApbA: Ketopantoate re 97.3 0.0006 1.3E-08 44.0 5.0 31 25-61 1-31 (151)
356 PRK07066 3-hydroxybutyryl-CoA 97.3 0.00056 1.2E-08 49.7 5.1 33 24-62 9-41 (321)
357 PRK12778 putative bifunctional 97.3 0.0061 1.3E-07 49.7 11.3 33 23-61 571-604 (752)
358 PRK07530 3-hydroxybutyryl-CoA 97.2 0.00066 1.4E-08 48.9 4.7 34 23-62 5-38 (292)
359 PRK06129 3-hydroxyacyl-CoA deh 97.2 0.00057 1.2E-08 49.6 4.4 33 24-62 4-36 (308)
360 KOG2755|consensus 97.2 0.00034 7.4E-09 48.7 2.9 34 25-62 2-35 (334)
361 TIGR03169 Nterm_to_SelD pyridi 97.2 0.011 2.3E-07 43.9 10.9 35 23-57 146-180 (364)
362 COG0569 TrkA K+ transport syst 97.2 0.00071 1.5E-08 46.8 4.3 33 24-62 2-34 (225)
363 PRK02705 murD UDP-N-acetylmura 97.1 0.00082 1.8E-08 51.5 4.8 33 24-62 2-34 (459)
364 PRK07819 3-hydroxybutyryl-CoA 97.1 0.00098 2.1E-08 47.8 4.6 33 24-62 7-39 (286)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 97.1 0.00079 1.7E-08 45.1 3.7 33 24-62 2-34 (185)
366 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0012 2.5E-08 47.5 4.6 32 24-61 5-36 (287)
367 PRK09260 3-hydroxybutyryl-CoA 97.0 0.0012 2.6E-08 47.4 4.2 33 24-62 3-35 (288)
368 PRK12810 gltD glutamate syntha 97.0 0.017 3.7E-07 44.5 10.7 33 23-61 282-315 (471)
369 PRK05708 2-dehydropantoate 2-r 96.9 0.002 4.3E-08 46.7 4.7 32 24-61 4-35 (305)
370 COG1748 LYS9 Saccharopine dehy 96.9 0.0064 1.4E-07 45.3 7.3 33 24-62 3-36 (389)
371 PRK06035 3-hydroxyacyl-CoA deh 96.9 0.0017 3.8E-08 46.7 4.4 33 24-62 5-37 (291)
372 PRK06249 2-dehydropantoate 2-r 96.8 0.0026 5.7E-08 46.3 5.1 32 24-61 7-38 (313)
373 TIGR02354 thiF_fam2 thiamine b 96.8 0.003 6.4E-08 42.9 4.9 34 22-61 21-55 (200)
374 TIGR03140 AhpF alkyl hydropero 96.8 0.0024 5.2E-08 49.7 4.8 35 23-63 353-387 (515)
375 TIGR01470 cysG_Nterm siroheme 96.8 0.0035 7.6E-08 42.7 4.9 32 23-60 10-41 (205)
376 PRK06130 3-hydroxybutyryl-CoA 96.7 0.0031 6.7E-08 45.8 4.8 32 24-61 6-37 (311)
377 PLN02545 3-hydroxybutyryl-CoA 96.7 0.003 6.5E-08 45.6 4.7 33 24-62 6-38 (295)
378 PRK06522 2-dehydropantoate 2-r 96.7 0.0029 6.3E-08 45.7 4.6 32 24-61 2-33 (304)
379 PRK05808 3-hydroxybutyryl-CoA 96.7 0.0024 5.3E-08 45.7 4.2 33 24-62 5-37 (282)
380 PRK06719 precorrin-2 dehydroge 96.7 0.0039 8.5E-08 40.6 4.7 31 22-58 13-43 (157)
381 PRK12769 putative oxidoreducta 96.7 0.045 9.7E-07 44.1 11.4 33 23-61 469-502 (654)
382 TIGR03143 AhpF_homolog putativ 96.7 0.003 6.5E-08 49.7 4.6 34 23-62 144-177 (555)
383 PRK12921 2-dehydropantoate 2-r 96.7 0.0032 6.9E-08 45.5 4.4 30 24-59 2-31 (305)
384 PF13241 NAD_binding_7: Putati 96.7 0.0023 5E-08 38.5 3.1 34 22-61 7-40 (103)
385 COG1004 Ugd Predicted UDP-gluc 96.6 0.0033 7.1E-08 46.5 4.3 32 24-61 2-33 (414)
386 PRK06718 precorrin-2 dehydroge 96.6 0.0046 1E-07 42.0 4.7 32 23-60 11-42 (202)
387 PRK10262 thioredoxin reductase 96.6 0.004 8.6E-08 45.4 4.7 35 23-63 147-181 (321)
388 PF00899 ThiF: ThiF family; I 96.6 0.0042 9.2E-08 39.3 4.2 35 22-62 2-37 (135)
389 KOG1439|consensus 96.6 0.0012 2.7E-08 48.6 2.0 42 19-66 1-42 (440)
390 PF02254 TrkA_N: TrkA-N domain 96.6 0.0053 1.2E-07 37.6 4.6 32 25-62 1-32 (116)
391 PRK14106 murD UDP-N-acetylmura 96.6 0.0042 9.1E-08 47.5 4.9 33 23-61 6-38 (450)
392 PF01262 AlaDh_PNT_C: Alanine 96.6 0.0062 1.3E-07 40.1 5.1 34 22-61 20-53 (168)
393 PRK15317 alkyl hydroperoxide r 96.6 0.0044 9.5E-08 48.3 4.9 35 23-63 352-386 (517)
394 TIGR00518 alaDH alanine dehydr 96.6 0.0045 9.7E-08 46.1 4.6 34 22-61 167-200 (370)
395 COG5044 MRS6 RAB proteins gera 96.5 0.0068 1.5E-07 44.4 5.3 39 21-65 5-43 (434)
396 KOG4405|consensus 96.5 0.0037 7.9E-08 46.4 4.0 44 19-68 5-48 (547)
397 PF01488 Shikimate_DH: Shikima 96.5 0.0078 1.7E-07 38.1 5.0 34 22-61 12-46 (135)
398 PRK11064 wecC UDP-N-acetyl-D-m 96.5 0.0047 1E-07 46.8 4.6 33 24-62 5-37 (415)
399 PTZ00082 L-lactate dehydrogena 96.5 0.0078 1.7E-07 44.0 5.5 34 23-62 7-41 (321)
400 PRK08229 2-dehydropantoate 2-r 96.5 0.0048 1E-07 45.4 4.5 32 24-61 4-35 (341)
401 TIGR01372 soxA sarcosine oxida 96.5 0.031 6.6E-07 47.2 9.5 33 23-61 318-351 (985)
402 cd05292 LDH_2 A subgroup of L- 96.5 0.0059 1.3E-07 44.4 4.8 33 24-62 2-36 (308)
403 PRK14620 NAD(P)H-dependent gly 96.5 0.0057 1.2E-07 44.8 4.8 32 24-61 2-33 (326)
404 PRK08268 3-hydroxy-acyl-CoA de 96.5 0.0058 1.3E-07 47.5 4.9 34 23-62 8-41 (507)
405 PRK12475 thiamine/molybdopteri 96.5 0.0065 1.4E-07 44.7 4.9 34 22-61 24-58 (338)
406 PRK12831 putative oxidoreducta 96.5 0.0055 1.2E-07 47.1 4.7 33 23-61 282-314 (464)
407 PRK15116 sulfur acceptor prote 96.4 0.0079 1.7E-07 42.7 5.0 37 21-63 29-66 (268)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.4 0.0051 1.1E-07 47.7 4.4 33 24-62 7-39 (503)
409 PRK12770 putative glutamate sy 96.4 0.0058 1.2E-07 45.2 4.5 34 23-62 173-207 (352)
410 TIGR01763 MalateDH_bact malate 96.4 0.0075 1.6E-07 43.8 5.0 32 24-61 3-35 (305)
411 PRK04148 hypothetical protein; 96.4 0.0044 9.4E-08 39.0 3.2 33 23-62 18-50 (134)
412 cd00401 AdoHcyase S-adenosyl-L 96.4 0.007 1.5E-07 45.6 4.8 34 23-62 203-236 (413)
413 PRK07688 thiamine/molybdopteri 96.4 0.0079 1.7E-07 44.3 5.0 35 21-61 23-58 (339)
414 PRK09424 pntA NAD(P) transhydr 96.4 0.0059 1.3E-07 47.2 4.5 34 22-61 165-198 (509)
415 PRK14618 NAD(P)H-dependent gly 96.4 0.0071 1.5E-07 44.3 4.7 32 24-61 6-37 (328)
416 TIGR02356 adenyl_thiF thiazole 96.4 0.0091 2E-07 40.6 4.9 36 21-62 20-56 (202)
417 PRK11730 fadB multifunctional 96.3 0.0069 1.5E-07 49.1 4.6 34 23-62 314-347 (715)
418 PRK00094 gpsA NAD(P)H-dependen 96.3 0.0079 1.7E-07 43.9 4.5 32 24-61 3-34 (325)
419 cd01487 E1_ThiF_like E1_ThiF_l 96.2 0.011 2.4E-07 39.2 4.7 32 24-61 1-33 (174)
420 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.011 2.4E-07 38.9 4.6 34 22-61 44-78 (168)
421 TIGR03026 NDP-sugDHase nucleot 96.2 0.0071 1.5E-07 45.8 4.2 33 24-62 2-34 (411)
422 TIGR02437 FadB fatty oxidation 96.2 0.008 1.7E-07 48.7 4.6 34 23-62 314-347 (714)
423 COG0686 Ald Alanine dehydrogen 96.2 0.0055 1.2E-07 43.9 3.2 35 21-61 167-201 (371)
424 PF00056 Ldh_1_N: lactate/mala 96.2 0.017 3.6E-07 36.9 5.1 35 24-62 2-37 (141)
425 TIGR02355 moeB molybdopterin s 96.2 0.013 2.8E-07 41.0 5.0 36 22-63 24-60 (240)
426 PRK07531 bifunctional 3-hydrox 96.2 0.01 2.2E-07 46.1 4.8 33 24-62 6-38 (495)
427 cd01483 E1_enzyme_family Super 96.2 0.015 3.3E-07 37.2 4.9 33 24-62 1-34 (143)
428 TIGR02441 fa_ox_alpha_mit fatt 96.1 0.0077 1.7E-07 48.9 4.1 34 23-62 336-369 (737)
429 PF13478 XdhC_C: XdhC Rossmann 96.1 0.013 2.8E-07 37.2 4.3 32 25-62 1-32 (136)
430 cd01339 LDH-like_MDH L-lactate 96.1 0.011 2.4E-07 42.8 4.5 32 25-62 1-33 (300)
431 PRK05690 molybdopterin biosynt 96.1 0.015 3.2E-07 40.9 4.9 35 22-62 32-67 (245)
432 PRK11749 dihydropyrimidine deh 96.1 0.012 2.6E-07 45.2 4.8 33 23-61 274-307 (457)
433 PRK07417 arogenate dehydrogena 96.1 0.0099 2.1E-07 42.6 4.1 32 24-61 2-33 (279)
434 PRK08644 thiamine biosynthesis 96.1 0.015 3.2E-07 39.9 4.7 34 22-61 28-62 (212)
435 PRK12549 shikimate 5-dehydroge 96.1 0.013 2.9E-07 42.0 4.7 33 23-61 128-161 (284)
436 PRK06223 malate dehydrogenase; 96.1 0.015 3.2E-07 42.3 5.0 33 24-62 4-37 (307)
437 PRK14619 NAD(P)H-dependent gly 96.1 0.014 3E-07 42.5 4.8 32 24-61 6-37 (308)
438 PRK11154 fadJ multifunctional 96.0 0.0094 2E-07 48.3 4.2 33 23-61 310-343 (708)
439 PRK08328 hypothetical protein; 96.0 0.017 3.7E-07 40.2 4.9 35 22-62 27-62 (231)
440 KOG3851|consensus 96.0 0.0094 2E-07 43.0 3.6 38 20-61 37-74 (446)
441 PF03446 NAD_binding_2: NAD bi 96.0 0.017 3.7E-07 37.8 4.5 33 24-62 3-35 (163)
442 COG1250 FadB 3-hydroxyacyl-CoA 95.9 0.012 2.7E-07 42.4 4.0 32 24-61 5-36 (307)
443 cd05291 HicDH_like L-2-hydroxy 95.9 0.019 4.1E-07 41.7 4.9 33 24-62 2-36 (306)
444 TIGR00936 ahcY adenosylhomocys 95.9 0.017 3.8E-07 43.4 4.8 35 22-62 195-229 (406)
445 cd05311 NAD_bind_2_malic_enz N 95.9 0.017 3.8E-07 40.0 4.5 33 23-61 26-61 (226)
446 cd00757 ThiF_MoeB_HesA_family 95.9 0.021 4.5E-07 39.6 4.9 35 22-62 21-56 (228)
447 TIGR02440 FadJ fatty oxidation 95.9 0.014 3E-07 47.3 4.4 34 23-62 305-339 (699)
448 PRK12809 putative oxidoreducta 95.8 0.26 5.6E-06 39.8 11.4 33 23-61 452-485 (639)
449 PF00670 AdoHcyase_NAD: S-aden 95.8 0.02 4.4E-07 37.3 4.2 34 23-62 24-57 (162)
450 COG1893 ApbA Ketopantoate redu 95.8 0.016 3.6E-07 42.0 4.2 32 24-61 2-33 (307)
451 PLN02353 probable UDP-glucose 95.8 0.018 3.8E-07 44.4 4.5 35 24-62 3-37 (473)
452 PRK08306 dipicolinate synthase 95.7 0.021 4.6E-07 41.2 4.6 34 22-61 152-185 (296)
453 cd01485 E1-1_like Ubiquitin ac 95.7 0.027 5.9E-07 38.2 4.9 35 22-62 19-54 (198)
454 TIGR01915 npdG NADPH-dependent 95.7 0.024 5.2E-07 39.1 4.7 32 24-61 2-34 (219)
455 TIGR01505 tartro_sem_red 2-hyd 95.7 0.018 4E-07 41.4 4.1 33 24-62 1-33 (291)
456 TIGR00561 pntA NAD(P) transhyd 95.7 0.02 4.4E-07 44.3 4.5 34 22-61 164-197 (511)
457 KOG1346|consensus 95.6 0.021 4.6E-07 42.8 4.3 132 20-182 176-312 (659)
458 cd00755 YgdL_like Family of ac 95.6 0.03 6.6E-07 38.9 4.9 35 22-62 11-46 (231)
459 cd05293 LDH_1 A subgroup of L- 95.6 0.032 7E-07 40.6 5.2 33 23-61 4-38 (312)
460 PRK02472 murD UDP-N-acetylmura 95.6 0.023 5E-07 43.5 4.6 32 24-61 7-38 (447)
461 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.033 7.1E-07 37.8 4.8 34 22-61 21-55 (197)
462 PRK08223 hypothetical protein; 95.6 0.031 6.7E-07 40.0 4.8 36 21-62 26-62 (287)
463 PTZ00142 6-phosphogluconate de 95.6 0.019 4E-07 44.2 3.9 34 23-62 2-35 (470)
464 PRK05476 S-adenosyl-L-homocyst 95.6 0.028 6.1E-07 42.6 4.8 34 23-62 213-246 (425)
465 cd01075 NAD_bind_Leu_Phe_Val_D 95.5 0.034 7.4E-07 37.8 4.8 33 23-61 29-61 (200)
466 PRK07502 cyclohexadienyl dehyd 95.5 0.027 5.8E-07 40.9 4.5 33 23-61 7-41 (307)
467 PRK03369 murD UDP-N-acetylmura 95.5 0.025 5.4E-07 43.9 4.6 32 23-60 13-44 (488)
468 PRK00066 ldh L-lactate dehydro 95.5 0.034 7.3E-07 40.6 5.0 33 23-61 7-41 (315)
469 TIGR02853 spore_dpaA dipicolin 95.5 0.028 6E-07 40.5 4.4 34 23-62 152-185 (287)
470 KOG2495|consensus 95.5 0.0093 2E-07 44.6 2.0 40 23-62 219-266 (491)
471 COG1063 Tdh Threonine dehydrog 95.5 0.028 6E-07 41.7 4.5 32 24-61 171-203 (350)
472 TIGR03376 glycerol3P_DH glycer 95.5 0.031 6.8E-07 41.2 4.7 31 24-60 1-39 (342)
473 cd01484 E1-2_like Ubiquitin ac 95.5 0.038 8.1E-07 38.5 4.8 33 24-62 1-34 (234)
474 cd05191 NAD_bind_amino_acid_DH 95.5 0.048 1E-06 31.5 4.6 32 22-59 23-55 (86)
475 PRK01710 murD UDP-N-acetylmura 95.4 0.029 6.4E-07 43.1 4.7 33 23-61 15-47 (458)
476 TIGR03736 PRTRC_ThiF PRTRC sys 95.4 0.037 8.1E-07 38.7 4.8 42 21-62 10-56 (244)
477 PTZ00117 malate dehydrogenase; 95.4 0.041 8.8E-07 40.3 5.2 35 22-62 5-40 (319)
478 COG3634 AhpF Alkyl hydroperoxi 95.4 0.017 3.6E-07 42.3 2.9 35 23-63 355-389 (520)
479 PRK05600 thiamine biosynthesis 95.4 0.04 8.7E-07 41.1 5.0 34 22-61 41-75 (370)
480 PRK15057 UDP-glucose 6-dehydro 95.3 0.03 6.5E-07 42.1 4.3 32 24-62 2-33 (388)
481 PRK12548 shikimate 5-dehydroge 95.3 0.037 8.1E-07 39.9 4.7 33 23-61 127-160 (289)
482 KOG0024|consensus 95.3 0.044 9.6E-07 39.7 4.9 46 10-61 158-204 (354)
483 PRK15461 NADH-dependent gamma- 95.3 0.032 7E-07 40.3 4.4 33 24-62 3-35 (296)
484 PLN02172 flavin-containing mon 95.3 0.025 5.3E-07 43.6 3.9 33 23-61 205-237 (461)
485 cd05290 LDH_3 A subgroup of L- 95.3 0.045 9.8E-07 39.8 5.0 32 24-61 1-34 (307)
486 PRK04308 murD UDP-N-acetylmura 95.3 0.038 8.3E-07 42.3 5.0 33 24-62 7-39 (445)
487 PRK05597 molybdopterin biosynt 95.3 0.04 8.7E-07 40.9 4.9 35 21-61 27-62 (355)
488 PLN02494 adenosylhomocysteinas 95.3 0.04 8.8E-07 42.2 4.9 35 22-62 254-288 (477)
489 PRK09496 trkA potassium transp 95.3 0.029 6.3E-07 43.0 4.3 33 24-62 2-34 (453)
490 PF03807 F420_oxidored: NADP o 95.3 0.056 1.2E-06 31.8 4.6 33 24-62 1-37 (96)
491 cd01486 Apg7 Apg7 is an E1-lik 95.3 0.044 9.5E-07 39.5 4.7 32 24-61 1-33 (307)
492 PRK05562 precorrin-2 dehydroge 95.3 0.044 9.5E-07 37.8 4.6 32 23-60 26-57 (223)
493 COG1251 NirB NAD(P)H-nitrite r 95.2 0.12 2.5E-06 41.7 7.2 32 24-61 147-178 (793)
494 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.054 1.2E-06 36.5 4.9 33 23-61 29-62 (194)
495 PRK12439 NAD(P)H-dependent gly 95.2 0.042 9.2E-07 40.6 4.7 32 23-61 8-39 (341)
496 PRK00683 murD UDP-N-acetylmura 95.2 0.039 8.4E-07 41.9 4.6 33 23-61 4-36 (418)
497 TIGR02964 xanthine_xdhC xanthi 95.1 0.053 1.2E-06 38.1 4.8 36 21-62 99-134 (246)
498 cd01488 Uba3_RUB Ubiquitin act 95.1 0.051 1.1E-06 39.1 4.8 32 24-61 1-33 (291)
499 PRK10669 putative cation:proto 95.1 0.034 7.4E-07 43.9 4.2 35 22-62 417-451 (558)
500 TIGR00507 aroE shikimate 5-deh 95.1 0.049 1.1E-06 38.8 4.7 33 23-61 118-150 (270)
No 1
>KOG2415|consensus
Probab=99.95 E-value=1.2e-27 Score=170.29 Aligned_cols=161 Identities=71% Similarity=1.175 Sum_probs=150.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
..++||+||||||+||++|+.|.|.++++...++|+|+||....||.+.++..+++..+.+++++|++.+.+++++++.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d 153 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccc
Confidence 34689999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCC
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG 179 (182)
.+.++.....++++.. .+...++.|.++-.++.++|-+.+++.|++|+-+..+.++..++++.+.||.++|+=|.-||
T Consensus 154 ~~~fLt~~~~i~vPv~--~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 154 KFKFLTGKGRISVPVP--SPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred ceeeeccCceeecCCC--cccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 9988888777777665 56777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy2240 180 SPK 182 (182)
Q Consensus 180 ~~~ 182 (182)
+||
T Consensus 232 ~pK 234 (621)
T KOG2415|consen 232 APK 234 (621)
T ss_pred Ccc
Confidence 987
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.86 E-value=3.6e-21 Score=142.62 Aligned_cols=143 Identities=36% Similarity=0.569 Sum_probs=106.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
+++||+||||||+|+++|+.|++ .|++|+||||...++....+++.+.+..+.+....+... +...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~------~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK------AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH------cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence 46899999999999999999999 899999999999998777776777777777776665532 222222211
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVG 174 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~v 174 (182)
+........... .....+.++|..+.++|.+.+++.|++++.+++++++..++++.+++ ....++|
T Consensus 73 ~~~~~~~~~~~~--------~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~v 144 (396)
T COG0644 73 IYFPGEKVAIEV--------PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVV 144 (396)
T ss_pred EEecCCceEEec--------CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEE
Confidence 111100000111 11338899999999999999999999999999999999877776665 3457999
Q ss_pred EecCCC
Q psy2240 175 IAKDGS 180 (182)
Q Consensus 175 i~adG~ 180 (182)
|+|||.
T Consensus 145 I~AdG~ 150 (396)
T COG0644 145 IDADGV 150 (396)
T ss_pred EECCCc
Confidence 999996
No 3
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.83 E-value=1.1e-19 Score=135.75 Aligned_cols=152 Identities=27% Similarity=0.490 Sum_probs=96.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..+||+||||||+|+++|+.|++ .|++|+||||.+.++....+++.+....+.+.++.+... ..+........
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~------~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~ 76 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEK 76 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh------CCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-Ccccceeeeee
Confidence 35899999999999999999999 899999999998877654555555444444443332211 11111111111
Q ss_pred HHHHHhhccCCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCE
Q psy2240 101 FAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDV 173 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~ 173 (182)
+.++.......+.+... ........+.+.|..|.++|.+.+++.|++++++++|+++..++ +.++++ ..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g~~i~A~~ 155 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADGDVIEAKT 155 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCCcEEECCE
Confidence 11111111111111100 01112236788999999999999999999999999999997643 444433 35689
Q ss_pred EEecCCC
Q psy2240 174 GIAKDGS 180 (182)
Q Consensus 174 vi~adG~ 180 (182)
||.|+|.
T Consensus 156 VI~A~G~ 162 (428)
T PRK10157 156 VILADGV 162 (428)
T ss_pred EEEEeCC
Confidence 9999996
No 4
>PRK10015 oxidoreductase; Provisional
Probab=99.82 E-value=1.6e-19 Score=134.89 Aligned_cols=152 Identities=27% Similarity=0.507 Sum_probs=94.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.++||+||||||+|+++|+.|++ .|++|+||||.+.++....+++.+....+...++.+.. ...+........
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~------~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~ 76 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR------AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREK 76 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCcccccccee
Confidence 35899999999999999999999 89999999999877654444544433333333222110 011111111111
Q ss_pred HHHHHhhccCCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCE
Q psy2240 101 FAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDV 173 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~ 173 (182)
+.++........++... ........+.+.|..|.++|.+.+++.|++++.+++|+++..++ +.+.++ ..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~~~i~A~~ 155 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGDDILEANV 155 (429)
T ss_pred EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCCeEEECCE
Confidence 11111111111111100 00111236788999999999999999999999999999987643 444433 45689
Q ss_pred EEecCCC
Q psy2240 174 GIAKDGS 180 (182)
Q Consensus 174 vi~adG~ 180 (182)
||.|+|.
T Consensus 156 VI~AdG~ 162 (429)
T PRK10015 156 VILADGV 162 (429)
T ss_pred EEEccCc
Confidence 9999996
No 5
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.78 E-value=5.1e-18 Score=121.41 Aligned_cols=151 Identities=27% Similarity=0.302 Sum_probs=95.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-c--ccccC--hhHHhhhhhhHHhcCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-S--GAVID--PIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (182)
+.+||+|||||++|+++|..+++ +|.+|+|||+.+.+|.... + ++++- .....+++......+.++...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~------~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK------AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh------cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 45799999999999999999999 8999999999998886542 2 22221 111333333322222222222
Q ss_pred ---ch-hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-----
Q psy2240 96 ---VH-EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----- 166 (182)
Q Consensus 96 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----- 166 (182)
++ .+.+.|+...+ ..+........+ ...-....+.+.|..++++.||+|+.+++|.++..++++..+
T Consensus 76 l~~ft~~d~i~~~e~~G-i~~~e~~~Gr~F---p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g 151 (408)
T COG2081 76 LARFTPEDFIDWVEGLG-IALKEEDLGRMF---PDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG 151 (408)
T ss_pred HHhCCHHHHHHHHHhcC-CeeEEccCceec---CCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC
Confidence 22 23444544432 222221111111 111234679999999999999999999999999886533332
Q ss_pred -EEEeCCEEEecCCCC
Q psy2240 167 -GIATGDVGIAKDGSP 181 (182)
Q Consensus 167 -~v~~~~~vi~adG~~ 181 (182)
.+.++.+||+++|.+
T Consensus 152 ~~i~~d~lilAtGG~S 167 (408)
T COG2081 152 ETVKCDSLILATGGKS 167 (408)
T ss_pred CEEEccEEEEecCCcC
Confidence 266778899999874
No 6
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.78 E-value=1.7e-17 Score=115.91 Aligned_cols=130 Identities=28% Similarity=0.418 Sum_probs=88.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.++||+|||||++|+++|+.|++ +|++|+|||+.+.+++..+.++.+.... .+....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~------~G~~V~liEk~~~~Ggg~~~gg~~~~~~-----------------~v~~~~ 80 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK------AGLKVAVFERKLSFGGGMWGGGMLFNKI-----------------VVQEEA 80 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh------CCCeEEEEecCCCCCCccccCccccccc-----------------cchHHH
Confidence 46899999999999999999999 8999999999988776544333211110 001112
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------------
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------------ 168 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------------ 168 (182)
..++.. +.+++. ....+.+.+++..+...|.+.+++.|++++++++|+++..++++.+.++
T Consensus 81 ~~~l~~---~gv~~~----~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 81 DEILDE---FGIRYK----EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred HHHHHH---CCCCce----eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 222221 112211 1112245678889999999999999999999999999987555444432
Q ss_pred ------EeCCEEEecCCC
Q psy2240 169 ------ATGDVGIAKDGS 180 (182)
Q Consensus 169 ------~~~~~vi~adG~ 180 (182)
+.+++||.|+|+
T Consensus 154 ~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 154 HVDPLTIEAKAVVDATGH 171 (257)
T ss_pred CCCcEEEEcCEEEEEeCC
Confidence 345788888886
No 7
>PRK08013 oxidoreductase; Provisional
Probab=99.76 E-value=5.9e-18 Score=125.85 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=90.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-----cccccCh--hHHhhhhhhHHhcCCCCCc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-----SGAVIDP--IALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~ 94 (182)
.+||+||||||+|+++|+.|++ .|++|+|||+.+.+..... ....+.+ ..+.+.++.|.........
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~------~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~ 76 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG------SGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRAS 76 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh------CCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCc
Confidence 5799999999999999999999 8999999999976432110 1111222 2334444544432211011
Q ss_pred cchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE----
Q psy2240 95 PVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG---- 167 (182)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~---- 167 (182)
.... +..+... ....+... .. .....++.+++..|.+.|.+.+.+. +++++++++|++++.++++..+.
T Consensus 77 ~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g 152 (400)
T PRK08013 77 CYHG--MEVWDKDSFGRIAFDDQ-SM-GYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDG 152 (400)
T ss_pred cccE--EEEEeCCCCceEEEccc-cc-CCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCC
Confidence 1100 0000000 00001000 00 0111256889999999999999874 79999999999998766554332
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 153 ~~i~a~lvVgADG~ 166 (400)
T PRK08013 153 SMLTARLVVGADGA 166 (400)
T ss_pred CEEEeeEEEEeCCC
Confidence 2456999999996
No 8
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.75 E-value=9e-18 Score=125.49 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=87.7
Q ss_pred cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh--HHhhhhhhHHhcCCCCCc
Q psy2240 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI--ALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (182)
.+..++||+||||||+|+++|+.|++ .|++|+||||.+....... .+-.+.+. .+.+.++.|...... ..
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~-~~ 86 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKD------SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQ-IG 86 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhc------CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhh-cC
Confidence 34456899999999999999999999 8999999999986532111 11123332 233334444432111 00
Q ss_pred cchhhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEE---
Q psy2240 95 PVHEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGI--- 168 (182)
Q Consensus 95 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v--- 168 (182)
...... ...... ...+.. .... ....++...+..+.+.|.+.+.+. ++++++++++++++.++++..+.+
T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~ 162 (415)
T PRK07364 87 KFRQIR--LSDADYPGVVKFQP-TDLG-TEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIE 162 (415)
T ss_pred CccEEE--EEeCCCCceeeecc-ccCC-CCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccC
Confidence 100000 000000 000110 0000 011134444457888898888764 799999999999987555543322
Q ss_pred -----EeCCEEEecCCC
Q psy2240 169 -----ATGDVGIAKDGS 180 (182)
Q Consensus 169 -----~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 163 ~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 163 GKQQTLQSKLVVAADGA 179 (415)
T ss_pred CcceEEeeeEEEEeCCC
Confidence 346999999996
No 9
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.75 E-value=1.4e-17 Score=110.29 Aligned_cols=131 Identities=28% Similarity=0.383 Sum_probs=83.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.++||+|||+||+|+++|+.|++ .|++|++||+...+||..+.++.+..... +....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~------~g~kV~v~E~~~~~GGg~~~Gg~lf~~iV-----------------Vq~~a 72 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK------AGLKVAVIERKLSPGGGMWGGGMLFNKIV-----------------VQEEA 72 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH------HTS-EEEEESSSS-BTTTTS-CTT---EE-----------------EETTT
T ss_pred ccCCEEEECCChhHHHHHHHHHH------CCCeEEEEecCCCCCccccccccccchhh-----------------hhhhH
Confidence 46899999999999999999999 89999999999988876665544322111 11111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT---------- 170 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~---------- 170 (182)
...+.. -...+.. +..+.+..+..++...|...+.+.|++|+..+.|+++..-++.++.|+..
T Consensus 73 ~~iL~e-lgi~y~~------~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl 145 (230)
T PF01946_consen 73 DEILDE-LGIPYEE------YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL 145 (230)
T ss_dssp HHHHHH-HT---EE-------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred HHHHHh-CCceeEE------eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence 111111 1111111 22235678899999999999988999999999999987644467777543
Q ss_pred --------CCEEEecCCCC
Q psy2240 171 --------GDVGIAKDGSP 181 (182)
Q Consensus 171 --------~~~vi~adG~~ 181 (182)
+++||.|.|+.
T Consensus 146 HvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 146 HVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp T-B-EEEEESEEEE---SS
T ss_pred CCCcceEEEeEEEeCCCCc
Confidence 48999999984
No 10
>PRK06184 hypothetical protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=126.57 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=90.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP 95 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 95 (182)
.++||+||||||+|+++|+.|++ .|++|+||||.+.+.... .+..+.+.. +.+.++.+... +......
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~------~Gi~v~viE~~~~~~~~~-ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAPEPFPGS-RGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcCc-cceeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence 35899999999999999999999 899999999987654222 222233332 23333333322 1111000
Q ss_pred chhhhHHHHHhhcc---CCCCC-CCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE--
Q psy2240 96 VHEDKFAYLTKSKR---IGIPI-LPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-- 168 (182)
Q Consensus 96 ~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-- 168 (182)
. .+..... ..... ... .....+....+++..+.+.|.+.+.+.|++|++++++++++.++++..+.+
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~ 148 (502)
T PRK06184 75 R------IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAG 148 (502)
T ss_pred e------EEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEe
Confidence 0 0000000 00000 000 000111245788889999999999888999999999999987666543322
Q ss_pred ------EeCCEEEecCCC
Q psy2240 169 ------ATGDVGIAKDGS 180 (182)
Q Consensus 169 ------~~~~~vi~adG~ 180 (182)
...++||+|||+
T Consensus 149 ~~~~~~i~a~~vVgADG~ 166 (502)
T PRK06184 149 PAGEETVRARYLVGADGG 166 (502)
T ss_pred CCCeEEEEeCEEEECCCC
Confidence 346999999997
No 11
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=7.9e-17 Score=106.48 Aligned_cols=131 Identities=26% Similarity=0.437 Sum_probs=92.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.+.||+|||+||+||++|+.|++ +|++|+++||.-.+||..+.++.+.+.-. -.+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk------~g~kV~i~E~~ls~GGG~w~GGmlf~~iV------------------v~~~ 84 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGGGIWGGGMLFNKIV------------------VREE 84 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh------CCceEEEEEeecccCCcccccccccceee------------------ecch
Confidence 35799999999999999999999 89999999999999887776655422111 0001
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT---------- 170 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~---------- 170 (182)
-..+... +..+.. ....+.+..+...+...|...+.+.|++|+..+.|+++..-++.++.|+..
T Consensus 85 a~~iL~e--~gI~ye----~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l 158 (262)
T COG1635 85 ADEILDE--FGIRYE----EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL 158 (262)
T ss_pred HHHHHHH--hCCcce----ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence 1111111 111111 122225677888999999999999999999999999987634436666443
Q ss_pred --------CCEEEecCCCC
Q psy2240 171 --------GDVGIAKDGSP 181 (182)
Q Consensus 171 --------~~~vi~adG~~ 181 (182)
+++||.+.|+.
T Consensus 159 hvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 159 HVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ccCcceeeEEEEEeCCCCc
Confidence 48899999973
No 12
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.74 E-value=8.9e-17 Score=111.94 Aligned_cols=130 Identities=27% Similarity=0.465 Sum_probs=87.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.++||+|||||++|+++|+.|++ +|++|+||||...+++..+.++.+.+.. ......
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~------~G~~V~vlEk~~~~Ggg~~~gg~~~~~~-----------------~~~~~~ 76 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAFGGGSWGGGMLFSKI-----------------VVEKPA 76 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCccccCCCcceecc-----------------cccchH
Confidence 46899999999999999999999 8999999999998876554333221110 000111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEEEE-----------
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGI----------- 168 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~v----------- 168 (182)
..++.. +.++.. ....+.+..++..+.+.|.+.+.+.|+++++++.|+++..++++ ++.++
T Consensus 77 ~~~l~~---~gi~~~----~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 77 HEILDE---FGIRYE----DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred HHHHHH---CCCCee----eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 122221 112111 01112345578899999999999999999999999999875542 44443
Q ss_pred -------EeCCEEEecCCC
Q psy2240 169 -------ATGDVGIAKDGS 180 (182)
Q Consensus 169 -------~~~~~vi~adG~ 180 (182)
+.+++||.|+|+
T Consensus 150 ~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred CCCCCEEEEcCEEEEeecC
Confidence 235888999885
No 13
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.74 E-value=2.2e-17 Score=122.62 Aligned_cols=151 Identities=23% Similarity=0.208 Sum_probs=91.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc----cccChh--HHhhhhhhHHhcCCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG----AVIDPI--ALNELLPDWKDLGAPLN 93 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~ 93 (182)
...+||+||||||+|+++|+.|++ +|++|+||||.+.+....... ..+.+. .+.+.++.|........
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~------~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD------AGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc------CCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence 456899999999999999999999 899999999987543111100 112222 33444555554321111
Q ss_pred ccchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240 94 TPVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---- 167 (182)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---- 167 (182)
...... ..+... ....++.. . ......++.+++..+.+.|.+.+++.|++++++++|++++.++++..+.
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g 153 (392)
T PRK08773 78 QPYRRM--RVWDAGGGGELGFDAD-T-LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDG 153 (392)
T ss_pred CcccEE--EEEeCCCCceEEechh-c-cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCC
Confidence 111000 000000 00111100 0 0011125678899999999999999999999999999998755443321
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 154 ~~~~a~~vV~AdG~ 167 (392)
T PRK08773 154 RRLEAALAIAADGA 167 (392)
T ss_pred CEEEeCEEEEecCC
Confidence 2456899999997
No 14
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.73 E-value=2.4e-17 Score=121.68 Aligned_cols=148 Identities=28% Similarity=0.338 Sum_probs=74.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc---cccccChh---HHhhhhhhHHhcCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL---SGAVIDPI---ALNELLPDWKDLGAPLNTPV 96 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 96 (182)
|||+|||||++|+++|+.|++ .|.+|+||||.+..+.... .|.++-.. ....+..........+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~------~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE------KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 699999999999999999999 8999999999998875432 22222111 11111111111111221111
Q ss_pred ----hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240 97 ----HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----- 167 (182)
Q Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----- 167 (182)
..+.+.++...+ .......+...++ ..-....+...|.+.+++.|++|+++++|.+|+.++++ +..
T Consensus 75 ~~f~~~d~~~ff~~~G-v~~~~~~~gr~fP---~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~ 149 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELG-VPTKIEEDGRVFP---KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKN 149 (409)
T ss_dssp HHS-HHHHHHHHHHTT---EEE-STTEEEE---TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETT
T ss_pred hcCCHHHHHHHHHhcC-CeEEEcCCCEECC---CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccC
Confidence 123344444322 2222211111111 12245689999999999999999999999999875544 333
Q ss_pred ---EEeCCEEEecCCCC
Q psy2240 168 ---IATGDVGIAKDGSP 181 (182)
Q Consensus 168 ---v~~~~~vi~adG~~ 181 (182)
+.++.+|||++|.+
T Consensus 150 ~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 150 GGEYEADAVILATGGKS 166 (409)
T ss_dssp TEEEEESEEEE----SS
T ss_pred cccccCCEEEEecCCCC
Confidence 34567888988875
No 15
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.73 E-value=3.1e-17 Score=120.99 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=90.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc---ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI---LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+||+||||||+|+++|+.|++ .|++|+|+|+.+...... ..+..+.+. .+.+.++.|+.... ...++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~------~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~-~~~~~~ 74 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ------KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEK-FVAEMQ 74 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc------CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHh-hcCCCc
Confidence 689999999999999999999 899999999975322111 112223333 24455555654321 111111
Q ss_pred hhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE----EEe
Q psy2240 98 EDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG----IAT 170 (182)
Q Consensus 98 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~----v~~ 170 (182)
... ...... ...+... .....++.+++..|.+.|.+.+.+.+ ++++++++++++..++++..+. ...
T Consensus 75 ~~~--~~~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~ 148 (374)
T PRK06617 75 DIY--VVDNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIK 148 (374)
T ss_pred EEE--EEECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEe
Confidence 100 000000 0111110 11122688999999999999998865 8999999999998755544332 345
Q ss_pred CCEEEecCCC
Q psy2240 171 GDVGIAKDGS 180 (182)
Q Consensus 171 ~~~vi~adG~ 180 (182)
.++||+|||.
T Consensus 149 adlvIgADG~ 158 (374)
T PRK06617 149 CNLLIICDGA 158 (374)
T ss_pred eCEEEEeCCC
Confidence 6999999997
No 16
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.73 E-value=4.3e-17 Score=121.47 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=89.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-------ccccccCh--hHHhhhhhhHHhcCCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-------LSGAVIDP--IALNELLPDWKDLGAPL 92 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~ 92 (182)
++||+||||||+|+++|+.|++ .|++|+|||+.+...... ..+..+.+ ..+.+.++.|.......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~ 75 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG------SGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARR 75 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc------CCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence 4799999999999999999999 899999999986321100 01112222 23334445454321110
Q ss_pred CccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240 93 NTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----- 167 (182)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----- 167 (182)
..+... +..+....................++.+++..+.+.|.+.+++.|+++++++++++++.++++..+.
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 153 (405)
T PRK05714 76 ASPYSE--MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR 153 (405)
T ss_pred Ccccee--EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence 001000 0000000000000000000011124678888999999999988899999999999998766554332
Q ss_pred EEeCCEEEecCCC
Q psy2240 168 IATGDVGIAKDGS 180 (182)
Q Consensus 168 v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 154 ~~~a~~vVgAdG~ 166 (405)
T PRK05714 154 QLRAPLVVAADGA 166 (405)
T ss_pred EEEeCEEEEecCC
Confidence 3456999999997
No 17
>PRK06834 hypothetical protein; Provisional
Probab=99.73 E-value=1.8e-16 Score=120.23 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=90.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccchh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVHE 98 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (182)
.++||+||||||+|+++|+.|++ +|++|+||||.+.+......+..+.+..+ .+.++.|....... .....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~------~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~-~~~~~ 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL------AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQG-QVAQV 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcC-Ccccc
Confidence 45899999999999999999999 89999999998754311111222333332 33334444321110 00000
Q ss_pred hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240 99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV 173 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~ 173 (182)
..+ ....+.... .+...+..+.+.+..+.+.|.+.+++.|++|+++++|++++.++++..+. ....++
T Consensus 75 ~~~----~~~~~~~~~---~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~ 147 (488)
T PRK06834 75 TGF----AATRLDISD---FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQY 147 (488)
T ss_pred cee----eeEeccccc---CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 000 000111111 11111224567888999999999998999999999999998766554332 345699
Q ss_pred EEecCCC
Q psy2240 174 GIAKDGS 180 (182)
Q Consensus 174 vi~adG~ 180 (182)
||+|||+
T Consensus 148 vVgADG~ 154 (488)
T PRK06834 148 LVGCDGG 154 (488)
T ss_pred EEEecCC
Confidence 9999997
No 18
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.72 E-value=9.7e-17 Score=118.85 Aligned_cols=144 Identities=31% Similarity=0.395 Sum_probs=88.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccccccccChhHH--hhhhhhH---HhcCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILSGAVIDPIAL--NELLPDW---KDLGAPLNTP 95 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~ 95 (182)
.+||+||||||+|+++|+.|++ .|++|+|||+.+ ..... .-+..+.+..+ .+.++.+ ..........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~------~G~~V~l~E~~~~~~~~~-~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~ 74 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR------AGLDVTLLERAPRELLER-GRGIALSPNALRALERLGLWDRLEALGVPPLHV 74 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEccCccccccC-ceeeeecHhHHHHHHHcCChhhhhhccCCceee
Confidence 4699999999999999999999 899999999983 22111 12222333322 2223321 1111111110
Q ss_pred c--hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----
Q psy2240 96 V--HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG----- 167 (182)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~----- 167 (182)
. ..... ....++...... ....+.+++..+...|.+.+.+.+ ++++++++|+.++.+++...+.
T Consensus 75 ~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG 146 (387)
T COG0654 75 MVVDDGGR----RLLIFDAAELGR----GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDG 146 (387)
T ss_pred EEEecCCc----eeEEecccccCC----CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCC
Confidence 0 00000 000111111111 233778999999999999998865 9999999999998866443332
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
...++++|+|||.
T Consensus 147 ~~~~a~llVgADG~ 160 (387)
T COG0654 147 ETLDADLLVGADGA 160 (387)
T ss_pred cEEecCEEEECCCC
Confidence 2357999999996
No 19
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.72 E-value=4.6e-17 Score=119.06 Aligned_cols=150 Identities=24% Similarity=0.307 Sum_probs=87.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhc---CC--CCCc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDL---GA--PLNT 94 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~---~~--~~~~ 94 (182)
++||+||||||+|+++|+.|++ +|++|+||||.+...... .+..+.+..+ .+.++.+... .. ....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~------~G~~v~i~E~~~~~~~~~-~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 73 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR------AGIDVTIIERRPDPRPKG-RGIGLSPNSLRILQRLGLLDEILARGSPHEVMR 73 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH------TTCEEEEEESSSSCCCSS-SSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEE
T ss_pred CceEEEECCCHHHHHHHHHHHh------cccccccchhcccccccc-cccccccccccccccccchhhhhhhccccccee
Confidence 4799999999999999999999 899999999998754322 2233333332 2222333321 10 0000
Q ss_pred cchhhhHHHH---HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240 95 PVHEDKFAYL---TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---- 167 (182)
Q Consensus 95 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---- 167 (182)
......+... ...... ..... ..........+++..+.+.|.+.+++.|+++++++++++++.++++....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~ 151 (356)
T PF01494_consen 74 IFFYDGISDSRIWVENPQI-REDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG 151 (356)
T ss_dssp EEEEEETTTSEEEEEEEEE-EEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred eEeecccCCccceeeeccc-ceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc
Confidence 0000000000 000000 00000 01122235678899999999999999999999999999998766553322
Q ss_pred ------EEeCCEEEecCCC
Q psy2240 168 ------IATGDVGIAKDGS 180 (182)
Q Consensus 168 ------v~~~~~vi~adG~ 180 (182)
.+..++||+|||+
T Consensus 152 ~~g~~~~i~adlvVgADG~ 170 (356)
T PF01494_consen 152 EDGEEETIEADLVVGADGA 170 (356)
T ss_dssp CTCEEEEEEESEEEE-SGT
T ss_pred cCCceeEEEEeeeecccCc
Confidence 2346899999997
No 20
>PRK08244 hypothetical protein; Provisional
Probab=99.71 E-value=1.8e-16 Score=120.83 Aligned_cols=146 Identities=23% Similarity=0.342 Sum_probs=90.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccchhh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
++||+||||||+|+++|+.|++ .|++|+||||.+..... ..+..+.+.. +.+.++.++..... .......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viEr~~~~~~~-~ra~~l~~~~~e~l~~lGl~~~l~~~-~~~~~~~ 73 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL------AGVKTCVIERLKETVPY-SKALTLHPRTLEILDMRGLLERFLEK-GRKLPSG 73 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCC-cceeEecHHHHHHHHhcCcHHHHHhh-cccccce
Confidence 4799999999999999999999 89999999999764321 1222333332 23334443332110 0000000
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EEeC
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IATG 171 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~~~ 171 (182)
.+ ........+... ....+..+.+++..+.+.|.+.+++.|+++++++++++++.++++..+. ....
T Consensus 74 ~~--~~~~~~~~~~~~---~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a 148 (493)
T PRK08244 74 HF--AGLDTRLDFSAL---DTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTS 148 (493)
T ss_pred EE--ecccccCCcccC---CCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEe
Confidence 00 000011111111 1111224568899999999999988899999999999998765553322 2356
Q ss_pred CEEEecCCC
Q psy2240 172 DVGIAKDGS 180 (182)
Q Consensus 172 ~~vi~adG~ 180 (182)
++||+|||.
T Consensus 149 ~~vVgADG~ 157 (493)
T PRK08244 149 SYVVGADGA 157 (493)
T ss_pred CEEEECCCC
Confidence 999999997
No 21
>PRK06996 hypothetical protein; Provisional
Probab=99.71 E-value=1e-16 Score=119.23 Aligned_cols=148 Identities=21% Similarity=0.261 Sum_probs=92.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCC----ceEEEEecCCCCCCccc-cccccC--hhHHhhhhhhHHhcCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE----LKVCLVEKAAEVGGHIL-SGAVID--PIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g----~~v~vlE~~~~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (182)
..+||+||||||+|+++|+.|++ +| ++|+|+|+.+....... -+..+. ...+.+.++.|......+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~------~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~ 83 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLAR------RSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIE 83 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc------CCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCccc
Confidence 45799999999999999999998 65 58999999864321111 111222 2344555666665332222
Q ss_pred ccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------
Q psy2240 94 TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------ 167 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------ 167 (182)
.....+.. ......+.. .+.. ....++.+++..+.+.|.+.+.+.++++++++++++++.+.++..+.
T Consensus 84 ~~~~~~~~----~~g~~~~~~-~~~~-~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g 157 (398)
T PRK06996 84 HIHVSQRG----HFGRTLIDR-DDHD-VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQG 157 (398)
T ss_pred EEEEecCC----CCceEEecc-cccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCc
Confidence 11100000 000000100 0111 11236789999999999999999999999999999997765554332
Q ss_pred --EEeCCEEEecCCC
Q psy2240 168 --IATGDVGIAKDGS 180 (182)
Q Consensus 168 --v~~~~~vi~adG~ 180 (182)
....++||+|||+
T Consensus 158 ~~~i~a~lvIgADG~ 172 (398)
T PRK06996 158 ARTLRARIAVQAEGG 172 (398)
T ss_pred ceEEeeeEEEECCCC
Confidence 3456999999995
No 22
>PRK09126 hypothetical protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=118.18 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=86.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC--cccccc--ccChh--HHhhhhhhHHhcCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG--HILSGA--VIDPI--ALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g--~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~ 94 (182)
+++||+||||||+|+++|+.|++ +|++|+|+||.+.+.- ....+. .+.+. .+.+.++.+.........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAG------SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 36899999999999999999999 8999999999976421 111111 12221 222333333322111000
Q ss_pred cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240 95 PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----I 168 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v 168 (182)
+..... ......................++.+++..+.+.|.+.+.+ .|++|+++++|++++.++++..+. .
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~ 153 (392)
T PRK09126 76 PLRDAK--VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRR 153 (392)
T ss_pred ccceEE--EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCE
Confidence 100000 00000000000000000011124567888899999888754 689999999999998755443221 3
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 154 ~~a~~vI~AdG~ 165 (392)
T PRK09126 154 LTARLLVAADSR 165 (392)
T ss_pred EEeCEEEEeCCC
Confidence 456899999996
No 23
>PRK07190 hypothetical protein; Provisional
Probab=99.70 E-value=2.7e-16 Score=119.24 Aligned_cols=147 Identities=21% Similarity=0.279 Sum_probs=89.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc-
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP- 95 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~- 95 (182)
.+||+||||||+|+++|+.|++ .|++|+||||.+.+.... .+..+.+.. +.+.++.|... .......
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar------~Gi~V~llEr~~~~~~~g-ra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL------CGLNTVIVDKSDGPLEVG-RADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH------cCCCEEEEeCCCcccccc-cceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 4799999999999999999999 899999999998654221 122233332 23333433322 1111110
Q ss_pred chhhhHHHHHhhccCCCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EE
Q psy2240 96 VHEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IA 169 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~ 169 (182)
..... ..+. .......... ...+....+++..+++.|.+.+++.|++++++++|++++.++++..+. ..
T Consensus 78 ~~~~g-~~i~----~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v 152 (487)
T PRK07190 78 VWANG-KFIS----RQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERI 152 (487)
T ss_pred EecCC-ceEe----eccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEE
Confidence 00000 0000 0000000000 011113457788899999999998999999999999998866654332 34
Q ss_pred eCCEEEecCCC
Q psy2240 170 TGDVGIAKDGS 180 (182)
Q Consensus 170 ~~~~vi~adG~ 180 (182)
.+++||+|||+
T Consensus 153 ~a~~vVgADG~ 163 (487)
T PRK07190 153 QSRYVIGADGS 163 (487)
T ss_pred EeCEEEECCCC
Confidence 56999999997
No 24
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.70 E-value=9.1e-17 Score=118.96 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=87.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc----ccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI----LSGAVIDPIA--LNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (182)
||+|||||++|+++|+.|++ +|++|+|+||.+.++... ..+..+.+.. ..+.++.+............
T Consensus 1 dViIvGaG~aGl~~A~~L~~------~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 74 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR------SGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIR 74 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc------CCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCce
Confidence 79999999999999999999 899999999998653211 1112233322 22233333222110001100
Q ss_pred hhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----EE
Q psy2240 98 EDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----IA 169 (182)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----v~ 169 (182)
. +..+..... ..+... .. ......+.+++..+.+.|.+.+.+.+ ++++++++|++++.++++..+. ..
T Consensus 75 ~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~ 150 (385)
T TIGR01988 75 D--IHVSDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQL 150 (385)
T ss_pred E--EEEEeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEE
Confidence 0 000000000 001100 00 01122567899999999999998887 9999999999998755443221 23
Q ss_pred eCCEEEecCCC
Q psy2240 170 TGDVGIAKDGS 180 (182)
Q Consensus 170 ~~~~vi~adG~ 180 (182)
..++||+|||.
T Consensus 151 ~~~~vi~adG~ 161 (385)
T TIGR01988 151 RARLLVGADGA 161 (385)
T ss_pred EeeEEEEeCCC
Confidence 46899999996
No 25
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.70 E-value=1.2e-16 Score=119.03 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=88.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC-CCCC-Ccc--ccccccCh--hHHhhhhhhHHhcCCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA-AEVG-GHI--LSGAVIDP--IALNELLPDWKDLGAPLN 93 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~-~~~~-g~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 93 (182)
|..+||+||||||+|+++|+.|++ .|++|+|||+. +... +.. .-+..+.+ ..+.+.++.|+.......
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~ 75 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKE------SDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRA 75 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHh------CCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhC
Confidence 346899999999999999999999 89999999996 3211 100 01112222 234445555554321111
Q ss_pred ccchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---
Q psy2240 94 TPVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG--- 167 (182)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~--- 167 (182)
.+... +..+... ....+.. ........++.+++..+.+.|.+.+.+ .+++++++++|++++.++++..+.
T Consensus 76 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~ 151 (405)
T PRK08850 76 APYIA--MEVWEQDSFARIEFDA--ESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDN 151 (405)
T ss_pred CcccE--EEEEeCCCCceEEEec--cccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECC
Confidence 11100 0000000 0000100 000011125677888899999998876 479999999999998755543332
Q ss_pred --EEeCCEEEecCCC
Q psy2240 168 --IATGDVGIAKDGS 180 (182)
Q Consensus 168 --v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 152 g~~~~a~lvIgADG~ 166 (405)
T PRK08850 152 GQALTAKLVVGADGA 166 (405)
T ss_pred CCEEEeCEEEEeCCC
Confidence 3456999999996
No 26
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.70 E-value=4e-16 Score=111.52 Aligned_cols=140 Identities=31% Similarity=0.398 Sum_probs=87.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
+||+|||||++|+++|+.|++ .|++|+||||.+..+. ..++..+.+..+. .+..+... ........ .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~------~g~~v~vie~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~---~~~~~~~~--~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPRY-KPCGGALSPRVLE-ELDLPLEL---IVNLVRGA--R 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCc-ccccCccCHhHHH-HhcCCchh---hhhheeeE--E
Confidence 699999999999999999999 8999999999986653 2233333333322 11111100 00000000 0
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA 176 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~ 176 (182)
++...... . ..+......+.+++..+.+.|.+.+++.|++++++++|+++..++++..+. ....++||.
T Consensus 68 ~~~~~~~~-~----~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 68 FFSPNGDS-V----EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred EEcCCCcE-E----EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEE
Confidence 00000000 0 001112235678999999999999999999999999999997755443221 345689999
Q ss_pred cCCC
Q psy2240 177 KDGS 180 (182)
Q Consensus 177 adG~ 180 (182)
|+|.
T Consensus 143 a~G~ 146 (295)
T TIGR02032 143 ADGS 146 (295)
T ss_pred CCCc
Confidence 9996
No 27
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.69 E-value=1.2e-16 Score=119.10 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=88.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCcc-ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHI-LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+||+||||||+|+++|+.|++ +| ++|+||||.+...... ..+..+.+. .+.+.++.|+..... .....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~------~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~ 74 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQ------AAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPE-AQPIT 74 (403)
T ss_pred CCEEEECccHHHHHHHHHHhc------CCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhh-cCccc
Confidence 799999999999999999999 64 9999999987532111 122233332 333444444332110 11100
Q ss_pred hhhHHHHHhhcc-----CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240 98 EDKFAYLTKSKR-----IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----- 167 (182)
Q Consensus 98 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----- 167 (182)
.. ........ .............+..+.+++..+.+.|.+.+.+.|++++++++|++++.++++..+.
T Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 152 (403)
T PRK07333 75 DM--VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS 152 (403)
T ss_pred EE--EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence 00 00000000 0000000000011124578999999999999988999999999999998655443221
Q ss_pred EEeCCEEEecCCC
Q psy2240 168 IATGDVGIAKDGS 180 (182)
Q Consensus 168 v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 153 ~~~ad~vI~AdG~ 165 (403)
T PRK07333 153 VLEARLLVAADGA 165 (403)
T ss_pred EEEeCEEEEcCCC
Confidence 2456999999996
No 28
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.69 E-value=3e-16 Score=116.19 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=87.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cc-cccc--cccCh--hHHhhhhhhHHhcCCCCCc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GH-ILSG--AVIDP--IALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~-~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 94 (182)
++||+||||||+|+++|+.|++ .|++|+|||+.+... .. .... ..+.+ ..+.+.++.|+........
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~------~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~ 76 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK------QGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVC 76 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh------CCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCC
Confidence 4799999999999999999999 899999999875211 00 0000 12222 3444555655543211001
Q ss_pred cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240 95 PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----I 168 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v 168 (182)
+..... .+........+.. .... ....++.+.+..+...|.+.+.. .+++++++++|++++.++++..+. .
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~ 153 (384)
T PRK08849 77 PYKRLE-TWEHPECRTRFHS-DELN-LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAE 153 (384)
T ss_pred ccceEE-EEeCCCceEEecc-cccC-CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCE
Confidence 110000 0000000000000 0000 11124566667888889888766 479999999999998766654442 3
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 154 ~~~~lvIgADG~ 165 (384)
T PRK08849 154 IEAKWVIGADGA 165 (384)
T ss_pred EEeeEEEEecCC
Confidence 456999999997
No 29
>PRK06185 hypothetical protein; Provisional
Probab=99.69 E-value=2.9e-16 Score=117.18 Aligned_cols=151 Identities=21% Similarity=0.335 Sum_probs=88.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccCh--hHHhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP--IALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
..++||+|||||++|+++|+.|++ .|++|+|||+.+..... ..+..+.+ ..+.+.++.|............
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~------~G~~v~liE~~~~~~~~-~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~ 76 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR------AGVDVTVLEKHADFLRD-FRGDTVHPSTLELMDELGLLERFLELPHQKVR 76 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccCcc-ccCceeChhHHHHHHHcCChhHHhhcccceee
Confidence 456899999999999999999999 89999999998643211 11222222 2344444555443210001110
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---------
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG--------- 167 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~--------- 167 (182)
. +.+.........-.+.......+..+.+++..+.+.|.+.+.+ .+++++++++|+++..+++ .+.+
T Consensus 77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~-~v~~v~~~~~~g~ 153 (407)
T PRK06185 77 T--LRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG-RVTGVRARTPDGP 153 (407)
T ss_pred e--EEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-EEEEEEEEcCCCc
Confidence 0 0000000000000000011111224567888999999998876 4899999999999987543 3321
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 154 ~~i~a~~vI~AdG~ 167 (407)
T PRK06185 154 GEIRADLVVGADGR 167 (407)
T ss_pred EEEEeCEEEECCCC
Confidence 3456899999997
No 30
>PRK07045 putative monooxygenase; Reviewed
Probab=99.69 E-value=6.6e-16 Score=114.57 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHE 98 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
..+||+||||||+|+++|+.|++ .|++|+|+||.+.+.... .+..+.+. .+.+.++.|...........
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~------~G~~v~v~E~~~~~~~~~-~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~-- 74 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA------RGHSVTVVERAARNRAQN-GADLLKPSGIGVVRAMGLLDDVFAAGGLRR-- 74 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh------cCCcEEEEeCCCcccCCC-cccccCccHHHHHHHcCCHHHHHhcccccc--
Confidence 45799999999999999999999 899999999998653211 11112222 23344444433211000000
Q ss_pred hhHHHHHhhc-cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE-------E
Q psy2240 99 DKFAYLTKSK-RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI-------A 169 (182)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v-------~ 169 (182)
..+..+.... ....+. ...... .....+++..+.+.|.+.+.. .|++++++++|++++.++++.++.+ .
T Consensus 75 ~~~~~~~~g~~~~~~~~-~~~~~~-g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~ 152 (388)
T PRK07045 75 DAMRLYHDKELIASLDY-RSASAL-GYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERV 152 (388)
T ss_pred cceEEecCCcEEEEecC-CccccC-CceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEE
Confidence 0000000000 000111 000001 112357888999999998854 6799999999999988666653333 3
Q ss_pred eCCEEEecCCC
Q psy2240 170 TGDVGIAKDGS 180 (182)
Q Consensus 170 ~~~~vi~adG~ 180 (182)
..++||+|||.
T Consensus 153 ~~~~vIgADG~ 163 (388)
T PRK07045 153 APTVLVGADGA 163 (388)
T ss_pred ECCEEEECCCC
Confidence 46999999997
No 31
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.68 E-value=4.7e-16 Score=116.77 Aligned_cols=143 Identities=22% Similarity=0.217 Sum_probs=81.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
.+++||+||||||+|+++|+.|++ .|++|+||||.+... ..+++.+....+ +.++.+.... ...+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~------~G~~VlllEr~~~~~--k~cgg~i~~~~l-~~lgl~~~~~---~~~i~-- 102 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK------GGIETFLIERKLDNA--KPCGGAIPLCMV-GEFDLPLDII---DRKVT-- 102 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCC--CCccccccHhHH-hhhcCcHHHH---HHHhh--
Confidence 356899999999999999999999 899999999985321 224444433222 1122111100 00000
Q ss_pred hHHHHHhh-ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC---CCcEEE--------
Q psy2240 100 KFAYLTKS-KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKG-------- 167 (182)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~g~~~~-------- 167 (182)
.+.++... ....+.. . .........++|..|.+.|.+.+.+.|++++.+ .++++.... +...+.
T Consensus 103 ~~~~~~p~~~~v~~~~--~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~ 178 (450)
T PLN00093 103 KMKMISPSNVAVDIGK--T-LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGS 178 (450)
T ss_pred hheEecCCceEEEecc--c-CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccc
Confidence 00000000 0000100 0 000011235899999999999999999999875 577775321 122221
Q ss_pred ------EEeCCEEEecCCC
Q psy2240 168 ------IATGDVGIAKDGS 180 (182)
Q Consensus 168 ------v~~~~~vi~adG~ 180 (182)
....++||+|||+
T Consensus 179 ~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 179 GAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCccEEEeCEEEEcCCc
Confidence 2356999999996
No 32
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.68 E-value=3.1e-16 Score=116.44 Aligned_cols=150 Identities=22% Similarity=0.236 Sum_probs=88.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc---cc--cccccChh--HHhhhhhhHHhcCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH---IL--SGAVIDPI--ALNELLPDWKDLGAPLN 93 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~---~~--~~~~~~~~--~~~~~~~~~~~~~~~~~ 93 (182)
..+||+||||||+|+++|+.|++ .|++|+|||+.+...-. .. ....+.+. .+.+.++.|........
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~------~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc------CCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 45899999999999999999999 89999999998632210 00 00112222 23344455543321100
Q ss_pred ccchh-hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE----
Q psy2240 94 TPVHE-DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG---- 167 (182)
Q Consensus 94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~---- 167 (182)
.+... ..+.+ ......+.. .... ....++.+++..+.+.|.+.+.+. |++++++++|+++..++++..+.
T Consensus 78 ~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g 153 (391)
T PRK08020 78 HPYRRLETWEW--ETAHVVFDA-AELK-LPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADG 153 (391)
T ss_pred cccceEEEEeC--CCCeEEecc-cccC-CCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC
Confidence 00000 00000 000000000 0000 112256789999999999998775 89999999999998655543332
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 154 ~~~~a~~vI~AdG~ 167 (391)
T PRK08020 154 EEIQAKLVIGADGA 167 (391)
T ss_pred CEEEeCEEEEeCCC
Confidence 3456999999997
No 33
>PRK06126 hypothetical protein; Provisional
Probab=99.68 E-value=4e-16 Score=120.28 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=87.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP 95 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 95 (182)
.++||+||||||+|+++|+.|++ +|++|+||||.+...... .+..+.+.. +.+.++.+... +......
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~------~G~~v~viEr~~~~~~~~-ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~ 78 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR------RGVDSILVERKDGTAFNP-KANTTSARSMEHFRRLGIADEVRSAGLPVDYP 78 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCCC-ccccCCHHHHHHHHhcChHHHHHhhcCCcccc
Confidence 45799999999999999999999 899999999987543211 122233332 22333333321 2111000
Q ss_pred ----c----hhhhHHHHHhhccCC-CCCC--CCCC-CCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCC
Q psy2240 96 ----V----HEDKFAYLTKSKRIG-IPIL--PGMP-MNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD 162 (182)
Q Consensus 96 ----~----~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~ 162 (182)
. ....+..+....... .... .... ......+.+++..+.+.|.+.+++ .+++|+++++|++++.+++
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 79 TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD 158 (545)
T ss_pred CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC
Confidence 0 000000000000000 0000 0000 011124568888999999999876 5899999999999987655
Q ss_pred CcEEE----------EEeCCEEEecCCC
Q psy2240 163 GSVKG----------IATGDVGIAKDGS 180 (182)
Q Consensus 163 g~~~~----------v~~~~~vi~adG~ 180 (182)
+..+. ....++||+|||+
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~ 186 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGA 186 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCc
Confidence 43322 2345899999997
No 34
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.68 E-value=1.4e-16 Score=117.85 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=87.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCcc---ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHI---LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
||+||||||+|+++|+.|++ +| ++|+|+||.+...... ..+..+.+. ...+.++.+...... .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~-~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR------LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPF-ATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhc------CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhh-cCccc
Confidence 79999999999999999999 89 9999999997653211 111223332 223333433332100 00000
Q ss_pred hhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----EE
Q psy2240 98 EDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----IA 169 (182)
Q Consensus 98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v~ 169 (182)
... ..... ....+.. ..+. .....+.+++..|.+.|.+.+.+ .|++++++++|++++.++++..+. ..
T Consensus 74 ~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~ 149 (382)
T TIGR01984 74 DIH--VSDQGHFGATHLRA-SEFG-LPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQL 149 (382)
T ss_pred eEE--EEcCCCCceEEech-hhcC-CCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEE
Confidence 000 00000 0000000 0000 11125678999999999999988 599999999999998755543332 24
Q ss_pred eCCEEEecCCC
Q psy2240 170 TGDVGIAKDGS 180 (182)
Q Consensus 170 ~~~~vi~adG~ 180 (182)
..++||+|||.
T Consensus 150 ~ad~vV~AdG~ 160 (382)
T TIGR01984 150 RAKLLIAADGA 160 (382)
T ss_pred EeeEEEEecCC
Confidence 56999999996
No 35
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.68 E-value=3.7e-16 Score=120.26 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=89.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (182)
+..+||+||||||+|+++|+.|++ .|++|+||||.+....... +..+.+.. +.+.++.+....... ...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~------~G~~v~v~Er~~~~~~~~r-a~~l~~~~~~~L~~lGl~~~l~~~~-~~~- 78 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWPTLYDLPR-AVGIDDEALRVLQAIGLADEVLPHT-TPN- 78 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCc-eeeeCHHHHHHHHHcCChhHHHhhc-ccC-
Confidence 456899999999999999999999 8999999999986543222 22233222 222233332211000 000
Q ss_pred hhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE------
Q psy2240 98 EDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI------ 168 (182)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v------ 168 (182)
..+.++..... ..++.........+..+.+++..+.+.|.+.+.+ .|++|+++++|++++.++++..+.+
T Consensus 79 -~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 79 -HGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred -CceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 00001000000 0011000000001123567888999999998877 4899999999999988666543322
Q ss_pred ---EeCCEEEecCCC
Q psy2240 169 ---ATGDVGIAKDGS 180 (182)
Q Consensus 169 ---~~~~~vi~adG~ 180 (182)
...++||+|||+
T Consensus 158 ~~~i~ad~vVgADG~ 172 (538)
T PRK06183 158 RETVRARYVVGCDGA 172 (538)
T ss_pred EEEEEEEEEEecCCC
Confidence 345899999997
No 36
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.68 E-value=3e-15 Score=113.22 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240 122 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY 159 (182)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~ 159 (182)
.+....+++..+.+.|.+.+++.|++|+++++|++++.
T Consensus 174 ~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~ 211 (460)
T TIGR03329 174 SPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE 211 (460)
T ss_pred eCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee
Confidence 34456889999999999999999999999999999874
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.68 E-value=3.1e-16 Score=116.32 Aligned_cols=150 Identities=20% Similarity=0.260 Sum_probs=87.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC--hhHHhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID--PIALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+..+||+|||||++|+++|+.|++ .|++|+|||+.+.... .... .+. ...+.+.++.|...... ..+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~------~G~~v~liE~~~~~~~-~r~~-~l~~~s~~~l~~lgl~~~~~~~-~~~~~ 75 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR------AGASVALVAPEPPYAD-LRTT-ALLGPSIRFLERLGLWARLAPH-AAPLQ 75 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc------CCCeEEEEeCCCCCCC-cchh-hCcHHHHHHHHHhCchhhhHhh-cceee
Confidence 345799999999999999999999 8999999999875431 1111 121 12233444545433111 00000
Q ss_pred hhhHHHHHhhccC-CC--CCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240 98 EDKFAYLTKSKRI-GI--PILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----I 168 (182)
Q Consensus 98 ~~~~~~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v 168 (182)
. +.++...... .. ..+.... .....++.+++..+.+.|.+.+.+.+...+++++|++++.++++..+. .
T Consensus 76 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~ 153 (388)
T PRK07494 76 S--MRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTT 153 (388)
T ss_pred E--EEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCE
Confidence 0 0000000000 00 0000000 011225678999999999999987653338899999998755554332 2
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||+
T Consensus 154 ~~a~~vI~AdG~ 165 (388)
T PRK07494 154 LSARLVVGADGR 165 (388)
T ss_pred EEEeEEEEecCC
Confidence 456999999997
No 38
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.68 E-value=8.2e-16 Score=114.00 Aligned_cols=137 Identities=28% Similarity=0.409 Sum_probs=81.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC-CCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA-AEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
|||+||||||+|+++|+.|++ .|++|+|||+. +.. ..+++.+.+..+ +.++.+..... ..... .
T Consensus 1 yDVvIVGaGpAG~~aA~~La~------~G~~V~l~E~~~~~~---~~cg~~i~~~~l-~~l~i~~~~~~---~~~~~--~ 65 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR------AGIETILLERALSNI---KPCGGAIPPCLI-EEFDIPDSLID---RRVTQ--M 65 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCCCc---CcCcCCcCHhhh-hhcCCchHHHh---hhcce--e
Confidence 699999999999999999999 89999999998 221 124444433322 12211111000 00000 0
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcc--ccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------------
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNY--VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------------ 167 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------------ 167 (182)
....... ... ....+. ...+ .++|..|.++|.+.+.+.|++++.. +|+++..++++..+.
T Consensus 66 ~~~~~~~-~~~--~~~~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~ 139 (388)
T TIGR02023 66 RMISPSR-VPI--KVTIPS--EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEK 139 (388)
T ss_pred EEEcCCC-cee--eeccCC--CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcc
Confidence 0000000 000 000010 1122 5899999999999999999999765 688887655443222
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 140 ~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 140 GSVEADVVIGADGA 153 (388)
T ss_pred eEEEeCEEEECCCC
Confidence 2356999999996
No 39
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.67 E-value=6.9e-16 Score=118.98 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=88.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.++||+||||||+|+++|+.|++ .|++|+||||.+...... .+..+.+.. +.+.++.+......-. ...
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viE~~~~~~~~~-ra~~l~~~~~~~l~~lGl~~~l~~~~~-~~~ 92 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ------QGVPVVLLDDDDTLSTGS-RAICFAKRSLEIFDRLGCGERMVDKGV-SWN 92 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCCCCCCC-eEEEEcHHHHHHHHHcCCcHHHHhhCc-eee
Confidence 466899999999999999999999 899999999997543211 122233222 2223333322110000 000
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE--------E
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG--------I 168 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~--------v 168 (182)
... .+........+..........+....+++..+.+.|.+.+.+. ++++++++++++++.++++..+. .
T Consensus 93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~ 171 (547)
T PRK08132 93 VGK-VFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYT 171 (547)
T ss_pred cee-EEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEE
Confidence 000 0000000000110000000111134578889999999998774 69999999999998766554332 2
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||+
T Consensus 172 i~ad~vVgADG~ 183 (547)
T PRK08132 172 LEADWVIACDGA 183 (547)
T ss_pred EEeCEEEECCCC
Confidence 356999999996
No 40
>PRK07588 hypothetical protein; Provisional
Probab=99.67 E-value=5.3e-16 Score=115.20 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=83.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC--hhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID--PIALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
||+|||||++|+++|+.|++ .|++|+||||.+..... ..+..+. ...+.+.++.|...... ..... .+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~-g~~~~l~~~~~~~l~~lGl~~~l~~~-~~~~~--~~ 71 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR------YGHEPTLIERAPELRTG-GYMVDFWGVGYEVAKRMGITDQLREA-GYQIE--HV 71 (391)
T ss_pred eEEEECccHHHHHHHHHHHH------CCCceEEEeCCCCccCC-CeEEeccCcHHHHHHHcCCHHHHHhc-cCCcc--ce
Confidence 79999999999999999999 89999999998754311 1111111 12233334444332110 00000 00
Q ss_pred HHHHhhcc--CCCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240 102 AYLTKSKR--IGIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV 173 (182)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~ 173 (182)
.++...+. ..++. ..+. ......+.+++..|.+.|.+.+. .+++|+++++|++++.++++..+. ....++
T Consensus 72 ~~~~~~g~~~~~~~~-~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~ 149 (391)
T PRK07588 72 RSVDPTGRRKADLNV-DSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDL 149 (391)
T ss_pred EEEcCCCCEEEEecH-HHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCE
Confidence 00000000 00000 0000 01112357889999999988764 379999999999998755543331 234699
Q ss_pred EEecCCC
Q psy2240 174 GIAKDGS 180 (182)
Q Consensus 174 vi~adG~ 180 (182)
||+|||.
T Consensus 150 vIgADG~ 156 (391)
T PRK07588 150 VIGADGL 156 (391)
T ss_pred EEECCCC
Confidence 9999996
No 41
>PRK06847 hypothetical protein; Provisional
Probab=99.67 E-value=9.1e-16 Score=113.33 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=86.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP 95 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 95 (182)
...||+|||||++|+++|+.|++ .|++|+|+|+.+..... ..+-.+.+.. ..+.++.+... .......
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR------AGIAVDLVEIDPEWRVY-GAGITLQGNALRALRELGVLDECLEAGFGFDGV 75 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCccC-CceeeecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence 35689999999999999999999 89999999998754321 1122222222 12222222211 1111000
Q ss_pred chhhhHHHHHhhccC--CCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240 96 VHEDKFAYLTKSKRI--GIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----I 168 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v 168 (182)
.++...+.. ..+.........+....+++..+.+.|.+.+++.|++++++++|++++.++++..+. .
T Consensus 76 ------~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~ 149 (375)
T PRK06847 76 ------DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTT 149 (375)
T ss_pred ------EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCE
Confidence 000000000 000000000001224567889999999999988899999999999998654432221 2
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 150 ~~ad~vI~AdG~ 161 (375)
T PRK06847 150 GRYDLVVGADGL 161 (375)
T ss_pred EEcCEEEECcCC
Confidence 346899999996
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.67 E-value=9.9e-16 Score=113.62 Aligned_cols=149 Identities=22% Similarity=0.258 Sum_probs=86.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc--cccc--cccChh--HHhhhhhhHHhcCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH--ILSG--AVIDPI--ALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (182)
+.+||+|||||++|+++|+.|++ .|++|+|+||.+..... .... ..+.+. .+.+.++.|.........
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~ 77 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ------SGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLA 77 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCC
Confidence 45799999999999999999999 89999999999765321 1010 112222 222233333322100000
Q ss_pred cchhhhHHHHHh-hccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----
Q psy2240 95 PVHEDKFAYLTK-SKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG----- 167 (182)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~----- 167 (182)
..... ..... .....+.... ...+...+.+++..+.+.|.+.+++.+ ++++ +++|++++.++++..+.
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~ 152 (388)
T PRK07608 78 PVYDM--RVFGDAHARLHFSAYQ--AGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ 152 (388)
T ss_pred cceEE--EEEECCCceeEeeccc--cCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC
Confidence 00000 00000 0000000000 011122467889999999999998877 9998 89999997655543332
Q ss_pred EEeCCEEEecCCC
Q psy2240 168 IATGDVGIAKDGS 180 (182)
Q Consensus 168 v~~~~~vi~adG~ 180 (182)
....+++|+|||.
T Consensus 153 ~~~a~~vI~adG~ 165 (388)
T PRK07608 153 VLRADLVVGADGA 165 (388)
T ss_pred EEEeeEEEEeCCC
Confidence 2446899999997
No 43
>PRK11445 putative oxidoreductase; Provisional
Probab=99.66 E-value=2.2e-15 Score=110.27 Aligned_cols=141 Identities=24% Similarity=0.248 Sum_probs=84.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--C-ccccccccChhHHh--hhhhhHHhcCCCCCccch
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--G-HILSGAVIDPIALN--ELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 97 (182)
+||+||||||+|+++|+.|++ . ++|+||||.+... + ...+++.+.+.... +.++.+.... ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~------~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~-~~~~--- 70 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG------K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKD-VIAN--- 70 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc------c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcc-eeec---
Confidence 699999999999999999999 8 9999999987543 1 11244445444331 2222221000 0000
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EE
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IA 169 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~ 169 (182)
..... ... ...... ....+....+.++|..|.+.|.+.+ +.++++++++.+++++.++++..+. ..
T Consensus 71 ~~~~~--~~~--~~~~~~-~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i 144 (351)
T PRK11445 71 PQIFA--VKT--IDLANS-LTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHI 144 (351)
T ss_pred cccce--eeE--eccccc-chhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEE
Confidence 00000 000 000000 0001111234699999999998854 5689999999999998755554332 23
Q ss_pred eCCEEEecCCC
Q psy2240 170 TGDVGIAKDGS 180 (182)
Q Consensus 170 ~~~~vi~adG~ 180 (182)
..++||+|||.
T Consensus 145 ~a~~vV~AdG~ 155 (351)
T PRK11445 145 TARYLVGADGA 155 (351)
T ss_pred EeCEEEECCCC
Confidence 46999999997
No 44
>PRK07538 hypothetical protein; Provisional
Probab=99.66 E-value=4e-15 Score=111.23 Aligned_cols=144 Identities=24% Similarity=0.248 Sum_probs=85.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCccchh
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTPVHE 98 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~ 98 (182)
||+||||||+|+++|+.|++ .|++|+|+||.+.... ...+-.+.+.. ..+.++.+... .......
T Consensus 2 dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~--- 71 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ------RGIEVVVFEAAPELRP-LGVGINLLPHAVRELAELGLLDALDAIGIRTREL--- 71 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCcEEEEEcCCcccc-cCcceeeCchHHHHHHHCCCHHHHHhhCCCCcce---
Confidence 79999999999999999999 8999999999876541 11222222222 22233333321 1111100
Q ss_pred hhHHHHHhhccCCCCC-CCCCCCCCCCccccchHHHHHHHHHHHHH-cC-cEEecCCccceeEEcCCCcEEE--------
Q psy2240 99 DKFAYLTKSKRIGIPI-LPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MG-VEIYPGIPASEVLYHGDGSVKG-------- 167 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~g-v~i~~~~~v~~i~~~~~g~~~~-------- 167 (182)
.++...+..-... ......+....+.++|..|.+.|.+.+.+ .| ..|+++++|++++.++++.++.
T Consensus 72 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~ 148 (413)
T PRK07538 72 ---AYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGD 148 (413)
T ss_pred ---EEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCc
Confidence 0000000000000 00000111224568999999999999866 46 5799999999998766664443
Q ss_pred --EEeCCEEEecCCC
Q psy2240 168 --IATGDVGIAKDGS 180 (182)
Q Consensus 168 --v~~~~~vi~adG~ 180 (182)
....|+||+|||.
T Consensus 149 ~~~~~adlvIgADG~ 163 (413)
T PRK07538 149 LVSVRGDVLIGADGI 163 (413)
T ss_pred cceEEeeEEEECCCC
Confidence 2346999999996
No 45
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.66 E-value=7.2e-16 Score=114.67 Aligned_cols=150 Identities=27% Similarity=0.281 Sum_probs=86.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHE 98 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
+..||+||||||+|+++|+.|++ .|++|+|+||.+..+.. ..+-.+.+. .+.+.++.+...... ....
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~------~g~~v~v~Er~~~~~~~-g~gi~l~~~~~~~l~~lg~~~~~~~~-~~~~-- 72 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR------QGIKVKLLEQAAEIGEI-GAGIQLGPNAFSALDALGVGEAARQR-AVFT-- 72 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh------CCCcEEEEeeCcccccc-cceeeeCchHHHHHHHcCChHHHHhh-ccCC--
Confidence 35699999999999999999999 89999999999765421 122222222 222333333221100 0000
Q ss_pred hhHHHHHh-hcc-C-CCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----E
Q psy2240 99 DKFAYLTK-SKR-I-GIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----I 168 (182)
Q Consensus 99 ~~~~~~~~-~~~-~-~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----v 168 (182)
..+.++.. ... . ..+...... .+......+++..+.+.|.+.+.+.+ ++++++++++++..++++..+. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~ 152 (396)
T PRK08163 73 DHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNR 152 (396)
T ss_pred cceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCE
Confidence 00000000 000 0 000000000 01111346899999999999997764 9999999999998655443321 2
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 153 ~~ad~vV~AdG~ 164 (396)
T PRK08163 153 WTGDALIGCDGV 164 (396)
T ss_pred EecCEEEECCCc
Confidence 456999999996
No 46
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.66 E-value=5.4e-15 Score=108.71 Aligned_cols=156 Identities=28% Similarity=0.346 Sum_probs=89.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc--ccccc------ChhHHh---------hhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL--SGAVI------DPIALN---------ELLP 83 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~--~~~~~------~~~~~~---------~~~~ 83 (182)
.++||+|||||+.|+++|++|+++. +.++|+||||...++..++ +.+.. .+..+. ..+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~----p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE----PDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC----CCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence 5689999999999999999999931 3399999999987764332 11111 111110 0011
Q ss_pred hHHhcCCCCCcc------chhhh---HHHH----HhhccCCCCCC---------CC------CCCCCCCccccchHHHHH
Q psy2240 84 DWKDLGAPLNTP------VHEDK---FAYL----TKSKRIGIPIL---------PG------MPMNNHGNYVVRLGHVVK 135 (182)
Q Consensus 84 ~~~~~~~~~~~~------~~~~~---~~~~----~~~~~~~~~~~---------~~------~~~~~~~~~~~~~~~l~~ 135 (182)
.-+....++... ...+. +..+ ..+.......+ +. ...+.+.+..+++..+..
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 111111111110 01111 1111 11111111111 10 113445577899999999
Q ss_pred HHHHHHHHcCcEEecCCccceeEEcCCC-cEEE-----E-EeCCEEEecCCC
Q psy2240 136 WLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKG-----I-ATGDVGIAKDGS 180 (182)
Q Consensus 136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~-----v-~~~~~vi~adG~ 180 (182)
.|.+.++++|++++++++|++|++.++| .++. . ..++.||.|.|.
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl 209 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGL 209 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCch
Confidence 9999999999999999999999997775 2221 1 345566655553
No 47
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.66 E-value=1.3e-15 Score=113.34 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=86.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchhhh
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
-+|+||||||+|+++|+.|++ +|++|+|+||.+.... ...+-.+.+. .+.+.++.|.......... ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~------~G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~---~~ 72 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA------RGWAVTIIEKAQELSE-VGAGLQLAPNAMRHLERLGVADRLSGTGVTP---KA 72 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccCc-CCccceeChhHHHHHHHCCChHHHhhcccCc---ce
Confidence 479999999999999999999 8999999999875432 1122222232 2333344444321110000 00
Q ss_pred HHHHHhhc---cCCCCCCCCC-CCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE--------
Q psy2240 101 FAYLTKSK---RIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-------- 167 (182)
Q Consensus 101 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-------- 167 (182)
+.+..... .......... ..+......++|..|.+.|.+.+.+ .+++++++++|++++.++++..+.
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~ 152 (400)
T PRK06475 73 LYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE 152 (400)
T ss_pred EEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc
Confidence 00000000 0000000000 0011123468999999999999876 479999999999998755443222
Q ss_pred EEeCCEEEecCCC
Q psy2240 168 IATGDVGIAKDGS 180 (182)
Q Consensus 168 v~~~~~vi~adG~ 180 (182)
....|+||+|||.
T Consensus 153 ~~~adlvIgADG~ 165 (400)
T PRK06475 153 TVSAAYLIACDGV 165 (400)
T ss_pred EEecCEEEECCCc
Confidence 2346999999997
No 48
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.65 E-value=4.1e-16 Score=115.79 Aligned_cols=145 Identities=18% Similarity=0.127 Sum_probs=84.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC--CCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV--GGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~--~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+||+||||||+|+++|+.|++ .|++|+|+||.+.. .+... ++.+.+. .+.+.++.++..... .....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~-a~~l~~~~~~~l~~lGl~~~l~~~-~~~~~ 73 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL------AGIDSVVLERRSREYVEGRIR-AGVLEQGTVDLLREAGVGERMDRE-GLVHD 73 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh------cCCCEEEEEcCCccccccccc-eeEECHhHHHHHHHcCChHHHHhc-CCccC
Confidence 4799999999999999999999 89999999999753 11111 2223332 233334444332110 00000
Q ss_pred hhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE-cCCCcEEE-------
Q psy2240 98 EDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKG------- 167 (182)
Q Consensus 98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~g~~~~------- 167 (182)
. +.+.... ...++... . .......+++..+.+.|.+.+.+.|+++++++++++++. ++++..+.
T Consensus 74 ~--~~~~~~g~~~~~~~~~~---~-~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~ 147 (392)
T PRK08243 74 G--IELRFDGRRHRIDLTEL---T-GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEE 147 (392)
T ss_pred c--EEEEECCEEEEeccccc---c-CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeE
Confidence 0 0000000 01111110 0 011123456778888898888888999999999999875 33332222
Q ss_pred -EEeCCEEEecCCC
Q psy2240 168 -IATGDVGIAKDGS 180 (182)
Q Consensus 168 -v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 148 ~~i~ad~vVgADG~ 161 (392)
T PRK08243 148 HRLDCDFIAGCDGF 161 (392)
T ss_pred EEEEeCEEEECCCC
Confidence 2345899999997
No 49
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.65 E-value=3.1e-15 Score=109.55 Aligned_cols=150 Identities=28% Similarity=0.430 Sum_probs=85.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh-----------HHhhhhhhHHhc---
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI-----------ALNELLPDWKDL--- 88 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~-----------~~~~~~~~~~~~--- 88 (182)
||+|||||++|+++|++|++ +|.+|+|||+....++.+. +.+.+.+. .....+..|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~------~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR------RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEE 74 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH------TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHH------CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhh
Confidence 79999999999999999999 8999999999955444442 22222111 111222233322
Q ss_pred -CCCCC--c--c---c-hhhhHHHH------HhhccCC------------CCCCCC---CCCCCCCccccchHHHHHHHH
Q psy2240 89 -GAPLN--T--P---V-HEDKFAYL------TKSKRIG------------IPILPG---MPMNNHGNYVVRLGHVVKWLG 138 (182)
Q Consensus 89 -~~~~~--~--~---~-~~~~~~~~------~~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~l~~~l~ 138 (182)
..... . . . .......+ ....... .+.... ...+.+....+++..+.+.|.
T Consensus 75 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~ 154 (358)
T PF01266_consen 75 YGIPVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALA 154 (358)
T ss_dssp TTSSCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHH
T ss_pred cCcccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhH
Confidence 21111 0 0 0 11111110 0111111 111110 011234466789999999999
Q ss_pred HHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCCC
Q psy2240 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS 180 (182)
Q Consensus 139 ~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG~ 180 (182)
+.+++.|++|+.+++|++|..++ +.+.+|.+ .+.||.|.|.
T Consensus 155 ~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 155 AEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGEIRADRVVLAAGA 201 (358)
T ss_dssp HHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEEEEECEEEE--GG
T ss_pred HHHHHhhhhccccccccchhhcc-cccccccccccccccceeEecccc
Confidence 99999999999999999998744 44544433 3566666654
No 50
>PLN02985 squalene monooxygenase
Probab=99.64 E-value=3.1e-15 Score=113.99 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=84.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+..+||+|||||++|+++|+.|++ .|++|+|+||.+..... ..+..+.+. ...+.++.|...........
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~------~G~~V~vlEr~~~~~~~-~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~- 112 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK------DGRRVHVIERDLREPER-MMGEFMQPGGRFMLSKLGLEDCLEGIDAQKA- 112 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH------cCCeEEEEECcCCCCcc-ccccccCchHHHHHHHcCCcchhhhccCccc-
Confidence 456899999999999999999999 89999999998643221 122223222 22333444332211100011
Q ss_pred hhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEE-----
Q psy2240 98 EDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIA----- 169 (182)
Q Consensus 98 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~----- 169 (182)
..+..+.... ...++...........++.+++..+.+.|.+++.+. +++++++ +++++..+ ++.+.+|.
T Consensus 113 -~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~d 189 (514)
T PLN02985 113 -TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSA 189 (514)
T ss_pred -ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCC
Confidence 0000100000 011111000001112246788999999999999775 6888865 57776543 34333322
Q ss_pred ------eCCEEEecCCC
Q psy2240 170 ------TGDVGIAKDGS 180 (182)
Q Consensus 170 ------~~~~vi~adG~ 180 (182)
..++||+|||.
T Consensus 190 G~~~~~~AdLVVgADG~ 206 (514)
T PLN02985 190 GEETTALAPLTVVCDGC 206 (514)
T ss_pred CCEEEEECCEEEECCCC
Confidence 35899999997
No 51
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.64 E-value=1.7e-15 Score=113.84 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=85.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc-----------cccccccCh--hHHhhhhhhHHhcC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-----------ILSGAVIDP--IALNELLPDWKDLG 89 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~-----------~~~~~~~~~--~~~~~~~~~~~~~~ 89 (182)
+||+||||||+|+++|+.|++. +...|++|+|||+.+.+... ...+-.+.+ ..+.+.++.|....
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~--~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNN--PLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcC--cccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhh
Confidence 6999999999999999999861 11138999999995422211 001112222 23334445554432
Q ss_pred CCCCccchhhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC---cEEecCCccceeEEc----
Q psy2240 90 APLNTPVHEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH---- 160 (182)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g---v~i~~~~~v~~i~~~---- 160 (182)
......... +.++.... ...++.. ......++.+++..+.+.|.+.+.+.+ ++++++++|++++.+
T Consensus 79 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~ 153 (437)
T TIGR01989 79 SDRIQPFGR--MQVWDGCSLALIRFDRD---NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYP 153 (437)
T ss_pred hhcCCceee--EEEecCCCCceEEeecC---CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccc
Confidence 111111100 00000000 0111110 001122567899999999999988764 899999999999742
Q ss_pred ---CCCcEEE-----EEeCCEEEecCCC
Q psy2240 161 ---GDGSVKG-----IATGDVGIAKDGS 180 (182)
Q Consensus 161 ---~~g~~~~-----v~~~~~vi~adG~ 180 (182)
+++..+. ....++||+|||+
T Consensus 154 ~~~~~~v~v~~~~g~~i~a~llVgADG~ 181 (437)
T TIGR01989 154 NDNSNWVHITLSDGQVLYTKLLIGADGS 181 (437)
T ss_pred cCCCCceEEEEcCCCEEEeeEEEEecCC
Confidence 1222221 2346999999997
No 52
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=4.3e-14 Score=107.96 Aligned_cols=143 Identities=22% Similarity=0.329 Sum_probs=82.4
Q ss_pred ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-h-hH----------Hhhhhh
Q psy2240 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-P-IA----------LNELLP 83 (182)
Q Consensus 17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-~-~~----------~~~~~~ 83 (182)
..++.++||||||+|++|+++|+.+++ .|.+|+||||.+..+|.+. +.+.+. . .. ..+.+.
T Consensus 56 ~~~~~~~DVvVVG~G~AGl~AAi~Aa~------~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~ 129 (506)
T PRK06481 56 SELKDKYDIVIVGAGGAGMSAAIEAKD------AGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYE 129 (506)
T ss_pred ccccccCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHH
Confidence 344567899999999999999999999 8999999999998877542 222221 1 11 112222
Q ss_pred hHHhcCCCCCcc--------chhhhHHHHHhhccCCCCCCC---CC--C-CCCCCccccchHHHHHHHHHHHHHcCcEEe
Q psy2240 84 DWKDLGAPLNTP--------VHEDKFAYLTKSKRIGIPILP---GM--P-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIY 149 (182)
Q Consensus 84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 149 (182)
++........+. ...+.+.|+...+ ..+.... .. + ...+.........+...|.+.+++.|++++
T Consensus 130 ~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~ 208 (506)
T PRK06481 130 ETLKGGGGTNDKALLRYFVDNSASAIDWLDSMG-IKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLF 208 (506)
T ss_pred HHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcC-ceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEE
Confidence 222222111111 1123345554322 1111110 00 0 000001112234678889999989999999
Q ss_pred cCCccceeEEcCCCcEEE
Q psy2240 150 PGIPASEVLYHGDGSVKG 167 (182)
Q Consensus 150 ~~~~v~~i~~~~~g~~~~ 167 (182)
++++|++|.. +++.+++
T Consensus 209 ~~t~v~~l~~-~~g~V~G 225 (506)
T PRK06481 209 VNADVTKITE-KDGKVTG 225 (506)
T ss_pred eCCeeEEEEe-cCCEEEE
Confidence 9999999986 4455544
No 53
>PRK05868 hypothetical protein; Validated
Probab=99.63 E-value=2.7e-15 Score=110.56 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=82.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccCh--hHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP--IALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
||+|||||++|+++|+.|++ .|++|+|||+.+..... ..+-.+.+ ..+.+.++.+..... ....... +
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~-g~~i~~~~~a~~~L~~lGl~~~~~~-~~~~~~~--~ 72 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR------HGYSVTMVERHPGLRPG-GQAIDVRGPALDVLERMGLLAAAQE-HKTRIRG--A 72 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCCCCCC-ceeeeeCchHHHHHHhcCCHHHHHh-hccCccc--e
Confidence 79999999999999999999 89999999999765421 11111222 122333343332210 0000000 0
Q ss_pred HHHHhhcc-CCCCCC--CCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240 102 AYLTKSKR-IGIPIL--PGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV 173 (182)
Q Consensus 102 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~ 173 (182)
.+...... +..... ............++|..|.+.|.+.+ ..|++++++++|++++.++++..+. ....|+
T Consensus 73 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 73 SFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 00000000 000000 00001111234677888888876654 4589999999999998654443332 234699
Q ss_pred EEecCCC
Q psy2240 174 GIAKDGS 180 (182)
Q Consensus 174 vi~adG~ 180 (182)
||+|||.
T Consensus 152 vIgADG~ 158 (372)
T PRK05868 152 VIGADGL 158 (372)
T ss_pred EEECCCC
Confidence 9999996
No 54
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.63 E-value=1.3e-14 Score=113.24 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=88.7
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcC---CCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLG---APL 92 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~---~~~ 92 (182)
|..++||+||||||+||++|+.|++ . |++|+|||+.+..... ..+..+.+.. +.+.++.+.... ...
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar------~~Gi~v~IiE~~~~~~~~-grA~gl~prtleiL~~lGl~d~l~~~g~~~ 101 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSA------FPDITTRIVERKPGRLEL-GQADGIACRTMEMFQAFGFAERILKEAYWI 101 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhc------CCCCcEEEEEcCCCCCCC-CeeeEEChHHHHHHHhccchHHHHhhcccc
Confidence 4457899999999999999999999 6 9999999998754321 1222334433 334444444321 111
Q ss_pred Cc-cchhhh---HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC--cEEecCCccceeEEcCCC---
Q psy2240 93 NT-PVHEDK---FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDG--- 163 (182)
Q Consensus 93 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g--v~i~~~~~v~~i~~~~~g--- 163 (182)
.. .+.... ...+..... ...... .........+++..+++.|.+.+.+.+ +.+++++++++++.++++
T Consensus 102 ~~~~~~~~~~~~~~~i~r~~~--~~~~~~-~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~ 178 (634)
T PRK08294 102 NETAFWKPDPADPSTIVRTGR--VQDTED-GLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP 178 (634)
T ss_pred cceEEEcCCCccccceecccc--ccccCC-CCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC
Confidence 10 000000 000000000 000000 011112357889999999999998766 578899999999875432
Q ss_pred cEEE-------------EEeCCEEEecCCC
Q psy2240 164 SVKG-------------IATGDVGIAKDGS 180 (182)
Q Consensus 164 ~~~~-------------v~~~~~vi~adG~ 180 (182)
..+. ...+++||+|||+
T Consensus 179 V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa 208 (634)
T PRK08294 179 VTVTLRRTDGEHEGEEETVRAKYVVGCDGA 208 (634)
T ss_pred EEEEEEECCCCCCCceEEEEeCEEEECCCC
Confidence 2221 3346999999997
No 55
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.62 E-value=2.4e-14 Score=106.91 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=87.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCC-Cc-eEEEEecCCCCCCccc-cccccC--------hhHHhhhhhhHHhc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGK-EL-KVCLVEKAAEVGGHIL-SGAVID--------PIALNELLPDWKDL 88 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~-~v~vlE~~~~~~g~~~-~~~~~~--------~~~~~~~~~~~~~~ 88 (182)
...+||+|||||++|+++|++|++ + |. +|+||||.....+.+. +.+.+. ..........|...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~------~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l 101 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAK------EHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGL 101 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHH------hcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHH
Confidence 356899999999999999999998 5 84 9999999875544432 222211 11111222333322
Q ss_pred ----CCCC--C--ccc----hhhhHHHH----H--hhccCCCCCCC------CCC---------------CCCCCccccc
Q psy2240 89 ----GAPL--N--TPV----HEDKFAYL----T--KSKRIGIPILP------GMP---------------MNNHGNYVVR 129 (182)
Q Consensus 89 ----~~~~--~--~~~----~~~~~~~~----~--~~~~~~~~~~~------~~~---------------~~~~~~~~~~ 129 (182)
+... . ..+ .......+ . .....+...+. ..| .+.+....++
T Consensus 102 ~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~ 181 (407)
T TIGR01373 102 SQDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR 181 (407)
T ss_pred HHHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence 1110 0 000 11111111 0 11111111110 011 1122234667
Q ss_pred hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS 180 (182)
Q Consensus 130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~ 180 (182)
+..+...|.+.+++.|++++++++|++++..+++.+.++ .++++||+|+|.
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~ 239 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence 888888999999999999999999999976444544433 344678888875
No 56
>PRK06753 hypothetical protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=109.93 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=83.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccchhhhH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
||+||||||+|+++|+.|++ .|++|+|+||.+.+... ..+-.+.+..+ .+.++.+...... .... ..+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~-g~gi~l~~~~~~~L~~~gl~~~~~~~-~~~~--~~~ 71 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE------QGHEVKVFEKNESVKEV-GAGIGIGDNVIKKLGNHDLAKGIKNA-GQIL--STM 71 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccccc-ccceeeChHHHHHHHhcChHHHHHhc-CCcc--cce
Confidence 79999999999999999999 89999999999865421 12222333322 2222222221100 0000 000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA 176 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~ 176 (182)
..+...+.. +.... . ......+.++|..|.+.|.+.+. +.+|+++++|++++.++++..+. ....++||+
T Consensus 72 ~~~~~~g~~-~~~~~-~-~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vig 146 (373)
T PRK06753 72 NLLDDKGTL-LNKVK-L-KSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIG 146 (373)
T ss_pred eEEcCCCCE-Eeecc-c-ccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEE
Confidence 011111100 00000 0 01123567899999999998875 46899999999998755443321 345699999
Q ss_pred cCCC
Q psy2240 177 KDGS 180 (182)
Q Consensus 177 adG~ 180 (182)
|||.
T Consensus 147 adG~ 150 (373)
T PRK06753 147 ADGI 150 (373)
T ss_pred CCCc
Confidence 9995
No 57
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.62 E-value=2.7e-15 Score=111.58 Aligned_cols=151 Identities=25% Similarity=0.231 Sum_probs=85.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCC---CceEEEEecCCCCC----CccccccccChh--HHhhhhhhHHhcCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK---ELKVCLVEKAAEVG----GHILSGAVIDPI--ALNELLPDWKDLGAP 91 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~---g~~v~vlE~~~~~~----g~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (182)
+.+||+||||||+|+++|+.|++ . |++|+||||..... +....+..+.+. ...+.++.|......
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~------~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 75 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR------LSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADC 75 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh------cccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence 45899999999999999999999 7 99999999963221 100112223222 233334444432110
Q ss_pred CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---
Q psy2240 92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG--- 167 (182)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~--- 167 (182)
........+..........+.. .... .....+.+++..+.+.|.+.+.+ .|++++++++|+++..++++..+.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~ 152 (395)
T PRK05732 76 -ATPITHIHVSDRGHAGFVRLDA-EDYG-VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDD 152 (395)
T ss_pred -cCCccEEEEecCCCCceEEeeh-hhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECC
Confidence 0000000000000000000000 0000 11114567888899999998866 579999999999997655443332
Q ss_pred --EEeCCEEEecCCC
Q psy2240 168 --IATGDVGIAKDGS 180 (182)
Q Consensus 168 --v~~~~~vi~adG~ 180 (182)
....++||+|||.
T Consensus 153 g~~~~a~~vI~AdG~ 167 (395)
T PRK05732 153 GETLTGRLLVAADGS 167 (395)
T ss_pred CCEEEeCEEEEecCC
Confidence 2456899999996
No 58
>PRK07121 hypothetical protein; Validated
Probab=99.61 E-value=1.8e-14 Score=109.86 Aligned_cols=45 Identities=42% Similarity=0.598 Sum_probs=39.7
Q ss_pred cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.++.++||||||+|.+|+++|+++++ .|.+|+||||.+..+|.+.
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae------~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAA------AGARVLVLERAAGAGGATA 60 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCccc
Confidence 34567999999999999999999999 8999999999988777553
No 59
>PRK07236 hypothetical protein; Provisional
Probab=99.61 E-value=7.7e-15 Score=108.79 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=78.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 97 (182)
++..+|+|||||++|+++|+.|++ .|++|+|+||.+........+-.+.+..+ .+.++.+... .......
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~~~~~ 75 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR------AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA--DIGVPSR 75 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc--ccccCcc
Confidence 345799999999999999999999 89999999998743211111112333222 1222221111 0000000
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCC
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGD 172 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~ 172 (182)
...++..... .+...+. ....+.+..+.+.|.+.+ .++.++++++|++++.++++..+. ....+
T Consensus 76 --~~~~~~~~g~----~~~~~~~---~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 144 (386)
T PRK07236 76 --ERIYLDRDGR----VVQRRPM---PQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETAD 144 (386)
T ss_pred --ceEEEeCCCC----EeeccCC---CccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeC
Confidence 0000000000 0000000 112235566777776654 357899999999998755543332 33569
Q ss_pred EEEecCCC
Q psy2240 173 VGIAKDGS 180 (182)
Q Consensus 173 ~vi~adG~ 180 (182)
+||+|||.
T Consensus 145 ~vIgADG~ 152 (386)
T PRK07236 145 LLVGADGG 152 (386)
T ss_pred EEEECCCC
Confidence 99999996
No 60
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.60 E-value=9.8e-16 Score=114.69 Aligned_cols=137 Identities=31% Similarity=0.338 Sum_probs=37.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
||||||||++|+++|+.+++ .|.+|+|||+.+.+||....++........ ... .........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr------~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~----~~~--------~~~~gi~~e 62 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR------AGAKVLLIEKGGFLGGMATSGGVSPFDGNH----DED--------QVIGGIFRE 62 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH------TTS-EEEE-SSSSSTGGGGGSSS-EETTEE----HHH--------HHHHHHHHH
T ss_pred CEEEECccHHHHHHHHHHHH------CCCEEEEEECCccCCCcceECCcCChhhcc----hhh--------ccCCCHHHH
Confidence 89999999999999999999 899999999999999876655432111100 000 000000001
Q ss_pred HHhhccCCCCCCC-CCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------CC
Q psy2240 104 LTKSKRIGIPILP-GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT----------GD 172 (182)
Q Consensus 104 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~----------~~ 172 (182)
+...... ..... ...........+++..+...|.+.+.+.|+++++++.|.++.. +++++.+|.. ++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~ 140 (428)
T PF12831_consen 63 FLNRLRA-RGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAK 140 (428)
T ss_dssp HHHST---------------------------------------------------------------------------
T ss_pred HHHHHhh-hcccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 1000000 00000 0000000024566777888888888888999999999999987 4456665443 47
Q ss_pred EEEecCCC
Q psy2240 173 VGIAKDGS 180 (182)
Q Consensus 173 ~vi~adG~ 180 (182)
++|.|.|.
T Consensus 141 ~~IDaTG~ 148 (428)
T PF12831_consen 141 VFIDATGD 148 (428)
T ss_dssp --------
T ss_pred cccccccc
Confidence 89999885
No 61
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.60 E-value=7.7e-14 Score=105.12 Aligned_cols=136 Identities=25% Similarity=0.383 Sum_probs=79.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccc-cccccC---hh---------HHhhhhhhHHhcC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHIL-SGAVID---PI---------ALNELLPDWKDLG 89 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~-~~~~~~---~~---------~~~~~~~~~~~~~ 89 (182)
||||||+|++|+++|+.+++ +| .+|+||||.+..+|.+. +++.+. .. .....+..+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~------~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK------AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999 89 99999999988776653 232221 10 1111222222211
Q ss_pred CCCCcc--------chhhhHHHHHhhccCCCCC--C--CC---CCC-CCCCccccchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240 90 APLNTP--------VHEDKFAYLTKSKRIGIPI--L--PG---MPM-NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP 153 (182)
Q Consensus 90 ~~~~~~--------~~~~~~~~~~~~~~~~~~~--~--~~---~~~-~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~ 153 (182)
....+. .....+.|+. ....+.. . .. .+. ..+.........+.+.|.+.+++.|++|+++++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~ 152 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQ--DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSK 152 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHH--hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCE
Confidence 111111 0123344554 1111111 0 00 000 000011234467889999999999999999999
Q ss_pred cceeEEcCCCcEEE
Q psy2240 154 ASEVLYHGDGSVKG 167 (182)
Q Consensus 154 v~~i~~~~~g~~~~ 167 (182)
|+++..++++.+++
T Consensus 153 v~~l~~~~~g~v~G 166 (439)
T TIGR01813 153 VEDLIQDDQGTVVG 166 (439)
T ss_pred eeEeEECCCCcEEE
Confidence 99998866665554
No 62
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.60 E-value=4e-14 Score=108.97 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=86.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh-------h--HHh---hhhhhHHh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP-------I--ALN---ELLPDWKD 87 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~-------~--~~~---~~~~~~~~ 87 (182)
.++||+|||||++|+++|+.|++ +|++|+||||.....|.+. +.+.+.. . ... +....|..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~------rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~ 78 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL------RGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKR 78 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH------cCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999 8999999999865555443 2222111 0 000 00011111
Q ss_pred cCCC-------CCccchhhhHHH------HHhhccCCCCC------------CCC---CCCCCCCccccchHHHHHHHHH
Q psy2240 88 LGAP-------LNTPVHEDKFAY------LTKSKRIGIPI------------LPG---MPMNNHGNYVVRLGHVVKWLGE 139 (182)
Q Consensus 88 ~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~l~~~l~~ 139 (182)
.... +..........+ .......+... +.. ...+.+ ...+++..+...+..
T Consensus 79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~ 157 (546)
T PRK11101 79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANML 157 (546)
T ss_pred hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHH
Confidence 1000 000011111111 11111111111 100 001112 247899999999999
Q ss_pred HHHHcCcEEecCCccceeEEcCCCcEEEE------------EeCCEEEecCCC
Q psy2240 140 QAEAMGVEIYPGIPASEVLYHGDGSVKGI------------ATGDVGIAKDGS 180 (182)
Q Consensus 140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------------~~~~~vi~adG~ 180 (182)
.++++|++++++++|+++..++ +.+.++ +.++.||.|.|.
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~ 209 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGI 209 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCCh
Confidence 9999999999999999998743 444332 345778888775
No 63
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.60 E-value=5.7e-14 Score=108.83 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=84.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-------ChhHHhhhhhhHHhcCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-------DPIALNELLPDWKDLGAPL 92 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~ 92 (182)
.++||+|||+|.+|+++|+.+++ .|.+|+||||....++.+. +.+.+ ........+.+....+..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ------SGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 46899999999999999999999 8999999999976655432 22222 1122222333333333222
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCCCCCC--CCCCccc----------------cchHHHHHHHHHHHHHcCc
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILPGMPM--NNHGNYV----------------VRLGHVVKWLGEQAEAMGV 146 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------~~~~~l~~~l~~~~~~~gv 146 (182)
.++. ..+.+.|+.. ....+....+... ...++.. -....+...|.+.+.+.++
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELEH-MGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 2221 2244555543 2222221111000 0000100 1245688889888888899
Q ss_pred EEecCCccceeEEcCCCcEEEEE
Q psy2240 147 EIYPGIPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 147 ~i~~~~~v~~i~~~~~g~~~~v~ 169 (182)
++++++.++++..+++++++|+.
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~ 181 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCT 181 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEE
Confidence 99999999999876567777643
No 64
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.60 E-value=4.2e-14 Score=105.12 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=86.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCC-ccc-ccccc------ChhH-H----hhhhhhHH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGG-HIL-SGAVI------DPIA-L----NELLPDWK 86 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g-~~~-~~~~~------~~~~-~----~~~~~~~~ 86 (182)
.+||+|||||++|+++|++|++ + |.+|+||||.+.++. .+. +.+.+ .+.. . .+....|.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~------~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~ 75 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQE------RYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATK 75 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHH------hCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999 6 999999999865432 222 22211 1111 0 11122222
Q ss_pred h----cCCCCCc-----cc-hhhhHHHHH------hhccCCCCCC------------C-CCCCCCCCccccchHHHHHHH
Q psy2240 87 D----LGAPLNT-----PV-HEDKFAYLT------KSKRIGIPIL------------P-GMPMNNHGNYVVRLGHVVKWL 137 (182)
Q Consensus 87 ~----~~~~~~~-----~~-~~~~~~~~~------~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~~l 137 (182)
. .+..+.. .. .......+. .........+ . ....+.+....+++..+.+.|
T Consensus 76 ~~~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL 155 (393)
T PRK11728 76 AFCDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAM 155 (393)
T ss_pred HHHHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHH
Confidence 2 1111110 00 111111110 0111111110 0 011233445678899999999
Q ss_pred HHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecCCC
Q psy2240 138 GEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKDGS 180 (182)
Q Consensus 138 ~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~adG~ 180 (182)
.+.+++.|++++++++|++++.++++..+. ....+.||.|.|.
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~ 202 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGL 202 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCc
Confidence 999999999999999999997644432221 2345677777775
No 65
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.60 E-value=6.3e-14 Score=103.76 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=83.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cccc-ccccc----C----hhHHhhhhhhHHhc---
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHIL-SGAVI----D----PIALNELLPDWKDL--- 88 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~-~~~~~----~----~~~~~~~~~~~~~~--- 88 (182)
+||+|||||++|+++|++|++ +|.+|+|||+..... +.+. .++.+ . .....+.+..|...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~------~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~ 74 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK------HGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKE 74 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999 899999999976532 2121 11111 0 01111222333322
Q ss_pred -CCCCCc----c-c--h-hhh----HHHHHhhccCCC------------CCCC--C--CCCCCCCccccchHHHHHHHHH
Q psy2240 89 -GAPLNT----P-V--H-EDK----FAYLTKSKRIGI------------PILP--G--MPMNNHGNYVVRLGHVVKWLGE 139 (182)
Q Consensus 89 -~~~~~~----~-~--~-~~~----~~~~~~~~~~~~------------~~~~--~--~~~~~~~~~~~~~~~l~~~l~~ 139 (182)
+..... . + . ... ....... ..+. +.+. . ...+.+....+++..+.+.|.+
T Consensus 75 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~ 153 (380)
T TIGR01377 75 AGTKLHRQTGLLLLGPKENQFLKTIQATLSRH-GLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQE 153 (380)
T ss_pred hCCeeEeecCeEEEcCCCcHHHHHHHHHHHHc-CCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHH
Confidence 111100 0 0 0 011 1111111 1111 1110 0 0122344567899999999999
Q ss_pred HHHHcCcEEecCCccceeEEcCCCcEE-----EEEeCCEEEecCCC
Q psy2240 140 QAEAMGVEIYPGIPASEVLYHGDGSVK-----GIATGDVGIAKDGS 180 (182)
Q Consensus 140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~-----~v~~~~~vi~adG~ 180 (182)
.+++.|++++++++|++++.+++...+ .+.++.+|+++++.
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 999999999999999999864433222 13334566666653
No 66
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.60 E-value=8.9e-14 Score=106.95 Aligned_cols=142 Identities=26% Similarity=0.264 Sum_probs=84.4
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPL 92 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~ 92 (182)
++.++||+|||+|++|+++|+.+++ .|.+|+||||.+..+|.+. +.+.+. .......+.+....+...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae------~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARR------AGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL 86 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHH------cCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence 4667999999999999999999999 8999999999987665443 222211 122223333333332222
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCc------c----ccchHHHHHHHHHHHHHcCcEEecCC
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGN------Y----VVRLGHVVKWLGEQAEAMGVEIYPGI 152 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~----~~~~~~l~~~l~~~~~~~gv~i~~~~ 152 (182)
.+.. ..+.+.|+... ...+....+.. ....++ . ......+.+.|.+.+++.++++++++
T Consensus 87 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~ 165 (541)
T PRK07804 87 CDPDAVRSLVAEGPRAVRELVAL-GARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHA 165 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECe
Confidence 2211 12334455432 22222111100 000000 0 11345788999999988899999999
Q ss_pred ccceeEEcCCCcEEE
Q psy2240 153 PASEVLYHGDGSVKG 167 (182)
Q Consensus 153 ~v~~i~~~~~g~~~~ 167 (182)
.|+++..++++.+.+
T Consensus 166 ~v~~Li~~~~g~v~G 180 (541)
T PRK07804 166 LALDLLTDGTGAVAG 180 (541)
T ss_pred EeeeeEEcCCCeEEE
Confidence 999998755555554
No 67
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.59 E-value=8.9e-14 Score=102.82 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=41.8
Q ss_pred CccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240 124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKDGS 180 (182)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~adG~ 180 (182)
...++++..+...+.+.+.+.|++++++++|+++..++++..+ +....+.||.|.|.
T Consensus 142 ~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~ 202 (376)
T PRK11259 142 DGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGA 202 (376)
T ss_pred CCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCc
Confidence 3457788899999999998899999999999999874443222 12344667777765
No 68
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.59 E-value=6.9e-14 Score=108.88 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=84.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAP 91 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~ 91 (182)
+.++||+|||+|.+|+++|+.+++ .|.+|+||||.+..++.+. +.+.+. .......+.+....+..
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~ 100 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVE------LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW 100 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHH------cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999999 8999999999987665442 222221 11122222222222222
Q ss_pred CCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCccc-----------------cchHHHHHHHHHHHHHc
Q psy2240 92 LNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV-----------------VRLGHVVKWLGEQAEAM 144 (182)
Q Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------------~~~~~l~~~l~~~~~~~ 144 (182)
+.+.. ..+.+.|+... ...+....+. .....++.. -....+...|.+.+++.
T Consensus 101 ~~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~ 179 (617)
T PTZ00139 101 LGDQDAIQYMCREAPQAVLELESY-GLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY 179 (617)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc-CCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC
Confidence 22211 22445555432 2222111110 000000100 02357889999999889
Q ss_pred CcEEecCCccceeEEcCCCcEEEEE
Q psy2240 145 GVEIYPGIPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 145 gv~i~~~~~v~~i~~~~~g~~~~v~ 169 (182)
|+++++++.++++..++++.+.|+.
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~ 204 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVI 204 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEE
Confidence 9999999999998875567777643
No 69
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.59 E-value=6.1e-14 Score=105.61 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=82.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
....+|+|||||++||++|.+|.+ .|++|+|+||.+..||.+.-........+ .... . .......
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~------~G~~v~vfE~~~~vGG~W~~~~~~~~d~~----~~~~----~-~~~~~s~ 72 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR------EGHTVVVFEREKQVGGLWVYTPKSESDPL----SLDP----T-RSIVHSS 72 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh------cCCeEEEEecCCCCcceeecCCCcCCCcc----ccCC----C-Ccccchh
Confidence 345689999999999999999999 89999999999998876532111100000 0000 0 0000001
Q ss_pred hHHHHHhhccCCCCCCCCCCCCC-------CCccccchHHHHHHHHHHHHHcCcE--EecCCccceeEEcCCCcEEEEE-
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNN-------HGNYVVRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIA- 169 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~g~~~~v~- 169 (182)
.+..+..+.....-.+.++|... .........++.++|.+.+++.++. |+++++|+++...++.+.+.+.
T Consensus 73 ~Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~ 152 (461)
T PLN02172 73 VYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKN 152 (461)
T ss_pred hhhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEc
Confidence 11111111100000111111110 1122345678999999999999987 9999999999875444433221
Q ss_pred --------eCCEEEecCCC
Q psy2240 170 --------TGDVGIAKDGS 180 (182)
Q Consensus 170 --------~~~~vi~adG~ 180 (182)
..|.||.|.|+
T Consensus 153 ~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 153 SGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred CCCceEEEEcCEEEEeccC
Confidence 12667777774
No 70
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.59 E-value=8.6e-14 Score=107.76 Aligned_cols=45 Identities=38% Similarity=0.659 Sum_probs=40.0
Q ss_pred ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..++.++||||||+|++|+++|+.+++ .|.+|+||||.+..+|.+
T Consensus 6 ~~~~~~~DVvVVG~G~AGl~AA~~aae------~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 6 QNFDREVDVLVVGSGGGGMTAALTAAA------RGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CCccCcCCEEEECccHHHHHHHHHHHH------CCCcEEEEEcCCCCCchH
Confidence 346678999999999999999999999 899999999998877654
No 71
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.59 E-value=1.6e-14 Score=107.29 Aligned_cols=140 Identities=22% Similarity=0.323 Sum_probs=79.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
+||+||||||+|+++|+.|++ .|++|+||||...... .+++.+....+ +.++.+.... ...+. ...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~------~G~~V~llE~~~~~~~--~cg~~i~~~~l-~~~g~~~~~~---~~~i~--~~~ 66 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS------AGIQTFLLERKPDNAK--PCGGAIPLCMV-DEFALPRDII---DRRVT--KMK 66 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh------CCCcEEEEecCCCCCC--CccccccHhhH-hhccCchhHH---Hhhhc--eeE
Confidence 489999999999999999999 8999999999864332 23444433222 2222111100 00000 000
Q ss_pred HHHhhccCCCCCCCCCCCCCCC-ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC---CCcEE------------
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHG-NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVK------------ 166 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~g~~~------------ 166 (182)
.+.. ....+.. .. ...... .+.++|..|.+.|.+.+.+.|++++.++ +++++... +...+
T Consensus 67 ~~~p-~~~~~~~-~~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g 142 (398)
T TIGR02028 67 MISP-SNIAVDI-GR-TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSG 142 (398)
T ss_pred EecC-CceEEEe-cc-CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCC
Confidence 0000 0000000 00 000111 2368999999999999999999998875 66664311 11111
Q ss_pred --EEEeCCEEEecCCC
Q psy2240 167 --GIATGDVGIAKDGS 180 (182)
Q Consensus 167 --~v~~~~~vi~adG~ 180 (182)
.....++||+|||+
T Consensus 143 ~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 143 TRCTLEVDAVIGADGA 158 (398)
T ss_pred CccEEEeCEEEECCCc
Confidence 13456999999997
No 72
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.59 E-value=1.4e-13 Score=104.42 Aligned_cols=141 Identities=22% Similarity=0.293 Sum_probs=78.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC--CCCccc-cccc--cCh---------hHHhhhhhhH
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--VGGHIL-SGAV--IDP---------IALNELLPDW 85 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~--~~g~~~-~~~~--~~~---------~~~~~~~~~~ 85 (182)
+.++||||||+|++|+++|+.+++ .|.+|+||||.+. .+|.+. +++. ... ......+.++
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~------~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAARE------AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDL 75 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHH
Confidence 457899999999999999999999 8999999999974 455432 2221 000 0011222222
Q ss_pred HhcCCCCCcc--------chhhhHHHHHhhccCCCCCCCCCCCC-CCCc--cccchHHHHHHHHHHHHHcCcEEecCCcc
Q psy2240 86 KDLGAPLNTP--------VHEDKFAYLTKSKRIGIPILPGMPMN-NHGN--YVVRLGHVVKWLGEQAEAMGVEIYPGIPA 154 (182)
Q Consensus 86 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~l~~~~~~~gv~i~~~~~v 154 (182)
.......... ...+.+.|+...+ ..+......... .... ..-....+...|.+.+++.|++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~G-v~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v 154 (466)
T PRK08274 76 LRVTGGRTDEALARLLIRESSDCRDWMRKHG-VRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPV 154 (466)
T ss_pred HHhhCCCCCHHHHHHHHHcCHHHHHHHHhCC-ceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 2221111111 0112344443321 111111000000 0000 01113568888999999999999999999
Q ss_pred ceeEEcCCCcEEEE
Q psy2240 155 SEVLYHGDGSVKGI 168 (182)
Q Consensus 155 ~~i~~~~~g~~~~v 168 (182)
+++..+ ++.++++
T Consensus 155 ~~l~~~-~g~v~gv 167 (466)
T PRK08274 155 TALELD-DGRFVGA 167 (466)
T ss_pred EEEEec-CCeEEEE
Confidence 999873 4655553
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.58 E-value=1.2e-13 Score=105.54 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=38.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
|+.++||+|||||++|+++|+.|++ +|++|+||||.....|.+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~------rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAG------RGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCccc
Confidence 4557899999999999999999999 9999999999977666553
No 74
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.58 E-value=1.1e-13 Score=107.83 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=84.1
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGA 90 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~ 90 (182)
...++||+|||+|++|+++|+.+++ .|.+|+||||....++.+. +.+.+. .......+.+....+.
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae------~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~ 120 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSE------HGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSD 120 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHh------cCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhC
Confidence 3456899999999999999999999 8999999999987665442 222211 1222222233322222
Q ss_pred CCCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc-----------------ccchHHHHHHHHHHHHH
Q psy2240 91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY-----------------VVRLGHVVKWLGEQAEA 143 (182)
Q Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~l~~~l~~~~~~ 143 (182)
.+.++. .++.+.|+... ...+....+. .....++. .-....+...|.+.+.+
T Consensus 121 ~~~d~~lv~~l~~~s~~~i~~L~~~-Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~ 199 (635)
T PLN00128 121 WLGDQDAIQYMCREAPKAVIELENY-GLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK 199 (635)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHhC-CCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh
Confidence 222211 22344555432 2222211110 00000000 01245688899998888
Q ss_pred cCcEEecCCccceeEEcCCCcEEEE
Q psy2240 144 MGVEIYPGIPASEVLYHGDGSVKGI 168 (182)
Q Consensus 144 ~gv~i~~~~~v~~i~~~~~g~~~~v 168 (182)
.|++|++++.++++..++++.+.|+
T Consensus 200 ~gv~i~~~~~~~~Li~~~~g~v~Gv 224 (635)
T PLN00128 200 HNTQFFVEYFALDLIMDSDGACQGV 224 (635)
T ss_pred CCCEEEEeeEEEEEEEcCCCEEEEE
Confidence 8999999999999877546666664
No 75
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.58 E-value=2.6e-13 Score=104.64 Aligned_cols=45 Identities=38% Similarity=0.576 Sum_probs=39.9
Q ss_pred ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..++.++||||||+| +|+++|+.+++ .|.+|+||||.+..||.+.
T Consensus 11 ~~~d~e~DvvvvG~G-~G~~aA~~a~~------~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 11 PVRDTTVDLLVVGSG-TGMAAALAAHE------LGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCCceeCEEEECCc-HHHHHHHHHHH------CCCcEEEEecCCCCcCccc
Confidence 345678999999999 89999999999 8999999999988888664
No 76
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.58 E-value=8.4e-14 Score=106.37 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=87.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc-ccccCh----------hHHhhhhhhHH-
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-GAVIDP----------IALNELLPDWK- 86 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~-~~~~~~----------~~~~~~~~~~~- 86 (182)
|..++||+|||||++|+++|+.|++ +|++|+||||....+|.+.. .+.+.. ....+.+..+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~------rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~ 76 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG------RGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREV 76 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456899999999999999999999 89999999999766665542 222211 11111111111
Q ss_pred --hcCCCCCc------cchh-h--h------HHHHHhhcc-CCCC---CCC-----C-CCC-------CCCCccccchHH
Q psy2240 87 --DLGAPLNT------PVHE-D--K------FAYLTKSKR-IGIP---ILP-----G-MPM-------NNHGNYVVRLGH 132 (182)
Q Consensus 87 --~~~~~~~~------~~~~-~--~------~~~~~~~~~-~~~~---~~~-----~-~~~-------~~~~~~~~~~~~ 132 (182)
.....+.. +... . . +..+..... ..++ .+. . .+. +.+...++++..
T Consensus 77 l~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~r 156 (502)
T PRK13369 77 LLAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDAR 156 (502)
T ss_pred HHHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHH
Confidence 11100000 0000 0 0 011111000 0000 000 0 010 111233578889
Q ss_pred HHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE---------EEeCCEEEecCCC
Q psy2240 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---------IATGDVGIAKDGS 180 (182)
Q Consensus 133 l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---------v~~~~~vi~adG~ 180 (182)
+...+...+++.|++++.+++|+++..+++.+.+. .+..+.||.|.|.
T Consensus 157 l~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~ 213 (502)
T PRK13369 157 LVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGP 213 (502)
T ss_pred HHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCc
Confidence 99999999999999999999999998744322221 1456788988885
No 77
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.57 E-value=2.5e-14 Score=106.18 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=81.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--CccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
.+||+||||||+|+++|+.|++ .|++|+||||.+... ..... +.+.+. .+.+.++.|+..... .....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~a-~~l~~~~~~~L~~lGl~~~l~~~-~~~~~ 73 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQSRDYVLGRIRA-GVLEQGTVDLLREAGVDERMDRE-GLVHE 73 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH------CCCCEEEEECCCCcccCCceeE-eeECHHHHHHHHHCCChHHHHhc-Cceec
Confidence 4699999999999999999999 899999999997521 11112 223332 334445544433210 01110
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE-cCCCcEEE--------E
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKG--------I 168 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~g~~~~--------v 168 (182)
... .........++. .... .........+..+.+.|.+.+.+.|+.++++++++.+.. ++++..+. .
T Consensus 74 ~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 74 GTE--IAFDGQRFRIDL-KALT-GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred ceE--EeeCCEEEEEec-cccC-CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 000 000000000110 0000 000011234567888899988888999999988877753 22222221 2
Q ss_pred EeCCEEEecCCC
Q psy2240 169 ATGDVGIAKDGS 180 (182)
Q Consensus 169 ~~~~~vi~adG~ 180 (182)
...++||+|||.
T Consensus 150 i~adlvIGADG~ 161 (390)
T TIGR02360 150 LDCDFIAGCDGF 161 (390)
T ss_pred EEeCEEEECCCC
Confidence 345899999996
No 78
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.57 E-value=8.7e-14 Score=105.43 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=35.3
Q ss_pred CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g 163 (182)
+....+++..+.+.|.+.+++.|++|+++++|++++.++++
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~ 210 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG 210 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC
Confidence 44567899999999999999999999999999999875443
No 79
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.56 E-value=9.9e-14 Score=104.43 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=44.7
Q ss_pred CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEEEecCCC
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVGIAKDGS 180 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~vi~adG~ 180 (182)
..+++++|..+.+.|.+.+++.|++++.+ +|+++..+++|.+.+|. ..+++|.|.|.
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred CeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 34789999999999999999999999987 58888877788776654 45999999996
No 80
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=2.5e-13 Score=105.55 Aligned_cols=142 Identities=17% Similarity=0.131 Sum_probs=81.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAPL 92 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 92 (182)
.++||+|||+|++|+++|+.+++ .|.+|+||||....++.+. +.+.+. .......+.+....+..+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~------~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~ 84 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE------AGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWL 84 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCC
Confidence 46899999999999999999999 8999999999876555432 222211 111111122222222222
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc-----------------ccchHHHHHHHHHHHHHcC
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY-----------------VVRLGHVVKWLGEQAEAMG 145 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~l~~~l~~~~~~~g 145 (182)
.+.. ..+.+.|+... ...+....+. .....++. .-....+...|.+.+++.|
T Consensus 85 ~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~g 163 (598)
T PRK09078 85 GDQDAIEYMCREAPAAVYELEHY-GVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHN 163 (598)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcC
Confidence 2211 12334454332 2222111110 00000000 0123468889999898889
Q ss_pred cEEecCCccceeEEcCCCcEEEEE
Q psy2240 146 VEIYPGIPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 146 v~i~~~~~v~~i~~~~~g~~~~v~ 169 (182)
++|++++.++++..+++++++|+.
T Consensus 164 i~i~~~~~v~~Li~~~~g~v~Gv~ 187 (598)
T PRK09078 164 AEFFIEYFALDLIMDDGGVCRGVV 187 (598)
T ss_pred CEEEEeEEEEEEEEcCCCEEEEEE
Confidence 999999999999875556677653
No 81
>PRK12839 hypothetical protein; Provisional
Probab=99.55 E-value=3.6e-13 Score=104.10 Aligned_cols=44 Identities=39% Similarity=0.566 Sum_probs=38.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+..++||+|||+|.+|+++|+.+++ .|.+|+||||....+|.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~------~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAY------GGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcccc
Confidence 3457899999999999999999999 8999999999988777653
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.55 E-value=1e-13 Score=103.82 Aligned_cols=138 Identities=28% Similarity=0.365 Sum_probs=80.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc---C---------hhHHhhhhhhHHhcCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI---D---------PIALNELLPDWKDLGA 90 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~---~---------~~~~~~~~~~~~~~~~ 90 (182)
||||||+|++|+++|+.+++ +|.+|+||||.+..+|.+. +++.+ . .......+.++.....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae------~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE------AGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH------TTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhh------hcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 89999999999999999999 8999999999998776442 22221 0 0122233333333322
Q ss_pred CCCcc--------chhhhHHHHHhhccCCCCCC--CC-----CCCCCCC------------ccccchHHHHHHHHHHHHH
Q psy2240 91 PLNTP--------VHEDKFAYLTKSKRIGIPIL--PG-----MPMNNHG------------NYVVRLGHVVKWLGEQAEA 143 (182)
Q Consensus 91 ~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~------------~~~~~~~~l~~~l~~~~~~ 143 (182)
...+. ...+.+.|+.... ..+... .. ....... ........+...|.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEELG-VPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHTT---B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccceehhhhhhc-ccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 22111 1123445554432 112110 00 0000000 1112456789999999999
Q ss_pred cCcEEecCCccceeEEcCCCcEEEEE
Q psy2240 144 MGVEIYPGIPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 144 ~gv~i~~~~~v~~i~~~~~g~~~~v~ 169 (182)
.|++|+++++++++..+ +++++++.
T Consensus 154 ~gv~i~~~~~~~~Li~e-~g~V~Gv~ 178 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITE-DGRVTGVV 178 (417)
T ss_dssp TTEEEEESEEEEEEEEE-TTEEEEEE
T ss_pred cCeeeeccceeeeEEEe-CCceeEEE
Confidence 99999999999999884 56777643
No 83
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=5.8e-13 Score=103.40 Aligned_cols=142 Identities=20% Similarity=0.162 Sum_probs=80.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-------ChhHHhhhhhhHHhcCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-------DPIALNELLPDWKDLGAP 91 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~ 91 (182)
..++||+|||+|.+|+++|+.+++ .|.+|+||||....++.+. +.+.+ ........+.+....+..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~ 83 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLAR------AGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDW 83 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCC
Confidence 346899999999999999999999 8999999999876555442 22211 111222222222222222
Q ss_pred CCccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCcc----------------ccchHHHHHHHHHHHHHcC
Q psy2240 92 LNTPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGNY----------------VVRLGHVVKWLGEQAEAMG 145 (182)
Q Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~l~~~l~~~~~~~g 145 (182)
+.+.. ..+.+.|+.. ....+....+ +.....++. .-....+...|.+.+.+.|
T Consensus 84 ~~d~~~v~~~~~~a~~~i~~L~~-~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~g 162 (591)
T PRK07057 84 LGDQDAIEFMCREAPNVVYELEH-FGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAK 162 (591)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-cCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcC
Confidence 22211 1223444432 1122211110 000000000 0123568888999888899
Q ss_pred cEEecCCccceeEEcCCCcEEEE
Q psy2240 146 VEIYPGIPASEVLYHGDGSVKGI 168 (182)
Q Consensus 146 v~i~~~~~v~~i~~~~~g~~~~v 168 (182)
+++++++.++++..++++.+.|+
T Consensus 163 i~i~~~~~~~~Li~~~~g~v~Gv 185 (591)
T PRK07057 163 TQFFVEWMALDLIRDADGDVLGV 185 (591)
T ss_pred CEEEeCcEEEEEEEcCCCeEEEE
Confidence 99999999999987556666654
No 84
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=4.1e-13 Score=103.81 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=81.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC---------hhHHhhhhhhHHhcCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID---------PIALNELLPDWKDLGA 90 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~---------~~~~~~~~~~~~~~~~ 90 (182)
.++||+|||+|.+|+++|+.+++ .|.+|+||||.+..++.+. +++.+. .......+.+....+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae------~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~ 77 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS------AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGD 77 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH------CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhc
Confidence 46899999999999999999999 8999999999976665442 222221 1111122222222222
Q ss_pred CCCccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcc------c---cchHHHHHHHHHHHHHcCcEEecC
Q psy2240 91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNY------V---VRLGHVVKWLGEQAEAMGVEIYPG 151 (182)
Q Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~---~~~~~l~~~l~~~~~~~gv~i~~~ 151 (182)
.+.+.. ..+.+.|+.. ....+....+.. ....++. . -....+...|.+.+++.|++++++
T Consensus 78 ~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~ 156 (566)
T PRK06452 78 YLVDQDAAELLSNKSGEIVMLLER-WGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNE 156 (566)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-CCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 222111 1233455543 222222111100 0000000 0 123568888888888889999999
Q ss_pred CccceeEEcCCCcEEEEE
Q psy2240 152 IPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 152 ~~v~~i~~~~~g~~~~v~ 169 (182)
+.++++.. ++|+++|+.
T Consensus 157 ~~~~~Li~-~~g~v~Gv~ 173 (566)
T PRK06452 157 WFSLDLVT-DNKKVVGIV 173 (566)
T ss_pred cEEEEEEE-ECCEEEEEE
Confidence 99999987 457777643
No 85
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.54 E-value=4.8e-13 Score=102.43 Aligned_cols=44 Identities=32% Similarity=0.602 Sum_probs=39.1
Q ss_pred ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..++.++||||||+| +|+++|+++++ .|.+|+||||.+..+|.+
T Consensus 2 ~~~d~~~DVvVVG~G-aGl~aA~~aa~------~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 2 SAWDEEVDVLVAGSG-GGVAGAYTAAR------EGLSVALVEATDKFGGTT 45 (513)
T ss_pred CCCCCccCEEEECch-HHHHHHHHHHH------CCCcEEEEecCCCCCcce
Confidence 345678999999999 99999999999 899999999998777765
No 86
>PRK08275 putative oxidoreductase; Provisional
Probab=99.54 E-value=3.6e-13 Score=104.03 Aligned_cols=144 Identities=24% Similarity=0.270 Sum_probs=79.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc-c-cccC------hhHHhhhhhhHHhcCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-G-AVID------PIALNELLPDWKDLGAP 91 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~-~-~~~~------~~~~~~~~~~~~~~~~~ 91 (182)
..++||+|||+|.+|+++|+.+++. +.|.+|+||||.+..++...+ + +.+. .......+.+.......
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 4568999999999999999999981 137899999999864332211 1 1111 11122222222222222
Q ss_pred CCccc--------hhhhHHHHHhhccCCCCCCCC--CCC---CCCCcc---ccchHHHHHHHHHHHHHcCcEEecCCccc
Q psy2240 92 LNTPV--------HEDKFAYLTKSKRIGIPILPG--MPM---NNHGNY---VVRLGHVVKWLGEQAEAMGVEIYPGIPAS 155 (182)
Q Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~---~~~~~~l~~~l~~~~~~~gv~i~~~~~v~ 155 (182)
+.+.. ..+.+.|+... ...+....+ +.. ...+.+ ......+.+.|.+.+++.|++|++++.|+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~ 161 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRW-GVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMAT 161 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHC-CCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEE
Confidence 22111 12334444332 122211110 000 000001 01234688899999988999999999999
Q ss_pred eeEEcCCCcEEEE
Q psy2240 156 EVLYHGDGSVKGI 168 (182)
Q Consensus 156 ~i~~~~~g~~~~v 168 (182)
+|..++++.+.|+
T Consensus 162 ~Li~~~~g~v~Gv 174 (554)
T PRK08275 162 RLLTDADGRVAGA 174 (554)
T ss_pred EEEEcCCCeEEEE
Confidence 9987545666553
No 87
>PLN02463 lycopene beta cyclase
Probab=99.54 E-value=8.1e-14 Score=104.45 Aligned_cols=136 Identities=20% Similarity=0.127 Sum_probs=79.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..+||+|||||++|+++|+.|++ .|++|+|||+.+...- ..+.+.. ...+ +.++....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~------~Gl~V~liE~~~~~~~-p~~~g~w-~~~l-~~lgl~~~------------- 84 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE------AGLSVCCIDPSPLSIW-PNNYGVW-VDEF-EALGLLDC------------- 84 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH------CCCeEEEeccCccchh-ccccchH-HHHH-HHCCcHHH-------------
Confidence 45899999999999999999999 8999999999764210 0000000 0001 00110000
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI 175 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi 175 (182)
+...........+. ............+++..|.+.|.+.+.+.|++++ ..+|++++.++++..+. ...+++||
T Consensus 85 l~~~w~~~~v~~~~-~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI 162 (447)
T PLN02463 85 LDTTWPGAVVYIDD-GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVL 162 (447)
T ss_pred HHhhCCCcEEEEeC-CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence 00000000000000 0000011124468999999999999988899987 56899998754443221 35578999
Q ss_pred ecCCC
Q psy2240 176 AKDGS 180 (182)
Q Consensus 176 ~adG~ 180 (182)
.|+|.
T Consensus 163 ~AdG~ 167 (447)
T PLN02463 163 DATGF 167 (447)
T ss_pred ECcCC
Confidence 99996
No 88
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.54 E-value=2.5e-13 Score=101.94 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC----hhHHhhhhhhHHhcCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID----PIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 95 (182)
.++||||||+|.+|+++|+.+ . .|.+|+||||.+..++.+. +.+.+. .......+.++...+....+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~------~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-R------KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-c------cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 568999999999999999997 4 5899999999987776543 222221 122233333333222221111
Q ss_pred --------chhhhHHHHHhhccCCCCCCCCCCCC-CCCc----c-----ccchHHHHHHHHHHHHH-cCcEEecCCccce
Q psy2240 96 --------VHEDKFAYLTKSKRIGIPILPGMPMN-NHGN----Y-----VVRLGHVVKWLGEQAEA-MGVEIYPGIPASE 156 (182)
Q Consensus 96 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-----~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~ 156 (182)
...+.+.|+...+ ..+....+...+ ..+. . ......+.+.|.+.+++ .|++|++++++++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 76 EAVKILANESIENINKLIDMG-LNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 1223455554322 222111100000 0000 0 11235678888888865 5899999999999
Q ss_pred eEEcCCCcEEE
Q psy2240 157 VLYHGDGSVKG 167 (182)
Q Consensus 157 i~~~~~g~~~~ 167 (182)
|..+ ++.+++
T Consensus 155 Li~~-~~~v~G 164 (433)
T PRK06175 155 IIEN-DNTCIG 164 (433)
T ss_pred eEec-CCEEEE
Confidence 9763 455554
No 89
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.53 E-value=6.5e-13 Score=103.41 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=79.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccccccc--cC-----hhHHhhhhhhHHhcCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHILSGAV--ID-----PIALNELLPDWKDLGA 90 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~~~~~--~~-----~~~~~~~~~~~~~~~~ 90 (182)
..++||+|||+|++|+++|+.+++ . |.+|+||||.+..++...+++. .. .......+.+......
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae------~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~ 82 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKE------WAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLM 82 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHH------hCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhcc
Confidence 346899999999999999999998 6 8999999999764433222221 11 0112222222222222
Q ss_pred CCCccc--------hhhhHHHHHhhccCCCCCCCCCCCCCC--CccccchHHHHHHHHHHHHHcC-cEEecCCccceeEE
Q psy2240 91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGMPMNNH--GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLY 159 (182)
Q Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~ 159 (182)
...+.. ....+.|+... ...+....+...... ....+....+.+.|.+.+++.+ +++++++.|+++..
T Consensus 83 ~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~ 161 (608)
T PRK06854 83 GIVREDLVYDIARHVDSVVHLFEEW-GLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV 161 (608)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHHc-CCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE
Confidence 222210 12334444332 122211111111111 0112456678888888888765 99999999999976
Q ss_pred cCCCcEEEE
Q psy2240 160 HGDGSVKGI 168 (182)
Q Consensus 160 ~~~g~~~~v 168 (182)
+ ++.++|+
T Consensus 162 ~-~g~v~Gv 169 (608)
T PRK06854 162 D-DNRIAGA 169 (608)
T ss_pred e-CCEEEEE
Confidence 3 3555543
No 90
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.53 E-value=3.4e-13 Score=103.27 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=80.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCcccc--ccccChhHHhhhhhhHHhcCCCCCccc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILS--GAVIDPIALNELLPDWKDLGAPLNTPV 96 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (182)
+..+||+|||||++|+.+|+.+++ .|.+|+|||+.. ..|....+ -+.+....+.+.++ ..+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR------~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEid---alG------- 65 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAAR------MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREID---ALG------- 65 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHH------cCCcEEEEecccccccccCCccccccchhhHHHHHHH---hcC-------
Confidence 346999999999999999999999 899999999985 33322111 11111111111111 111
Q ss_pred hhhhHHHHHhhccCCCCCCCC--CCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEEe---
Q psy2240 97 HEDKFAYLTKSKRIGIPILPG--MPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIAT--- 170 (182)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~~--- 170 (182)
..+..........+..+.. .+........+++..+...|.+.+++. +++++ +..|+++.. +++.+.+|.+
T Consensus 66 --g~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG 141 (618)
T PRK05192 66 --GEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDG 141 (618)
T ss_pred --CHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCC
Confidence 0011111111111111110 111111234788889999999988765 78875 567888876 4455665543
Q ss_pred ----CCEEEecCCC
Q psy2240 171 ----GDVGIAKDGS 180 (182)
Q Consensus 171 ----~~~vi~adG~ 180 (182)
++.||.|+|.
T Consensus 142 ~~I~Ak~VIlATGT 155 (618)
T PRK05192 142 LEFRAKAVVLTTGT 155 (618)
T ss_pred CEEECCEEEEeeCc
Confidence 4778888884
No 91
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.53 E-value=6.6e-14 Score=104.75 Aligned_cols=145 Identities=21% Similarity=0.171 Sum_probs=79.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccccccccChhHH--hhhhhhHH---hcCCCCCccch
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWK---DLGAPLNTPVH 97 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~ 97 (182)
+|+|||||++||++|+.|++ .| ++|+|+||.+.... ...+-.+.+..+ .+.++... ...........
T Consensus 2 ~V~IiGgGiaGla~A~~L~~------~g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 74 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK------HSHLNVQLFEAAPAFGE-VGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQ 74 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh------cCCCCEEEEecCCcCCC-CccceeeCccHHHHHHHcCChhHHHHHhcCCCccCc
Confidence 59999999999999999999 77 69999999976542 112222333222 12222111 11100000000
Q ss_pred hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCC
Q psy2240 98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGD 172 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~ 172 (182)
.. ++...................+...++|..|.+.|.+.+. +..++++++|++++.+++++.+. ....+
T Consensus 75 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad 149 (414)
T TIGR03219 75 --DI-WFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCD 149 (414)
T ss_pred --ce-eEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEee
Confidence 00 0000000000000000000111346889999999988774 35688999999998765554332 23469
Q ss_pred EEEecCCC
Q psy2240 173 VGIAKDGS 180 (182)
Q Consensus 173 ~vi~adG~ 180 (182)
+||+|||.
T Consensus 150 ~vVgADG~ 157 (414)
T TIGR03219 150 LLIGADGI 157 (414)
T ss_pred EEEECCCc
Confidence 99999996
No 92
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.53 E-value=4.2e-13 Score=100.34 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=32.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
+||+|||||++|+++|++|++ .|.+|+||||++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~------~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ------RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCC
Confidence 599999999999999999999 89999999999743
No 93
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.53 E-value=4.5e-13 Score=103.97 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=81.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC--------hhHHhhhhhhHHhcCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID--------PIALNELLPDWKDLGAP 91 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~--------~~~~~~~~~~~~~~~~~ 91 (182)
..+||+|||+|++|+++|+.+++ .|.+|+||||.+..++.+. +++.+. .......+.+....+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~ 75 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAE------AGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDF 75 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHH------cCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCC
Confidence 35699999999999999999999 8999999999987665443 222211 11222333333333322
Q ss_pred CCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc---------ccchHHHHHHHHHHHHHcC----cEE
Q psy2240 92 LNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY---------VVRLGHVVKWLGEQAEAMG----VEI 148 (182)
Q Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~l~~~~~~~g----v~i 148 (182)
+.+.. .++.+.|+... ...+....+. .....++. ......+...|.+.+++.+ +++
T Consensus 76 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i 154 (589)
T PRK08641 76 LANQPPVKAMCEAAPGIIHLLDRM-GVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEE
Confidence 22211 12334555332 2222111110 00000011 1134568888888776543 789
Q ss_pred ecCCccceeEEcCCCcEEEEE
Q psy2240 149 YPGIPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 149 ~~~~~v~~i~~~~~g~~~~v~ 169 (182)
++++.++++..+++++++|+.
T Consensus 155 ~~~~~~~~Li~~~~g~v~Gv~ 175 (589)
T PRK08641 155 YEGWEFLGAVLDDEGVCRGIV 175 (589)
T ss_pred EeeEEEEEEEECCCCEEEEEE
Confidence 999999998876567777654
No 94
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.53 E-value=4.2e-13 Score=103.32 Aligned_cols=154 Identities=23% Similarity=0.233 Sum_probs=88.3
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPL 92 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~ 92 (182)
...++||+|||+|.+|+++|+.++ .|.+|+||||.+..++.+. +.+.+. .......+.++...+...
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-------~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~ 78 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-------SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGL 78 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-------cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCC
Confidence 356789999999999999999985 4889999999987776542 322221 122233333333333222
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCCC-CCCCCCC------cccc---chHHHHHHHHHHHHH-cCcEEecCCc
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILPG-MPMNNHG------NYVV---RLGHVVKWLGEQAEA-MGVEIYPGIP 153 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~---~~~~l~~~l~~~~~~-~gv~i~~~~~ 153 (182)
.+.. ..+.+.|+...+ ..+..... ......+ .... ....+...|.+.+++ .|++|++++.
T Consensus 79 ~d~~lv~~~~~~s~~~i~wL~~~G-v~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~ 157 (553)
T PRK07395 79 CDPEAVRFLVEQAPEAIASLVEMG-VAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQAL 157 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcC-CeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcC
Confidence 2211 123445554321 22211100 0000000 0011 235688888888865 4899999999
Q ss_pred cceeEEcC-CCcEEEEE-----------eCCEEEecCCC
Q psy2240 154 ASEVLYHG-DGSVKGIA-----------TGDVGIAKDGS 180 (182)
Q Consensus 154 v~~i~~~~-~g~~~~v~-----------~~~~vi~adG~ 180 (182)
++++..++ ++.++|+. ++.+|++++|.
T Consensus 158 v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 158 ALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 99998754 36666642 33566777764
No 95
>PLN02697 lycopene epsilon cyclase
Probab=99.52 E-value=3e-13 Score=103.02 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=79.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..+||+||||||+|+++|+.|++ .|++|+|||+....... .+.. ...+ +.++... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak------~Gl~V~LIe~~~p~~~n---~GvW-~~~l-~~lgl~~-------------~ 162 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK------LGLNVGLIGPDLPFTNN---YGVW-EDEF-KDLGLED-------------C 162 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEecCcccCCCc---cccc-hhHH-HhcCcHH-------------H
Confidence 45899999999999999999999 89999999986433211 1110 0011 1011000 0
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE------EEEeCCEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK------GIATGDVG 174 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~------~v~~~~~v 174 (182)
+...........+.... .........+++..|.+.|.+.+.+.|+++ .+++|+++..++++..+ ....+++|
T Consensus 163 i~~~w~~~~v~~~~~~~-~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lV 240 (529)
T PLN02697 163 IEHVWRDTIVYLDDDKP-IMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLA 240 (529)
T ss_pred HHhhcCCcEEEecCCce-eeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEE
Confidence 00000000000000000 001111336899999999999998889998 57799999865554321 13567999
Q ss_pred EecCCC
Q psy2240 175 IAKDGS 180 (182)
Q Consensus 175 i~adG~ 180 (182)
|+|+|+
T Consensus 241 I~AdG~ 246 (529)
T PLN02697 241 TVASGA 246 (529)
T ss_pred EECCCc
Confidence 999997
No 96
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=6e-13 Score=102.61 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=79.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccc-ccccc-----ChhHHhhhhhhHHhcCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHIL-SGAVI-----DPIALNELLPDWKDLGAPL 92 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~ 92 (182)
..++||+|||+|.+|+++|+.+ + .|.+|+||||.+. .+|.+. +.+.+ ........+.++...+...
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~------~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~ 77 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-E------RGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYL 77 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-h------cCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 3568999999999999999999 8 7999999999864 344332 22222 1122223333332222222
Q ss_pred Ccc--------chhhhHHHHHhhccCCCCCCCC--CCCCCCCccc---------cchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240 93 NTP--------VHEDKFAYLTKSKRIGIPILPG--MPMNNHGNYV---------VRLGHVVKWLGEQAEAMGVEIYPGIP 153 (182)
Q Consensus 93 ~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~l~~~l~~~~~~~gv~i~~~~~ 153 (182)
.+. .....+.|+... ...+....+ +.....++.. .....+...|.+.+++.|++|++++.
T Consensus 78 ~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~ 156 (543)
T PRK06263 78 NDPKLVEILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVM 156 (543)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeE
Confidence 111 122334454332 122211000 0000001110 12356888888888888999999999
Q ss_pred cceeEEcCCCcEEEE
Q psy2240 154 ASEVLYHGDGSVKGI 168 (182)
Q Consensus 154 v~~i~~~~~g~~~~v 168 (182)
++++..++++.++|+
T Consensus 157 v~~Li~~~~~~v~Gv 171 (543)
T PRK06263 157 AIKLIVDENREVIGA 171 (543)
T ss_pred eeeeEEeCCcEEEEE
Confidence 999987554445553
No 97
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.52 E-value=7.2e-13 Score=100.97 Aligned_cols=137 Identities=22% Similarity=0.291 Sum_probs=79.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 95 (182)
++||+|||+|++|+++|+.+++ .|. |+||||.+..++.+. +.+.+. .......+.++......+.++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~------~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD------QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh------CCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 5799999999999999999998 787 999999977666542 222211 122222333333333222221
Q ss_pred c--------hhhhHHHHHhhccCCCCCCC--CCCCCCCCc------c---ccchHHHHHHHHHHHHH-cCcEEecCCccc
Q psy2240 96 V--------HEDKFAYLTKSKRIGIPILP--GMPMNNHGN------Y---VVRLGHVVKWLGEQAEA-MGVEIYPGIPAS 155 (182)
Q Consensus 96 ~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~---~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~ 155 (182)
. ..+.+.|+... ...+.... .+.....++ . ......+...|.+.+++ .+++|++++.|+
T Consensus 75 ~~v~~~~~~~~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVDQ-GVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHc-CCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 1 12344555432 22221111 011100001 0 11345788999999987 699999999999
Q ss_pred eeEEcCCCcEEE
Q psy2240 156 EVLYHGDGSVKG 167 (182)
Q Consensus 156 ~i~~~~~g~~~~ 167 (182)
++..+ ++.+.+
T Consensus 154 ~l~~~-~g~v~G 164 (488)
T TIGR00551 154 DLLIE-TGRVVG 164 (488)
T ss_pred eeecc-CCEEEE
Confidence 99864 455554
No 98
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.52 E-value=7.3e-13 Score=104.39 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=86.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC-CCccc-cccccCh---------hHH-----hhhhhhH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV-GGHIL-SGAVIDP---------IAL-----NELLPDW 85 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~-~g~~~-~~~~~~~---------~~~-----~~~~~~~ 85 (182)
.+||+|||||++|+++|++|++ +|.+|+|||+...+ .+.+. +++.+.+ ..+ ......|
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~------~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~ 333 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR------RGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY 333 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH------CCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999 89999999998643 33332 2222211 011 0112223
Q ss_pred Hhc---CCCCC----ccc----hhhhHHHHH---hhcc----------------CCCCCCCCCCCCCCCccccchHHHHH
Q psy2240 86 KDL---GAPLN----TPV----HEDKFAYLT---KSKR----------------IGIPILPGMPMNNHGNYVVRLGHVVK 135 (182)
Q Consensus 86 ~~~---~~~~~----~~~----~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (182)
... +.... ..+ .......+. .... ...+. .....+.+...++++..+.+
T Consensus 334 ~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~-~~~g~~~p~~G~v~p~~l~~ 412 (662)
T PRK01747 334 DALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPV-PCGGIFYPQGGWLCPAELCR 412 (662)
T ss_pred HHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCC-CCCcEEeCCCCeeCHHHHHH
Confidence 322 11110 000 011111110 0000 00000 00112333456788999999
Q ss_pred HHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEecCCC
Q psy2240 136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAKDGS 180 (182)
Q Consensus 136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~adG~ 180 (182)
.|.+.+++ |++++++++|+++..+++++.+. +...+.||.|+|+
T Consensus 413 aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 413 ALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred HHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCC
Confidence 99999988 99999999999998754433321 2346778888876
No 99
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.52 E-value=3.2e-13 Score=91.61 Aligned_cols=126 Identities=27% Similarity=0.302 Sum_probs=68.5
Q ss_pred EEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhH---HhcCCCCCccchhhhH
Q psy2240 26 VIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDW---KDLGAPLNTPVHEDKF 101 (182)
Q Consensus 26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 101 (182)
+|||||++|+++|..|.+ .|++ ++||||.+.+||.+..-... ......+ ................
T Consensus 1 ~IIGaG~aGl~~a~~l~~------~g~~~v~v~e~~~~~Gg~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE------RGIDPVVVLERNDRPGGVWRRYYSY-----TRLHSPSFFSSDFGLPDFESFSFDDS 69 (203)
T ss_dssp EEE--SHHHHHHHHHHHH------TT---EEEEESSSSSTTHHHCH-TT-----TT-BSSSCCTGGSS--CCCHSCHHHH
T ss_pred CEECcCHHHHHHHHHHHh------CCCCcEEEEeCCCCCCCeeEEeCCC-----CccccCccccccccCCcccccccccC
Confidence 799999999999999999 8999 99999998888754310000 0000000 0000000000000000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-----EeCCEEEe
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-----ATGDVGIA 176 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-----~~~~~vi~ 176 (182)
..... ........++.++|.+.+++.+++++++++|+++.++++++.+.+ ..++.||.
T Consensus 70 ~~~~~-----------------~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVl 132 (203)
T PF13738_consen 70 PEWRW-----------------PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVL 132 (203)
T ss_dssp HHHHH-----------------SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE
T ss_pred CCCCC-----------------CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEE
Confidence 00000 022356678899999999999999999999999999877765532 22455555
Q ss_pred cCC
Q psy2240 177 KDG 179 (182)
Q Consensus 177 adG 179 (182)
|.|
T Consensus 133 AtG 135 (203)
T PF13738_consen 133 ATG 135 (203)
T ss_dssp ---
T ss_pred eee
Confidence 555
No 100
>PLN02815 L-aspartate oxidase
Probab=99.51 E-value=1.2e-12 Score=101.33 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=89.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (182)
..++||+|||+|.+|+++|+.+++ .| +|+||||.+..++.+. +.+.+. ......++.++...+..+.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae------~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~ 99 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAE------YG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLC 99 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhh------CC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCC
Confidence 346899999999999999999999 78 9999999988776543 322221 1223333344333333222
Q ss_pred ccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCcc---------ccchHHHHHHHHHHHHHc-CcEEecCCc
Q psy2240 94 TPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGNY---------VVRLGHVVKWLGEQAEAM-GVEIYPGIP 153 (182)
Q Consensus 94 ~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~l~~~l~~~~~~~-gv~i~~~~~ 153 (182)
++. ..+.+.|+...+ ..+....+ +.....++. ......+...|.+.+++. +++|++++.
T Consensus 100 d~~lv~~~~~~s~e~i~~L~~~G-v~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~ 178 (594)
T PLN02815 100 DEETVRVVCTEGPERVKELIAMG-ASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHF 178 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC-CeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceE
Confidence 221 223455554322 22221111 101111111 113456888888888764 899999999
Q ss_pred cceeEEcCCC-c--EEEEE-------------eCCEEEecCCC
Q psy2240 154 ASEVLYHGDG-S--VKGIA-------------TGDVGIAKDGS 180 (182)
Q Consensus 154 v~~i~~~~~g-~--~~~v~-------------~~~~vi~adG~ 180 (182)
+++|..++++ . ++|+. ++.+|++++|.
T Consensus 179 ~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 179 AIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred hheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 9999875444 2 56543 23456677664
No 101
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.51 E-value=4.8e-13 Score=101.38 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHHHH----cC--cEEecCCccceeEEcCCCc-EE----E-EEeCCEEEecCCC
Q psy2240 126 YVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGS-VK----G-IATGDVGIAKDGS 180 (182)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~----~g--v~i~~~~~v~~i~~~~~g~-~~----~-v~~~~~vi~adG~ 180 (182)
..+++..+.+.|.+.+++ .| ++|+++++|++|+.++++. .+ + +.++.+|++|++.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGY 272 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChh
Confidence 478999999999999988 77 7899999999998753332 22 1 3344555666553
No 102
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=1.1e-12 Score=102.59 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=76.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-Ccc-ccccccC--------hhHHhhhhhhHHhcCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHI-LSGAVID--------PIALNELLPDWKDLGA 90 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~-~~~~~~~--------~~~~~~~~~~~~~~~~ 90 (182)
.++||+|||+|.+|+++|+.+++ .|.+|+||||....+ +.+ .+.+.+. .......+.+....+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae------~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~ 107 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE------LGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGD 107 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH------cCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999 899999999876554 222 2222221 1112222333333322
Q ss_pred CCCcc--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCccc---------cchHHH----HHHHHHHHHHcCcE
Q psy2240 91 PLNTP--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV---------VRLGHV----VKWLGEQAEAMGVE 147 (182)
Q Consensus 91 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~l----~~~l~~~~~~~gv~ 147 (182)
.+.+. .....+.|+...+ ..+....+. .....++.. .....+ .+.|.+.+++.|++
T Consensus 108 ~~~d~~lv~~l~~~s~~~i~wL~~~G-V~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~ 186 (640)
T PRK07573 108 FRAREANVYRLAEVSVNIIDQCVAQG-VPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVK 186 (640)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCE
Confidence 22221 1224455554322 222111000 000000000 011223 35666677788999
Q ss_pred EecCCccceeEEcCCCcEEEE
Q psy2240 148 IYPGIPASEVLYHGDGSVKGI 168 (182)
Q Consensus 148 i~~~~~v~~i~~~~~g~~~~v 168 (182)
|++++.++++..+ ++.++|+
T Consensus 187 i~~~t~v~~Li~d-~g~V~GV 206 (640)
T PRK07573 187 MYTRTEMLDLVVV-DGRARGI 206 (640)
T ss_pred EEeceEEEEEEEe-CCEEEEE
Confidence 9999999999864 4666654
No 103
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.51 E-value=4.7e-13 Score=103.28 Aligned_cols=43 Identities=40% Similarity=0.665 Sum_probs=38.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
++.++||+|||+|.+|+++|+.+++ .|.+|+|||+.+..+|.+
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~------~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAAD------SGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcee
Confidence 4568899999999999999999999 899999999998777764
No 104
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.51 E-value=1.1e-12 Score=102.44 Aligned_cols=42 Identities=33% Similarity=0.540 Sum_probs=37.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.++||+|||||+.|+++|+.|++ +|++|+||||.....|.+.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~------rGl~V~LvE~~d~a~GtSs 111 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT------RGLRVGLVEREDFSSGTSS 111 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccCCCccc
Confidence 45899999999999999999999 9999999999976666553
No 105
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.50 E-value=2.5e-12 Score=99.84 Aligned_cols=44 Identities=36% Similarity=0.534 Sum_probs=39.2
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
++.++||+|||+|++|+++|+.+++ .|.+|+||||.+..+|.+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAW------HGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCcccc
Confidence 5668999999999999999999999 8999999999987777553
No 106
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.50 E-value=1.9e-12 Score=100.38 Aligned_cols=47 Identities=43% Similarity=0.627 Sum_probs=41.2
Q ss_pred cccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 16 ~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+..++.++||+|||+|++|+++|+.+++ .|.+|+||||....+|.+.
T Consensus 10 ~~~~~~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 10 PERWDAEFDVIVIGAGAAGMSAALFAAI------AGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCccc
Confidence 4456678899999999999999999999 8999999999988777653
No 107
>KOG2820|consensus
Probab=99.50 E-value=1.4e-12 Score=91.73 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=86.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc---cC--------hhHHhhhhhhHH
Q psy2240 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV---ID--------PIALNELLPDWK 86 (182)
Q Consensus 18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~---~~--------~~~~~~~~~~~~ 86 (182)
.+.+..|++|||+|+-|+++|++|++ +|.++++||+.+.+-...++.+. +. .+...+.+..|+
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK------~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~ 76 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAK------RGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWR 76 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHh------cCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999 89999999999876543332221 11 112233345565
Q ss_pred hcCCCCCccc----------hhh--hHHHHHh---hcc------------CCCC---CCCC--CCCCCCCccccchHHHH
Q psy2240 87 DLGAPLNTPV----------HED--KFAYLTK---SKR------------IGIP---ILPG--MPMNNHGNYVVRLGHVV 134 (182)
Q Consensus 87 ~~~~~~~~~~----------~~~--~~~~~~~---~~~------------~~~~---~~~~--~~~~~~~~~~~~~~~l~ 134 (182)
.........+ ..+ .+..+.. ... ..++ .+++ .......+.++...+-.
T Consensus 77 ~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~ksl 156 (399)
T KOG2820|consen 77 NLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSL 156 (399)
T ss_pred hChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHH
Confidence 5432211111 010 1110000 000 0011 0111 01122235577888889
Q ss_pred HHHHHHHHHcCcEEecCCccceeEEc-CCCcEEEEEe
Q psy2240 135 KWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIAT 170 (182)
Q Consensus 135 ~~l~~~~~~~gv~i~~~~~v~~i~~~-~~g~~~~v~~ 170 (182)
..|.+.+++.|+.++.+.+|+.+... +.+..+.|.+
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~T 193 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQT 193 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEe
Confidence 99999999999999999999988753 3344444444
No 108
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.49 E-value=1.9e-12 Score=100.01 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=37.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--CCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--EVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--~~~g~~ 67 (182)
.++||||||+|.+|+++|+.+++ .|.+|+||||.+ ..+|.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~------~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD------AGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCCCce
Confidence 56899999999999999999999 899999999998 566654
No 109
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.49 E-value=1.7e-12 Score=98.63 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCC
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDG 163 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g 163 (182)
+.+..+++..+.+.|.+.+++.| ++|+++++|++++.++++
T Consensus 175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg 216 (494)
T PRK05257 175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG 216 (494)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC
Confidence 34567899999999999998876 899999999999875555
No 110
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.49 E-value=1.6e-12 Score=100.87 Aligned_cols=140 Identities=21% Similarity=0.151 Sum_probs=78.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAPL 92 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 92 (182)
.++||+|||+|++|+++|+.+++ . .+|+|+||.+..++.+. +.+.+. .......+.+....+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~------~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~ 76 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP------R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYL 76 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh------C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCC
Confidence 46899999999999999999987 5 89999999976555332 222211 111111111222222222
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCCCCC--CC--------------CCCccc--cchHHHHHHHHHHHHHcCc
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILPGMP--MN--------------NHGNYV--VRLGHVVKWLGEQAEAMGV 146 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~--~~~~~l~~~l~~~~~~~gv 146 (182)
.+.. ....+.|+.. ....+....+.. .. ....+. .....+...|.+.+++.|+
T Consensus 77 ~d~~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv 155 (583)
T PRK08205 77 VDQDAAEIMAKEAIDAVLDLEK-MGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGV 155 (583)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCC
Confidence 2211 1233444432 122221111100 00 000011 1345788899999988999
Q ss_pred EEecCCccceeEEcCC---CcEEEE
Q psy2240 147 EIYPGIPASEVLYHGD---GSVKGI 168 (182)
Q Consensus 147 ~i~~~~~v~~i~~~~~---g~~~~v 168 (182)
++++++.|+++..+++ +.++|+
T Consensus 156 ~i~~~~~v~~Li~~~~~~~g~v~Gv 180 (583)
T PRK08205 156 EFFNEFYVLDLLLTETPSGPVAAGV 180 (583)
T ss_pred EEEeCCEEEEEEecCCccCCcEEEE
Confidence 9999999999986442 666554
No 111
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=9.2e-13 Score=101.74 Aligned_cols=42 Identities=43% Similarity=0.632 Sum_probs=37.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..++||+|||+|++|+++|+.+++ .|++|+||||.+..+|.+
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~------~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAH------RGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCccc
Confidence 457899999999999999999999 899999999998777654
No 112
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.49 E-value=4.9e-13 Score=103.67 Aligned_cols=141 Identities=26% Similarity=0.278 Sum_probs=78.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh--------hHHhhhhhhHHhcCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP--------IALNELLPDWKDLGAP 91 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~--------~~~~~~~~~~~~~~~~ 91 (182)
.++||+|||||++|+++|+.+++. ++|.+|+||||.+..++.+. +.+.+.. ......+.+.......
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999971 13589999999976565432 2222211 1111112222222222
Q ss_pred CCccc--------hhhhHHHHHhhccCCCCCCCCCCC--CCCCc-------cc--cchHHHHHHHHHHHHHcCcEEecCC
Q psy2240 92 LNTPV--------HEDKFAYLTKSKRIGIPILPGMPM--NNHGN-------YV--VRLGHVVKWLGEQAEAMGVEIYPGI 152 (182)
Q Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~--~~~~~l~~~l~~~~~~~gv~i~~~~ 152 (182)
+.+.. ....+.|+.. ....++...+... ...++ +. .....+...|.+.+++.|+++++++
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t 156 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLEH-LGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW 156 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence 22211 1233444432 2222221111100 00000 11 1235788899998988899999999
Q ss_pred ccceeEEcCCCcEEE
Q psy2240 153 PASEVLYHGDGSVKG 167 (182)
Q Consensus 153 ~v~~i~~~~~g~~~~ 167 (182)
.|+++..+ ++.+.|
T Consensus 157 ~v~~L~~~-~g~v~G 170 (575)
T PRK05945 157 YVMRLILE-DNQAKG 170 (575)
T ss_pred EEEEEEEE-CCEEEE
Confidence 99999763 455544
No 113
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.49 E-value=9.9e-13 Score=98.52 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=41.3
Q ss_pred CccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240 124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS 180 (182)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~ 180 (182)
....+++..+.+.|.+.+++.|++|+++++|++++.++ +.+.++ ...+.||.|.|.
T Consensus 194 ~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~~~~a~~VV~a~G~ 255 (416)
T PRK00711 194 NDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGGVITADAYVVALGS 255 (416)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCcEEeCCEEEECCCc
Confidence 34567888999999999999999999999999998644 333333 234666666664
No 114
>PLN02661 Putative thiazole synthesis
Probab=99.48 E-value=1.8e-12 Score=93.22 Aligned_cols=118 Identities=20% Similarity=0.323 Sum_probs=69.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
.++||+|||||++|+++|+.|++. .|++|+||||...++|..+.++.+..... +....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~v-----------------v~~~a 148 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMV-----------------VRKPA 148 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccc-----------------cccHH
Confidence 357999999999999999999971 38999999999877764432222110000 00001
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI 168 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v 168 (182)
..++.. ....++....+ ....+...+...|.+.+.+ .|++++.++.++++..+ ++.+.|+
T Consensus 149 ~e~LeE-lGV~fd~~dgy------~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGV 209 (357)
T PLN02661 149 HLFLDE-LGVPYDEQENY------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGV 209 (357)
T ss_pred HHHHHH-cCCCcccCCCe------eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEE
Confidence 112211 11111111000 1111445666778876654 78999999999999873 4555443
No 115
>KOG1399|consensus
Probab=99.48 E-value=1.2e-12 Score=97.58 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=84.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
...+++|||||++||.+|.+|.+ .|++++++||.+..||.+.-..... ......
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~------~g~~v~vfEr~~~iGGlW~y~~~~~--------------------~~~ss~ 58 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR------EGHEVVVFERTDDIGGLWKYTENVE--------------------VVHSSV 58 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH------CCCCceEEEecCCccceEeecCccc--------------------ccccch
Confidence 45689999999999999999999 8999999999999987553110000 000000
Q ss_pred HHHHHhhccCCCCCCCCCCCCCC-CccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCC-CcEEEE--------
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNH-GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD-GSVKGI-------- 168 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~-g~~~~v-------- 168 (182)
+..+..+.....-.++++|.... ..+..+..++.++|.+.|++.+. .|.++++|..+....+ -|.+..
T Consensus 59 Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~ 138 (448)
T KOG1399|consen 59 YKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIE 138 (448)
T ss_pred hhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCccee
Confidence 11111111111112233343333 24456666999999999999874 6889998888876442 333322
Q ss_pred -EeCCEEEecCCC
Q psy2240 169 -ATGDVGIAKDGS 180 (182)
Q Consensus 169 -~~~~~vi~adG~ 180 (182)
...|.|+.|.|+
T Consensus 139 ~~ifd~VvVctGh 151 (448)
T KOG1399|consen 139 EEIFDAVVVCTGH 151 (448)
T ss_pred EEEeeEEEEcccC
Confidence 123788888887
No 116
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=1.3e-12 Score=102.00 Aligned_cols=139 Identities=21% Similarity=0.229 Sum_probs=79.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc----C----hhHHhhhhhhHHhcCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI----D----PIALNELLPDWKDLGAP 91 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~----~----~~~~~~~~~~~~~~~~~ 91 (182)
.++||+|||+|++|+++|+.+++ .|.+|+||||.+..++.+. +.+.+ . .......+.+....+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae------~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~ 80 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE------RGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKF 80 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH------CCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999 8999999999986655432 22211 0 11222223232222222
Q ss_pred CCcc--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCccc---------cchHHHHHHHHHHHHHc--------
Q psy2240 92 LNTP--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV---------VRLGHVVKWLGEQAEAM-------- 144 (182)
Q Consensus 92 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~l~~~l~~~~~~~-------- 144 (182)
+.+. .....+.|+.. ....+....+. .....++.. .....+...|.+.+++.
T Consensus 81 l~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~ 159 (626)
T PRK07803 81 LNNWRMAELHAKEAPDRVWELET-YGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAEL 159 (626)
T ss_pred CCcHHHHHHHHHHhHHHHHHHHH-CCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccc
Confidence 2222 12233444433 22222211110 000001110 12356888888888765
Q ss_pred C-----cEEecCCccceeEEcCCCcEEE
Q psy2240 145 G-----VEIYPGIPASEVLYHGDGSVKG 167 (182)
Q Consensus 145 g-----v~i~~~~~v~~i~~~~~g~~~~ 167 (182)
| +++++++.|+++..+ ++.+.|
T Consensus 160 G~~~~~v~i~~~~~v~~L~~~-~g~v~G 186 (626)
T PRK07803 160 GDYEARIKVFAECTITELLKD-GGRIAG 186 (626)
T ss_pred cCCcCceEEEeCCEEEEEEEE-CCEEEE
Confidence 6 999999999999863 455554
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.47 E-value=1.2e-12 Score=97.15 Aligned_cols=133 Identities=26% Similarity=0.279 Sum_probs=76.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
||+|||||++|+++|+.|++ .|++|+|||+.+..++....+ .. ...+ ...+ +...... .|
T Consensus 1 DviIiGaG~AGl~~A~~la~------~g~~v~liE~~~~~~~~~~~~-~~-~~~~-------~~~~--~~~~~~~---~~ 60 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR------PGLRVQLIEPHPPIPGNHTYG-VW-DDDL-------SDLG--LADCVEH---VW 60 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCCCcccc-cc-Hhhh-------hhhc--hhhHHhh---cC
Confidence 89999999999999999999 899999999987655321100 00 0000 0000 0000000 00
Q ss_pred HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEEE-----EEeCCEEEec
Q psy2240 104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKG-----IATGDVGIAK 177 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~-----v~~~~~vi~a 177 (182)
.....+..+... .........+++..+.+.|.+.+.+.|++++ ..+|+++..++++ ..+. ....++||.|
T Consensus 61 -~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A 136 (388)
T TIGR01790 61 -PDVYEYRFPKQP--RKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDA 136 (388)
T ss_pred -CCceEEecCCcc--hhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEEC
Confidence 000000000000 0011223468999999999999988899886 5578888764222 2221 3456899999
Q ss_pred CCC
Q psy2240 178 DGS 180 (182)
Q Consensus 178 dG~ 180 (182)
+|.
T Consensus 137 ~G~ 139 (388)
T TIGR01790 137 RGF 139 (388)
T ss_pred CCC
Confidence 995
No 118
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.47 E-value=6e-12 Score=97.68 Aligned_cols=42 Identities=36% Similarity=0.627 Sum_probs=38.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..++||+|||+|++|+++|+.+++ +|.+|+||||.+..+|.+
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~------~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARK------LGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH------cCCeEEEEecCCCCCCcc
Confidence 347899999999999999999999 899999999999877765
No 119
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.47 E-value=2.1e-12 Score=95.17 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=34.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+||+|||||++|+++|++|++ +|.+|+|||+.....|.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~------~G~~V~vle~~~~~~gaS 39 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR------RGLSVTVIERSSRAQGAS 39 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCcc
Confidence 589999999999999999999 899999999987544444
No 120
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.47 E-value=3.1e-12 Score=96.82 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=32.2
Q ss_pred CCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEc
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYH 160 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~ 160 (182)
+.+..++...+.+.|.+.+.+ .|++++++++|++++.+
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~ 214 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERL 214 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEC
Confidence 345678999999999999865 58999999999999875
No 121
>PTZ00367 squalene epoxidase; Provisional
Probab=99.47 E-value=2.9e-13 Score=104.03 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=67.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (182)
+.++||+|||||++|+++|+.|++ .|++|+||||.+.....-..+..+.+. .+.+.++.|.... .......
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar------~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~-~i~~~~~ 103 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSK------QGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAE-GIGMPCF 103 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHh------cCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHh-hcCccee
Confidence 356899999999999999999999 899999999986211000122223332 2333344443321 1111111
Q ss_pred hhhHHHHHhhc-cCCCCCCCCCCCCCCCccccchHHHHHHHHHHH---HHcCcEEecCCccceeEE
Q psy2240 98 EDKFAYLTKSK-RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLY 159 (182)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~gv~i~~~~~v~~i~~ 159 (182)
. +..+...+ ....+. . ....+..+++..+.+.|.+.+ ...+++++.. +|+++..
T Consensus 104 ~--~~v~~~~G~~~~i~~----~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~ 161 (567)
T PTZ00367 104 G--YVVFDHKGKQVKLPY----G-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLE 161 (567)
T ss_pred e--eEEEECCCCEEEecC----C-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEecc
Confidence 0 00000001 000110 0 111245567888888898887 3457888654 6766643
No 122
>KOG1298|consensus
Probab=99.47 E-value=1.3e-13 Score=98.42 Aligned_cols=144 Identities=26% Similarity=0.383 Sum_probs=82.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHH---hcCCCCCc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWK---DLGAPLNT 94 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~ 94 (182)
+..+||+|||+|++|+++|+.|++ .|.+|.||||+-....+. -|..+.+... ...++..+ ..+.+...
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~k------dGRrVhVIERDl~EPdRi-vGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~ 115 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAK------DGRRVHVIERDLSEPDRI-VGELLQPGGYLALSKLGLEDCVEGIDAQRVT 115 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhh------CCcEEEEEecccccchHH-HHHhcCcchhHHHHHhCHHHHhhcccceEee
Confidence 456899999999999999999999 899999999985322111 1111222111 11111111 11111000
Q ss_pred cchhhhHHHHH--hhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe-
Q psy2240 95 PVHEDKFAYLT--KSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT- 170 (182)
Q Consensus 95 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~- 170 (182)
.+..+. ++...+++. ..++ ..+.+..++..++.+-|++.+-. .++++..+ .|+++.+ +++.+.||..
T Consensus 116 -----Gy~ifk~gk~v~~pyP~-~~f~-~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle-e~gvvkGV~yk 186 (509)
T KOG1298|consen 116 -----GYAIFKDGKEVDLPYPL-KNFP-SDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE-EEGVVKGVTYK 186 (509)
T ss_pred -----eeEEEeCCceeeccCCC-cCCC-CCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh-ccCeEEeEEEe
Confidence 000111 111122221 1111 22225677788999999998755 68888776 6777765 5567777654
Q ss_pred ----------CCEEEecCC
Q psy2240 171 ----------GDVGIAKDG 179 (182)
Q Consensus 171 ----------~~~vi~adG 179 (182)
+.+.|-|||
T Consensus 187 ~k~gee~~~~ApLTvVCDG 205 (509)
T KOG1298|consen 187 NKEGEEVEAFAPLTVVCDG 205 (509)
T ss_pred cCCCceEEEecceEEEecc
Confidence 367888888
No 123
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.47 E-value=3.1e-12 Score=99.23 Aligned_cols=136 Identities=23% Similarity=0.253 Sum_probs=75.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------h-hHHhhhhhhHHhcCCCCCc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------P-IALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~~ 94 (182)
||+|||+|++|+++|+.+++ .|.+|+||||.+..++.+. +.+.+. + ......+.+....+..+.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae------~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d 74 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK------AGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLAD 74 (566)
T ss_pred CEEEECccHHHHHHHHHHHH------CCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCC
Confidence 89999999999999999999 8999999999986554432 111110 1 1111111111111111211
Q ss_pred c--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCc-------c--ccchHHHHHHHHHHHHHcCcEEecCCccc
Q psy2240 95 P--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGN-------Y--VVRLGHVVKWLGEQAEAMGVEIYPGIPAS 155 (182)
Q Consensus 95 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~ 155 (182)
. ...+.+.|+... ...+....+. .....++ + ......+...|.+.+++.|+++++++.++
T Consensus 75 ~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~ 153 (566)
T TIGR01812 75 QDAVEYMCQEAPKAILELEHW-GVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFAL 153 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEE
Confidence 1 112334454332 1222111110 0000000 0 11234678888888888899999999999
Q ss_pred eeEEcCCCcEEE
Q psy2240 156 EVLYHGDGSVKG 167 (182)
Q Consensus 156 ~i~~~~~g~~~~ 167 (182)
++..+ ++.+.|
T Consensus 154 ~L~~~-~g~v~G 164 (566)
T TIGR01812 154 DLIHD-DGRVRG 164 (566)
T ss_pred EEEEe-CCEEEE
Confidence 99874 466654
No 124
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.46 E-value=5.5e-13 Score=98.42 Aligned_cols=133 Identities=22% Similarity=0.232 Sum_probs=77.1
Q ss_pred cEEEECCChHHHHHHHHH--HHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 24 DVVIVGGGPAGMAAAIRL--KQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l--~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
||+|||||++|+++|++| ++ .|.+|+|||+.+...-......+ .|...... . ...+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~------~g~~Vllid~~~~~~~~~~~tW~-----------~~~~~~~~----~-~~~v 58 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR------PGLSVLLIDPKPKPPWPNDRTWC-----------FWEKDLGP----L-DSLV 58 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCccccccCCcccc-----------cccccccc----h-HHHH
Confidence 899999999999999999 55 79999999998765211011101 11110000 0 0000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA 176 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~ 176 (182)
........+..+.... .........+++..|.+.|.+.+. .+..++.+++|++|+.++++..+. ...+++||+
T Consensus 59 ~~~w~~~~v~~~~~~~-~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvD 136 (374)
T PF05834_consen 59 SHRWSGWRVYFPDGSR-ILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVD 136 (374)
T ss_pred heecCceEEEeCCCce-EEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEE
Confidence 0000000000000000 001122458999999999999998 455677789999998755433221 345688999
Q ss_pred cCCC
Q psy2240 177 KDGS 180 (182)
Q Consensus 177 adG~ 180 (182)
|+|.
T Consensus 137 a~g~ 140 (374)
T PF05834_consen 137 ARGP 140 (374)
T ss_pred CCCc
Confidence 9985
No 125
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.45 E-value=5.8e-12 Score=95.50 Aligned_cols=149 Identities=26% Similarity=0.287 Sum_probs=81.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC-----hhHHhhhhhhHHhcCCCCCccc-
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-----PIALNELLPDWKDLGAPLNTPV- 96 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 96 (182)
.||+|||+|++|+++|+.+++ .|.+|+||||.+..+....+.+.+. .......+.++...+....++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae------~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK------KGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH------CCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 599999999999999999999 8999999999864322112222221 1122222222222222222111
Q ss_pred -------hhhhHHHHHhhccCCCCC--CCCCCCCCCC--ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240 97 -------HEDKFAYLTKSKRIGIPI--LPGMPMNNHG--NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV 165 (182)
Q Consensus 97 -------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~ 165 (182)
..+.+.|+... ...+.. ......+... ........+.+.|.+.+++.|++++++ .++++.. +++.+
T Consensus 76 v~~~~~~~~~~i~~L~~~-Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v 152 (466)
T PRK08401 76 VWNVISKSSEAYDFLTSL-GLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKA 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEE
Confidence 12233444332 222211 0000101000 001124578899999999899999876 7888875 45566
Q ss_pred EEE-------EeCCEEEecCCC
Q psy2240 166 KGI-------ATGDVGIAKDGS 180 (182)
Q Consensus 166 ~~v-------~~~~~vi~adG~ 180 (182)
+++ .++.+|++++|.
T Consensus 153 ~Gv~~~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 153 YGVFLDGELLKFDATVIATGGF 174 (466)
T ss_pred EEEEECCEEEEeCeEEECCCcC
Confidence 553 344566666664
No 126
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.45 E-value=3.5e-12 Score=100.00 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
.++||+|||+|.+|+++|+.+++ .|.+|+||||.+..++.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae------~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ------RGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH------cCCCEEEEeCCCCCCcc
Confidence 46899999999999999999999 89999999999876554
No 127
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=3.4e-12 Score=99.13 Aligned_cols=139 Identities=20% Similarity=0.203 Sum_probs=77.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCC---ceEEEEecCCCCCCccc-cccccC----h---hHHhhhhhhHHhcC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE---LKVCLVEKAAEVGGHIL-SGAVID----P---IALNELLPDWKDLG 89 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g---~~v~vlE~~~~~~g~~~-~~~~~~----~---~~~~~~~~~~~~~~ 89 (182)
.++||+|||+|++|+++|+.+++ .| .+|+||||.+..++.+. +++.+. . ......+.+....+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~------~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g 77 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE------RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGS 77 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH------hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhh
Confidence 36899999999999999999999 77 89999999987665443 222211 1 11112222222222
Q ss_pred CCCCccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcccc---------chHHHHHHHHHHHHH-cCcEEe
Q psy2240 90 APLNTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNYVV---------RLGHVVKWLGEQAEA-MGVEIY 149 (182)
Q Consensus 90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~l~~~l~~~~~~-~gv~i~ 149 (182)
..+.++. ..+.+.|+... ...+....+.. ....++... ....+...|.+.+.+ .+++++
T Consensus 78 ~~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~ 156 (577)
T PRK06069 78 DFLADQDAVEVFVREAPEEIRFLDHW-GVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFY 156 (577)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHc-CCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEE
Confidence 2222111 12334555432 22221111100 000011101 234578888888766 689999
Q ss_pred cCCccceeEEcCCCcEEE
Q psy2240 150 PGIPASEVLYHGDGSVKG 167 (182)
Q Consensus 150 ~~~~v~~i~~~~~g~~~~ 167 (182)
+++.++++..+ ++.++|
T Consensus 157 ~~~~v~~Li~~-~g~v~G 173 (577)
T PRK06069 157 DEHFVTSLIVE-NGVFKG 173 (577)
T ss_pred ECCEEEEEEEE-CCEEEE
Confidence 99999999763 455554
No 128
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.44 E-value=2.5e-12 Score=93.82 Aligned_cols=139 Identities=24% Similarity=0.346 Sum_probs=77.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEE-ecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV-EKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vl-E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
||+|||||.+|+.+|+.+++ .|.+|+|+ ++....+..+ +...+.......+....+..+ ..+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr------~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalg---------g~m~ 64 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR------MGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALG---------GLMG 64 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT----------SHH
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhh---------hHHH
Confidence 89999999999999999999 89999999 3433343322 222211111111111122221 1111
Q ss_pred HHHhhccCCCCCC--CCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe-------CC
Q psy2240 103 YLTKSKRIGIPIL--PGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT-------GD 172 (182)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~-------~~ 172 (182)
.........+..+ ...|.-......+++..+.+++.+.+++ .+++|+ +.+|++|.. +++.+.+|.+ ++
T Consensus 65 ~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~ 142 (392)
T PF01134_consen 65 RAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEAD 142 (392)
T ss_dssp HHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEEC
T ss_pred HHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecC
Confidence 1222222211111 1111111114589999999999999988 678886 579999986 5678888776 47
Q ss_pred EEEecCCC
Q psy2240 173 VGIAKDGS 180 (182)
Q Consensus 173 ~vi~adG~ 180 (182)
.||-|.|.
T Consensus 143 ~vVlaTGt 150 (392)
T PF01134_consen 143 AVVLATGT 150 (392)
T ss_dssp EEEE-TTT
T ss_pred EEEEeccc
Confidence 88888875
No 129
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.44 E-value=5.5e-12 Score=97.88 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 94 (182)
.++||+|||+|++|+++|+.+++. ++|.+|+||||.+..++.+. +++.+. .......+.+....+..+.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d 78 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCE 78 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCC
Confidence 468999999999999999999871 13589999999987666543 222211 11222223333333322222
Q ss_pred cc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc------c---cchHHHHHHHHHHHHHc-CcEEecCCcc
Q psy2240 95 PV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY------V---VRLGHVVKWLGEQAEAM-GVEIYPGIPA 154 (182)
Q Consensus 95 ~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~---~~~~~l~~~l~~~~~~~-gv~i~~~~~v 154 (182)
.. ..+.+.|+.. ....+....+. .....++. . -....+...|.+.+.+. ++++++++.+
T Consensus 79 ~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v 157 (582)
T PRK09231 79 QDVVEYFVHHCPTEMTQLEQ-WGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFV 157 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEE
Confidence 11 1234455543 22222211110 00000110 0 12346788888887664 7999999999
Q ss_pred ceeEEcCCCcEEE
Q psy2240 155 SEVLYHGDGSVKG 167 (182)
Q Consensus 155 ~~i~~~~~g~~~~ 167 (182)
+++..+ ++.+.|
T Consensus 158 ~~Li~~-~g~v~G 169 (582)
T PRK09231 158 LDILVD-DGHVRG 169 (582)
T ss_pred EEEEEe-CCEEEE
Confidence 999874 566655
No 130
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.44 E-value=5.8e-12 Score=96.43 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=84.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 94 (182)
.++||+|||+|.+|+++|+.+++ |.+|+||||.+..++.+. +.+.+. .......+.+....+..+.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d 74 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNN 74 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCC
Confidence 36899999999999999999964 789999999987776553 333221 12233333333333322222
Q ss_pred cc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCc------c----ccchHHHHHHHHHHHHHcCcEEecCCcc
Q psy2240 95 PV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGN------Y----VVRLGHVVKWLGEQAEAMGVEIYPGIPA 154 (182)
Q Consensus 95 ~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~----~~~~~~l~~~l~~~~~~~gv~i~~~~~v 154 (182)
.. ..+.+.|+.. ....++...+. .....+. . ......+.+.|.+.++ .|++|++++.+
T Consensus 75 ~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v 152 (510)
T PRK08071 75 ERAVRYLVEEGPKEIQELIE-NGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMV 152 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEh
Confidence 11 1233444433 22222211000 0000000 0 1123467888888776 59999999999
Q ss_pred ceeEEcCCCcEEEEE------------eCCEEEecCCC
Q psy2240 155 SEVLYHGDGSVKGIA------------TGDVGIAKDGS 180 (182)
Q Consensus 155 ~~i~~~~~g~~~~v~------------~~~~vi~adG~ 180 (182)
+++.. +++.+.++. ++.+|++++|.
T Consensus 153 ~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 153 IDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred hheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 99976 345555432 24556666664
No 131
>KOG2614|consensus
Probab=99.44 E-value=7.7e-13 Score=95.38 Aligned_cols=39 Identities=38% Similarity=0.652 Sum_probs=34.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
+.+|+|||||++|+++|+.|++ .|++|+|+|+...+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r------~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR------KGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH------cCCeEEEEeeccccccC
Confidence 3579999999999999999999 89999999998766543
No 132
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.44 E-value=2.2e-12 Score=100.24 Aligned_cols=149 Identities=18% Similarity=0.157 Sum_probs=79.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC-CCcc--ccccccChhHH--hhhhhhH-----HhcC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV-GGHI--LSGAVIDPIAL--NELLPDW-----KDLG 89 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~-~g~~--~~~~~~~~~~~--~~~~~~~-----~~~~ 89 (182)
.+..+|+|||||++|+++|+.|++ .|++|+|+||.+.. .+.. ..+-.+.+..+ .+.++.+ ...+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r------~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g 152 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK------KGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAG 152 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhc
Confidence 345799999999999999999999 89999999998621 1100 01112233222 2222211 1111
Q ss_pred CCCCccchhhhHHHHHh-hcc--CCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240 90 APLNTPVHEDKFAYLTK-SKR--IGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV 165 (182)
Q Consensus 90 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~ 165 (182)
........ .+... ... ..++.... .....+..+.++|..|.+.|.+.+.. ..++++++|++++.++++..
T Consensus 153 ~~~~~~i~----~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~Vt 226 (668)
T PLN02927 153 CITGDRIN----GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVT 226 (668)
T ss_pred Ccccceee----eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEE
Confidence 10000000 00000 000 00110000 00001124578999999999776532 24778999999986544332
Q ss_pred EE-----EEeCCEEEecCCC
Q psy2240 166 KG-----IATGDVGIAKDGS 180 (182)
Q Consensus 166 ~~-----v~~~~~vi~adG~ 180 (182)
+. ....++||+|||.
T Consensus 227 V~~~dG~ti~aDlVVGADG~ 246 (668)
T PLN02927 227 VVLENGQRYEGDLLVGADGI 246 (668)
T ss_pred EEECCCCEEEcCEEEECCCC
Confidence 21 2346999999996
No 133
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.43 E-value=6e-12 Score=97.53 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=81.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 95 (182)
++||+|||+|++|+++|+.+++. ++|.+|+||||....++.+. +++.+. .......+.+....+..+.+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~ 78 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQ 78 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcH
Confidence 57999999999999999999871 13689999999987666543 322221 122233333333333333221
Q ss_pred c--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcc------c---cchHHHHHHHHHHHHH-cCcEEecCCccc
Q psy2240 96 V--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNY------V---VRLGHVVKWLGEQAEA-MGVEIYPGIPAS 155 (182)
Q Consensus 96 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~---~~~~~l~~~l~~~~~~-~gv~i~~~~~v~ 155 (182)
. ..+.+.|+.. ....+....+.. ....++. . -....+...|.+.+.+ .++++++++.++
T Consensus 79 ~lv~~l~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~ 157 (580)
T TIGR01176 79 DVVEYFVAEAPKEMVQLEH-WGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVT 157 (580)
T ss_pred HHHHHHHHHhHHHHHHHHH-cCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEE
Confidence 1 2344555533 222222111100 0000110 1 1345788899888876 479999999999
Q ss_pred eeEEcCCCcEEEE
Q psy2240 156 EVLYHGDGSVKGI 168 (182)
Q Consensus 156 ~i~~~~~g~~~~v 168 (182)
++..+ ++.+.|+
T Consensus 158 ~Li~~-~g~v~Gv 169 (580)
T TIGR01176 158 DLLVD-DGRVCGL 169 (580)
T ss_pred EEEee-CCEEEEE
Confidence 99874 5666654
No 134
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.43 E-value=3.1e-12 Score=96.29 Aligned_cols=152 Identities=24% Similarity=0.240 Sum_probs=91.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC-----------hh----HHhhhhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-----------PI----ALNELLPD 84 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~-----------~~----~~~~~~~~ 84 (182)
+.++||+|||||++|+.+|+.++. +|++|+|+|++....|.++....+- .+ .+.+. ..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~------RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er-~v 82 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG------RGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAER-EV 82 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh------CCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHH-HH
Confidence 367999999999999999999999 9999999999998887665332221 11 11111 01
Q ss_pred HHhcCCCCCc------c-ch--------hhhHHHHHhhccC----------CCC-CCCCCCC---------CCCCccccc
Q psy2240 85 WKDLGAPLNT------P-VH--------EDKFAYLTKSKRI----------GIP-ILPGMPM---------NNHGNYVVR 129 (182)
Q Consensus 85 ~~~~~~~~~~------~-~~--------~~~~~~~~~~~~~----------~~~-~~~~~~~---------~~~~~~~~~ 129 (182)
+......+.. + .. ...+..++..... ... .....|. .....++++
T Consensus 83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd 162 (532)
T COG0578 83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD 162 (532)
T ss_pred HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec
Confidence 1111111100 0 00 0111111111110 000 0000111 222345788
Q ss_pred hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------------CCEEEecCCC
Q psy2240 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------------GDVGIAKDGS 180 (182)
Q Consensus 130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------------~~~vi~adG~ 180 (182)
..+|.-.....+.++|.+++..++|+++..+. + +++|.. .+.||.|.|.
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 88999999999999999999999999998744 4 666553 4788988884
No 135
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.42 E-value=1.4e-11 Score=94.93 Aligned_cols=141 Identities=21% Similarity=0.277 Sum_probs=80.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (182)
+.++||+|||+|++|+++|+.+++ . .+|+||||.+..+|.+. +++.+. .......+.+....+..+.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~------~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE------H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH------C-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 456899999999999999999988 5 79999999987666542 333221 1222233333332222222
Q ss_pred ccc--------hhhhHHHHHhhccCCCCCCC------CCCCCCCCcc----cc-----chHHHHHHHHHHHHH-cCcEEe
Q psy2240 94 TPV--------HEDKFAYLTKSKRIGIPILP------GMPMNNHGNY----VV-----RLGHVVKWLGEQAEA-MGVEIY 149 (182)
Q Consensus 94 ~~~--------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~-----~~~~l~~~l~~~~~~-~gv~i~ 149 (182)
+.. ....+.|+...+ ..+.... .+.....++. .+ ....+...|.+.+++ .+++|+
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~~G-v~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~ 157 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLIDQG-VPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL 157 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 211 123345554322 2222111 1111111110 11 234678888888866 489999
Q ss_pred cCCccceeEEcC-----CCcEEEE
Q psy2240 150 PGIPASEVLYHG-----DGSVKGI 168 (182)
Q Consensus 150 ~~~~v~~i~~~~-----~g~~~~v 168 (182)
+++.++++..++ ++.++|+
T Consensus 158 ~~~~v~~Li~~~~~~~~~g~v~Gv 181 (536)
T PRK09077 158 ERHNAIDLITSDKLGLPGRRVVGA 181 (536)
T ss_pred eeEEeeeeeecccccCCCCEEEEE
Confidence 999999987643 2566654
No 136
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.42 E-value=2.9e-12 Score=98.03 Aligned_cols=113 Identities=22% Similarity=0.288 Sum_probs=69.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
.|+|||||++||++|..|.+ .|++++++||.+..||.+......... .-..|+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e------~g~~~~~fE~~~~iGG~W~~~~~~~~g----~~~~y~s---------------- 56 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE------EGLEVTCFEKSDDIGGLWRYTENPEDG----RSSVYDS---------------- 56 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH------TT-EEEEEESSSSSSGGGCHSTTCCCS----EGGGSTT----------------
T ss_pred EEEEECccHHHHHHHHHHHH------CCCCCeEEecCCCCCccCeeCCcCCCC----ccccccc----------------
Confidence 69999999999999999999 899999999999999865311100000 0000000
Q ss_pred HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCC
Q psy2240 104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD 162 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~ 162 (182)
+..+.......++++|........+++.++.++|.+.+++.+. .|+++++|+++++.++
T Consensus 57 l~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d 117 (531)
T PF00743_consen 57 LHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPD 117 (531)
T ss_dssp -B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETT
T ss_pred eEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccc
Confidence 0001111111223333322223356778999999999999885 5999999999987554
No 137
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.41 E-value=1.7e-12 Score=96.61 Aligned_cols=127 Identities=21% Similarity=0.302 Sum_probs=70.5
Q ss_pred EEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc---cccccChh--HHhhhhhhHHhcCCCC----Cccc
Q psy2240 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL---SGAVIDPI--ALNELLPDWKDLGAPL----NTPV 96 (182)
Q Consensus 26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~---~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~ 96 (182)
+|||||++|+++|+.|++ +|.+|+||||.+..++... .+.++... ........+....... ....
T Consensus 1 vIIGgG~aGl~aAi~aa~------~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR------EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHh------cCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 699999999999999999 8999999999988775432 11221110 0111111110000000 0001
Q ss_pred hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC
Q psy2240 97 HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD 162 (182)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~ 162 (182)
..+.+.|+...+ ..+........++ ..-....+.+.|.+.+++.|++++++++|+++..+++
T Consensus 75 ~~d~~~~~~~~G-v~~~~~~~g~~~p---~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~ 136 (400)
T TIGR00275 75 NKDLIDFFESLG-LELKVEEDGRVFP---CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN 136 (400)
T ss_pred HHHHHHHHHHcC-CeeEEecCCEeEC---CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC
Confidence 122334443221 2111111101110 1113467888999999999999999999999976443
No 138
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.41 E-value=3.8e-13 Score=107.26 Aligned_cols=135 Identities=24% Similarity=0.302 Sum_probs=77.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
+|+||||||+|+++|+.|++. ++|++|+|+||.+... ....+-.+.+..+ +.+..+.. .....+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l-~~L~~~~~--------~~~~~~~~ 67 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATL-GNLRAADP--------VSAAAIGD 67 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHH-HHHHhcCH--------HHHHHHHH
Confidence 699999999999999999981 1289999999987542 1112212222221 22221110 00000000
Q ss_pred -HHhhccCCCCCCCCCC--CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCCC
Q psy2240 104 -LTKSKRIGIPILPGMP--MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 180 (182)
Q Consensus 104 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG~ 180 (182)
+.......+. ..... ........++|..|.+.|.+++.+.|++|+++++|+++.... ...|+||+|||.
T Consensus 68 ~~~~~~~~~~~-~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~~-------~~~D~VVgADG~ 139 (765)
T PRK08255 68 AFNHWDDIDVH-FKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQALA-------ADADLVIASDGL 139 (765)
T ss_pred hcccCCceEEE-ECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhhh-------cCCCEEEEcCCC
Confidence 0000000000 00000 011112358899999999999999999999999998874211 356999999995
No 139
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.41 E-value=2.3e-11 Score=94.54 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=75.8
Q ss_pred cEEEECCChHHHHHHHHHH----HhhhhcCCCceEEEEecCCCCCCccccccc--cCh--------hHHhhhhhhHHhcC
Q psy2240 24 DVVIVGGGPAGMAAAIRLK----QLAEKDGKELKVCLVEKAAEVGGHILSGAV--IDP--------IALNELLPDWKDLG 89 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~----~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~--~~~--------~~~~~~~~~~~~~~ 89 (182)
||||||+|++||++|+.++ + .|.+|+||||....+..+.+.+. +.. ......+.+.....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e------~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK------KGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh------CCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 5 68999999998754332222231 111 11122222222222
Q ss_pred CCCCccc--------hhhhHHHHHhhccCCCCCCC-CCCCCCCCcc--ccchHHHHHHHHHHHHHcCcEEecCCccceeE
Q psy2240 90 APLNTPV--------HEDKFAYLTKSKRIGIPILP-GMPMNNHGNY--VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL 158 (182)
Q Consensus 90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~ 158 (182)
..+.+.. ..+.+.|+.. ....+.... +......+.. .+..+.+.+.+...+++.++++++++.++++.
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~-~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEE-WGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH-cCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 2222211 1244555543 222222111 1111111000 11244566666666766678999999999998
Q ss_pred EcCC--CcEEEEE
Q psy2240 159 YHGD--GSVKGIA 169 (182)
Q Consensus 159 ~~~~--g~~~~v~ 169 (182)
.+++ |+++|+.
T Consensus 154 ~d~~~~GrV~Gv~ 166 (614)
T TIGR02061 154 LDKNTPNRIAGAV 166 (614)
T ss_pred ecCCCCCeEEEEE
Confidence 7543 6777643
No 140
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.39 E-value=1.5e-11 Score=94.26 Aligned_cols=150 Identities=22% Similarity=0.227 Sum_probs=83.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (182)
.++||+|||+|.+|+++|+.++ +.+|+||||.+. .++.+. +.+.+. .......+.++...+..+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--------~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~ 79 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--------PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLC 79 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--------cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCC
Confidence 4689999999999999999995 359999999986 344332 222221 1222333333333332222
Q ss_pred ccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCc------cc----cchHHHHHHHHHHHHHc-CcEEecCC
Q psy2240 94 TPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGN------YV----VRLGHVVKWLGEQAEAM-GVEIYPGI 152 (182)
Q Consensus 94 ~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~----~~~~~l~~~l~~~~~~~-gv~i~~~~ 152 (182)
+.. ..+.+.|+...+ ..+....+ +.....+. .. -....+.+.|.+.+++. |+++++++
T Consensus 80 d~~~v~~~~~~s~~~i~wL~~~G-v~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~ 158 (513)
T PRK07512 80 DPAVAALITAEAPAAIEDLLRLG-VPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGA 158 (513)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC-CccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECc
Confidence 211 123445554322 22221111 10000000 01 12356888898888764 89999999
Q ss_pred ccceeEEcCCCcEEEEE-----------eCCEEEecCCC
Q psy2240 153 PASEVLYHGDGSVKGIA-----------TGDVGIAKDGS 180 (182)
Q Consensus 153 ~v~~i~~~~~g~~~~v~-----------~~~~vi~adG~ 180 (182)
.|+++..+ ++.++++. ++.+|++++|.
T Consensus 159 ~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 159 EARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred Chhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 99998763 45555432 34566666664
No 141
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.39 E-value=3.2e-11 Score=89.58 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=36.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
++++||+|||||++|+++|++|++ .|.+|+++|+.....+.+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~------~G~~V~vie~~~~~~g~s 43 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE------RGADVTVLEAGEAGGGAA 43 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH------cCCEEEEEecCccCCcch
Confidence 456899999999999999999999 899999999998655433
No 142
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.37 E-value=1.7e-11 Score=92.62 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=45.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
+|||+||||||+|+++|+.+++ .|.+|+|+|+. ..||.....++++.+.+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~ 54 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN------HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYG 54 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh------CCCcEEEEecC-ccCceeecCCcCchHHHHHH
Confidence 5899999999999999999999 89999999995 67887777778777765443
No 143
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.37 E-value=3.5e-11 Score=91.38 Aligned_cols=53 Identities=32% Similarity=0.470 Sum_probs=44.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~ 78 (182)
+..+||+|||||++|+++|+.|++ .|.+|+|||+.+..||.....+++++..+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~------~G~~v~liE~~~~~GG~~~~~gcipsk~l 55 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAK------LGKRVAVIERYRNVGGGCTHTGTIPSKAL 55 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccccccccccCCCCHHHH
Confidence 346899999999999999999999 89999999998778887666666665544
No 144
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.37 E-value=9.2e-11 Score=89.39 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=37.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..+++|||||++||++|+.|.+- .+.+|.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~d--g~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRD--GQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc--cCCCCCcEEEEeCCCCCCCCcc
Confidence 46899999999999999999981 1224789999999999888653
No 145
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.37 E-value=2.2e-11 Score=94.85 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=74.4
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-Ccc-cccccc--------ChhHHhhhhhhHHhcCCCCCc
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHI-LSGAVI--------DPIALNELLPDWKDLGAPLNT 94 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 94 (182)
|+|||+|++|+++|+.+++ .|.+|+||||.+..+ +.+ .+.+.+ ........+.++...+..+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae------~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d 74 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE------LGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRAR 74 (603)
T ss_pred CEEECccHHHHHHHHHHHH------cCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCC
Confidence 6999999999999999999 899999999998433 322 222211 011222233333333322222
Q ss_pred c--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCcc---------ccchHHHHHHHHHHHHH----cCcEEecC
Q psy2240 95 P--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNY---------VVRLGHVVKWLGEQAEA----MGVEIYPG 151 (182)
Q Consensus 95 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~l~~~~~~----~gv~i~~~ 151 (182)
. ...+.+.|+...+ ..+....+. ..+..++. .-....+...|.+.+++ .|++++++
T Consensus 75 ~~lv~~l~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~ 153 (603)
T TIGR01811 75 ESPVKRLAVASPEIIDLMDAMG-VPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEG 153 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeC
Confidence 1 1223455554322 222111100 00000000 01234566666655543 37999999
Q ss_pred CccceeEEcCCCcEEEEE
Q psy2240 152 IPASEVLYHGDGSVKGIA 169 (182)
Q Consensus 152 ~~v~~i~~~~~g~~~~v~ 169 (182)
++++++..++++.++|+.
T Consensus 154 t~v~~Li~dd~grV~GV~ 171 (603)
T TIGR01811 154 WEMLDIIVVDGNRARGII 171 (603)
T ss_pred cEEEEEEEcCCCEEEEEE
Confidence 999999876556666643
No 146
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.36 E-value=3e-11 Score=91.84 Aligned_cols=56 Identities=36% Similarity=0.494 Sum_probs=47.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
+..+||+|||||++|+.+|..|++ .|.+|+|||+.+..||...+.++++.+.+...
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~ 57 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAAD------LGLETVCVERYSTLGGVCLNVGCIPSKALLHV 57 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCcccccccCCCcccHHHHHHH
Confidence 446899999999999999999999 89999999998778887777777777665443
No 147
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.36 E-value=3.3e-11 Score=91.54 Aligned_cols=52 Identities=44% Similarity=0.613 Sum_probs=43.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~ 79 (182)
.+||++|||||++|+++|+.|++ .|.+|+|+|+.+ .||.....++++.+.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciP~k~l~ 54 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ------LGLKVAIVEKEK-LGGTCLNRGCIPSKALL 54 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH------CCCcEEEEeccc-cccceeecccCCcHHHH
Confidence 46899999999999999999999 899999999986 78776666666655443
No 148
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.35 E-value=4.5e-11 Score=87.98 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=45.0
Q ss_pred ccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCC-cEEE-----------EEeCCEEEecCCCC
Q psy2240 125 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG-SVKG-----------IATGDVGIAKDGSP 181 (182)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g-~~~~-----------v~~~~~vi~adG~~ 181 (182)
+..++-..|.+.|.+.+++. |++++++++|++|++.+++ +.+. +.++-++|+|+|.+
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 45678889999999999886 8999999999999998888 4332 33345678999864
No 149
>PRK06116 glutathione reductase; Validated
Probab=99.35 E-value=2.5e-11 Score=91.85 Aligned_cols=51 Identities=27% Similarity=0.487 Sum_probs=43.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~ 78 (182)
..+||+||||||+|+++|+.|++ .|.+|+|+|+. ..||...+-++++++.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~------~G~~V~liE~~-~~GG~c~n~gciP~k~l 53 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM------YGAKVALIEAK-RLGGTCVNVGCVPKKLM 53 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecc-chhhhhhccCcchHHHH
Confidence 46899999999999999999999 89999999986 57776666666666554
No 150
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.34 E-value=4.3e-11 Score=90.88 Aligned_cols=56 Identities=43% Similarity=0.550 Sum_probs=47.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~ 82 (182)
+.|||+||||||+|+++|+.+++ .|.+|+|||+....||.....++++++.+....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~------~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~ 57 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQ------LGLKVACVEGRSTLGGTCLNVGCMPSKALLHAS 57 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCceeeeeccCcccccHHHHHHh
Confidence 35899999999999999999999 899999999876788877777888777654443
No 151
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.34 E-value=4.6e-11 Score=89.97 Aligned_cols=135 Identities=22% Similarity=0.314 Sum_probs=74.2
Q ss_pred EECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC--CCCccccccc--c-C---hh------HHhhhhhhHHhcCCCC
Q psy2240 27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--VGGHILSGAV--I-D---PI------ALNELLPDWKDLGAPL 92 (182)
Q Consensus 27 IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~--~~g~~~~~~~--~-~---~~------~~~~~~~~~~~~~~~~ 92 (182)
|||+|++|+++|+.+++ .|.+|+||||.+. .++.+..+.. . . .. .....+.++.......
T Consensus 1 VVG~G~AGl~AA~~Aa~------~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR------AGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR 74 (432)
T ss_pred CCcccHHHHHHHHHHHh------CCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence 79999999999999999 8999999999874 3443332211 0 0 00 0111222222211111
Q ss_pred Cccc--------hhhhHHHHHhhccCCCCCCC--CCCCCCCCccc-cchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240 93 NTPV--------HEDKFAYLTKSKRIGIPILP--GMPMNNHGNYV-VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG 161 (182)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~ 161 (182)
.+.. ..+.+.|+.... ..+.... ..+......+. -....+.+.|.+.+++.|++|+++++|++|..++
T Consensus 75 ~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~ 153 (432)
T TIGR02485 75 TNESLSRLGIGRGSRDLRWAFAHG-VHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEA 153 (432)
T ss_pred CCHHHHHHHHhcchhHHHHHHhCC-ceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC
Confidence 1110 123345554322 2221110 11110000000 1235688899999999999999999999998753
Q ss_pred -CCcEEEE
Q psy2240 162 -DGSVKGI 168 (182)
Q Consensus 162 -~g~~~~v 168 (182)
+++++++
T Consensus 154 ~~g~v~gv 161 (432)
T TIGR02485 154 FDGAHDGP 161 (432)
T ss_pred CCCeEEEE
Confidence 4666553
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.33 E-value=7e-11 Score=89.95 Aligned_cols=55 Identities=45% Similarity=0.622 Sum_probs=46.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
...||++|||||++|+++|+.|++ .|++|+|+|+. ..||.....++++++.+...
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 56 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQ------LGLKTALVEKG-KLGGTCLHKGCIPSKALLHS 56 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHh------CCCeEEEEEcc-CCCcceEcCCcCchHHHHHH
Confidence 457999999999999999999999 89999999996 67887777777776665433
No 153
>PRK06370 mercuric reductase; Validated
Probab=99.32 E-value=2.7e-11 Score=92.03 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=45.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
|+.++||+||||||+|+++|+.|++ .|++|+|+|+. ..||.....++++++.+...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 57 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG------LGMKVALIERG-LLGGTCVNTGCVPTKTLIAS 57 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence 4567999999999999999999999 89999999997 46766666677776655433
No 154
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.32 E-value=2.3e-11 Score=91.95 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=43.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~ 79 (182)
++|||+||||||+|+++|+.|++ .|.+|+|+||. ..||.....++++++.+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~-~~GG~c~~~gciPsk~l~ 52 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE------HGAKALLVEAK-KLGGTCVNVGCVPKKVMW 52 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEeccc-ccccceeccCcCccHHHH
Confidence 35899999999999999999999 89999999996 578777677777665543
No 155
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.32 E-value=1.3e-10 Score=96.50 Aligned_cols=43 Identities=42% Similarity=0.562 Sum_probs=38.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..++||||||+|.+|+++|+.+++ .|.+|+||||.+..+|.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae------~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS------CGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEccCCCCCchh
Confidence 346899999999999999999999 8999999999998887653
No 156
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.32 E-value=1.7e-11 Score=90.34 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=72.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-ccccccChhHHhhhhhh-HHhcCCCCCccchhhhH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVIDPIALNELLPD-WKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 101 (182)
||+|||||++|+++|+.|++. .+|++|++||+.+..++.. ++-...... ..... +... +..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~~~~~~~~---~~~~~~~~~~-------v~~--- 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWSFFDSDLS---DAQHAWLADL-------VQT--- 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccceecccccc---hhhhhhhhhh-------heE---
Confidence 899999999999999999981 1399999999988665421 110000000 00000 0000 000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE---EEeCCEEEecC
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---IATGDVGIAKD 178 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---v~~~~~vi~ad 178 (182)
.| ....+..+... .........+++..|.+.+.+.+.. + ++.+++|+++. +++..+. ...+++||+|+
T Consensus 64 ~W--~~~~v~~~~~~--~~l~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l~dg~~~~A~~VI~A~ 134 (370)
T TIGR01789 64 DW--PGYEVRFPKYR--RKLKTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDLAPGTRINARSVIDCR 134 (370)
T ss_pred eC--CCCEEECcchh--hhcCCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEECCCCEEEeeEEEECC
Confidence 00 00000000000 0011225688899999998877643 3 67788998883 3332221 35678999999
Q ss_pred CC
Q psy2240 179 GS 180 (182)
Q Consensus 179 G~ 180 (182)
|.
T Consensus 135 G~ 136 (370)
T TIGR01789 135 GF 136 (370)
T ss_pred CC
Confidence 94
No 157
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.31 E-value=6.5e-11 Score=84.93 Aligned_cols=86 Identities=28% Similarity=0.364 Sum_probs=59.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
+||+|||||++|+++|..|++ .|.+|+|||+.+ .+|..... .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~-~gg~~~~~------------~------------------- 42 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR------ANLKTLIIEGME-PGGQLTTT------------T------------------- 42 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCCEEEEeccC-CCcceeec------------c-------------------
Confidence 589999999999999999999 899999999886 44321100 0
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG 161 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~ 161 (182)
++ ..++.+ ...+....+...+.+.+++.++++++ ++|+++..++
T Consensus 43 ~~-----~~~~~~---------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~ 86 (300)
T TIGR01292 43 EV-----ENYPGF---------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD 86 (300)
T ss_pred cc-----cccCCC---------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC
Confidence 00 000000 11223346778888888889999998 8999987644
No 158
>PTZ00058 glutathione reductase; Provisional
Probab=99.31 E-value=1.5e-10 Score=89.32 Aligned_cols=55 Identities=35% Similarity=0.524 Sum_probs=46.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
..+||++|||||++|.++|+.+++ .|.+|+|||+. ..||...+-++++++.+...
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~------~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~ 100 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAAR------NKAKVALVEKD-YLGGTCVNVGCVPKKIMFNA 100 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHH------cCCeEEEEecc-cccccccccCCCCCchhhhh
Confidence 457899999999999999999999 89999999997 57887777788877665443
No 159
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.4e-11 Score=90.55 Aligned_cols=125 Identities=24% Similarity=0.353 Sum_probs=74.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE 98 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
...+||+|||||++|+++|++|.+ .|.+ ++||||+...||.++- .-.+......+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~------~g~~~~~i~Ek~~~~Gg~W~~------------------~ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ------AGVPDFVIFEKRDDVGGTWRY------------------NRYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH------cCCCcEEEEEccCCcCCcchh------------------ccCCceEECCc
Confidence 456799999999999999999999 8988 9999999988875431 10010111000
Q ss_pred hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC--cEEecCCccceeEEcCCCcEEEE--------
Q psy2240 99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGI-------- 168 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g--v~i~~~~~v~~i~~~~~g~~~~v-------- 168 (182)
. +. ..++.. +.. ..........+..++.+.+++++ ..|.+++.|+.+..++++....|
T Consensus 62 ~---~~-----~~~~~~---p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~ 129 (443)
T COG2072 62 K---WL-----LGFPFL---PFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG 129 (443)
T ss_pred h---he-----eccCCC---ccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee
Confidence 0 00 011111 111 00111222236777777777766 45777788877777666533322
Q ss_pred -EeCCEEEecCCC
Q psy2240 169 -ATGDVGIAKDGS 180 (182)
Q Consensus 169 -~~~~~vi~adG~ 180 (182)
...+.||.|.|.
T Consensus 130 ~~~a~~vV~ATG~ 142 (443)
T COG2072 130 ELTADFVVVATGH 142 (443)
T ss_pred eEecCEEEEeecC
Confidence 235667777665
No 160
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.29 E-value=1.1e-10 Score=87.44 Aligned_cols=58 Identities=45% Similarity=0.566 Sum_probs=51.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (182)
+.+||++|||+|++|..+|..+++ .|.+|+++|+....||...+-+|++++.+.....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~------~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~ 59 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ------LGLKVALVEKGERLGGTCLNVGCIPSKALLHAAE 59 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh------CCCCEEEEeecCCcCceEEeeCccccHHHHHHHH
Confidence 467999999999999999999999 8999999999987888888889998887765543
No 161
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.29 E-value=1.5e-10 Score=88.99 Aligned_cols=154 Identities=25% Similarity=0.254 Sum_probs=87.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh----------HHhhhhhhHHhc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI----------ALNELLPDWKDL 88 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~----------~~~~~~~~~~~~ 88 (182)
..++||+|||||.+||.+|+.+++ .|++|+|+||.+..++.+. +.+.+... ....++.+....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~------~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg 77 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAE------AGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG 77 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHh------cCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence 467899999999999999999999 8999999999998776553 22221110 111111111112
Q ss_pred CCCCCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCC---------ccccchHHHHHHHHHHHHH-cCcEE
Q psy2240 89 GAPLNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHG---------NYVVRLGHVVKWLGEQAEA-MGVEI 148 (182)
Q Consensus 89 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~l~~~l~~~~~~-~gv~i 148 (182)
...+.+.. .+..+.++..... .+....+. .....+ ...-..+.+...|.+.+.+ .++++
T Consensus 78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~-~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~ 156 (562)
T COG1053 78 GDGLGDQDAVEAFADEAPEAVDELEKWGV-PFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEI 156 (562)
T ss_pred cCCcCCHHHHHHHHHhhHHHHHHHHHhCC-CcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchh
Confidence 22222211 1122333332221 11111110 000000 1122345788899999887 66789
Q ss_pred ecCCccceeEEcCCCcEEEEE-------------eCCEEEecCCC
Q psy2240 149 YPGIPASEVLYHGDGSVKGIA-------------TGDVGIAKDGS 180 (182)
Q Consensus 149 ~~~~~v~~i~~~~~g~~~~v~-------------~~~~vi~adG~ 180 (182)
+.++.++++..++++.+.|+. ...+|++++|.
T Consensus 157 ~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~ 201 (562)
T COG1053 157 FDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGA 201 (562)
T ss_pred hhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCc
Confidence 999999999876665455532 23667777775
No 162
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.28 E-value=3.7e-11 Score=92.17 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=78.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccc---ccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA---VIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
+||+|||||++|+.+|..+++ .|.+|+|||+.....+...+.. ......+.+.++. .+ .
T Consensus 1 yDViVIGaG~AGl~aA~ala~------~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEida---LG---------G 62 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR------MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDA---LG---------G 62 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH------CCCCEEEEecccccccCCCccccccccccchhhhhhhc---cc---------c
Confidence 699999999999999999999 8999999999754332221111 1111111111111 00 0
Q ss_pred hHHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEEe------
Q psy2240 100 KFAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIAT------ 170 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~~------ 170 (182)
.+..........+..+. ..+........+++..+.+.|.+.+++. ++.++.+ .|+++..++++.+.+|.+
T Consensus 63 ~~~~~~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I 141 (617)
T TIGR00136 63 LMGKAADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKF 141 (617)
T ss_pred hHHHHHHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEE
Confidence 01111111111111110 0111111135789999999999999886 6788754 777876544556665543
Q ss_pred -CCEEEecCCC
Q psy2240 171 -GDVGIAKDGS 180 (182)
Q Consensus 171 -~~~vi~adG~ 180 (182)
++.||.|.|.
T Consensus 142 ~Ad~VILATGt 152 (617)
T TIGR00136 142 RAKAVIITTGT 152 (617)
T ss_pred ECCEEEEccCc
Confidence 3667777664
No 163
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=1.7e-10 Score=93.73 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=34.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++||+|||||.+|+++|+.+++ .|.+|+||||.+.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~------~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAE------HGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHH------CCCeEEEEecccc
Confidence 457899999999999999999999 8999999999975
No 164
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.26 E-value=1.7e-10 Score=87.09 Aligned_cols=51 Identities=29% Similarity=0.400 Sum_probs=40.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccccccccChhH
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSGAVIDPIA 77 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~~~~~~~~~~ 77 (182)
+.+||+|||||++|+++|..|++ .|.+|+|+||.+. .||...+.++++...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~------~g~~V~liE~~~~~~GG~c~~~gciP~k~ 53 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS------AGKKVALVEESKAMYGGTCINIGCIPTKT 53 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecCCcccceeeecCccccchH
Confidence 36899999999999999999999 8999999999864 466544455554443
No 165
>KOG2844|consensus
Probab=99.25 E-value=1.5e-10 Score=88.27 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=46.3
Q ss_pred CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCC
Q psy2240 120 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDG 179 (182)
Q Consensus 120 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG 179 (182)
.+.++...+++..+.++|...+++.|+.|++++.|++|....+ ...+|.+ +..+|.|.|
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~G~iet~~~VNaaG 240 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPHGSIETECVVNAAG 240 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccCcceecceEEechh
Confidence 4566677899999999999999999999999999999976333 3335544 466777766
No 166
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.25 E-value=2.1e-11 Score=67.72 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=32.5
Q ss_pred EECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 27 IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
|||||++|+++|+.|++ .|.+|+|+|+.+.++|...
T Consensus 1 IiGaG~sGl~aA~~L~~------~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK------AGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHH------TTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHH------CCCcEEEEecCcccCccee
Confidence 89999999999999999 8999999999999987654
No 167
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.24 E-value=1.6e-10 Score=88.08 Aligned_cols=51 Identities=39% Similarity=0.553 Sum_probs=39.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC------CCCCCccccccccChh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA------AEVGGHILSGAVIDPI 76 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~------~~~~g~~~~~~~~~~~ 76 (182)
...+|++|||||++|+++|+.+++ .|.+|+|||+. ...||...+.++++..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~------~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k 58 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQ------LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSK 58 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHh------CCCeEEEEecccCCCCCCCcCCccccccccHHH
Confidence 346899999999999999999999 89999999982 3455555444554433
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.24 E-value=2e-10 Score=88.98 Aligned_cols=38 Identities=39% Similarity=0.851 Sum_probs=33.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g 65 (182)
..+||+|||||++|+++|+.|++ +|++|+|||+. ..+|
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar------~g~~V~liE~~-~~GG 40 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR------AKLDTLIIEKD-DFGG 40 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecC-CCCc
Confidence 35899999999999999999999 89999999986 3444
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.23 E-value=2.9e-10 Score=87.49 Aligned_cols=106 Identities=27% Similarity=0.329 Sum_probs=70.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..+||+|||||++|+++|..|++ .|++|+|+|+. .||.... ..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~------~G~~v~li~~~--~GG~~~~-----------------~~------------ 252 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR------KGIRTGIVAER--FGGQVLD-----------------TM------------ 252 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCeeec-----------------cC------------
Confidence 46899999999999999999999 89999999763 4542210 00
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI 175 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi 175 (182)
.++.+.. .......++.+.|.+.+++.|++++.+++|+++..+++.+.+. ....+.+|
T Consensus 253 ----------~~~~~~~-------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vV 315 (517)
T PRK15317 253 ----------GIENFIS-------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVI 315 (517)
T ss_pred ----------cccccCC-------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEE
Confidence 0000000 0012345788899999999999999999999997744332221 22345566
Q ss_pred ecCCC
Q psy2240 176 AKDGS 180 (182)
Q Consensus 176 ~adG~ 180 (182)
.|.|+
T Consensus 316 iAtG~ 320 (517)
T PRK15317 316 LATGA 320 (517)
T ss_pred ECCCC
Confidence 66664
No 170
>PLN02507 glutathione reductase
Probab=99.23 E-value=5.9e-10 Score=85.32 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=43.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec---------CCCCCCccccccccChhHHhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK---------AAEVGGHILSGAVIDPIALNE 80 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~---------~~~~~g~~~~~~~~~~~~~~~ 80 (182)
..||++|||||++|+.+|..+++ .|++|+|+|+ ....||....-++++++.+..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~------~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~ 86 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY 86 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHH
Confidence 46899999999999999999999 8999999996 234666665666766666533
No 171
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.22 E-value=7.2e-10 Score=84.34 Aligned_cols=51 Identities=45% Similarity=0.565 Sum_probs=41.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~ 78 (182)
.++||+|||||++|+++|+.|++ .|.+|+|||+. ..||.....++++.+.+
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l 53 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ------LGLKTAVVEKK-YWGGVCLNVGCIPSKAL 53 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-CCCCceecCCccccHHH
Confidence 45899999999999999999999 89999999986 46766666666654443
No 172
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=80.09 Aligned_cols=38 Identities=42% Similarity=0.674 Sum_probs=35.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+|+|||+|++|+++|+.|+. .|.+|+|+||+.-.+|+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~------aG~~vtV~eKg~GvGGRl 40 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE------AGREVTVFEKGRGVGGRL 40 (331)
T ss_pred cEEEEccchHHHHHHHHHHh------cCcEEEEEEcCCCcccch
Confidence 69999999999999999999 999999999998777754
No 173
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.21 E-value=3.6e-10 Score=83.50 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=65.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc---------ChhHHhhhhhhHHhcCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI---------DPIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 93 (182)
.||+|||||++|+.+|+.|++ .|++|+|+|+.+...........+ ....+....+.|.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr------~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~------- 69 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK------RGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLK------- 69 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchH-------
Confidence 489999999999999999999 899999999887553211100000 0111111122222
Q ss_pred ccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeE
Q psy2240 94 TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVL 158 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~ 158 (182)
..+..+. ...+...........+...+++..+.+.|.+.+++ .+++++ ..+|+++.
T Consensus 70 -----~em~~lg---sl~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 70 -----EEMRRLG---SLIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -----HHHHHhc---chheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 1111110 00000000000111113467888899999999876 479988 56999985
No 174
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4e-10 Score=80.53 Aligned_cols=107 Identities=29% Similarity=0.361 Sum_probs=66.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
+.+||+||||||+|+++|+.+++ ++++ ++|+|+.. ++|... .+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r------~~l~~~li~~~~~-~gg~~~---------------~~-------------- 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGE-PGGQLT---------------KT-------------- 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH------cCCCcEEEEecCC-cCCccc---------------cc--------------
Confidence 46899999999999999999999 8998 66666653 332110 00
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E---EEeCCEEE
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G---IATGDVGI 175 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~---v~~~~~vi 175 (182)
. ....+ |-+ ...+....|.+.+.+.+...++++.. ..|.+++..++...+ + ...++.||
T Consensus 46 ------~----~veny---pg~---~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~~~ak~vI 108 (305)
T COG0492 46 ------T----DVENY---PGF---PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGTYEAKAVI 108 (305)
T ss_pred ------e----eecCC---CCC---ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCeEEEeEEE
Confidence 0 00001 111 22244568888999999899999888 677777653321111 1 23345555
Q ss_pred ecCCC
Q psy2240 176 AKDGS 180 (182)
Q Consensus 176 ~adG~ 180 (182)
-|.|+
T Consensus 109 iAtG~ 113 (305)
T COG0492 109 IATGA 113 (305)
T ss_pred ECcCC
Confidence 55554
No 175
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.20 E-value=1.1e-09 Score=83.35 Aligned_cols=49 Identities=51% Similarity=0.706 Sum_probs=41.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA 77 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~ 77 (182)
+|||+|||||++|+++|+.|++ .|.+|+|||+ +..||...+.++++...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~------~G~~v~lie~-~~~GG~~~~~gc~Psk~ 49 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ------LGLKVALVEK-EYLGGTCLNVGCIPTKA 49 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh------CCCeEEEEec-CCCCCceeecCccchHH
Confidence 3799999999999999999999 8999999999 67788766556655443
No 176
>PRK14694 putative mercuric reductase; Provisional
Probab=99.19 E-value=2.9e-10 Score=86.52 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=45.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
...+||+|||||++|+++|+.|++ .|++|+|||+. ..||...+.++++++.+.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~------~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~ 58 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATE------RGARVTLIERG-TIGGTCVNIGCVPSKIMIRA 58 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEEcc-ccccceecCCccccHHHHHH
Confidence 356899999999999999999999 89999999997 57777666677766655433
No 177
>PLN02546 glutathione reductase
Probab=99.18 E-value=6.6e-10 Score=85.77 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=44.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC---------CCCCCccccccccChhHHhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA---------AEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~---------~~~~g~~~~~~~~~~~~~~~~ 81 (182)
.+|||+|||+|++|..+|..+++ .|.+|+|+|+. ...||...+-+|++.+.+...
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~a 141 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN------FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYA 141 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHH
Confidence 45899999999999999999999 89999999962 235666667778877766443
No 178
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.16 E-value=5.8e-10 Score=85.38 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=39.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--------CCCCccccccccChhH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--------EVGGHILSGAVIDPIA 77 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--------~~~g~~~~~~~~~~~~ 77 (182)
.||++||||||+|+++|+.|++ .|.+|+|||+.. ..||...+-++++.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~------~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~ 62 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA------HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKL 62 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh------CCCeEEEEeccCCCCccccccccceeccccccchHH
Confidence 5899999999999999999999 899999999732 2555544555555443
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.16 E-value=9.9e-10 Score=84.47 Aligned_cols=88 Identities=26% Similarity=0.415 Sum_probs=60.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
...+||+|||||++|+++|+.|++ .|++|+|||. ..||.... . .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~------~G~~v~li~~--~~GG~~~~-----------------~-----------~ 253 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMVAE--RIGGQVKD-----------------T-----------V 253 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEec--CCCCcccc-----------------C-----------c
Confidence 345899999999999999999999 8999999975 34442210 0 0
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG 161 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~ 161 (182)
.+. .+... + .....++.+.+.+.+++.|++++.+++|+++..++
T Consensus 254 ~~~--------~~~~~---~-------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~ 297 (515)
T TIGR03140 254 GIE--------NLISV---P-------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED 297 (515)
T ss_pred Ccc--------ccccc---C-------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC
Confidence 000 00000 0 01234678888888888899999999999987644
No 180
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.16 E-value=8.8e-10 Score=81.65 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=86.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-cccccc----Ch-hHHhhhhhhHHhcCCCCCccch
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVI----DP-IALNELLPDWKDLGAPLNTPVH 97 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (182)
||+|||+|++||++|+.|++ . .+|+||-|.+...+++ ++.+.+ .. +.......+-...+..+++...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~------~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~a 81 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP------S-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEA 81 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC------C-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHH
Confidence 89999999999999999987 4 8999999998664333 233332 11 2233333333333334443321
Q ss_pred --------hhhHHHHHhhccCCCCCCC--CCCCCCCCcc----c-----cchHHHHHHHHHHHHH-cCcEEecCCcccee
Q psy2240 98 --------EDKFAYLTKSKRIGIPILP--GMPMNNHGNY----V-----VRLGHVVKWLGEQAEA-MGVEIYPGIPASEV 157 (182)
Q Consensus 98 --------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~-----~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i 157 (182)
...+.|+...+ ..++... .+.....++. . -....+...|.+++++ ++++++.++.+.++
T Consensus 82 V~~iv~~~~~ai~~Li~~G-v~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~l 160 (518)
T COG0029 82 VEFIVSEAPEAIEWLIDLG-VPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDL 160 (518)
T ss_pred HHHHHHhHHHHHHHHHHcC-CCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhh
Confidence 23344443322 2222111 0111111111 1 2346789999999977 78999999999998
Q ss_pred EEcCCCcEEEEE------------eCCEEEecCCCC
Q psy2240 158 LYHGDGSVKGIA------------TGDVGIAKDGSP 181 (182)
Q Consensus 158 ~~~~~g~~~~v~------------~~~~vi~adG~~ 181 (182)
..+++..+.|+. +..+|++++|..
T Consensus 161 i~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 161 IIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred hhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 874442332432 346677777753
No 181
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.14 E-value=2e-09 Score=61.99 Aligned_cols=77 Identities=29% Similarity=0.373 Sum_probs=61.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (182)
.++|||||+.|+-+|..|++ .|.+|++|++.+.+.. .
T Consensus 1 ~vvViGgG~ig~E~A~~l~~------~g~~vtli~~~~~~~~-~------------------------------------ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE------LGKEVTLIERSDRLLP-G------------------------------------ 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEEESSSSSST-T------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHH------hCcEEEEEeccchhhh-h------------------------------------
Confidence 38999999999999999999 8999999999875430 0
Q ss_pred HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe
Q psy2240 104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT 170 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~ 170 (182)
+ ...+...+.+.+++.|+++++++.+++++.++++ +. |..
T Consensus 38 --------~-----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 38 --------F-----------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp --------S-----------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred --------c-----------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 0 0145667777788889999999999999987777 44 443
No 182
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.14 E-value=1.7e-09 Score=82.23 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=43.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
|||+||||||+|+++|+.|++ .|++|+|+|+.+ .||...+-++++++.+...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~------~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~ 52 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE------LGASVAMVERGP-LGGTCVNVGCVPSKMLLRA 52 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence 699999999999999999999 899999999976 6776666677766665443
No 183
>PRK14727 putative mercuric reductase; Provisional
Probab=99.14 E-value=2.6e-09 Score=81.55 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=47.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~ 80 (182)
...+|++|||+|++|+++|..|++ .|.+|+|+|+....||...+.++++++.+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~------~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~ 68 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE------HGARVTIIEGADVIGGCCVNVGCVPSKILIR 68 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCcceeEeccccccccHHHHH
Confidence 456899999999999999999999 8999999999877888877777777666543
No 184
>KOG0042|consensus
Probab=99.13 E-value=3.8e-11 Score=89.37 Aligned_cols=42 Identities=33% Similarity=0.505 Sum_probs=38.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.++||+|||||.+|..+|+..+. +|++|.++|++.+..|.++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~T------RGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAAT------RGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhc------ccceeEEEecccccCCccc
Confidence 35899999999999999999998 9999999999998887665
No 185
>KOG2404|consensus
Probab=99.12 E-value=9.2e-10 Score=77.55 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=83.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc--ccc-ChhHHhhhhhhHHhcCCCC--------
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG--AVI-DPIALNELLPDWKDLGAPL-------- 92 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~~~~-------- 92 (182)
.++|||+|.+||+++..+-. .|-.|+++|+....||++..+ +.. .....++.++..+.....+
T Consensus 11 pvvVIGgGLAGLsasn~iin------~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN------KGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHh------cCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 69999999999999999988 566699999999999876421 111 1111111111000000000
Q ss_pred ----------CccchhhhHHHHHhhccCCCCCCC---C--CCCC-CCCccccchHHHHHHHHHHHHHc------CcEEec
Q psy2240 93 ----------NTPVHEDKFAYLTKSKRIGIPILP---G--MPMN-NHGNYVVRLGHVVKWLGEQAEAM------GVEIYP 150 (182)
Q Consensus 93 ----------~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~l~~~l~~~~~~~------gv~i~~ 150 (182)
........+.|+....++.+..+. . .|.. +...-..+...+...|...+++. -++|..
T Consensus 85 sk~~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~ 164 (477)
T KOG2404|consen 85 SKGVPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILL 164 (477)
T ss_pred cCCcHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhh
Confidence 001122344555443333222111 1 1111 11122334457777777776552 288999
Q ss_pred CCccceeEEcCCCcEEEEEe------------CCEEEecCCCC
Q psy2240 151 GIPASEVLYHGDGSVKGIAT------------GDVGIAKDGSP 181 (182)
Q Consensus 151 ~~~v~~i~~~~~g~~~~v~~------------~~~vi~adG~~ 181 (182)
+++|++|.. .+|.+.+|.. ..+|.+++|-.
T Consensus 165 nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 165 NSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred cceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 999999985 6677777543 35666666643
No 186
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=1.2e-10 Score=88.85 Aligned_cols=42 Identities=43% Similarity=0.631 Sum_probs=38.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+.+||+|||||+.||++|..|++ +|++|+|+||...+||..+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~------~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh------CCCEEEEEEecCCCCcceE
Confidence 45799999999999999999999 9999999999999888553
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=99.10 E-value=4.4e-09 Score=81.88 Aligned_cols=54 Identities=24% Similarity=0.435 Sum_probs=45.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~ 81 (182)
..+|++|||||++|+++|+.|++ .|++|+|||+. ..||...+-++++++.+...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~------~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE------QGARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 35899999999999999999999 89999999997 67887766777766665433
No 188
>PRK09897 hypothetical protein; Provisional
Probab=99.09 E-value=5.7e-09 Score=80.02 Aligned_cols=38 Identities=34% Similarity=0.596 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~ 64 (182)
.+|+|||||++|+++|.+|.+. +..++|+|+|+...+|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCC
Confidence 3799999999999999999872 1346999999987666
No 189
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.09 E-value=1.5e-09 Score=82.78 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=47.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecC--------CCCCCccccccccChhHHhhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKA--------AEVGGHILSGAVIDPIALNELL 82 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~--------~~~~g~~~~~~~~~~~~~~~~~ 82 (182)
.+||++|||||++|..+|+.+++ . |.+|+|||+. ...||...+-++++++.+.+..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~------~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a 66 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT------LYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGA 66 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH------hcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHH
Confidence 46899999999999999999999 6 8999999984 3578877788888888775553
No 190
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.09 E-value=5.1e-09 Score=79.95 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=43.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--------CCCCccccccccChhHHhhh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--------EVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--------~~~g~~~~~~~~~~~~~~~~ 81 (182)
.||++|||+|++|..+|+.+++ .|.+|++||+.. ..||...+-++++++.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~------~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~ 63 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD------YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQA 63 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHH
Confidence 5899999999999999999999 899999999742 35665566677777665443
No 191
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=8.3e-10 Score=82.68 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..+||+|||||.+|+-+|++.+| .|.+++++--....-|..++...+.-...-.+....+..+ ..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR------mG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALG---------G~ 67 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR------MGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALG---------GL 67 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc------cCCeEEEEEcCCCceeecccccccCCcccceeEEeehhcc---------ch
Confidence 45899999999999999999999 8999999988765444333322211100000011111111 11
Q ss_pred HHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEeC------
Q psy2240 101 FAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATG------ 171 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~~------ 171 (182)
+.........++..+. ..|.-+....++++..+.+++.+.++. .+..++. ..|+++..+++..++||.+.
T Consensus 68 Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~ 146 (621)
T COG0445 68 MGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFH 146 (621)
T ss_pred HHHhhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeee
Confidence 2222222223332221 122222224567788888888888876 4677765 47888876343357776653
Q ss_pred -CEEEecCCC
Q psy2240 172 -DVGIAKDGS 180 (182)
Q Consensus 172 -~~vi~adG~ 180 (182)
+.||-+.|.
T Consensus 147 a~aVVlTTGT 156 (621)
T COG0445 147 AKAVVLTTGT 156 (621)
T ss_pred cCEEEEeecc
Confidence 556655553
No 192
>KOG0029|consensus
Probab=99.08 E-value=2.7e-10 Score=86.48 Aligned_cols=43 Identities=33% Similarity=0.568 Sum_probs=38.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.+..+|+|||||++|+++|.+|.+ .|++|+|||++...||+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~------~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD------FGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH------cCCceEEEeccCCcCceeE
Confidence 345689999999999999999999 8999999999999998653
No 193
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.08 E-value=2.4e-10 Score=83.24 Aligned_cols=141 Identities=23% Similarity=0.296 Sum_probs=70.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE 98 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (182)
.+|+++||.||++|++|..|... ...+++.|||.+... |....+..+....+ ..... ..++-.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~-----~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl-------~Dlvt-~~~P~s~ 68 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH-----GDLKALFLERRPSFSWHPGMLLPGARMQVSFL-------KDLVT-LRDPTSP 68 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----H---EEEEES-SS--TTGGG--SS-B-SS-TT-------SSSST-TT-TTST
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc-----CCCCEEEEecCCCCCcCCccCCCCCccccccc-------cccCc-CcCCCCc
Confidence 47999999999999999999984 258999999987532 11112222221111 11110 1111111
Q ss_pred hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC----cEE--------
Q psy2240 99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG----SVK-------- 166 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g----~~~-------- 166 (182)
..+..+......-.+ +...+...+.|.++.+++...+++.+-.+.++.+|++|+...++ ..+
T Consensus 69 ~sflnYL~~~~rl~~------f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~ 142 (341)
T PF13434_consen 69 FSFLNYLHEHGRLYE------FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD 142 (341)
T ss_dssp TSHHHHHHHTT-HHH------HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-
T ss_pred ccHHHHHHHcCChhh------hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC
Confidence 122112111110000 01111445678899999999998888669999999999875543 111
Q ss_pred --EEEeCCEEEecCCCC
Q psy2240 167 --GIATGDVGIAKDGSP 181 (182)
Q Consensus 167 --~v~~~~~vi~adG~~ 181 (182)
.+.++++||+.++.|
T Consensus 143 ~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 143 GETYRARNVVLATGGQP 159 (341)
T ss_dssp EEEEEESEEEE----EE
T ss_pred eeEEEeCeEEECcCCCC
Confidence 134567888887665
No 194
>PRK10262 thioredoxin reductase; Provisional
Probab=99.07 E-value=5.2e-09 Score=76.00 Aligned_cols=38 Identities=34% Similarity=0.620 Sum_probs=33.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g 65 (182)
..+||+||||||+|+++|..|++ .|.++++||+. ..+|
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~------~g~~~~~ie~~-~~gg 42 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGM-EKGG 42 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH------CCCCeEEEEee-cCCC
Confidence 45799999999999999999999 89999999965 4444
No 195
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.06 E-value=1.8e-08 Score=65.56 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred EEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccch-hhhHHHH
Q psy2240 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVH-EDKFAYL 104 (182)
Q Consensus 26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 104 (182)
+|||+|++|++++.+|.+.. ......+|+|+|+.+...|....... ....+... ............ .....|+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~G~G~~~~~~~-~~~~llN~----~a~~~s~~~~~~~~~f~~Wl 74 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPFGAGGAYRPDQ-PPSHLLNT----PADQMSLFPDDPGDDFVDWL 74 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCccccccCCCCC-ChHHhhcc----cccccccccccCCCCHHHHH
Confidence 59999999999999999843 11246899999997652132221110 11111100 000000111111 2344455
Q ss_pred HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH------cCcEEe-cCCccceeEEcCCCcEEE-----EEeCC
Q psy2240 105 TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKG-----IATGD 172 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~gv~i~-~~~~v~~i~~~~~g~~~~-----v~~~~ 172 (182)
....... .........++|..+-++|.+..+. .+++|. ...+|++|...+++..+. ....+
T Consensus 75 ~~~~~~~-------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d 147 (156)
T PF13454_consen 75 RANGADE-------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD 147 (156)
T ss_pred HhcCccc-------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence 4443200 0011113345555555555554333 244443 356999998866665331 23457
Q ss_pred EEEecCCCC
Q psy2240 173 VGIAKDGSP 181 (182)
Q Consensus 173 ~vi~adG~~ 181 (182)
.||.|.|++
T Consensus 148 ~VvLa~Gh~ 156 (156)
T PF13454_consen 148 AVVLATGHQ 156 (156)
T ss_pred EEEECCCCC
Confidence 788888875
No 196
>PRK07208 hypothetical protein; Provisional
Probab=99.03 E-value=3.9e-10 Score=86.08 Aligned_cols=42 Identities=38% Similarity=0.617 Sum_probs=38.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+...||+|||||++||++|+.|++ +|++|+|+|+.+..||..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~------~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcee
Confidence 456799999999999999999999 899999999999988864
No 197
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.03 E-value=5.6e-10 Score=84.41 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=39.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccccccccC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSGAVID 74 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~~~~~~~ 74 (182)
..|||+|||||++|+++|+.|++ +|.+|+|||+.+. .||...+.+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~------~g~~V~lie~~~~~~GG~~~~~gcip 50 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK------AGWRVALIEQSNAMYGGTCINIGCIP 50 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH------CCCeEEEEcCCCCccceeEeeccccc
Confidence 46899999999999999999999 8999999999863 566554444443
No 198
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.02 E-value=1.8e-08 Score=76.78 Aligned_cols=49 Identities=31% Similarity=0.540 Sum_probs=42.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~ 79 (182)
|++|||+|++|+.+|..+++ .|.+|+|+|+.+ .||.....++++.+.+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~------~g~~v~~~e~~~-~gG~c~~~gciPsK~l~ 51 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ------LGADVTVIERDG-LGGAAVLTDCVPSKTLI 51 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh------CCCeEEEEEccC-CCCcccccCCcchHHHH
Confidence 79999999999999999999 899999999975 67777677777666554
No 199
>KOG2852|consensus
Probab=99.01 E-value=1.9e-09 Score=74.83 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=73.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc-----Chh-------HHhhhhhhHHh--
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI-----DPI-------ALNELLPDWKD-- 87 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~-----~~~-------~~~~~~~~~~~-- 87 (182)
...|+|||||+.|+.+|+.|++.-..+.--+.|+++|+....++++..++.+ .++ ...++...+..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 3679999999999999999999211111117899999998776655422211 110 00111111111
Q ss_pred -----cCCCCCc-c------------chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEE
Q psy2240 88 -----LGAPLNT-P------------VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEI 148 (182)
Q Consensus 88 -----~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i 148 (182)
.++...+ . ..++.+.|+..........+. ......++|+..|.+.+...+++.+ |++
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG----~t~ttaqvhP~lFc~~i~sea~k~~~V~l 165 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIG----STNTTAQVHPYLFCHFILSEAEKRGGVKL 165 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheecc----CCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence 1111000 0 011223333322111111111 1223568999999999999998865 999
Q ss_pred ecCCccceeEEcCCCc
Q psy2240 149 YPGIPASEVLYHGDGS 164 (182)
Q Consensus 149 ~~~~~v~~i~~~~~g~ 164 (182)
.++ .|+++. ++.++
T Consensus 166 v~G-kv~ev~-dEk~r 179 (380)
T KOG2852|consen 166 VFG-KVKEVS-DEKHR 179 (380)
T ss_pred EEe-eeEEee-ccccc
Confidence 887 666665 34443
No 200
>KOG1335|consensus
Probab=99.00 E-value=3.7e-09 Score=76.07 Aligned_cols=58 Identities=40% Similarity=0.498 Sum_probs=50.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~ 84 (182)
.++|++|||+||.|-.+|+..++ .|++++++|++...||...+-++++++.++..-+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ------lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~ 95 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ------LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHL 95 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH------hcceeEEEeccCccCceeeeccccccHHHhhhhHH
Confidence 46999999999999999999999 89999999999999998888888888776544333
No 201
>KOG2853|consensus
Probab=98.99 E-value=1.9e-08 Score=71.64 Aligned_cols=42 Identities=36% Similarity=0.526 Sum_probs=35.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
...+||+|||||..|+++|+.|.+. .+..|++|+|+||+.--
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer--~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKER--ARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHH--hhcCCceEEEEeccCcc
Confidence 4578999999999999999999873 33357999999999743
No 202
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.99 E-value=1.3e-08 Score=83.66 Aligned_cols=40 Identities=43% Similarity=0.731 Sum_probs=36.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
..+||+||||||+|+++|+.|++ .|++|+|+|+.+..+|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar------~G~~V~liD~~~~~GG~ 201 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR------AGARVILVDEQPEAGGS 201 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCCCe
Confidence 35799999999999999999999 89999999999887753
No 203
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.98 E-value=9.1e-09 Score=76.57 Aligned_cols=36 Identities=39% Similarity=0.446 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~ 64 (182)
+||+|||||++|+.+|+.|++ .|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr------~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ------AGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh------CCCcEEEEecccccc
Confidence 479999999999999999999 899999999887643
No 204
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.97 E-value=1.6e-09 Score=82.35 Aligned_cols=49 Identities=39% Similarity=0.590 Sum_probs=40.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI 76 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~ 76 (182)
..|||+|||||++|+++|..|++ .|.+|+|||+ ...||....-++++++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~------~g~~v~lie~-~~~GG~~~~~gc~psk 50 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK------LGKKVALIEK-GPLGGTCLNVGCIPSK 50 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH------CCCeEEEEeC-CccccceeccceeeHH
Confidence 45899999999999999999999 8999999999 4567765555555443
No 205
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.97 E-value=4.7e-09 Score=74.57 Aligned_cols=36 Identities=36% Similarity=0.579 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.++|++|||+|.+||.+|.+|+. +|.+|+++|+...
T Consensus 4 ~~~dvivvgaglaglvaa~elA~------aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD------AGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh------cCceEEEEccccc
Confidence 46899999999999999999999 9999999998864
No 206
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.95 E-value=2.1e-08 Score=76.30 Aligned_cols=52 Identities=37% Similarity=0.597 Sum_probs=43.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhh
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~ 82 (182)
+++|||||++|+++|..|++ .|.+|+||||.+ .||...+.++++++.+.+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~------~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a 53 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ------NGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESA 53 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCcEEEEECCc-ccccCCCCccccchHHHHHH
Confidence 69999999999999999999 899999999975 67776677788777665443
No 207
>PRK12831 putative oxidoreductase; Provisional
Probab=98.94 E-value=4.2e-09 Score=80.01 Aligned_cols=40 Identities=33% Similarity=0.518 Sum_probs=35.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
...||+|||||++|+++|+.|++ .|++|+|+|+.+.+||.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK------MGYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCCe
Confidence 45699999999999999999999 89999999998877653
No 208
>PLN02268 probable polyamine oxidase
Probab=98.93 E-value=1.5e-09 Score=81.93 Aligned_cols=39 Identities=41% Similarity=0.740 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+|+|||||++||++|+.|.+ .|++|+|||+++..||+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~------~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD------ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCceee
Confidence 79999999999999999999 8999999999999998754
No 209
>PLN02576 protoporphyrinogen oxidase
Probab=98.93 E-value=1.5e-09 Score=83.26 Aligned_cols=42 Identities=40% Similarity=0.618 Sum_probs=37.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~ 68 (182)
...||+|||||++||++|+.|++ . |.+|+|+|+.+..||...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~------~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS------KHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------hcCCCEEEEecCCCCCCcee
Confidence 34589999999999999999999 7 899999999999998653
No 210
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.93 E-value=1.6e-09 Score=83.01 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=37.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+||+|||+|++|+++|..|++ +|.+|+||||+..+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~------~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV------KGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH------CCCcEEEEECCCCCCCcee
Confidence 589999999999999999999 8999999999998887654
No 211
>KOG3855|consensus
Probab=98.92 E-value=1.5e-08 Score=73.62 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC--CCCCCccc--------cccccChhHHhhhhhhHHhcCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA--AEVGGHIL--------SGAVIDPIALNELLPDWKDLGAP 91 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~--~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
.+||+|||||++|++.|..|.. ++....++|.++|.. +..+.--. +.....+..+.+.++.|......
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~s--np~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGS--NPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhcc--CCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 6899999999999999999985 555556799999998 33322111 11122333445556667665433
Q ss_pred CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHH--HH-HHcCcEEecCCccceeEE------cCC
Q psy2240 92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGE--QA-EAMGVEIYPGIPASEVLY------HGD 162 (182)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~~gv~i~~~~~v~~i~~------~~~ 162 (182)
...++.... .++....-.+.. ...+.....++.+....+...|.. .. +..++++.+.+++.++.. ++.
T Consensus 114 R~~~~~~~~--v~Ds~s~a~I~~-~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 114 RYQKFSRML--VWDSCSAALILF-DHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred cccccccee--eecccchhhhhh-ccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 333322110 000000000000 000111112566666677777773 33 235799999999887755 233
Q ss_pred CcEEE-------EEeCCEEEecCCC
Q psy2240 163 GSVKG-------IATGDVGIAKDGS 180 (182)
Q Consensus 163 g~~~~-------v~~~~~vi~adG~ 180 (182)
+-+.. ....+++|+|||.
T Consensus 191 ~~~~~i~l~dg~~~~~~LLigAdg~ 215 (481)
T KOG3855|consen 191 GMWFHITLTDGINFATDLLIGADGF 215 (481)
T ss_pred cceEEEEeccCceeeeceeeccccc
Confidence 33332 3456999999996
No 212
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.92 E-value=1.5e-09 Score=82.33 Aligned_cols=39 Identities=41% Similarity=0.742 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCccc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~~ 68 (182)
+|+|||||++||++|+.|++ .| .+|+|+|+++..||...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~------~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK------KGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH------hCCCCCEEEEEcCCCCcceEE
Confidence 59999999999999999999 67 89999999999998653
No 213
>PRK07233 hypothetical protein; Provisional
Probab=98.92 E-value=1.8e-09 Score=81.39 Aligned_cols=38 Identities=42% Similarity=0.693 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+|+|||||++||++|+.|++ .|++|+|+|+.+.+||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~------~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK------RGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEeCCCCCCce
Confidence 58999999999999999999 899999999999999865
No 214
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.92 E-value=1.9e-09 Score=82.59 Aligned_cols=39 Identities=38% Similarity=0.646 Sum_probs=36.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
.||+|||||++||++|..|++ +|++|+|+||++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~------~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK------RGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCcc
Confidence 589999999999999999999 899999999999888754
No 215
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.92 E-value=1.6e-09 Score=82.37 Aligned_cols=40 Identities=43% Similarity=0.729 Sum_probs=36.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCC----CceEEEEecCCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK----ELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~----g~~v~vlE~~~~~~g~~~ 68 (182)
.||+|||||++||++|+.|++ . |.+|+|+|+++..||...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~------~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEK------EIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHh------cCCCCCCcEEEEEcCCcCcceEE
Confidence 589999999999999999999 6 899999999999887643
No 216
>KOG0405|consensus
Probab=98.89 E-value=6.1e-08 Score=69.21 Aligned_cols=138 Identities=24% Similarity=0.315 Sum_probs=80.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh------HHhhhhhhHHhcCCC
Q psy2240 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI------ALNELLPDWKDLGAP 91 (182)
Q Consensus 18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~ 91 (182)
.....+|.+|||||-.|++.|...+. .|.++.|+|..-..||....-++.+.+ .+...+.+-..++.+
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~------~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~ 89 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAAS------HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFP 89 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHh------cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCc
Confidence 33568999999999999999999999 899999999876777766665654332 222223332333322
Q ss_pred CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCc-c-----ceeEEcCCCcE
Q psy2240 92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP-A-----SEVLYHGDGSV 165 (182)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~-v-----~~i~~~~~g~~ 165 (182)
.+.....+ +..+... ...+ + .+|.....+.+.+.++.++.+.. + .+++. .++..
T Consensus 90 ~~~~~~fd-W~~ik~k---------------rday-i--~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~-~d~~~ 149 (478)
T KOG0405|consen 90 INEEGSFD-WKVIKQK---------------RDAY-I--LRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEV-NDGTK 149 (478)
T ss_pred cccccCCc-HHHHHhh---------------hhHH-H--HHHHHHHHhhccccceeEEeeeEEEcCCCceEEEe-cCCee
Confidence 22111111 0111000 0011 1 24555555666666788777642 2 23343 23333
Q ss_pred EEEEeCCEEEecCCCC
Q psy2240 166 KGIATGDVGIAKDGSP 181 (182)
Q Consensus 166 ~~v~~~~~vi~adG~~ 181 (182)
....+..++|+.+|.|
T Consensus 150 ~~Ytak~iLIAtGg~p 165 (478)
T KOG0405|consen 150 IVYTAKHILIATGGRP 165 (478)
T ss_pred EEEecceEEEEeCCcc
Confidence 3356678899999986
No 217
>KOG2665|consensus
Probab=98.89 E-value=1.5e-08 Score=71.37 Aligned_cols=139 Identities=23% Similarity=0.336 Sum_probs=79.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc--------cccccChhHHhhh---------hh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL--------SGAVIDPIALNEL---------LP 83 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~--------~~~~~~~~~~~~~---------~~ 83 (182)
..+|++|||||++|++.|.+|.- +.++++|.|||+....+-..+ ++-...+..+... +.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~l----rhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~ 122 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSL----RHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYE 122 (453)
T ss_pred ccccEEEECCceeehhhhHHHhh----cCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHH
Confidence 46899999999999999999987 235899999999986552211 1111122221111 11
Q ss_pred hHHhcCCCCCc------cchhhh-------HHHHHhhccCCCCCCCC-------------CCCCCCCccccchHHHHHHH
Q psy2240 84 DWKDLGAPLNT------PVHEDK-------FAYLTKSKRIGIPILPG-------------MPMNNHGNYVVRLGHVVKWL 137 (182)
Q Consensus 84 ~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~l 137 (182)
...+...++-. ....+. +..-..+...++..+.. .....+....++.+.+...+
T Consensus 123 yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 123 YCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF 202 (453)
T ss_pred HhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence 11122211110 000111 11111122111111111 11233446678888999999
Q ss_pred HHHHHHcCcEEecCCccceeEEcCCC
Q psy2240 138 GEQAEAMGVEIYPGIPASEVLYHGDG 163 (182)
Q Consensus 138 ~~~~~~~gv~i~~~~~v~~i~~~~~g 163 (182)
.+..+..|.++..+-++..+.++.++
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~ 228 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEA 228 (453)
T ss_pred HHHHHHhcccccccceeccchhccCC
Confidence 99999999999999999999875553
No 218
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.87 E-value=3.4e-09 Score=79.60 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=40.0
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
|+.++||+|||+|.+|+.+|..|++ .|.+|+++||++..||...
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~------~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV------NGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh------CCCEEEEecCCCCcCcccc
Confidence 4567999999999999999999999 9999999999998887654
No 219
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.86 E-value=3.1e-09 Score=81.64 Aligned_cols=38 Identities=37% Similarity=0.584 Sum_probs=35.2
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
|+|||||++||++|..|++ .|++|+|||++..+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~------~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHh------CCCcEEEEECCCCCcCceE
Confidence 6899999999999999999 8999999999999988643
No 220
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.83 E-value=7.2e-09 Score=76.25 Aligned_cols=43 Identities=44% Similarity=0.671 Sum_probs=39.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+..+||+|||+|.+||++|++|.+ .|++|+|+|.++..||++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k------aG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK------AGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh------cCcEEEEEeccCCcCceeE
Confidence 567899999999999999999999 8999999999999998764
No 221
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.83 E-value=6.9e-09 Score=76.36 Aligned_cols=39 Identities=38% Similarity=0.556 Sum_probs=35.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+|++|||||++|+++|..|++ .|.+|+|||+.+..||..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~------~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ------LNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCCCce
Confidence 599999999999999999998 899999999988777643
No 222
>KOG2960|consensus
Probab=98.82 E-value=2.2e-08 Score=66.79 Aligned_cols=47 Identities=38% Similarity=0.627 Sum_probs=39.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~ 72 (182)
+.||+|||+|-+||++||..++ +.+.++|.+||.+-.+||..+-++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~----~rPdlkvaIIE~SVaPGGGaWLGGQ 122 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAK----NRPDLKVAIIESSVAPGGGAWLGGQ 122 (328)
T ss_pred ccceEEECCCccccceeeeeec----cCCCceEEEEEeeecCCCcccccch
Confidence 5699999999999999999986 2267899999999888876665444
No 223
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.80 E-value=6.6e-09 Score=76.91 Aligned_cols=41 Identities=41% Similarity=0.733 Sum_probs=37.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..-+++|||||++|+++|+.|++ .|++|.|+||.+..||..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~------~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD------MGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH------cCCeEEEEecCCcccccH
Confidence 44589999999999999999999 899999999999998863
No 224
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=7.3e-09 Score=77.39 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.|+|+|||++||++|+.|++ +|++|+|+|+++..||...
T Consensus 2 rVai~GaG~AgL~~a~~La~------~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD------AGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh------CCCceEEEeccCccCceee
Confidence 59999999999999999999 9999999999999998653
No 225
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.80 E-value=6.8e-09 Score=79.03 Aligned_cols=45 Identities=36% Similarity=0.632 Sum_probs=35.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+|+|||||++||++|+.|++.....+.|.+|+|||+++..||...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 599999999999999999981000012479999999999998754
No 226
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.79 E-value=9.2e-09 Score=78.12 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=35.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+|+|||||++|+++|+.|++ +|++|+|+|+.+..||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~------~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD------AGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCc
Confidence 48999999999999999999 899999999999888864
No 227
>PLN02568 polyamine oxidase
Probab=98.79 E-value=1.1e-08 Score=78.93 Aligned_cols=41 Identities=34% Similarity=0.624 Sum_probs=36.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCC-----ceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-----LKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-----~~v~vlE~~~~~~g~~ 67 (182)
+..||+|||||++|+++|..|++ .| ++|+|+|++..+||..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~------~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT------SSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh------cccccCCceEEEEeCCCCcCCeE
Confidence 34699999999999999999998 56 8999999999888764
No 228
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.76 E-value=2.1e-08 Score=78.75 Aligned_cols=54 Identities=33% Similarity=0.385 Sum_probs=46.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccccccccChhHHhhh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILSGAVIDPIALNEL 81 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~~~~~~~~~~~~~ 81 (182)
+||++|||+|++|..+|+.+++ .|.+|+|||+.. ..||....-++++++.+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~------~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~ 170 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME------RGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYA 170 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCccccceeEeCCcchHHHHHH
Confidence 6899999999999999999999 899999999753 57887778888887765444
No 229
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.74 E-value=1.4e-08 Score=75.80 Aligned_cols=38 Identities=42% Similarity=0.754 Sum_probs=34.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCcc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHI 67 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~ 67 (182)
.|+|||||++||++|+.|++ .+ .+++|+|+++..||..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k------~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQK------AGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH------hCCCCcEEEEecCCCCCceE
Confidence 48999999999999999999 66 8999999999888754
No 230
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.71 E-value=8.8e-07 Score=66.46 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=36.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
.++=|||+|+++|++|..|-| +-+-+|-+|+|||+.+..||..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIr--Da~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIR--DAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhc--cCCCCccceEEEeCCCCCCCcc
Confidence 357799999999999999988 4445678999999999887754
No 231
>KOG4716|consensus
Probab=98.71 E-value=6.6e-08 Score=68.85 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=33.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...||.+|||||-+||++|-++++ .|.+|.+||--.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~------~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD------LGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh------cCCcEEEEeecc
Confidence 567999999999999999999999 899999999764
No 232
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.70 E-value=2.5e-08 Score=81.18 Aligned_cols=40 Identities=33% Similarity=0.576 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+||||||+|+++|+.|++ .|++|+|+|+.+.+||..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr------~G~~VTV~Ek~~~lGG~l 576 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR------AGHPVTVFEKKEKPGGVV 576 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------CCCeEEEEecccccCcee
Confidence 4689999999999999999999 899999999998888764
No 233
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.69 E-value=1.8e-08 Score=72.33 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~ 62 (182)
||+||||+|.+|+.+|..|++ .+ .+|+|||+++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~------~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE------AGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT------STTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhh------CCCCcEEEEEcccc
Confidence 799999999999999999998 65 79999999975
No 234
>PLN02676 polyamine oxidase
Probab=98.68 E-value=3.5e-08 Score=75.42 Aligned_cols=42 Identities=29% Similarity=0.609 Sum_probs=37.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~ 67 (182)
...+||+|||||++||++|+.|++ .|. +|+|+|+....||..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~------~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE------AGIEDILILEATDRIGGRM 66 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------cCCCcEEEecCCCCCCCcc
Confidence 346799999999999999999999 888 699999999888754
No 235
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.68 E-value=3.1e-08 Score=75.54 Aligned_cols=38 Identities=34% Similarity=0.577 Sum_probs=35.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
+|+|||||++|+++|+.|++ .|++|+|+|+.+..||..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~------~G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD------AGHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCCCcee
Confidence 48999999999999999999 899999999999888754
No 236
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=4.6e-08 Score=69.00 Aligned_cols=40 Identities=35% Similarity=0.466 Sum_probs=37.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+|++|||+|.+|+.+|..|++ .|.+|+|+||++..||+..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~------~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ------LGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH------cCCEEEEEeccccCCCccc
Confidence 699999999999999999998 8999999999999998763
No 237
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.67 E-value=3.3e-08 Score=80.67 Aligned_cols=41 Identities=27% Similarity=0.511 Sum_probs=37.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..+|+||||||+||++|+.|++ .|++|+|+|+.+..||...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar------~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV------EGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------CCCeEEEEeeCCCCCceEE
Confidence 4689999999999999999999 8999999999998887654
No 238
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.66 E-value=1.1e-07 Score=72.39 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=37.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~ 69 (182)
..+|+|||+||+|+++|..|++. ..|.+|+|+|+.+.++|....
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceEee
Confidence 45899999999999999999851 158999999999998876553
No 239
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.65 E-value=2.2e-07 Score=70.45 Aligned_cols=36 Identities=44% Similarity=0.725 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
+|+|||||++|+++|..|++. +.+.+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcc
Confidence 599999999999999999883 134699999998754
No 240
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=2.2e-07 Score=67.64 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=85.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
|+..+|++.||-||.-|++|+.|... .+.+++.|||.+... |....+..+....+ .++-. +.++
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~Fl----kDLVT----l~~P 68 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFL----KDLVT----LVDP 68 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccch----hhhcc----ccCC
Confidence 34568999999999999999999883 348899999987543 22222222222222 11111 1122
Q ss_pred chhhhHHHH-HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEE-------
Q psy2240 96 VHEDKFAYL-TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVK------- 166 (182)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~------- 166 (182)
-....+-.+ ..+..+ +.+.......+.|.++.+++...+... -.++++++|++|...+.+ ...
T Consensus 69 Ts~ySFLNYL~~h~RL-------y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~ 140 (436)
T COG3486 69 TSPYSFLNYLHEHGRL-------YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN 140 (436)
T ss_pred CCchHHHHHHHHcchH-------hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC
Confidence 222222222 122111 122333466888999999999999887 678999999966332222 111
Q ss_pred --EEEeCCEEEecCCCCC
Q psy2240 167 --GIATGDVGIAKDGSPK 182 (182)
Q Consensus 167 --~v~~~~~vi~adG~~~ 182 (182)
...++++||+.+..|+
T Consensus 141 ~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 141 GTVYRARNLVLGVGTQPY 158 (436)
T ss_pred CcEEEeeeEEEccCCCcC
Confidence 1345689999998875
No 241
>KOG1238|consensus
Probab=98.64 E-value=4.9e-07 Score=69.49 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=34.7
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
...+||.||||||-+||.+|..|++. +..+|+|||++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 35679999999999999999999983 45899999999654
No 242
>PLN02529 lysine-specific histone demethylase 1
Probab=98.63 E-value=8e-08 Score=76.20 Aligned_cols=41 Identities=39% Similarity=0.568 Sum_probs=37.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...||+|||||++|+++|..|++ +|++|+|+|+....||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS------FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------cCCcEEEEecCccCcCce
Confidence 45799999999999999999999 899999999998877754
No 243
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.63 E-value=6.3e-08 Score=65.50 Aligned_cols=33 Identities=52% Similarity=0.886 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
||+|||||++|+++|..|++ .+.+|+++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~------~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR------PGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhc------CCCeEEEEecccc
Confidence 79999999999999999998 8999999987653
No 244
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.63 E-value=3e-06 Score=62.76 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCCC
Q psy2240 131 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGSP 181 (182)
Q Consensus 131 ~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~~ 181 (182)
..+.+.+++.+++.|++|+++++|++|+. +++.+.++ +..+.||.|-|++
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 46888999999999999999999999987 44444433 3357777777763
No 245
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.62 E-value=4e-08 Score=70.06 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=36.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
+..+|+|||+|++||++|+.|++ -.+|+++|++...||.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-------rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-------RHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-------ccceEEEeccccccCccc
Confidence 44589999999999999999998 379999999999998654
No 246
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.60 E-value=8.5e-08 Score=76.54 Aligned_cols=41 Identities=41% Similarity=0.634 Sum_probs=37.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||||++|+++|+.|++ .|++|+|+|+...+||..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~------~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS------MGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeccccCCCcc
Confidence 45789999999999999999999 899999999999888764
No 247
>KOG2311|consensus
Probab=98.60 E-value=4.8e-07 Score=67.29 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=33.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
...+||+|||||-+|+-+|.+.++ -|.+++++-.+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR------~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR------LGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh------cCCceEEeecccc
Confidence 457899999999999999999999 7999999987754
No 248
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.58 E-value=1.4e-07 Score=74.83 Aligned_cols=41 Identities=34% Similarity=0.618 Sum_probs=36.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||+|++|+++|..|++ .|++|+|+|+.+..+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~------~G~~V~V~E~~~~~GG~l 366 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR------NGVAVTVYDRHPEIGGLL 366 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCcee
Confidence 34689999999999999999999 899999999998887654
No 249
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.58 E-value=1.4e-07 Score=71.65 Aligned_cols=41 Identities=32% Similarity=0.542 Sum_probs=36.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||||++|+++|..|++ .|++|+|+|+.+.++|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~------~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK------AGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcEe
Confidence 45799999999999999999999 899999999998777654
No 250
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.58 E-value=1.3e-07 Score=77.78 Aligned_cols=41 Identities=39% Similarity=0.580 Sum_probs=36.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..+|+||||||+||++|..|++ .|++|+|+|+.+.+||...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~------~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK------YGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCcceee
Confidence 4689999999999999999999 8999999999988877543
No 251
>PLN02612 phytoene desaturase
Probab=98.57 E-value=1.1e-07 Score=74.03 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=36.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||||++|+++|+.|++ +|++|+|+|+....||..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~------~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLAD------AGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCCCCCcc
Confidence 4689999999999999999999 899999999998877754
No 252
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.57 E-value=1.3e-07 Score=72.71 Aligned_cols=38 Identities=37% Similarity=0.361 Sum_probs=35.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
+||+|||+|++|+.+|+.|++ .|++|++||+....++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~------~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD------AGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH------CCCeEEEEeccCccCCC
Confidence 699999999999999999999 89999999999887743
No 253
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.56 E-value=1e-07 Score=77.54 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=36.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||||++|+++|+.|++ .|++|+|+|+.+.+||..
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar------~G~~VtV~Ek~~~~GG~l 578 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLAR------AGHPVTVFEREENAGGVV 578 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCeEEEEecccccCcce
Confidence 4589999999999999999999 899999999998888764
No 254
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.53 E-value=1e-07 Score=73.71 Aligned_cols=37 Identities=38% Similarity=0.492 Sum_probs=34.4
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+..++|+||||+|.+|+.+|..|++ .|.+|+|||+.+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~------~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD------AGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC------CCCeEEEEeCCC
Confidence 4567999999999999999999998 899999999995
No 255
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.52 E-value=9.1e-07 Score=67.04 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
+|+|||||++|+.+|..|.+. +.+.+|+|||+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCc
Confidence 699999999999999999872 246899999998653
No 256
>PLN02487 zeta-carotene desaturase
Probab=98.52 E-value=2.8e-07 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.568 Sum_probs=35.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
.+|+|||||++|+++|+.|++ .|++|+|+|+.+..||..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~------~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCeeEEEecCCCCCCce
Confidence 489999999999999999999 899999999999888744
No 257
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.52 E-value=2.4e-07 Score=74.60 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=37.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
...+|+|||||++|+++|..|++ .|++|+|+|+.+.++|...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK------RGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeee
Confidence 34689999999999999999999 8999999999887776543
No 258
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=5.6e-06 Score=61.87 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=32.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g 65 (182)
++|+|||+|++|+.+|.+|.+.. +..+. |.|+|+.+..|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~--~~~~~-Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSP--RPSGL-ISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCC--CCCCc-eEEeccccccCC
Confidence 58999999999999999998843 22233 999999987764
No 259
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.51 E-value=2.1e-07 Score=71.13 Aligned_cols=41 Identities=41% Similarity=0.656 Sum_probs=36.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||+|++|+++|..|++ .|.+|+|+|+.+..+|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~------~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR------AGHKVTVFERADRIGGLL 182 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh------CCCcEEEEecCCCCCcee
Confidence 34689999999999999999999 899999999998877654
No 260
>PRK02106 choline dehydrogenase; Validated
Probab=98.51 E-value=1.6e-07 Score=73.17 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=33.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.++|+||||+|.+|+.+|..|++. +|.+|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~-----~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED-----PDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC-----CCCeEEEecCCCc
Confidence 458999999999999999999982 5899999999963
No 261
>PRK07846 mycothione reductase; Reviewed
Probab=98.50 E-value=3.7e-07 Score=69.34 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=39.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~ 79 (182)
+||++|||||++|..+|.. . .|.+|+|+|+. ..||...+-++++++.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~------~G~~V~lie~~-~~GGtC~n~GCiPsK~l~ 49 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--F------ADKRIAIVEKG-TFGGTCLNVGCIPTKMFV 49 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--H------CCCeEEEEeCC-CCCCcccCcCcchhHHHH
Confidence 3799999999999987755 3 69999999986 467777777787766543
No 262
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.50 E-value=4.1e-07 Score=68.77 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=36.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~ 70 (182)
...|+||||||+|+.+|..|+.. .|.+|+|+||.+.++|....+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEEEe
Confidence 45799999999999999976531 689999999999999876543
No 263
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.49 E-value=2.4e-06 Score=63.59 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+|+|||||++|+++|..|.+. .+..+|+||++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCC
Confidence 4899999999999999999772 25679999998763
No 264
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=3.4e-06 Score=65.96 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe-------------CCEEEecCCC
Q psy2240 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-------------GDVGIAKDGS 180 (182)
Q Consensus 130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~-------------~~~vi~adG~ 180 (182)
...+...|.+.+++.|++++.++.++++..+++|+++|+.. ..+|++++|.
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 46789999999988899999999999998766777777542 3466677765
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.48 E-value=4.2e-07 Score=69.10 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=39.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~ 79 (182)
.||++|||+|++|..+|. +. .|.+|+|+|+. ..||...+-++++++.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~------~g~~V~lie~~-~~GGtC~n~GCiPsK~l~ 50 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RF------ADKRIAIVEKG-TFGGTCLNVGCIPTKMFV 50 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HH------CCCeEEEEeCC-CCCCeeeccCccchHHHH
Confidence 589999999999988753 34 69999999986 468777778888777654
No 266
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.48 E-value=2.2e-07 Score=69.56 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
++||+|||+|++|+++|+.|++ .|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~------~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE------AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH------CCCcEEEEECCC
Confidence 5899999999999999999999 899999999874
No 267
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.47 E-value=3e-07 Score=70.03 Aligned_cols=40 Identities=38% Similarity=0.659 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||||++|+++|..|++ .|++|+|+|+.+..+|..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~------~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLAR------KGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCcEe
Confidence 4689999999999999999999 899999999998776543
No 268
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.46 E-value=4.7e-07 Score=69.07 Aligned_cols=41 Identities=32% Similarity=0.619 Sum_probs=36.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||+|++|+++|..|++ .|.+|+++|+.+..+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~------~G~~V~i~e~~~~~gG~l 180 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR------AGVQVVVFDRHPEIGGLL 180 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCCcee
Confidence 34689999999999999999999 899999999998877654
No 269
>KOG1276|consensus
Probab=98.45 E-value=3.5e-07 Score=67.02 Aligned_cols=44 Identities=39% Similarity=0.604 Sum_probs=35.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~ 69 (182)
..+|+|+|||++||++|+.|++ ++....|+++|+.++.||-..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r----~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLAR----LGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHh----cCCCceEEEEecCCcccceeee
Confidence 4589999999999999999999 2233456779999998875543
No 270
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.45 E-value=2.9e-07 Score=65.35 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+++||+|||||.+|+++|+.|++ +|.++.|+.+.-
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~------~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ------AGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh------cCCcEEEEeCCh
Confidence 36899999999999999999999 899999998773
No 271
>KOG0685|consensus
Probab=98.44 E-value=4.3e-07 Score=67.37 Aligned_cols=43 Identities=40% Similarity=0.601 Sum_probs=36.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
....|+|||||++|+++|..|-+. -..+++|+|.....||+..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccccCceEe
Confidence 345899999999999999999861 3569999999999998654
No 272
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.43 E-value=3.8e-07 Score=72.21 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..+|+|||||++|+++|+.|++ .|++|+|+|+.+..+|...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~------~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR------KGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCceee
Confidence 3589999999999999999999 8999999999988776543
No 273
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.42 E-value=5.9e-07 Score=71.07 Aligned_cols=40 Identities=30% Similarity=0.626 Sum_probs=36.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||+|++|+++|..|++ .|++|+|+|+.+..+|..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~------~G~~Vtv~e~~~~~GG~l 349 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILAR------AGVQVDVFDRHPEIGGML 349 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHH------cCCcEEEEeCCCCCCCee
Confidence 4689999999999999999999 899999999999877654
No 274
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.40 E-value=2.6e-06 Score=62.81 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-------EEEeCCEEEecCCCC
Q psy2240 129 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-------GIATGDVGIAKDGSP 181 (182)
Q Consensus 129 ~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-------~v~~~~~vi~adG~~ 181 (182)
....+...|..++++.||+|+++++|++|. +++..+ .+.++.+|||++|.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 456899999999999999999999999993 222211 145678899999975
No 275
>KOG3923|consensus
Probab=98.39 E-value=9.5e-07 Score=61.84 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=33.0
Q ss_pred ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCC
Q psy2240 125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179 (182)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG 179 (182)
.+......+..+|...+.+.|+.+.. .+|.++..-.. ..-|+||.|.|
T Consensus 145 t~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~~------~~~DVivNCtG 192 (342)
T KOG3923|consen 145 TYLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEVAR------PEYDVIVNCTG 192 (342)
T ss_pred EeeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHhcc------CCCcEEEECCc
Confidence 34667789999999999999998775 47777753221 22355666655
No 276
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.39 E-value=4.5e-06 Score=63.05 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+...+|||||||.+|+.+|..|.+ .+.+|+|||+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~------~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc------CCCeEEEEcCCCC
Confidence 344689999999999999999866 5789999998753
No 277
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.39 E-value=9e-06 Score=60.51 Aligned_cols=91 Identities=26% Similarity=0.276 Sum_probs=63.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
.+++|||||..|+-+|..|++ .|.+|+++|+.+.....
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~------~g~~Vtlv~~~~~~l~~------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCR------AGKAVTLVDNAASLLAS------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCcccch------------------------------------
Confidence 479999999999999999998 89999999986532100
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK 177 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a 177 (182)
. . ...+...+.+.+++.|++++++++++++..++++..+. ....|.+|.|
T Consensus 180 -~-------~-----------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 180 -L-------M-----------------PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred -h-------C-----------------CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEEC
Confidence 0 0 01234556666777899999999999987643322221 2345777777
Q ss_pred CCC
Q psy2240 178 DGS 180 (182)
Q Consensus 178 dG~ 180 (182)
.|.
T Consensus 235 ~G~ 237 (377)
T PRK04965 235 AGL 237 (377)
T ss_pred cCC
Confidence 775
No 278
>PLN03000 amine oxidase
Probab=98.37 E-value=7.2e-07 Score=71.66 Aligned_cols=41 Identities=39% Similarity=0.578 Sum_probs=37.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..+|+|||||++|+++|..|.+ .|++|+|+|+....||...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~------~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMR------FGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHH------CCCcEEEEEccCcCCCCcc
Confidence 4789999999999999999999 8999999999998888653
No 279
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.35 E-value=8.3e-07 Score=71.93 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...+|+|||+||+|+++|+.|++ .|++|+++|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~------~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR------SGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh------CCCeEEEEcccc
Confidence 34689999999999999999999 899999999864
No 280
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=1.4e-05 Score=60.77 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||.+|+.+|..|++ .|.+|+++|+.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~------~g~~Vtli~~~~~ 191 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNK------LGSKVTVLDAAST 191 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCc
Confidence 479999999999999999998 8999999998754
No 281
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.34 E-value=1.1e-06 Score=64.72 Aligned_cols=40 Identities=40% Similarity=0.537 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||+|++|+++|..|++ .|.+|+++|+.+.+++..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~ 57 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC------LGYEVHVYDKLPEPGGLM 57 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcee
Confidence 3589999999999999999999 899999999998877643
No 282
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.33 E-value=1.4e-06 Score=66.83 Aligned_cols=40 Identities=38% Similarity=0.611 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||+|++|+++|..|++ .|.+|+|+|+.+..+|..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~------~g~~V~v~e~~~~~gG~l 182 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR------AGHTVTVFEREDRCGGLL 182 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCCCcee
Confidence 3589999999999999999999 899999999998776543
No 283
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.33 E-value=1.3e-05 Score=61.27 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.+++|||||.+|+.+|..|++ .|.+|+++|+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS------LGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCC
Confidence 479999999999999999999 799999999875
No 284
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.32 E-value=1e-06 Score=68.87 Aligned_cols=40 Identities=35% Similarity=0.680 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||+|++|+++|+.|++ .|.+|+++|+.+..+|..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~------~G~~V~v~e~~~~~GG~l 176 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR------MGHAVTIFEAGPKLGGMM 176 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCee
Confidence 4589999999999999999999 899999999998877654
No 285
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.32 E-value=1.7e-05 Score=59.50 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||+|..|+-+|..|++ .|.+|+++|+.+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ------RRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCc
Confidence 469999999999999999998 8999999998754
No 286
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.31 E-value=6.7e-07 Score=69.37 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~ 62 (182)
|+||||+|.+|+.+|..|++ .+ .+|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~------~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE------DVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhcc------CCCCeEEEEecCCC
Confidence 89999999999999999999 67 79999999963
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=1.9e-05 Score=60.36 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||++|+.+|..|++ .|.+|+++|+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR------LGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCC
Confidence 479999999999999999998 7999999998753
No 288
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.30 E-value=1.5e-05 Score=60.99 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=62.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
..++|||||..|+-+|..|++ .|.+|+++|+.+.....
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l~~------------------------------------ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAA------LGVKVTLINTRDRLLSF------------------------------------ 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcCCc------------------------------------
Confidence 479999999999999999999 89999999987532100
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK 177 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a 177 (182)
+ + ..+...|.+.+++.|++++.+++|++++.++++..+. ....+.+|.|
T Consensus 214 ---------~----------------d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a 267 (461)
T PRK05249 214 ---------L----------------D-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYA 267 (461)
T ss_pred ---------C----------------C-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEe
Confidence 0 0 1244556666777899999999999997644332221 1234666666
Q ss_pred CCC
Q psy2240 178 DGS 180 (182)
Q Consensus 178 dG~ 180 (182)
.|.
T Consensus 268 ~G~ 270 (461)
T PRK05249 268 NGR 270 (461)
T ss_pred ecC
Confidence 654
No 289
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=2.4e-05 Score=59.88 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||..|+-.|..|++ .|.+|+++|+.+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~------~G~~Vtlie~~~~ 208 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR------LGAQVTVVEYLDR 208 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCC
Confidence 479999999999999999998 8999999998653
No 290
>PLN02976 amine oxidase
Probab=98.27 E-value=1.5e-06 Score=72.81 Aligned_cols=40 Identities=33% Similarity=0.733 Sum_probs=36.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+|+|||||++|+++|+.|++ .|++|+|||+.+.+||..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~------~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHH------CCCcEEEEeeccCCCCce
Confidence 4689999999999999999999 899999999998888764
No 291
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.26 E-value=2e-06 Score=64.99 Aligned_cols=40 Identities=40% Similarity=0.625 Sum_probs=37.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..|+|||+||+|+++|..|++ .|++|+++|+.+..+|...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~------~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSR------AGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHh------CCCeEEEeCCcCCCceeEE
Confidence 579999999999999999999 8999999999999887654
No 292
>PRK06370 mercuric reductase; Validated
Probab=98.25 E-value=3e-05 Score=59.30 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||+|..|+-+|..|++ .|.+|+++|+.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR------FGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCC
Confidence 479999999999999999999 8999999998754
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.24 E-value=2.8e-05 Score=59.47 Aligned_cols=34 Identities=18% Similarity=0.464 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||+|.+|+-+|..|++ .|.+|+++|+.+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR------LGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCc
Confidence 579999999999999999999 8999999998753
No 294
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.24 E-value=6.9e-06 Score=66.56 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=30.0
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~ 64 (182)
|+|||+|++|+++|..|.+.. ..+.+|+|||+.+...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCC
Confidence 689999999999999987731 1357999999987653
No 295
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=3.1e-05 Score=59.21 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||.+|+-+|..|++ .|.+|+++|+.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS------LGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCC
Confidence 479999999999999999998 8999999998754
No 296
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=3.1e-05 Score=59.39 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||++|+.+|..|++ .|.+|+++|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~------~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD------FGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH------cCCeEEEEEecCc
Confidence 479999999999999999999 7999999998754
No 297
>PLN02785 Protein HOTHEAD
Probab=98.23 E-value=2.4e-06 Score=66.82 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=32.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
...||+||||||.+|+.+|..|++ +.+|+|||+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 346999999999999999999997 379999999974
No 298
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.21 E-value=2.2e-06 Score=63.91 Aligned_cols=33 Identities=36% Similarity=0.690 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|++|||+|++|+++|+.|++ .|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~------~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE------AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH------CCCCEEEEeCCC
Confidence 589999999999999999999 899999999875
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=98.20 E-value=3.4e-06 Score=66.52 Aligned_cols=41 Identities=37% Similarity=0.547 Sum_probs=36.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
...+|+|||+|++|+++|..|++ .|++|+|||+.+.++|..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~------~G~~v~vie~~~~~gG~~ 322 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT------MGYEVTVYESLSKPGGVM 322 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceE
Confidence 34689999999999999999999 899999999998777643
No 300
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=1.2e-05 Score=59.58 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|+|||||++|+.+|..|.+.. .++.+|+|||+.+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCC
Confidence 4899999999999999986411 14689999998754
No 301
>PRK06116 glutathione reductase; Validated
Probab=98.19 E-value=5.5e-05 Score=57.70 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||+|..|+-+|..|++ .|.+|+++++.+.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG------LGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCC
Confidence 479999999999999999998 7999999998653
No 302
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.19 E-value=1.5e-05 Score=64.86 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~ 64 (182)
.+|+|||+|++|+++|..|.+... ..+.+|+||++.+...
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCc
Confidence 379999999999999999976210 1357999999987653
No 303
>KOG4254|consensus
Probab=98.19 E-value=1.7e-06 Score=63.92 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=37.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
.+++|++|||+|..||.+|..|++ .|.+|+++||+...+|.+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r------~g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR------YGQSVAVLERRHVIGGAA 53 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh------cCcceEEEEEeeecCcce
Confidence 568999999999999999999999 899999999997666654
No 304
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.18 E-value=5.4e-05 Score=57.40 Aligned_cols=73 Identities=30% Similarity=0.325 Sum_probs=58.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
..++|||||+.|+-.|-.+++ .|.+|+|||+.+..-..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~------LG~~VTiie~~~~iLp~------------------------------------ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAA------LGSKVTVVERGDRILPG------------------------------------ 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCCCc------------------------------------
Confidence 469999999999999999999 89999999998753200
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g 163 (182)
. + .++.+.+.+.+++.|++++.+++++.++.++++
T Consensus 212 ---------~----------------D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~ 246 (454)
T COG1249 212 ---------E----------------D-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG 246 (454)
T ss_pred ---------C----------------C-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe
Confidence 0 0 146667777777778999999999999875544
No 305
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.18 E-value=5.9e-05 Score=57.53 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||..|+-+|..|++ .|.+|+++|+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHG------LGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCC
Confidence 479999999999999999999 8999999998754
No 306
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=5.7e-05 Score=57.85 Aligned_cols=33 Identities=36% Similarity=0.480 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.+++|||||..|+-+|..|++ .|.+|+++|+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~------~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKN------YGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCeEEEEecCC
Confidence 479999999999999999999 799999999764
No 307
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.5e-06 Score=59.59 Aligned_cols=85 Identities=32% Similarity=0.491 Sum_probs=56.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK 100 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
..|||+||||||+|.++|+..+| +|+++=++-. ..||... +...+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaAR------KGiRTGl~ae--rfGGQvl-----dT~~I---------------------- 254 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAAR------KGIRTGLVAE--RFGGQVL-----DTMGI---------------------- 254 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHh------hcchhhhhhh--hhCCeec-----cccch----------------------
Confidence 35899999999999999999999 8888765521 2333211 00000
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240 101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY 159 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~ 159 (182)
..+ ..++. ....+|...|.++++++.+++....+++.++.
T Consensus 255 -ENf-----Isv~~-------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~ 294 (520)
T COG3634 255 -ENF-----ISVPE-------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEP 294 (520)
T ss_pred -hhe-----ecccc-------------ccchHHHHHHHHHHhhcCchhhhhhhhhccee
Confidence 000 00111 11237888899999999999998888888876
No 308
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.17 E-value=3.5e-05 Score=59.74 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=42.5
Q ss_pred cccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------------EEeCCEEEecCCC
Q psy2240 126 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------------IATGDVGIAKDGS 180 (182)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------------v~~~~~vi~adG~ 180 (182)
..+++..+...|.+.+++.|++|+++++|++++.++ +.+.+ .+.++.||.|.|.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~ 188 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGI 188 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCc
Confidence 578999999999999999999999999999998743 43332 2345777777775
No 309
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.14 E-value=4e-05 Score=55.97 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=43.9
Q ss_pred CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS 180 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~ 180 (182)
+....+++..+...|.+.+++.|++++.+++|+++..+ ++.+.+| +..+.||.|.|+
T Consensus 129 ~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~ 191 (337)
T TIGR02352 129 PDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGA 191 (337)
T ss_pred CCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCCh
Confidence 34568899999999999999999999999999999874 3444433 334666666664
No 310
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.12 E-value=8.6e-05 Score=56.50 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|||+|..|+-.|..|++ .|.+|+++|+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~------~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN------FGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 379999999999999999999 899999999864
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=6.7e-05 Score=61.29 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|||||..|+-+|..|++ .|.+|+|+|+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~------~G~~VtvVe~~~ 178 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN------LGVETHVIEFAP 178 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeccc
Confidence 369999999999999999999 899999999865
No 312
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=7e-05 Score=56.17 Aligned_cols=72 Identities=39% Similarity=0.565 Sum_probs=58.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
.+++|||+|+.|+.+|..|++ +|++|+++|+.+..++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~------~G~~v~l~e~~~~~~~~~~---------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAK------RGKKVTLIEAADRLGGQLL---------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEcccccchhhh----------------------------------
Confidence 589999999999999999999 8999999999987653210
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG 161 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~ 161 (182)
. ..+...+.+..++.|++++.++.+.+++...
T Consensus 177 ----------------------~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~ 208 (415)
T COG0446 177 ----------------------D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKG 208 (415)
T ss_pred ----------------------h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEccc
Confidence 0 1356667777788899999999999997643
No 313
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.07 E-value=9.1e-05 Score=56.77 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||+|..|+-+|..|++ .|.+|+++|+.+.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~------~g~~Vtli~~~~~ 211 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE------LGVKVTLVSSRDR 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCc
Confidence 479999999999999999998 7999999998654
No 314
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.07 E-value=0.00012 Score=55.86 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||+|..|+-+|..|++ .|.+|+++|+.+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRG------LGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEeCCC
Confidence 469999999999999999998 7999999997643
No 315
>PLN02507 glutathione reductase
Probab=98.06 E-value=0.00013 Score=56.34 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.+++|||||..|+-+|..|++ .|.+|+|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRG------MGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEecC
Confidence 479999999999999999998 799999999765
No 316
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=0.00014 Score=55.94 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||+|..|+.+|..|++ .|.+|+++|+.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~ 217 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRR------LGAEVTILEALPA 217 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCc
Confidence 479999999999999999998 7999999998653
No 317
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.05 E-value=0.00011 Score=55.91 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=61.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
..++|||||++|+-+|..|.+ .|.+|+++++.+....
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~------------------------------------- 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH------LGKNVRIIQLEDRILP------------------------------------- 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh------cCCcEEEEeCCcccCc-------------------------------------
Confidence 479999999999999999988 7899999987643210
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA 176 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~ 176 (182)
. .+ + ..+.+.+.+.+++.|++++.+++++++.. ++.+.. ....+.+|.
T Consensus 187 ---~----~~----------------~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~ 240 (444)
T PRK09564 187 ---D----SF----------------D-KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIV 240 (444)
T ss_pred ---h----hc----------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEE
Confidence 0 00 0 13555667777888999999999999854 232222 234466666
Q ss_pred cCCC
Q psy2240 177 KDGS 180 (182)
Q Consensus 177 adG~ 180 (182)
|.|.
T Consensus 241 a~G~ 244 (444)
T PRK09564 241 ATGV 244 (444)
T ss_pred CcCC
Confidence 6664
No 318
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.04 E-value=0.00011 Score=55.66 Aligned_cols=34 Identities=32% Similarity=0.619 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+|+|||||.+|+.+|..|++ .|.+|+++++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE------RGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcc
Confidence 479999999999999999998 7899999998653
No 319
>PRK14694 putative mercuric reductase; Provisional
Probab=98.04 E-value=0.00013 Score=55.92 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..++|||+|..|+-+|..|++ .|.+|+++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~------~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFAR------LGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEECC
Confidence 479999999999999999999 89999999863
No 320
>KOG1800|consensus
Probab=98.04 E-value=7.6e-06 Score=59.41 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=35.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
..|+|||+||+|..+|..|.+ +..+++|.|+|+.|.+.|...
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk----~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLK----RHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred ceEEEECCCchHHHHHHHHHh----cCCCCeeEeeecCCcccceee
Confidence 379999999999999999987 125789999999998877554
No 321
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.03 E-value=8.6e-06 Score=61.02 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..+|+|||||++|+++|..|.+. +...+|+|+++.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~ 39 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERH 39 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCC
Confidence 35799999999999999999982 12348999998854
No 322
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.03 E-value=0.0001 Score=54.82 Aligned_cols=75 Identities=35% Similarity=0.498 Sum_probs=53.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCC-------CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK-------ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTP 95 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-------g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (182)
.+|+|||||++|.-+|-+|+.+...-.. .++|+|+|+.+....
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 4699999999999999999875431100 247888887764320
Q ss_pred chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240 96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY 159 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~ 159 (182)
.+ ..++..+..+.+++.||+|+.++.|++++.
T Consensus 206 ------------------~~--------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~ 237 (405)
T COG1252 206 ------------------MF--------------PPKLSKYAERALEKLGVEVLLGTPVTEVTP 237 (405)
T ss_pred ------------------CC--------------CHHHHHHHHHHHHHCCCEEEcCCceEEECC
Confidence 00 024666777778889999999999999964
No 323
>PRK14727 putative mercuric reductase; Provisional
Probab=98.03 E-value=0.00014 Score=55.95 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..++|||+|..|+-+|..|++ .|.+|+++++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~------~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR------LGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCEEEEEEcC
Confidence 479999999999999999998 79999999864
No 324
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.3e-05 Score=54.69 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=64.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc---------cChhHHhhhhhhHHhcCCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV---------IDPIALNELLPDWKDLGAPLN 93 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 93 (182)
..|-|||||.+|+-+|+++++ +|++|.++|-.+..+...+.... +....+....+.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~------~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlL-------- 69 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAK------RGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLL-------- 69 (439)
T ss_pred CceEEEcccccccHHHHHHHH------cCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHH--------
Confidence 469999999999999999999 99999999988754422211111 1111111111111
Q ss_pred ccchhhhHHH-----HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeE
Q psy2240 94 TPVHEDKFAY-----LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVL 158 (182)
Q Consensus 94 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~ 158 (182)
+..++. +.......+ ...+...++|..+.+.+.+.++.+. ++|+. .+|+.|-
T Consensus 70 ----k~EMR~lgSlii~~Ad~~~V--------PAGgALAVDR~~Fs~~vT~~l~~hpli~vir-eEvt~iP 127 (439)
T COG1206 70 ----KAEMRLLGSLIIEAADKHRV--------PAGGALAVDRDGFSQAVTEKLENHPLIEVIR-EEVTEIP 127 (439)
T ss_pred ----HHHHHHhhhHHhhhhhhccC--------CCCceeeecHhHHHHHHHHHHhcCCCEEEEc-cccccCC
Confidence 111111 111111111 2223568899999999999998754 77665 4788873
No 325
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.01 E-value=5.4e-05 Score=56.45 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=41.2
Q ss_pred CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----E-EEeCCEEEecCCC
Q psy2240 123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----G-IATGDVGIAKDGS 180 (182)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~-v~~~~~vi~adG~ 180 (182)
+....+++..+...|.+.+++ |++++++++|++++.+++++.+ + ...++.||.|.|.
T Consensus 127 ~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 127 PQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGA 188 (381)
T ss_pred CCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCc
Confidence 445678999999999999998 9999999999999874443222 1 1334555555554
No 326
>KOG0399|consensus
Probab=98.00 E-value=1.2e-05 Score=65.88 Aligned_cols=42 Identities=38% Similarity=0.629 Sum_probs=37.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.-..|.|||+||+||++|-+|-+ .|+.|+|+||...+||-..
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk------~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK------AGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh------cCcEEEEEEecCCcCceee
Confidence 34589999999999999999999 8999999999999887543
No 327
>PRK13748 putative mercuric reductase; Provisional
Probab=98.00 E-value=0.00014 Score=57.09 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..++|||||..|+-+|..|++ .|.+|+++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFAR------LGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCEEEEEecC
Confidence 479999999999999999999 89999999974
No 328
>KOG0404|consensus
Probab=98.00 E-value=0.00019 Score=48.77 Aligned_cols=90 Identities=31% Similarity=0.427 Sum_probs=58.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
...|+|||+||++-++|+.+++ +.++-+++|-.- .++.. .++.+. +
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaar------aelkPllfEG~~-~~~i~-pGGQLt-------------------T------- 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAAR------AELKPLLFEGMM-ANGIA-PGGQLT-------------------T------- 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhh------cccCceEEeeee-ccCcC-CCceee-------------------e-------
Confidence 4579999999999999999999 889999999653 22111 111110 0
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY 159 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~ 159 (182)
..+++.++.+|. -+....|.+.|++...+.|.+|+.. .|.++..
T Consensus 54 -------TT~veNfPGFPd------gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ 97 (322)
T KOG0404|consen 54 -------TTDVENFPGFPD------GITGPELMDKMRKQSERFGTEIITE-TVSKVDL 97 (322)
T ss_pred -------eeccccCCCCCc------ccccHHHHHHHHHHHHhhcceeeee-ehhhccc
Confidence 001111222221 2334578999999999999998865 5666654
No 329
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=0.00016 Score=55.50 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||..|+-+|..|++ .|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR------LGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCCEEEEecCCC
Confidence 479999999999999999999 8999999998754
No 330
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.99 E-value=0.00022 Score=54.93 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||..|+-+|..++.+. ..|.+|+|+|+.+.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNM 224 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCc
Confidence 47999999999999997765521 03889999998754
No 331
>PLN02546 glutathione reductase
Probab=97.99 E-value=0.00021 Score=55.84 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||..|+-+|..|++ .|.+|+++|+.+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~------~g~~Vtlv~~~~~ 286 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNG------LKSDVHVFIRQKK 286 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeccc
Confidence 479999999999999999998 7899999998653
No 332
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.98 E-value=0.00022 Score=54.61 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||+|..|+-+|..|++ .|.+|+++|+.+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSR------LGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCC
Confidence 479999999999999999999 8999999998754
No 333
>PTZ00058 glutathione reductase; Provisional
Probab=97.98 E-value=0.00025 Score=55.49 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||..|+-.|..|++ .|.+|+++|+.+.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~------~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNR------LGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHH------cCCcEEEEEeccc
Confidence 479999999999999999998 7999999998653
No 334
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.95 E-value=0.00019 Score=58.50 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|||||..|+-+|..|++ .|.+|+|+|+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~------~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN------LGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh------cCCeEEEEccCC
Confidence 469999999999999999999 899999999764
No 335
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.89 E-value=0.00029 Score=54.27 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
-.++|||||..|+-+|..|++ .|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAG------IGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHH------hCCcEEEEEec
Confidence 369999999999999999999 79999999863
No 336
>PRK07846 mycothione reductase; Reviewed
Probab=97.86 E-value=0.00042 Score=52.97 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||..|+-+|..|++ .|.+|+++|+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA------LGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCc
Confidence 479999999999999999999 8999999998653
No 337
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.86 E-value=0.00044 Score=53.53 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
.+++|||||..|+-+|..|++ .|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE------LGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcC
Confidence 379999999999999999999 89999999863
No 338
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.84 E-value=3.8e-05 Score=57.77 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=32.7
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
|+.++||+|+|.|..-+.+|..|++ .|.+|+.+|+++.-||..
T Consensus 1 m~~~yDviI~GTGl~esila~als~------~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSR------SGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSSCGGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHh------cCCEEEecCCCCCcCCch
Confidence 4678999999999999999999999 899999999998777643
No 339
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.81 E-value=0.0004 Score=52.86 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||..|+-+|..|++ .|.+|+++|+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE------RGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCcEEEEecccc
Confidence 479999999999999999998 8999999998754
No 340
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.79 E-value=0.00065 Score=54.12 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+++|||||..|+-.|..|++ .|.+|+++|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~------~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA------LGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh------CCCeEEEEeccCc
Confidence 379999999999999999998 7999999998754
No 341
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.78 E-value=0.00037 Score=54.72 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe-------------CCEEEecCCC
Q psy2240 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-------------GDVGIAKDGS 180 (182)
Q Consensus 130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~-------------~~~vi~adG~ 180 (182)
...+...|.+.+++.|++|++++.++++.. ++|+++|+.. ..+|++++|.
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 356889999999889999999999999987 4677776432 3456666664
No 342
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.74 E-value=0.00048 Score=52.61 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..|+|||||..|+-+|..|.+ .|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~------~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALR------LGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCEEEEEeecC
Confidence 479999999999999999999 899999998764
No 343
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=0.0012 Score=50.49 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||||..|+.+|..|++ .|.+|++||+.+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA------LGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCc
Confidence 479999999999999999998 8999999998643
No 344
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.63 E-value=0.0011 Score=50.21 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcC--------CCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDG--------KELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~--------~g~~v~vlE~~~~ 62 (182)
.++|||||++|+-+|..|+.+...+. .+.+|+++|+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999999986432110 2578999987653
No 345
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.59 E-value=0.00041 Score=50.84 Aligned_cols=43 Identities=30% Similarity=0.488 Sum_probs=35.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~ 67 (182)
..+-|||+|++||++|..|-| +....|.++.+||.-+..||..
T Consensus 23 KsaY~vG~GlAsLA~AvfLIR--Dg~m~G~~IHilEelpl~GGSl 65 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIR--DGQMDGKRIHILEELPLAGGSL 65 (587)
T ss_pred ceeEEEccchHhhhheeEEEe--ccccCCceeEeeecCcccCCCC
Confidence 468899999999999999987 3333578999999988777643
No 346
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.56 E-value=0.00014 Score=48.41 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..++. .|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR------AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH------TTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHh------CCCcEEEEECChH
Confidence 38999999999999999999 8999999998753
No 347
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.56 E-value=0.00017 Score=46.90 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||||..|.++|..|++ +|.+|+++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~------~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD------NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH------CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCEEEEEeccH
Confidence 48999999999999999999 899999999875
No 348
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.55 E-value=0.0048 Score=45.44 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=28.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
....|+|||||.++.-++..|.+. ++..+|+++-|++.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPG 226 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCc
Confidence 345799999999999999999882 23358999988764
No 349
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.48 E-value=0.00017 Score=54.24 Aligned_cols=31 Identities=39% Similarity=0.519 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 32 PAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 32 ~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
++||++|+.|++ .|.+|+|||++..+||...
T Consensus 1 iaGL~aA~~L~~------~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAK------AGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHH------TTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHh------CCCCEEEEEcCCCCCcceE
Confidence 689999999999 8999999999999998754
No 350
>KOG1335|consensus
Probab=97.46 E-value=0.0011 Score=48.67 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=58.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA 102 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (182)
..++|||+|..||-.+.--.+ .|-+|+++|-.+..++..
T Consensus 212 k~~~viG~G~IGLE~gsV~~r------LGseVT~VEf~~~i~~~m----------------------------------- 250 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSR------LGSEVTVVEFLDQIGGVM----------------------------------- 250 (506)
T ss_pred ceEEEEcCceeeeehhhHHHh------cCCeEEEEEehhhhcccc-----------------------------------
Confidence 469999999999999988888 799999999776554210
Q ss_pred HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240 103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV 165 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~ 165 (182)
+ .++...+.+.++++|+.+..+++|...+.+.+|.+
T Consensus 251 --------------------------D-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v 286 (506)
T KOG1335|consen 251 --------------------------D-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV 286 (506)
T ss_pred --------------------------C-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce
Confidence 0 14555666666778999999999999998887643
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.44 E-value=0.00038 Score=53.64 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|+|||+|.+|+++|..|++ .|.+|+++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~------~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLE------LGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence 69999999999999999998 899999999764
No 352
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.43 E-value=0.0029 Score=45.41 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.+|+|||+|.+|+-+|..|++ .+.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~------~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR------IAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh------hcCEEEEEEeCc
Confidence 479999999999999999998 788999999853
No 353
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.41 E-value=0.00029 Score=52.49 Aligned_cols=37 Identities=32% Similarity=0.568 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
...|||||||.+|+.+|..|.+.. .+.+|+++|+.+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCc
Confidence 346999999999999999999821 1488999999974
No 354
>KOG1336|consensus
Probab=97.36 E-value=0.0042 Score=46.83 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=67.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF 101 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (182)
.-.|+++|+|..|+-.|..|.. .+.+|+++++.+.+-. .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~------~~~~VT~V~~e~~~~~---------------------~-------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS------KAKSVTVVFPEPWLLP---------------------R-------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh------cCceEEEEccCccchh---------------------h--------------
Confidence 3469999999999999999988 7899999998764320 0
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEE
Q psy2240 102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVG 174 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~v 174 (182)
.+ + ..+.+.+.+..++.|++++.++.+.+++.+++|.+.-|. .+|+|
T Consensus 252 -lf--------------------~-----~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlv 305 (478)
T KOG1336|consen 252 -LF--------------------G-----PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLV 305 (478)
T ss_pred -hh--------------------h-----HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeE
Confidence 00 0 134555666677889999999999999988888766443 34666
Q ss_pred EecCCC
Q psy2240 175 IAKDGS 180 (182)
Q Consensus 175 i~adG~ 180 (182)
|...|+
T Consensus 306 v~GiG~ 311 (478)
T KOG1336|consen 306 VVGIGI 311 (478)
T ss_pred EEeecc
Confidence 665554
No 355
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.32 E-value=0.0006 Score=43.97 Aligned_cols=31 Identities=35% Similarity=0.556 Sum_probs=29.4
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
|+|+|+|..|+..|..|++ .|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~------~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ------AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH------TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH------CCCceEEEEccc
Confidence 7899999999999999999 899999999886
No 356
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.30 E-value=0.00056 Score=49.70 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..++. .|++|+++|..+.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~------aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA------HGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 59999999999999999999 8999999998763
No 357
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.0061 Score=49.73 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~ 61 (182)
..|+|||||.+|+-+|..+.+ .|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r------~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKR------LGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence 479999999999999999998 7886 99998763
No 358
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.21 E-value=0.00066 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|...|..|++ +|.+|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~------~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL------AGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH------CCCeEEEEeCCHH
Confidence 469999999999999999999 8999999998753
No 359
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.20 E-value=0.00057 Score=49.56 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+|.|||+|..|.+.|..|++ +|.+|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~------~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR------AGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHH------CCCeeEEEeCCHH
Confidence 59999999999999999999 8999999999863
No 360
>KOG2755|consensus
Probab=97.19 E-value=0.00034 Score=48.65 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=29.4
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+|||||++|.++|-.|+++- +..+|+++.+++.
T Consensus 2 fivvgggiagvscaeqla~~~----psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE----PSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhC----CCCcEEEEeccHH
Confidence 689999999999999999953 5679999988864
No 361
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.17 E-value=0.011 Score=43.94 Aligned_cols=35 Identities=34% Similarity=0.585 Sum_probs=26.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEE
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV 57 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vl 57 (182)
.+++|||+|.+|+-+|..|++....++...+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 37999999999999999998743222222478887
No 362
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00071 Score=46.77 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+++|||+|-.|.+.|..|++ .|.+|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHH
Confidence 58999999999999999999 8999999999864
No 363
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.13 E-value=0.00082 Score=51.49 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|+|||.|++|+++|..|.+ .|.+|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~------~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA------QGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH------CCCEEEEECCCCc
Confidence 48999999999999999999 8999999998764
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.10 E-value=0.00098 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..+++ .|++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR------AGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh------CCCEEEEEECCHH
Confidence 69999999999999999999 8999999998864
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.06 E-value=0.00079 Score=45.07 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||.|-.|+.+|..|++ .|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~------~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE------KGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH------TTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHh------CCCEEEEEeCChH
Confidence 48999999999999999999 8999999998864
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0012 Score=47.46 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||+|..|.+.|..|++ +|.+|+++|+++
T Consensus 5 kIaViGaG~mG~~iA~~la~------~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF------HGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh------cCCeEEEEeCCH
Confidence 59999999999999999999 899999999875
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.97 E-value=0.0012 Score=47.42 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..|++ +|.+|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~------~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV------SGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHh------CCCcEEEEeCCHH
Confidence 48999999999999999999 8999999998753
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.97 E-value=0.017 Score=44.54 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=26.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
..|+|||||..|+-+|..+.+ .|. +|++++..+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~------~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIR------QGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHH------cCCCeEEEccccC
Confidence 369999999999999988887 565 788666443
No 369
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.89 E-value=0.002 Score=46.74 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|+|||+|..|...|..|++ .|.+|+++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~------~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLAR------AGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCCeEEEEech
Confidence 59999999999999999999 899999999974
No 370
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0064 Score=45.26 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~ 62 (182)
+|+|||+|-.|..+|..|++ ++ .+|++.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~------~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQ------NGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHh------CCCceEEEEeCCHH
Confidence 69999999999999999999 67 89999999853
No 371
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.88 E-value=0.0017 Score=46.68 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..|++ .|.+|+++|+++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~------~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFAR------TGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHh------cCCeEEEEeCCHH
Confidence 59999999999999999999 8999999998763
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.84 E-value=0.0026 Score=46.26 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|+|||+|..|.+.|..|++ .|.+|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~------~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLAR------AGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHH------CCCeEEEEEeCC
Confidence 59999999999999999999 899999999875
No 373
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.82 E-value=0.003 Score=42.87 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
...|+|||+|..|..+|..|++ .|+ +++++|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~------~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR------AGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH------cCCCEEEEECCCE
Confidence 4679999999999999999999 898 699999884
No 374
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.80 E-value=0.0024 Score=49.71 Aligned_cols=35 Identities=40% Similarity=0.600 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
.+|+|||||..|+-+|..|++ .+.+|+++|+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~------~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAG------IVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHh------cCcEEEEEEeCCcC
Confidence 479999999999999999998 78899999987654
No 375
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.76 E-value=0.0035 Score=42.69 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..|+|||||.+|..-+..|.+ .|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~------~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK------AGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH------CCCEEEEEcCC
Confidence 479999999999999999999 89999999864
No 376
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.75 E-value=0.0031 Score=45.83 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||+|..|.+.|..|++ .|++|+++|+++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~------~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFAR------KGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence 59999999999999999999 899999999765
No 377
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.74 E-value=0.003 Score=45.55 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..|++ .|.+|+++|+++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~------~G~~V~~~d~~~~ 38 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAA------AGMDVWLLDSDPA 38 (295)
T ss_pred EEEEECCCHHHHHHHHHHHh------cCCeEEEEeCCHH
Confidence 59999999999999999999 8999999998753
No 378
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.74 E-value=0.0029 Score=45.71 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|+|||+|..|...|..|++ .|.+|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~------~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ------AGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCh
Confidence 48999999999999999999 899999999854
No 379
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.73 E-value=0.0024 Score=45.72 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..+++ .|.+|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~------~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV------AGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH------CCCceEEEeCCHH
Confidence 59999999999999999999 8999999997753
No 380
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.72 E-value=0.0039 Score=40.57 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=28.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE 58 (182)
...|+|||||-.|..-+..|.+ .|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~------~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD------TGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh------CCCEEEEEc
Confidence 3479999999999999999988 899999995
No 381
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.71 E-value=0.045 Score=44.13 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
..|+|||||..|+-+|..+.+ .|. +|+++.+..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r------~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALR------HGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCCeEEEeEecC
Confidence 379999999999999988888 675 699988764
No 382
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.67 E-value=0.003 Score=49.66 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+|+|||||.+|+-+|..|++ .|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~------~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR------YASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc------cCCEEEEEEeCCc
Confidence 479999999999999999998 7999999998864
No 383
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.67 E-value=0.0032 Score=45.54 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~ 59 (182)
.|+|||+|..|...|..|++ .|.+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~------~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE------AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH------CCCceEEEec
Confidence 48999999999999999999 8999999998
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.65 E-value=0.0023 Score=38.49 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...|+|||||..|..-+..|.+ .|.+|+|+....
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~------~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE------AGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC------CTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHh------CCCEEEEECCch
Confidence 3579999999999999999998 899999998763
No 385
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.0033 Score=46.49 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|.|||.|-+||+.|..|++ .|++|+++|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~------~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAE------LGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHH------cCCeEEEEeCCH
Confidence 58999999999999999999 899999999885
No 386
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.64 E-value=0.0046 Score=42.03 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..|+|||||-.|...+..|.+ .|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~------~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLK------YGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCeEEEEcCC
Confidence 479999999999999999998 89999999754
No 387
>PRK10262 thioredoxin reductase; Provisional
Probab=96.62 E-value=0.004 Score=45.44 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
..++|||+|..|+-+|..|++ .+.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~------~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN------IASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh------hCCEEEEEEECCcc
Confidence 479999999999999999998 78999999997643
No 388
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.61 E-value=0.0042 Score=39.29 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
+..|+|||+|..|+.+|..|++ .|. +++++|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~------~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR------SGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH------HTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHH------hCCCceeecCCcce
Confidence 3579999999999999999999 677 8999998864
No 389
>KOG1439|consensus
Probab=96.61 E-value=0.0012 Score=48.56 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=37.1
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~ 66 (182)
|+.++||+|+|-|..=+..+..|+. .|.+|+.+||++.-|+.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~------~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSV------DGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeee------cCcEEEEEeCCCCCCcc
Confidence 3556999999999999999999999 89999999999876653
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.61 E-value=0.0053 Score=37.62 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
|+|+|.|..|..++..|.+ .+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~------~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE------GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH------TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh------CCCEEEEEECCcH
Confidence 6899999999999999998 7789999999863
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.0042 Score=47.53 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|+|+|..|+.+|..|++ .|.+|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~------~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKK------LGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence 469999999999999999999 899999999874
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.60 E-value=0.0062 Score=40.12 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...|+|+|+|.+|..++..|.. .|.+|+++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~------lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG------LGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH------TT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhH------CCCEEEeccCCH
Confidence 4689999999999999999998 799999999875
No 393
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.57 E-value=0.0044 Score=48.34 Aligned_cols=35 Identities=37% Similarity=0.550 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
.+|+|||||.+|+-+|..|+. .+.+|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~------~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAG------IVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHh------cCCEEEEEEECccc
Confidence 479999999999999999998 78999999988754
No 394
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.55 E-value=0.0045 Score=46.13 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..+++|||+|.+|..++..|.. .|.+|+++|+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~------lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG------LGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH------CCCeEEEEECCH
Confidence 3579999999999999999998 799999999874
No 395
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0068 Score=44.45 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=35.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g 65 (182)
..+||+|.|-|+.=+..+..|+. .|.+|+.||+++.-|+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~------~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSW------DGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhh------cCceEEEEeCCCccCc
Confidence 36999999999999999999999 8999999999986553
No 396
>KOG4405|consensus
Probab=96.54 E-value=0.0037 Score=46.43 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=38.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68 (182)
Q Consensus 19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~ 68 (182)
.+.++|+||||-|..=.-+|.+.++ .|.+|+=+|+++.-||.+.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSr------sG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSR------SGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhh------cCCceEeccCccccCCccc
Confidence 3467999999999999999999999 8999999999998887654
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.52 E-value=0.0078 Score=38.14 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~ 61 (182)
...++|||+|-+|-+++..|.. .|.+ |+|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA------LGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH------TTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHH------cCCCEEEEEECCH
Confidence 4579999999999999999999 7876 99998874
No 398
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.51 E-value=0.0047 Score=46.77 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||.|..|+.+|..|++ .|++|+++|+++.
T Consensus 5 kI~VIGlG~~G~~~A~~La~------~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFAS------RQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHh------CCCEEEEEeCCHH
Confidence 59999999999999999999 8999999998764
No 399
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.50 E-value=0.0078 Score=43.98 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
..|+|||+|..|.++|+.++. .|+ +++|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~------~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL------KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEeCCCc
Confidence 579999999999999999988 785 8999998764
No 400
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.50 E-value=0.0048 Score=45.44 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|.|||+|..|...|..|++ .|.+|++++|.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~------~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA------AGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh------cCCcEEEEecHH
Confidence 59999999999999999999 899999999864
No 401
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.50 E-value=0.031 Score=47.18 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
..|+|||+|+.|+.+|..|++ .|. .|+|+|..+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~------~G~~vV~vv~~~~ 351 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLA------AGIAVVAIIDARA 351 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCceEEEEccCc
Confidence 479999999999999999999 785 588998653
No 402
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.50 E-value=0.0059 Score=44.36 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~ 62 (182)
+|.|||+|..|.++|+.|++ .| ..++++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~------~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL------RGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH------cCCCCEEEEEECCch
Confidence 59999999999999999998 77 48999998753
No 403
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.48 E-value=0.0057 Score=44.77 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|.|||+|..|.+.|..|++ .|.+|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~------~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS------KKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH------CCCeEEEEecCH
Confidence 48999999999999999999 899999999864
No 404
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.47 E-value=0.0058 Score=47.47 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|...|..|++ .|++|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~------aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ------AGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 359999999999999999999 8999999998864
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.47 E-value=0.0065 Score=44.70 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
...|+|||+|-.|..+|..|++ .|. +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~------aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR------AGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCc
Confidence 4579999999999999999999 887 899999985
No 406
>PRK12831 putative oxidoreductase; Provisional
Probab=96.46 E-value=0.0055 Score=47.11 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
-.|+|||||.+|+-+|..|.+ .|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r------~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALR------LGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCEEEEEeecC
Confidence 479999999999999999999 799999999865
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.44 E-value=0.0079 Score=42.65 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEV 63 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~ 63 (182)
....|+|||.|..|+.+|..|++ .| -+++|+|.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar------~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR------TGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH------cCCCEEEEEeCCEec
Confidence 34689999999999999999999 78 489999988643
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.43 E-value=0.0051 Score=47.70 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..+++ .|++|+++|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~------aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS------AGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 59999999999999999999 8999999998864
No 409
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.42 E-value=0.0058 Score=45.25 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~ 62 (182)
..++|||+|..|+-+|..|.+ .|.+ |+|+++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~------~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVL------LGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHH------cCCCeEEEEeecch
Confidence 369999999999999999988 7886 999998653
No 410
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.42 E-value=0.0075 Score=43.76 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.|.|||+|..|..+|+.|+. .|+ +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~------~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAE------KELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCC
Confidence 58999999999999999998 665 899999854
No 411
>PRK04148 hypothetical protein; Provisional
Probab=96.40 E-value=0.0044 Score=39.01 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..+++||.| .|...|..|++ .|.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~------~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE------SGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH------CCCEEEEEECCHH
Confidence 369999999 89999999999 8999999998764
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.40 E-value=0.007 Score=45.61 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|+|+|.|+.|+.+|..+.. .|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~------~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRG------QGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCEEEEEECChh
Confidence 479999999999999999887 7999999998763
No 413
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.40 E-value=0.0079 Score=44.27 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
....|+|||+|-.|..+|..|++ .|. +++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~------aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR------AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCc
Confidence 35689999999999999999999 788 999999875
No 414
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.38 E-value=0.0059 Score=47.23 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...|+|+|+|++|+.++..+.. .|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~------lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS------LGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence 4579999999999999888877 788999999886
No 415
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.38 E-value=0.0071 Score=44.34 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||+|..|...|..|++ .|.+|++++|.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~------~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS------KGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence 59999999999999999999 899999999974
No 416
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.37 E-value=0.0091 Score=40.61 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
....|+|||.|..|..+|..|++ .|. +++++|.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~------~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG------AGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH------cCCCeEEEecCCEE
Confidence 35689999999999999999999 787 8999998753
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.30 E-value=0.0069 Score=49.07 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|..+|..+++ .|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~------~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS------KGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 359999999999999999999 8999999998853
No 418
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.27 E-value=0.0079 Score=43.92 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
+|.|||+|..|...|..|++ .|.+|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~------~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR------NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence 59999999999999999999 899999999874
No 419
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.24 E-value=0.011 Score=39.22 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.|+|||+|..|..+|..|++ .|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~------~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR------SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence 38999999999999999999 788 599999885
No 420
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.24 E-value=0.011 Score=38.88 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=29.5
Q ss_pred cccEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...++|||+|- +|..+|..|.+ .|.+|+++.|..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~------~g~~V~v~~r~~ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLN------RNATVTVCHSKT 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh------CCCEEEEEECCc
Confidence 46899999995 69999999998 788999999874
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.23 E-value=0.0071 Score=45.78 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||.|..|+.+|..|++ .|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~------~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD------LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh------cCCeEEEEECCHH
Confidence 48999999999999999999 8999999998764
No 422
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.23 E-value=0.008 Score=48.68 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|..+|..+++ .|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~------~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS------KGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 369999999999999999999 8999999998853
No 423
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0055 Score=43.90 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...+|+|||||.+|.-+|..+.- -|.+|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g------lgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG------LGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhc------cCCeeEEEecCH
Confidence 34689999999999999988876 789999999984
No 424
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.18 E-value=0.017 Score=36.95 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.6
Q ss_pred cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+|+|||+ |..|.++|+.|... +..-++.++|....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcc
Confidence 5899999 99999999999981 23347999998753
No 425
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.18 E-value=0.013 Score=41.00 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEV 63 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~ 63 (182)
...|+|||+|..|..+|..|++ .|. +++++|.+...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~------~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAA------AGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHH------cCCCEEEEEeCCccc
Confidence 4689999999999999999999 775 89999988643
No 426
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.17 E-value=0.01 Score=46.08 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||+|..|...|..|++ +|++|+++|+.+.
T Consensus 6 kIavIG~G~MG~~iA~~la~------~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL------AGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence 59999999999999999999 8999999998753
No 427
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.16 E-value=0.015 Score=37.15 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
.|+|||.|-.|..+|..|++ .|. +++++|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~------~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR------SGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCCEEEEEcCCCc
Confidence 38999999999999999999 787 7999998754
No 428
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.12 E-value=0.0077 Score=48.92 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|..+|..++. .|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~------~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD------KGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh------CCCcEEEecCCHH
Confidence 369999999999999999999 8999999998863
No 429
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.12 E-value=0.013 Score=37.17 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
++|+|+|..+..++..++. -|++|+++|-++.
T Consensus 1 L~I~GaG~va~al~~la~~------lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL------LGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHH------CTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHh------CCCEEEEEcCCcc
Confidence 5899999999999998888 8999999998864
No 430
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.10 E-value=0.011 Score=42.75 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 25 VVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
|.|||+|..|..+|..|+. .|+ +|+++|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~------~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL------KELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHh------CCCcEEEEEeCCCc
Confidence 5799999999999999998 666 9999998753
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.09 E-value=0.015 Score=40.87 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
...|+|||.|..|+.+|..|++ .|. +++++|.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~------~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAA------AGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCEE
Confidence 4689999999999999999999 786 8999988753
No 432
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.08 E-value=0.012 Score=45.19 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
-.|+|||||.+|+-+|..|.+ .|. +|+++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~------~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKR------LGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence 479999999999999999998 787 899999864
No 433
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.08 E-value=0.0099 Score=42.57 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||.|..|.+.|..|.+ +|.+|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~------~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS------LGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH------CCCEEEEEECCH
Confidence 48999999999999999998 899999999875
No 434
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.07 E-value=0.015 Score=39.90 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
...|+|||+|..|..+|..|++ .|. +++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~------~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALAR------SGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence 4689999999999999999999 787 599999885
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.07 E-value=0.013 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
..++|||+|-+|.++++.|++ .|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~------~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT------LGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH------cCCCEEEEECCCH
Confidence 469999999999999999998 787 799999875
No 436
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.07 E-value=0.015 Score=42.26 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
.|.|||+|..|..+|..++. .|+ +|.++|....
T Consensus 4 KI~VIGaG~vG~~ia~~la~------~~~~ev~L~D~~~~ 37 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLAL------KELGDVVLFDIVEG 37 (307)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCeEEEEEECCCc
Confidence 69999999999999999998 565 9999998653
No 437
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.06 E-value=0.014 Score=42.48 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||+|..|.+.|..|++ .|.+|.+++|..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~------~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASA------NGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHH------CCCEEEEEeCCC
Confidence 59999999999999999999 899999999875
No 438
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.04 E-value=0.0094 Score=48.27 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHH-HhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLK-QLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~-~~~~~~~~g~~v~vlE~~~ 61 (182)
..|.|||+|..|...|..++ . .|++|+++|.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~------~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK------AGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH------cCCeEEEEeCCH
Confidence 46999999999999999998 6 799999999875
No 439
>PRK08328 hypothetical protein; Provisional
Probab=96.02 E-value=0.017 Score=40.18 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
...|+|||+|-.|+.+|..|++ .|. +++++|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~------~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAA------AGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCcc
Confidence 4679999999999999999999 786 7999987753
No 440
>KOG3851|consensus
Probab=96.02 E-value=0.0094 Score=43.03 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=30.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...+.|+|||||..|++.|..+.+- ...-+|.|+|-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rk----l~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRK----LGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhh----cCCCceEEecchh
Confidence 3568999999999999999999872 2234899998775
No 441
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.96 E-value=0.017 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.+||-|..|...|..|.+ +|++|.++|+.+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~------~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAK------AGYEVTVYDRSPE 35 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHH------TTTEEEEEESSHH
T ss_pred EEEEEchHHHHHHHHHHHHh------cCCeEEeeccchh
Confidence 59999999999999999999 8999999998853
No 442
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.92 E-value=0.012 Score=42.40 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.|||+|..|...|..++. .|++|+++|.++
T Consensus 5 kv~ViGaG~MG~gIA~~~A~------~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL------AGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhh------cCCceEEEeCCH
Confidence 59999999999999999998 789999999984
No 443
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.90 E-value=0.019 Score=41.74 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~ 62 (182)
.|+|||+|-+|.++|+.|+. .| .+++++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~------~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN------QGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCcc
Confidence 58999999999999999998 67 47999998754
No 444
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.89 E-value=0.017 Score=43.42 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
...|+|||.|..|..+|..|.. .|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~------~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG------MGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh------CcCEEEEEeCChh
Confidence 3479999999999999999987 7999999998764
No 445
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.89 E-value=0.017 Score=39.99 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCce---EEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK---VCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~---v~vlE~~~ 61 (182)
..++|+|+|-+|..+|..|.+ .|.+ +.+++|..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~------~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA------AGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH------cCcCcceEEEEeCCC
Confidence 479999999999999999998 7874 99999984
No 446
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.88 E-value=0.021 Score=39.63 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
...|+|||.|..|+.+|..|++ .|. +++++|.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~------~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAA------AGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCEE
Confidence 4689999999999999999999 787 8999987753
No 447
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.85 E-value=0.014 Score=47.30 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHH-HhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLK-QLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~-~~~~~~~~g~~v~vlE~~~~ 62 (182)
..|.|||+|..|...|..++ + .|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~------~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK------AGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH------cCCeEEEEeCCHH
Confidence 36999999999999999887 5 7999999998753
No 448
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.84 E-value=0.26 Score=39.76 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
..|+|||+|..|+-.|..+.+ .|. +|+++++..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~------~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIR------LNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence 479999999999999888777 674 799998764
No 449
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.81 E-value=0.02 Score=37.26 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|+|-|..|-.+|..|.. .|.+|+|.|.+|.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~------~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG------LGARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH------TT-EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhh------CCCEEEEEECChH
Confidence 469999999999999999988 8999999999874
No 450
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.79 E-value=0.016 Score=42.03 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|+|+|+|..|+..|+.|++ .|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~------~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK------AGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh------CCCeEEEEecHH
Confidence 48999999999999999999 788888887775
No 451
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.77 E-value=0.018 Score=44.40 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|+|||.|-.|+.+|..|++ +|+|.+|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~----~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIAL----KCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHh----cCCCCeEEEEECCHH
Confidence 49999999999999999998 223688999998763
No 452
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.74 E-value=0.021 Score=41.25 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...++|||.|.+|..++..|.. .|.+|+++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~------~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA------LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence 4579999999999999999998 799999999885
No 453
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.74 E-value=0.027 Score=38.19 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
...|+|||.|..|+.+|..|++ .|. +++++|.+..
T Consensus 19 ~s~VlviG~gglGsevak~L~~------~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVL------AGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEECCcC
Confidence 4689999999999999999999 787 5999997753
No 454
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.72 E-value=0.024 Score=39.05 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.7
Q ss_pred cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.|.||| +|..|.++|..|++ .|.+|++++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~------~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK------AGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh------CCCEEEEEEcCH
Confidence 489997 69999999999999 889999998865
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.69 E-value=0.018 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||.|..|...|..|++ .|.+|+++++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~------~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK------AGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence 37899999999999999999 8999999998853
No 456
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.68 E-value=0.02 Score=44.32 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
...++|+|+|++|+.++..+.. .|.+|+++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~------lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS------LGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence 4689999999999999988888 789999999875
No 457
>KOG1346|consensus
Probab=95.64 E-value=0.021 Score=42.82 Aligned_cols=132 Identities=22% Similarity=0.229 Sum_probs=71.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99 (182)
Q Consensus 20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (182)
+.....+|||+|.+..+++..... +-++.+|.+|.-.+...-.- +....++ | .+.++....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s----~da~A~vl~iseepelPYmR-------PPLSKEL---W-----~~~dpn~~k 236 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKS----NDATAKVLMISEEPELPYMR-------PPLSKEL---W-----WYGDPNSAK 236 (659)
T ss_pred cccCceeEEcCCchhhhccccccc----CCCCceEEeeccCccCcccC-------CCcchhc---e-----ecCCCChhh
Confidence 345679999999987666555543 11567888887665432110 0000000 0 011111100
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-----EEEeCCEE
Q psy2240 100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-----GIATGDVG 174 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-----~v~~~~~v 174 (182)
.+++. ++..-...-++.++++.+++.+|-.. ..-|+-++.+.+|+.|.. ++..++ .+-.++.+
T Consensus 237 ~lrfk------qwsGkeRsiffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~-~d~~V~LnDG~~I~YdkcL 304 (659)
T KOG1346|consen 237 KLRFK------QWSGKERSIFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDE-EDKKVILNDGTTIGYDKCL 304 (659)
T ss_pred heeec------ccCCccceeEecCCcceeChhHCccc-----ccCceEEEeccceEEeec-ccCeEEecCCcEeehhhee
Confidence 00000 00001112345566778888776653 234689999999999864 333222 25568999
Q ss_pred EecCCCCC
Q psy2240 175 IAKDGSPK 182 (182)
Q Consensus 175 i~adG~~~ 182 (182)
|+++++||
T Consensus 305 IATG~~Pk 312 (659)
T KOG1346|consen 305 IATGVRPK 312 (659)
T ss_pred eecCcCcc
Confidence 99999986
No 458
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.64 E-value=0.03 Score=38.89 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
...|+|||.|-.|..+|..|++ .|. +++|+|.+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar------~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR------SGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------cCCCEEEEECCCEE
Confidence 4679999999999999999999 787 8999998753
No 459
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.63 E-value=0.032 Score=40.63 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~ 61 (182)
..|.|||+|-.|.++|+.|+. .++ ++.|+|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~------~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA------KGLADELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence 479999999999999999988 454 799999765
No 460
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.61 E-value=0.023 Score=43.52 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.++|+|+|.+|.++|..|++ .|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~------~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHK------LGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHH------CCCEEEEEcCCC
Confidence 58999999999999999999 899999999764
No 461
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.60 E-value=0.033 Score=37.77 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
...|+|||.|..|+.+|..|++ .|. +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~------~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVL------SGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHH------cCCCEEEEEECCc
Confidence 4689999999999999999999 887 699998775
No 462
>PRK08223 hypothetical protein; Validated
Probab=95.58 E-value=0.031 Score=40.03 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
....|+|||+|-.|+.+|..|++ .|+ +++++|.+..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~------aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLAR------LGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHH------hCCCeEEEEeCCCc
Confidence 35689999999999999999999 786 7999998753
No 463
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.56 E-value=0.019 Score=44.25 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.+|.|||.|..|...|..|++ +|++|.+++|.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~------~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS------RGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH------CCCeEEEEeCCHH
Confidence 479999999999999999999 8999999999864
No 464
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.55 E-value=0.028 Score=42.60 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|+|.|..|..+|..|.. .|.+|+++|+.+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~------~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG------LGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCCch
Confidence 469999999999999999988 7999999998764
No 465
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.55 E-value=0.034 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|+|.|-.|..+|..|.+ .|.+|++.|+++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~------~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE------EGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence 369999999999999999999 899999999764
No 466
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.52 E-value=0.027 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~ 61 (182)
..|.|||.|..|.+.|..|.+ .|. +|+++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~------~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR------LGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh------cCCCcEEEEEECCH
Confidence 369999999999999999998 674 899999875
No 467
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.025 Score=43.87 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..|+|+|.|.+|++++..|.+ .|.+|++.|+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~------~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTR------FGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHH------CCCEEEEEcCC
Confidence 369999999999999998888 89999999965
No 468
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.51 E-value=0.034 Score=40.61 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~ 61 (182)
..|.|||+|-.|.++|+.|+. .++ .+.|+|...
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~------~~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN------QGIADELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCC
Confidence 479999999999999999988 676 799999864
No 469
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.50 E-value=0.028 Score=40.46 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
..++|||.|..|.++|..|.. .|.+|++++|.+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~------~G~~V~v~~R~~~ 185 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA------LGARVFVGARSSA 185 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence 479999999999999999988 7999999998753
No 470
>KOG2495|consensus
Probab=95.47 E-value=0.0093 Score=44.61 Aligned_cols=40 Identities=40% Similarity=0.662 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcC--------CCceEEEEecCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDG--------KELKVCLVEKAAE 62 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~--------~g~~v~vlE~~~~ 62 (182)
..++||||||+|.-.|.+|+.+-+++- .-++|+++|+.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 479999999999999999976433111 2368999999873
No 471
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.47 E-value=0.028 Score=41.70 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=25.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.|+|+|+|+.||.++..+.. .|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~------~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL------LGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH------cCCceEEEeCCCH
Confidence 59999999999999555555 664 677778875
No 472
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.47 E-value=0.031 Score=41.20 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC--------ceEEEEecC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--------LKVCLVEKA 60 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--------~~v~vlE~~ 60 (182)
+|.|||+|..|.++|..|++ +| .+|.++.++
T Consensus 1 kI~VIGaG~wGtALA~~la~------ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE------NARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCcccccCCceEEEEEec
Confidence 48999999999999999998 78 899999873
No 473
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.46 E-value=0.038 Score=38.51 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~ 62 (182)
.|+|||+|-.|+.++..|++ .|. +++++|.+..
T Consensus 1 kVlvvG~GGlG~eilk~La~------~Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL------MGFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCEE
Confidence 38999999999999999999 676 7999998753
No 474
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.45 E-value=0.048 Score=31.54 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=28.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEec
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEK 59 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~ 59 (182)
...++|+|.|.+|..++..|.+ . +.++.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~------~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLAD------EGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCCEEEEEcC
Confidence 3469999999999999999988 5 678999988
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.029 Score=43.14 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..|+|+|.|.+|.++|..|.+ .|.+|++.|+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~------~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVK------LGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHH------CCCEEEEECCCC
Confidence 369999999999999999998 899999999764
No 476
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.44 E-value=0.037 Score=38.73 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhh---hhcC--CCceEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLA---EKDG--KELKVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~---~~~~--~g~~v~vlE~~~~ 62 (182)
....|+|||+|-.|+.++..|++.. ..-| .|.+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4568999999999999999999831 0000 1349999998753
No 477
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.43 E-value=0.041 Score=40.26 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~ 62 (182)
...|+|||+|..|.++|+.|+. .| .+++|+|....
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~------~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ------KNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH------CCCCeEEEEECCCc
Confidence 3479999999999999999988 66 58999998753
No 478
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.017 Score=42.32 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~ 63 (182)
.||+|||||-+|.-+|+.|+- --..|+++|=.+..
T Consensus 355 K~VAVIGGGNSGvEAAIDLAG------iv~hVtllEF~~eL 389 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAG------IVEHVTLLEFAPEL 389 (520)
T ss_pred ceEEEECCCcchHHHHHhHHh------hhheeeeeecchhh
Confidence 489999999999999999965 22489999977654
No 479
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.35 E-value=0.04 Score=41.12 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
...|+|||+|..|+.+|..|++ .|. +++++|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~------~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLAS------AGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEeCCE
Confidence 4689999999999999999999 786 899999885
No 480
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.34 E-value=0.03 Score=42.08 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|.|||.|..|+.+|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-------G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-------NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-------CCcEEEEECCHH
Confidence 48999999999999987764 799999999864
No 481
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.33 E-value=0.037 Score=39.87 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~ 61 (182)
..++|+|+|-+|.++|+.|++ .|.+ |+|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~------~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCAL------DGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHH------CCCCEEEEEeCCc
Confidence 358999999999999999998 7886 99999864
No 482
>KOG0024|consensus
Probab=95.33 E-value=0.044 Score=39.65 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred CccccccccccccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 10 ~~~~~~~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.++..+.........|+|.|+||.|+.+.+.+.- .|. +|++.|-.+
T Consensus 158 ~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka------~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 158 GVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKA------MGASDVVITDLVA 204 (354)
T ss_pred hhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHH------cCCCcEEEeecCH
Confidence 3344444444455689999999999999887766 565 788887664
No 483
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.33 E-value=0.032 Score=40.32 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+|.|||.|..|...|..|++ .|.+|+++++.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~------~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK------QGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence 59999999999999999999 8999999998753
No 484
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.33 E-value=0.025 Score=43.57 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..|+|||+|.+|+-+|..|++ .+.+|+++.|..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~------~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAK------VAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHH------hCCeEEEEEeec
Confidence 479999999999999999999 678999998864
No 485
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.31 E-value=0.045 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~ 61 (182)
.|.|||+|-.|.++|+.|.. .++ ++.|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~------~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA------LGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence 48999999999999999988 555 799999864
No 486
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.038 Score=42.31 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.++|+|.|.+|+++|..|++ .|.+|++.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~------~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRK------NGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCCC
Confidence 59999999999999999999 8999999997653
No 487
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.31 E-value=0.04 Score=40.91 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
....|+|||.|-.|+.+|..|++ .|+ +++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~------~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG------AGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence 34689999999999999999999 786 899999875
No 488
>PLN02494 adenosylhomocysteinase
Probab=95.30 E-value=0.04 Score=42.16 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
...++|+|.|..|..+|..+.. .|.+|+++|+++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka------~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA------AGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCch
Confidence 3479999999999999999977 7999999998864
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.29 E-value=0.029 Score=42.97 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
.|+|+|+|..|..+|..|.+ .|.+|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~------~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG------ENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh------CCCcEEEEECCHH
Confidence 48999999999999999998 7999999998753
No 490
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.27 E-value=0.056 Score=31.81 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCC---ceEEEE-ecCCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE---LKVCLV-EKAAE 62 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g---~~v~vl-E~~~~ 62 (182)
.|.|||+|-.|.+++..|.+ .| .+|.++ +|++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~------~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA------SGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH------TTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCCceeEEeeccCcHH
Confidence 37899999999999999999 78 789866 77653
No 491
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.26 E-value=0.044 Score=39.49 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.|+|||+|-.|+.+|..|++ .|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~------aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLG------WGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCCeEEEECCCE
Confidence 48999999999999999999 786 799998775
No 492
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.26 E-value=0.044 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~ 60 (182)
..|+|||||..++.=+..|.+ .|.+|+|+-..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~------~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLK------KGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCC
Confidence 469999999999998889988 89999999543
No 493
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.22 E-value=0.12 Score=41.70 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
.-+|||||.-|+-+|..|.+ .|.++.+++=.+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~------~Gm~~~Vvh~~~ 178 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKD------LGMEVTVVHIAP 178 (793)
T ss_pred CcEEEccchhhhHHHHHHHh------CCCceEEEeecc
Confidence 46999999999999999999 899999997543
No 494
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.20 E-value=0.054 Score=36.53 Aligned_cols=33 Identities=36% Similarity=0.651 Sum_probs=29.0
Q ss_pred ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|+|| |..|..++..|++ .|.+|+++.|..
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~------~g~~V~l~~R~~ 62 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAR------EGARVVLVGRDL 62 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence 46999997 9999999999998 788999998763
No 495
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.18 E-value=0.042 Score=40.58 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..|.|||+|..|.+.|..|++ .| .++++.+++
T Consensus 8 mkI~IiGaGa~G~alA~~La~------~g-~v~l~~~~~ 39 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR------RG-PTLQWVRSA 39 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH------CC-CEEEEeCCH
Confidence 469999999999999999999 77 677776653
No 496
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.039 Score=41.94 Aligned_cols=33 Identities=36% Similarity=0.371 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..|+|||-|.+|.++|..|.+ .|.+|++.|+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~------~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ------KGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence 369999999999999999999 899999999764
No 497
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.14 E-value=0.053 Score=38.10 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+...++|+|+|..+..+|..+.. .|++|+++|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~------lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAP------LPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhc------CCCEEEEEeCCcc
Confidence 34689999999999999998888 8999999997654
No 498
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.14 E-value=0.051 Score=39.09 Aligned_cols=32 Identities=13% Similarity=0.380 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA 61 (182)
Q Consensus 24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~ 61 (182)
.|+|||+|..|+.++..|++ .|+ +++|+|-+.
T Consensus 1 kVlVVGaGGlG~eilknLal------~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL------SGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCCeEEEECCCE
Confidence 48999999999999999999 776 789998774
No 499
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.12 E-value=0.034 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62 (182)
Q Consensus 22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~ 62 (182)
+-.++|+|.|..|-.+|..|.+ +|.+++++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~------~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA------AGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH------CCCCEEEEECCHH
Confidence 3579999999999999999998 8999999999864
No 500
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.12 E-value=0.049 Score=38.82 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61 (182)
Q Consensus 23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~ 61 (182)
..++|+|+|.+|.+++..|++ .|.+|++++|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~------~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLK------ADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence 469999999999999999998 788999998864
Done!