RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2240
(182 letters)
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 108 bits (272), Expect = 2e-28
Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
DVVIVG GPAG +AA RL + L V ++EK +E G G + P AL
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAG------LDVLVLEKGSEPGAKPCCGGGLSPRALE 54
Query: 80 ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGE 139
EL+PD+ + + V + + + I +P+ G Y+V KWL E
Sbjct: 55 ELIPDFDEE---IERKVTGARIYFPGEKVAIEVPVGEG--------YIVDRAKFDKWLAE 103
Query: 140 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD------VGIAKDGS 180
+AE G E+YPG + V+ DG V G+ GD V I DG
Sbjct: 104 RAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 58.8 bits (142), Expect = 1e-10
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
ED+ D +IVG G AG AA+ L ++G + V ++E+ G ++G + +L
Sbjct: 3 EDIFDAIIVGAGLAGSVAALVLA----REGAQ--VLVIERGNSAGAKNVTGGRLYAHSLE 56
Query: 80 ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVKWLG 138
++P + D AP+ + +K A++T+ + + G + + +Y V WL
Sbjct: 57 HIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAK 177
EQAE G ++ GI ++ DG V G+ A GDV AK
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAK 154
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 51.0 bits (123), Expect = 5e-08
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 36/157 (22%)
Query: 16 MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
E+ D DV IVG GP+G+ AA LA+ LKV + E+ GG + G ++
Sbjct: 17 FEKLLDYLEVDVAIVGAGPSGLTAA---YYLAKAG---LKVAVFERKLSFGGGMWGGGML 70
Query: 74 DPIAL--NELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
+ E + G V + G YV
Sbjct: 71 FNKIVVQEEADEILDEFGIRYK-EVED-------------------------GLYVADSV 104
Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI 168
L A G +I+ G+ +V+ D V G+
Sbjct: 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGV 141
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 50.5 bits (121), Expect = 1e-07
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV I+G G +G+AAA LKQ + EK +VGG
Sbjct: 7 THTDVAIIGAGQSGLAAAYALKQAGVP-----DFVIFEKRDDVGG 46
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 48.4 bits (116), Expect = 4e-07
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV++G GPAG AAIR QL LKV LVEK +GG
Sbjct: 6 DVVVIGAGPAGYVAAIRAAQLG------LKVALVEKGERLGG 41
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 48.4 bits (115), Expect = 5e-07
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
+D D ++VG G AG AA+ + + L V ++E+ G ++G + L
Sbjct: 3 DDKFDAIVVGAGVAGSVAALVMARAG------LDVLVIERGDSAGCKNMTGGRLYAHTLE 56
Query: 80 ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKWLG 138
++P + AP+ V +K ++LT+ + + P + H +Y V + WL
Sbjct: 57 AIIPGFAA-SAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
EQAE G + PG+ ++ G+ V G+ GD
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGN-KVTGVQAGD 148
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 48.2 bits (115), Expect = 6e-07
Identities = 40/145 (27%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV IVG GPAG+A A+ L + L V L+E+A G + P AL L
Sbjct: 4 DVAIVGAGPAGLALALALARAG------LDVTLLERAPRELLERGRGIALSPNAL-RALE 56
Query: 84 D---WKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHG-NYVVRLGHVVKWLGE 139
W L L P + + I + YVV ++ L E
Sbjct: 57 RLGLWDRL-EALGVPPLHVMVVDDGGRRLL---IFDAAELGRGALGYVVPRSDLLNALLE 112
Query: 140 QAEAMG-VEIYPGIPASEVLYHGDG 163
A A+ V + G V GDG
Sbjct: 113 AARALPNVTLRFGAEVEAVEQDGDG 137
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 48.1 bits (115), Expect = 7e-07
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVID 74
DVV++G G AG+AAA+ + LKV +VEK GG S ID
Sbjct: 1 DVVVIGSGLAGLAAALEAAE------AGLKVAVVEKGQPFGGATAWSSGGID 46
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 47.2 bits (113), Expect = 1e-06
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
DVV+VGGGPAG+AAAI A + G KV LVE+ +GG + + ++ N
Sbjct: 1 DVVVVGGGPAGVAAAIA----AARLGA--KVLLVERRGWLGG-MATSGLVGTDDGNYD 51
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 46.2 bits (110), Expect = 3e-06
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DVV++GGG AG+ AAI + LKV L+ KA GH
Sbjct: 8 DVVVIGGGGAGLRAAIEAAE------AGLKVALLSKAPPKRGH 44
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 45.0 bits (107), Expect = 6e-06
Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DVV+VG GPAG +AA RL K L+V L+EK + + G + P AL EL
Sbjct: 2 DVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSF-PRYKPCGGALSPRALEELDL 54
Query: 84 DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
+ +N F+ S I I YV+ + L E+A+
Sbjct: 55 PGE---LIVNLVRGARFFSPNGDSVEIPIETELA--------YVIDRDAFDEQLAERAQE 103
Query: 144 MGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS 180
G E+ G +V H D V + + I DGS
Sbjct: 104 AGAELRLGTRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGS 146
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 44.9 bits (107), Expect = 7e-06
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 13/61 (21%)
Query: 16 MERFEDV---ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGA 71
M E V D++I+GGG AG AA K+ A +LKV +VEKA +I SGA
Sbjct: 2 MANPEVVEVDTDILIIGGGMAGCGAAFEAKEWA----PDLKVLIVEKA-----NIKRSGA 52
Query: 72 V 72
V
Sbjct: 53 V 53
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 44.8 bits (107), Expect = 7e-06
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
F DV+++G GP G AAIR QL LKV +VEK ++GG
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLG------LKVAIVEK-EKLGG 40
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 44.6 bits (106), Expect = 9e-06
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ DV+I+GGGPAG+ AAI + LKV L+ + E GG
Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGEPGG 40
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 43.9 bits (104), Expect = 1e-05
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DVVI+GGGPAG+AAAIRL + LKV L+E+ +
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR------LGLKVALIEREGGTCYN 37
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA 71
+DV+IVG GP+G+ AA LA+ LKV + E+ GG I G
Sbjct: 31 SDVIIVGAGPSGLTAA---YYLAKAG---LKVAIFERKLSFGGGIWGGG 73
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 43.6 bits (104), Expect = 2e-05
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+V++G GPAG AA+ Q A K GK +V ++E+ VGG
Sbjct: 7 DLVVIGSGPAGEGAAM---QAA-KLGK--RVAVIERYRNVGG 42
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 42.9 bits (102), Expect = 3e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
DV+++GGG AG+ AAI + + +V L++K ++G IL SG
Sbjct: 2 DVIVIGGGAAGLMAAISAAK------RGRRVLLIDKGKKLGRKILISG 43
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 43.2 bits (102), Expect = 3e-05
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV++G G G+AAA L + LKV ++EK VGG
Sbjct: 5 DVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGG 40
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
IVG G +G+ AA L K GK V ++EK +GG+ S
Sbjct: 1 IVGAGLSGLVAAYLLA----KRGK--DVLVLEKRDRIGGNAYS 37
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 42.6 bits (101), Expect = 4e-05
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D+VIVGGGP G+A A+ L + LKV L+E
Sbjct: 1 DIVIVGGGPVGLALALALARSG-----GLKVALIEATP 33
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 42.2 bits (100), Expect = 5e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
+I+GGG AG+ AAI A + L V L+EK ++G +L SG
Sbjct: 1 IIIGGGAAGLMAAI---TAAREG---LSVLLLEKNKKIGKKLLISG 40
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 41.9 bits (99), Expect = 5e-05
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
++VG G AGMA A L L + V +V++ A+ GGH
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAP-----VIIVDRGAQPGGHWR 38
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 42.2 bits (100), Expect = 6e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 11/56 (19%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
MERF DV+I+GGGPAG+ AAI + G+ +V L++K ++G IL SG
Sbjct: 1 MERF----DVIIIGGGPAGLMAAISAAKA----GR--RVLLIDKGPKLGRKILMSG 46
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 41.9 bits (99), Expect = 9e-05
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV+++GGGP G AAIR QL LKV LVEK +GG
Sbjct: 3 DVIVIGGGPGGYVAAIRAAQLG------LKVALVEK-EYLGG 37
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ I+GGG AG++AA RL+ K G +++V L E VGG
Sbjct: 3 IAIIGGGIAGLSAAYRLQ----KAGPDVEVTLFEADDRVGG 39
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 40.3 bits (95), Expect = 1e-04
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
I+G GP G++ RL L + L + + + + G +
Sbjct: 1 AIIGAGPRGLSVLERL--LRRAPDRPLDITVFDPSPPGAGGV 40
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 41.2 bits (97), Expect = 1e-04
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
V++VGGGPAG+ AA + +V L E+ +GG + A +
Sbjct: 382 VLVVGGGPAGLEAAATAARRGH------RVTLFEREDRLGGQVRLAARL 424
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 40.8 bits (96), Expect = 1e-04
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D+VIVG G AG+ A+RL+Q L+V L++
Sbjct: 1 DLVIVGAGLAGLLLALRLRQ----ARPGLRVLLID 31
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 40.4 bits (95), Expect = 2e-04
Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 53/186 (28%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--------GHILSGAVIDP 75
DVV++GGG G++ A +LA + L V L+E+ ++ G + G +
Sbjct: 1 DVVVIGGGIVGLSTAY---ELARRG---LSVTLLER-GDLASGASGRNAGLLHPGLRKER 53
Query: 76 --------IALNELLPDW-KDLGAP--------LNTPVHEDKFAYLTK----SKRIGIP- 113
+ +L + ++LG L E + L + + +G+P
Sbjct: 54 APLLARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPV 113
Query: 114 ----------ILPGMPMNNHGNYVVRLGHVV------KWLGEQAEAMGVEIYPGIPASEV 157
+ PG+ G G V + L AEA+GVEI G + +
Sbjct: 114 ELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGL 173
Query: 158 LYHGDG 163
G G
Sbjct: 174 EREGGG 179
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-GAVID 74
DV++VG GPAG+AAA A + G +V LV++ E GG +LS ID
Sbjct: 165 DVLVVGAGPAGLAAA----LAAARAG--ARVILVDEQPEAGGSLLSEAETID 210
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 40.5 bits (96), Expect = 2e-04
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+++G GPAG AA R +L KV L+EK
Sbjct: 5 DVIVIGAGPAGYVAARRAAKL------GKKVALIEK 34
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 40.6 bits (96), Expect = 2e-04
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ IVGGG AG+AAA RL K G E V + E ++GG
Sbjct: 2 IAIVGGGIAGLAAAYRL----AKRGHE--VTVFEADDQLGG 36
Score = 28.7 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 137 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179
L E EA G EI G P + V+ G G V G+ D
Sbjct: 204 LAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVEVDGEEEDFDA 245
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 40.5 bits (95), Expect = 3e-04
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVIDPIALNEL 81
DVV+VG G GM AA+ A G E + VEK +VGG +SG V+ + N L
Sbjct: 7 YDVVVVGSGGGGMCAAL----AAADSGLEPLI--VEKQDKVGGSTAMSGGVL-WLPNNPL 59
Query: 82 LPDWKDLGAPLNTPVHEDKFAYL 104
+ K G P HED AYL
Sbjct: 60 M---KAAGVP---DSHEDALAYL 76
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
E VV++G GPAG +AA R L L+ VE+ + +GG
Sbjct: 2 EIKTQVVVLGAGPAGYSAAFRAADLG------LETVCVERYSTLGG 41
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 40.1 bits (94), Expect = 3e-04
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 17 ERFEDVAD-VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
E +V+ V+++GGG AG+ AA+ L + KV LVEK +GG +
Sbjct: 118 EIKVEVSKSVLVIGGGVAGITAALELADMG------FKVYLVEKEPSIGGRMA 164
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 39.4 bits (92), Expect = 3e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
+DVVIVG GP+G+ AA LA+K LKV ++E++ GG G
Sbjct: 17 ESDVVIVGAGPSGLTAA---YYLAKKG---LKVAIIERSLSPGGGAWGG 59
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 39.7 bits (93), Expect = 4e-04
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+ ++GGGPAG+A A+ L + L+V L+E + G
Sbjct: 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPG 36
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 39.7 bits (93), Expect = 4e-04
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
ER++ DV+++G G AGM+AA+ A G LKV LVE+ VGG
Sbjct: 11 ERWDAEFDVIVIGAGAAGMSAAL----FAAIAG--LKVLLVERTEYVGG 53
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 39.5 bits (93), Expect = 4e-04
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
D+V+VG GPAG++ A L G LKV L+E+
Sbjct: 5 DIVVVGAGPAGLSFARSLA------GSGLKVTLIERQPL 37
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes
a family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble
periplasmic protein with four heme groups, a
non-covalently bound FAD, and essentially
unidirectional fumarate reductase activity. At least
seven distinct members of this family are found in
Shewanella oneidensis, a species able to use a wide
variety of pathways for respiraton [Energy metabolism,
Electron transport].
Length = 439
Score = 39.6 bits (93), Expect = 5e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSG----AVIDPIAL 78
DVV+VG G AG++AA+ K+ + V L+EK +GG+ ++ A
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAAN-----VVLLEKMPVIGGNSAIAAGGMNAAGTDQQK 55
Query: 79 NELLPDWKDL 88
+ D +L
Sbjct: 56 ALGIEDSPEL 65
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 39.5 bits (93), Expect = 5e-04
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+VI+GGGP G AAIR QL LK LVEK +GG
Sbjct: 6 DLVIIGGGPGGYVAAIRAGQLG------LKTALVEKGK-LGG 40
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 39.2 bits (92), Expect = 6e-04
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DVVI+GGG G A A L + +L V L+EK V
Sbjct: 5 DVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQE 43
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 39.1 bits (91), Expect = 6e-04
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
DVVI+GGGP G AAIR QL LKV VE + +GG L+
Sbjct: 5 DVVIIGGGPGGYNAAIRAGQLG------LKVACVEGRSTLGGTCLN 44
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 39.1 bits (92), Expect = 7e-04
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 36/157 (22%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV----GGHILSGAVIDPIA 77
V V+IVGGG G++AAI L++ + V LVE E G L G + A
Sbjct: 4 VKKVLIVGGGIGGLSAAIALRRAG------IAVDLVEIDPEWRVYGAGITLQGNALR--A 55
Query: 78 LNEL-----------LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNY 126
L EL D DL P T + E + R+ LPG G
Sbjct: 56 LRELGVLDECLEAGFGFDGVDLFDPDGTLLAE------LPTPRLAGDDLPG----GGGIM 105
Query: 127 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163
L + L + A A G ++ G + + DG
Sbjct: 106 RPALARI---LADAARAAGADVRLGTTVTAIEQDDDG 139
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 38.9 bits (91), Expect = 7e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----GAVIDP 75
DVVIVG G AG+ AA+ AE+ G +L V +V K + H +S AV+ P
Sbjct: 7 DVVIVGSGLAGLRAAV---AAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP 60
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 38.7 bits (91), Expect = 8e-04
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
VVI+G GPAG+ AA L + + V ++E VGG
Sbjct: 6 SVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGG 41
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
D++++GGG AG AAI+ K E++ L+V L+EKA
Sbjct: 11 DILVIGGGTAGPMAAIKAK---ERN-PALRVLLLEKA 43
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 7 SKSDQFDVDMERFE----DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
+K + D ++ RF+ V D+V+VGGGPAG+A A Q + G L VC ++
Sbjct: 9 TKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVA----QQVSEAG--LSVCCID 58
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV+VG G AGM AA+ A G L +VEKA GG
Sbjct: 9 DVVVVGSGAAGMVAALT----AAHRG--LSTVVVEKAPHYGG 44
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 37.9 bits (88), Expect = 0.001
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI----LSGAVIDP- 75
VVI+GGG +G+ AA L++ + EL LVE + VGG I G +I+
Sbjct: 1 GKKHVVIIGGGISGLCAAYYLEKEIPELPVEL--TLVEASDRVGGKIQTVKEDGYLIERG 58
Query: 76 ----IALNELLPDW-KDLG--APLNTPVHEDKFAYLTKSKRIGIP 113
+ + PD KDLG L + ++ + + K + +P
Sbjct: 59 PDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVP 103
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 37.8 bits (89), Expect = 0.002
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 21 DVADVVIVGGGPAGMAAAI 39
D DV++VGGGPAG AAAI
Sbjct: 210 DPYDVLVVGGGPAGAAAAI 228
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 37.6 bits (88), Expect = 0.002
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 24 DVVIVGGGPAGMAAAIRL 41
D+ ++GGGPAG+AAAI L
Sbjct: 9 DIAVIGGGPAGLAAAIAL 26
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine. This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
+DV+IVG GP+G+ AA LA+ LKVC++E++ GG G
Sbjct: 21 ESDVIIVGAGPSGLTAA---YYLAK---NGLKVCVLERSLAFGGGSWGG 63
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV++G GP G AAIR QL LKV +E G
Sbjct: 6 DVVVIGAGPGGYVAAIRAAQLG------LKVACIEAWKNPKG 41
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 37.3 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 13 DVDMERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
E + DV++VGGGPAG AAAI + K L+ +V A +GG +
Sbjct: 201 VEAASALEQLDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMV--AERIGGQVKDT 252
Query: 71 AVID 74
I+
Sbjct: 253 VGIE 256
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V++G G G+A AIRL + V +VE+ + GG
Sbjct: 1 AVVIGAGFGGLALAIRLA------AAGIPVTVVEQRDKPGG 35
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D DV+IVG GPAG+ A +L ++ +VE+
Sbjct: 31 DEVDVLIVGCGPAGLTLAAQLSAFP-----DITTRIVER 64
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 37.2 bits (87), Expect = 0.003
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
VV+VG GP G+A AI L Q
Sbjct: 26 VVVVGAGPVGLALAIDLAQ 44
>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family
oxidoreductase 1. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp. The function of this
oxidoreductase is unknown.
Length = 633
Score = 37.2 bits (86), Expect = 0.003
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV++VGGGPAG+ AA R+ +V L E++A +GG + A + L
Sbjct: 374 DVLVVGGGPAGLEAA-RVLAARGH-----RVTLAERSAHLGGMLRIAARGPGLHRLAALA 427
Query: 84 DW 85
DW
Sbjct: 428 DW 429
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with
an active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
DV+I+G GP G+A AI ++ L ++EK V
Sbjct: 1 DVIIIGAGPCGLACAIEAQK------AGLSYLIIEKGNLV 34
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 36.5 bits (85), Expect = 0.004
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL----- 78
DV+IVGGG G++ A+ L +L ++K+ L+E A G +AL
Sbjct: 1 DVIIVGGGLVGLSLALALSRLG-----KIKIALIE--ANSPSAAQPGFDARSLALSYGSK 53
Query: 79 NEL--LPDWKDLGAPLNTPVH 97
L L W L AP TP+
Sbjct: 54 QILEKLGLWPKL-APFATPIL 73
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 36.7 bits (85), Expect = 0.005
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAV 72
VD + F+ DV++VG G GM AA+ + L +VEK+A GG LSG
Sbjct: 3 VDEQNFDREVDVLVVGSGGGGMTAAL------TAAARGLDTLVVEKSAHFGGSTALSGGG 56
Query: 73 I 73
I
Sbjct: 57 I 57
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 36.6 bits (85), Expect = 0.005
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
ADV+IVG G AG++AA LK K G +V ++E VGG L+
Sbjct: 8 ADVIIVGAGLAGLSAAYELK----KAG--YQVQILEARDRVGGRSLTARAGG-------- 53
Query: 83 PDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILP 116
++ DLG P H+ AY +K G+P+ P
Sbjct: 54 -EYTDLGGQYINPTHDALLAY---AKEFGVPLEP 83
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 36.5 bits (85), Expect = 0.005
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
DVVI GGG G+A A+ LKQ L V +V+ A
Sbjct: 2 CDVVIAGGGYVGLALAVALKQ----AAPHLPVTVVDAAPA 37
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 36.4 bits (84), Expect = 0.006
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 6 SSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
S S D +D D+VIVG G AGM+AAI K + ++EK GG
Sbjct: 45 SGASKTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAKD------AGMNPVILEKMPVAGG 98
Query: 66 HIL 68
+ +
Sbjct: 99 NTM 101
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 36.2 bits (84), Expect = 0.006
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAV 72
E DV+++G G G++AAI A K G L V ++EK GG SG V
Sbjct: 7 ELTCDVLVIGSGAGGLSAAI----TARKLG--LDVVVLEKEPVFGGTTAFSGGV 54
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 36.0 bits (84), Expect = 0.006
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 ADVVIVGGGPAGMAAAIRL 41
DV+++GGG AG+ AA+
Sbjct: 3 FDVLVIGGGLAGLTAALAA 21
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 36.3 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
A V++VGGG AG +AAI E +V L+EK A++GG
Sbjct: 410 ARVIVVGGGLAGCSAAI------EAASCGAQVILLEKEAKLGG 446
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 35.5 bits (82), Expect = 0.010
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 33/136 (24%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ------LAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA 77
DV ++GGGP+G AA L + L E+ +K C GG I I+
Sbjct: 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPC--------GGAIPPCL-IEEFD 52
Query: 78 LNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYV--VRLGHVVK 135
+ + L D + + +P + + + YV VR
Sbjct: 53 IPDSLIDRRVTQMRMISPSRVPIK----------------VTIPSEDGYVGMVRREVFDS 96
Query: 136 WLGEQAEAMGVEIYPG 151
+L E+A+ G E+ G
Sbjct: 97 YLRERAQKAGAELIHG 112
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 35.5 bits (83), Expect = 0.010
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V +VG GPAG+AAA +L + KV + E+A +GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGH------KVTVFERADRIGG 180
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 35.4 bits (82), Expect = 0.010
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DVV++G GP G AAIR QL LK +VEK
Sbjct: 6 DVVVLGAGPGGYVAAIRAAQLG------LKTAVVEK 35
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 35.2 bits (82), Expect = 0.011
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V I+GGG G++AA RL K G + + L+E + +GG I
Sbjct: 3 VAIIGGGITGLSAAYRLH----KKGPDADITLLEASDRLGGKI 41
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 35.4 bits (82), Expect = 0.012
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 24 DVVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKA 60
+VIVGGG AG MAAA + L L V LVE
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGG----LDVTLVESE 34
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 35.4 bits (82), Expect = 0.012
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 17/60 (28%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK---------AAEVGGHILSGAVI 73
AD+ I+G G AG+ AAI AE + LK+ L+ K AAE GG S AV
Sbjct: 5 ADLAIIGAGGAGLRAAI---AAAEAN-PNLKIALISKVYPMRSHTVAAE-GG---SAAVA 56
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 35.5 bits (82), Expect = 0.013
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV+++G G AG++AA+ A G LKV +VEK GG
Sbjct: 14 DVLVIGSGAAGLSAAV----TAAWHG--LKVIVVEKDPVFGG 49
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 35.2 bits (81), Expect = 0.013
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
+VI+G G AG+ AA +L + ++ +VE +GG I +
Sbjct: 8 IVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIGGRINT 51
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 35.1 bits (81), Expect = 0.013
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 15 DMERFEDVA--DVVIVGGGPAGMAAAI 39
D E F DV++VGGGPAG AAAI
Sbjct: 202 DAEEFNAKDAYDVLVVGGGPAGAAAAI 228
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 34.9 bits (81), Expect = 0.013
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 24 DVVIVGGGPAGMAAAI 39
DV+I+G GPAG+ AAI
Sbjct: 1 DVIIIGAGPAGLTAAI 16
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 35.1 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DVVIVGGG AG AA+ +K+L L V +V K + H
Sbjct: 5 DVVIVGGGLAGCRAALEIKRLD----PSLDVAVVAKTHPIRSH 43
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 34.7 bits (80), Expect = 0.016
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
DVVIVGGGP G+A A L K+LKV L++
Sbjct: 2 DVVIVGGGPVGLALAAALG--NNPLTKDLKVLLLD 34
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 34.9 bits (81), Expect = 0.017
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D ADVV+VG G AG+ AA+ ++ +V +V KAA G
Sbjct: 14 RDAADVVVVGSGVAGLTAALAARRAG------RRVLVVTKAALDDG 53
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 34.7 bits (80), Expect = 0.018
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
+V++GGGPAG AAI A ++GK V L+++ A++GG L
Sbjct: 3 LVVIGGGPAGYVAAI----TAAQNGKN--VTLIDE-ADLGGTCL 39
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 34.9 bits (80), Expect = 0.018
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI 76
E DVV+VG GP G+ AA + + KV L+E A +GG +L V + +
Sbjct: 131 GGAEPPKDVVVVGAGPIGLEAAEAAAK------RGKKVTLIEAADRLGGQLLDPEVAEEL 184
Query: 77 A 77
A
Sbjct: 185 A 185
Score = 33.3 bits (76), Expect = 0.047
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 25 VVIVGGGPAGMAAAIRLKQL 44
+VIVGGG AG++AA L++L
Sbjct: 1 IVIVGGGAAGLSAATTLRRL 20
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 34.3 bits (79), Expect = 0.023
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA---AEVG-GHILSGAVIDPIALNE 80
+ I+G G G+ AA L ++ G E+KV EK EVG G + VI + ++
Sbjct: 3 IAIIGAGIGGLTAAALL----QEQGHEVKV--FEKNESVKEVGAGIGIGDNVIKKLGNHD 56
Query: 81 LLPDWKDLGAPLNT-PVHEDKFAYLTKSKR 109
L K+ G L+T + +DK L K K
Sbjct: 57 LAKGIKNAGQILSTMNLLDDKGTLLNKVKL 86
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 34.5 bits (80), Expect = 0.023
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQ 43
M + DV+I+G G AG+ AA+ L
Sbjct: 1 MNTDFEHPDVLIIGSGLAGLTAALSLAP 28
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 34.4 bits (80), Expect = 0.023
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
DV+IVGGG AG A+ L +L+ L V L+E A
Sbjct: 5 DVIIVGGGMAGATLALALSRLSH---GGLPVALIEAFA 39
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 34.4 bits (79), Expect = 0.023
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 15/75 (20%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
+ IVG G AG+AAA L++ +V + EK VGG +A L
Sbjct: 3 SIAIVGAGIAGLAAAYALRE------AGREVTVFEKGRGVGGR---------LATRRLDG 47
Query: 84 DWKDLGAPLNTPVHE 98
D GA P E
Sbjct: 48 GRFDHGAQYFKPRDE 62
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 34.3 bits (79), Expect = 0.024
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
V I G G AG+AAA +LA+ V L E +GG + S D
Sbjct: 3 VAIAGAGLAGLAAA---YELADAG---YDVTLYEARDRLGGKVASWRDSD 46
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 34.1 bits (79), Expect = 0.025
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 17 ERFEDVADVVIVGGGPAG--MAAAI--RLKQLAEKDG---KELKVCLVEKAAEV 63
E + +VIVGGGP G +A + RL +L +K EL+V LVE +
Sbjct: 150 EDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203
Score = 29.5 bits (67), Expect = 1.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
+VI+GGG G++AA RL +
Sbjct: 6 IVILGGGFGGLSAAKRLAR 24
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 34.4 bits (79), Expect = 0.025
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
E++ D++I+GGGPAG++A I + +L ++EK + GG I
Sbjct: 2 EEIYDLIIIGGGPAGLSAGIYAGR------AKLDTLIIEK-DDFGGQI 42
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 34.5 bits (80), Expect = 0.026
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGA 71
D+ ++D ADVV+VG G AG AAI A G +V ++E+AA GG LSG
Sbjct: 11 AEDVTSWDDEADVVVVGFGAAGACAAIE----AAAAG--ARVLVLERAAGAGGATALSGG 64
Query: 72 VI 73
VI
Sbjct: 65 VI 66
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 33.7 bits (78), Expect = 0.035
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D IVGGGPAGM + L + G + V ++EK A
Sbjct: 7 TDCCIVGGGPAGMMLGL----LLARAG--VDVTVLEKHA 39
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 33.6 bits (78), Expect = 0.036
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
D VI+GGG G++ A++L++ ++ ++EK + H
Sbjct: 4 DFVIIGGGIVGLSTAMQLQERY----PGARIAVLEKESGPARH 42
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 33.8 bits (78), Expect = 0.038
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV+I+GGG AG++ A+RL + +K C + A + H SG+ + L LP
Sbjct: 2 DVIIIGGGLAGLSCALRLAEAGKK-------CAIIAAGQSALHFSSGS----LDLLSRLP 50
Query: 84 DWKDLGAPL 92
D + + P+
Sbjct: 51 DGQAVEQPM 59
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 33.8 bits (78), Expect = 0.039
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DVVIVG GPAG+ AA L A K LK+ +V+
Sbjct: 13 ALMNAALDVVIVGAGPAGLFAAYELSGDARK-VPILKIYVVDV 54
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 33.4 bits (77), Expect = 0.047
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
DV +VG G +G+AAA L K G + V + E VGG+I S
Sbjct: 12 SKDVAVVGAGVSGLAAAYALAS---KHG--VNVLVTEARDRVGGNITS 54
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 33.6 bits (78), Expect = 0.047
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+R+ D +++G G AG A R L +KV L+E+ +GG
Sbjct: 1 TPAQRY----DAIVIGAGQAGPPLAARAAGLG------MKVALIERGL-LGG 41
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 33.3 bits (77), Expect = 0.048
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
DV+++GGG A + AA+ A + G V L+E A
Sbjct: 6 DVLVIGGGNAALCAAL----AAREAGA--SVLLLEAAPR 38
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 33.3 bits (76), Expect = 0.049
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DM + D DVVIVG G AG++ A L + +KV ++E++ GG
Sbjct: 86 DMITYAD-TDVVIVGAGSAGLSCAYELSK-----NPNVKVAIIEQSVSPGG 130
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 33.5 bits (77), Expect = 0.049
Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 47/161 (29%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP--IALN-- 79
D+ IVG GP G+A A L + + + L + L++ + + DP IAL+
Sbjct: 13 DIAIVGAGPVGLALAGWLARRS--ATRALSIALIDAREP------AASANDPRAIALSHG 64
Query: 80 -----ELLPDWKDLGAPL------------NTPVHEDKFAYLTKSKRIGIPILPGMPMNN 122
E L W P+ T + D +P L
Sbjct: 65 SRVLLETLGAWPADATPIEHIHVSQRGHFGRTLIDRDDH---------DVPAL------- 108
Query: 123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163
YVVR G +V L V A DG
Sbjct: 109 --GYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG 147
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 33.4 bits (77), Expect = 0.051
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+IVGGGPAG+ A+ L + G V LVE+
Sbjct: 2 TDVLIVGGGPAGLMLALLLARA----GVR--VVLVER 32
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 33.6 bits (77), Expect = 0.053
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D VIVG G AG A R L++ L V ++E
Sbjct: 8 YDYVIVGSGSAGSVLAAR---LSDAG---LSVLVLE 37
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 33.2 bits (77), Expect = 0.056
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 25 VVIVGGGPAGMAAAIRL 41
V ++G GPAG+ AA RL
Sbjct: 143 VAVIGAGPAGLTAAHRL 159
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 33.3 bits (76), Expect = 0.056
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
D +IVGGG AG A+RL++ + ++ ++E +GG+
Sbjct: 1 DCIIVGGGLAGGLIALRLQRAR----PDFRIRVIEAGRTIGGN 39
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 33.1 bits (76), Expect = 0.057
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
V+IVGGG G+AAA+ L + + +KV L+E+AAE+G
Sbjct: 7 VLIVGGGIGGLAAALALAR------QGIKVKLLEQAAEIG 40
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 33.3 bits (77), Expect = 0.061
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 24 DVVIVGGGPAGMAAAIRLKQL 44
DV+++GGG AG AA+ ++
Sbjct: 1 DVIVIGGGHAGCEAALAAARM 21
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 33.3 bits (76), Expect = 0.062
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
VV++GGG G++ L++L + +L + LVEK +GG I S
Sbjct: 4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 32.6 bits (75), Expect = 0.089
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
V ++G GPAG+AAA L + G + V + E+ A GG +L G
Sbjct: 125 KVAVIGAGPAGLAAADDLSRA----GHD--VTVFERVALDGGLLLYG 165
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 32.6 bits (75), Expect = 0.092
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
DVVIVG GP G+ A L Q ++V ++E+ +
Sbjct: 11 TDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWPTL 45
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 32.5 bits (75), Expect = 0.093
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V ++GGGPAG++AA L+++ V + E ++GG
Sbjct: 140 VAVIGGGPAGLSAAYHLRRMGH------AVTIFEAGPKLGG 174
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 32.6 bits (74), Expect = 0.098
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG--HILSGAVIDPIALNE 80
DVVI+GGG G++AA L + G V ++E GG +G ++ P A
Sbjct: 5 MDVVIIGGGIVGLSAAYYLA----ERGA--DVTVLEAGEAGGGAAGRNAGGILAPWASPG 58
Query: 81 LLPDWKDLGAP 91
+ + L
Sbjct: 59 GELEVRPLADL 69
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 32.6 bits (75), Expect = 0.100
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
DVV+VGGG G + A+ L Q L+V L+ A
Sbjct: 7 DVVVVGGGLVGASLALALAQSG------LRVALLAPRA 38
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 32.7 bits (74), Expect = 0.10
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 25/102 (24%)
Query: 13 DVDMERFEDV--ADVVIVGGGPAGMAAAIRLKQLAEK----DGKE----------LKVCL 56
+ + FE V A+VV+VG G AG+ AA +L + K +G+ +K
Sbjct: 227 EAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDG 286
Query: 57 VEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE 98
V AA++GG +L+G +P+ + L L P+H+
Sbjct: 287 VVAAADLGGSVLTGINGNPLGV---------LARQLGLPLHK 319
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 32.3 bits (74), Expect = 0.11
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
DV++VG G AG+ AA+ L L+V L+ K
Sbjct: 11 DVLVVGSGAAGLYAALCLPS-------HLRVGLITKD 40
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 32.3 bits (74), Expect = 0.11
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D+ IVGGG G A A+ L Q V ++E AA
Sbjct: 7 DIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAA 38
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 32.6 bits (75), Expect = 0.11
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV--EKAAEVGG 65
ADV++VG G AG+ AA AE +V L+ E A +GG
Sbjct: 5 ADVIVVGAGLAGLVAA------AELADAGKRVLLLDQENEANLGG 43
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 32.5 bits (75), Expect = 0.12
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
D I+GGG AG A A+ L + G +V L E
Sbjct: 262 DAAIIGGGIAGAALALALARR----GW--QVTLYEADEAPA 296
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 32.2 bits (73), Expect = 0.13
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D++IVGGG G AA +K G LK+ LVEKA
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKG--LKIVLVEKAN 36
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 32.0 bits (73), Expect = 0.14
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
DV I+GGG AG+ + L+Q
Sbjct: 4 DVAIIGGGLAGLTCGLALQQ 23
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 31.9 bits (73), Expect = 0.15
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 21 DVADVVIVGGGPAGMAAAIRL 41
V+IVGGGP G+A A+ L
Sbjct: 6 SETPVLIVGGGPVGLALALDL 26
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 32.1 bits (73), Expect = 0.15
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DVVIVG G +GM A+++L + L V ++ K
Sbjct: 14 DVVIVGAGGSGMRASLQLARAG------LSVAVLSK 43
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 31.9 bits (73), Expect = 0.17
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLA 45
DVVIVG G AGM AAI A
Sbjct: 7 DVVIVGAGGAGMRAAIEAGPRA 28
>gnl|CDD|176156 cd08467, PBP2_SyrM, The C-terminal substrate binding of LysR-type
symbiotic regulator SyrM, which activates expression of
nodulation gene NodD3, contains the type 2 periplasmic
binding fold. Rhizobium is a nitrogen fixing bacteria
present in the roots of leguminous plants, which fixes
atmospheric nitrogen to the soil. Most Rhizobium species
possess multiple nodulation (nod) genes for the
development of nodules. For example, Rhizobium meliloti
possesses three copies of nodD genes. NodD1 and NodD2
activate nod operons when Rhizobium is exposed to
inducers synthesized by the host plant, while NodD3 acts
independent of plant inducers and requires the symbiotic
regulator SyrM for nod gene expression. SyrM activates
the expression of the regulatory nodulation gene nodD3.
In turn, NodD3 activates expression of syrM. In
addition, SyrM is involved in exopolysaccharide
synthesis. This substrate-binding domain shows
significant homology to the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 200
Score = 31.3 bits (71), Expect = 0.18
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 118 MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIA 176
+ M ++ + L + L E+A PG+ D + +G+ G + +A
Sbjct: 4 LAMPDYAEVAL-LPRLAPRLRERA--------PGLDLRLCPIGDDLAERGLEQGTIDLA 53
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 31.6 bits (72), Expect = 0.20
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS---GAVIDPIALNE 80
DV I+G GPAG A LA ++KV ++K + G S G ++ P A
Sbjct: 3 DVAIIGLGPAGSA-------LARLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKS 55
Query: 81 LLPDWKDLGAPLNTPVHEDKFAYLT 105
D L P + + FA T
Sbjct: 56 FAKD--GLTLPKDVIANPQIFAVKT 78
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 31.5 bits (71), Expect = 0.20
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
V D++++GGG GMAAA R + + KV LVEK G + G V I N
Sbjct: 48 VYDLIVIGGGSGGMAAARRAAR------NKAKVALVEKDYLGGTCVNVGCVPKKIMFN 99
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 31.7 bits (72), Expect = 0.20
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV 57
+ D+V++G GPAG+A A AE L V L+
Sbjct: 106 DGTLDLVVIGCGPAGLALA------AESAKLGLNVGLI 137
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 492
Score = 31.6 bits (72), Expect = 0.20
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
VV++G G AG+ AA L + +V L+E+ A+ GG
Sbjct: 4 VVVIGAGIAGLTAAALLAKRG------YRVTLLEQHAQPGG 38
>gnl|CDD|219664 pfam07958, DUF1688, Protein of unknown function (DUF1688). A
family of uncharacterized proteins.
Length = 413
Score = 31.4 bits (72), Expect = 0.23
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 8 KSDQFDVDMERFEDVADVVI 27
+ + F VD ++ +DVAD V
Sbjct: 24 QLNHFTVDPDKLDDVADYVA 43
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family
protein.
Length = 337
Score = 31.3 bits (71), Expect = 0.23
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLY----HGDGSVKGIATGDVGIA-----KDG 179
++ LGEQ + M V YP P E+ Y H D + I D +A KDG
Sbjct: 180 YIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLKDG 236
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 31.4 bits (72), Expect = 0.27
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 19 FEDVADVVIVG------GGPAGMAAAIRLKQLAEKDGKEL 52
F V + V+ G G AGMAA I L AE D L
Sbjct: 484 FPGVEEAVVYGVEVPGTDGRAGMAA-IVLADGAEFDLAAL 522
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 31.2 bits (71), Expect = 0.28
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
++I+GG AGM+AA + K+L KEL++ + EK
Sbjct: 3 IIIIGGTAAGMSAAAKAKRLN----KELEITVYEK 33
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 30.9 bits (70), Expect = 0.30
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA----EVGGHIL 68
+E + + V+VGGGP G+ A L D + L LVE+ E G +L
Sbjct: 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223
Query: 69 S 69
Sbjct: 224 G 224
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 31.1 bits (70), Expect = 0.31
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEK----DG----------KELKVCLVEKAAEVGGHIL 68
+ VVIVG G +G+AAA +L + K +G K+++ V AA++GG +L
Sbjct: 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVL 244
Query: 69 SGAVIDPIAL 78
+G + +P+ +
Sbjct: 245 TGTLGNPLGI 254
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 30.9 bits (70), Expect = 0.31
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 21 DVADVVIVGGGPAGMAAAIRL 41
DVV++G G AG++AA+ L
Sbjct: 1 HSCDVVVIGSGAAGLSAALAL 21
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 30.9 bits (70), Expect = 0.33
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D +IVG G +G+ A L QL + +V +VEK +GG
Sbjct: 3 DYIIVGAGLSGIVLANILAQLNK------RVLVVEKRNHIGG 38
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 31.0 bits (70), Expect = 0.36
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV+VG G G++AA+ A G KV +VEKA+ GG
Sbjct: 10 DVVVVGSGAGGLSAAV-----AAAYGG-AKVLVVEKASTCGG 45
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 30.9 bits (70), Expect = 0.36
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
D+VI+G G A AAAI+ +L
Sbjct: 2 DLVIIGSGAAAFAAAIKAAELGAS 25
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 30.7 bits (70), Expect = 0.38
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 25 VVIVGGGPAGMAAAIRLKQL 44
+V +GGGPAG+ A+ +K L
Sbjct: 3 IVCIGGGPAGLYFALLMKLL 22
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 30.7 bits (70), Expect = 0.43
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
DV+I+G G AG++ A+R LAE +V ++ K
Sbjct: 10 DVLIIGSGAAGLSLALR---LAEH----RRVAVLSKGP 40
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 30.6 bits (69), Expect = 0.43
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--VGG 65
ADV++VG G AG+ AA AE +V ++++ E +GG
Sbjct: 6 ADVIVVGAGLAGLVAA------AELADAGKRVLILDQEGEQNLGG 44
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 30.5 bits (69), Expect = 0.44
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI-DPIALNELL 82
+V+I+GGGP G+ A L LA +K C++E+ E + S A+ P L E+L
Sbjct: 4 EVIIIGGGPVGLMLASELA-LA-----GVKTCVIERLKETVPY--SKALTLHPRTL-EIL 54
Query: 83 PDWKDLGA---PLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRL--GHVVKWL 137
D + L + FA L R+ L + NY + L K L
Sbjct: 55 -DMRGLLERFLEKGRKLPSGHFAGL--DTRLDFSAL-----DTSSNYTLFLPQAETEKVL 106
Query: 138 GEQAEAMGVEIYPGIPASEVLYHGDG 163
E A ++GVEI+ G V GDG
Sbjct: 107 EEHARSLGVEIFRGAEVLAVRQDGDG 132
>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 30.4 bits (69), Expect = 0.51
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
DVVI GGG G+A A L+ G L+V ++E+
Sbjct: 5 DVVIAGGGMVGLAVACGLQ------GSGLRVAVLEQRV 36
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 30.4 bits (69), Expect = 0.52
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
ADV+IVG G AG+ +A+ L+ K+LK+ +V K
Sbjct: 4 YADVLIVGSGVAGLYSALNLR-------KDLKILMVSK 34
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 30.5 bits (69), Expect = 0.52
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
ADV IVGGG G+ AI +KQ L V ++E
Sbjct: 25 ADVCIVGGGFTGLWTAIMIKQQRPA----LDVLVLEA 57
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 30.3 bits (69), Expect = 0.56
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
DV+IVG GP G+ AI L + + + L+EKA E
Sbjct: 2 TTTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAPE 37
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 30.1 bits (68), Expect = 0.61
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V I+GGG +G+ A L + G + + E G
Sbjct: 3 KVAIIGGGFSGIYMAAHLLKSPRPSG---LISIFEPRPNFGQ 41
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 30.0 bits (68), Expect = 0.62
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
V+++GGG AG+AAA L + KV L+E +GG +
Sbjct: 3 VIVIGGGIAGIAAARALHDAS------FKVTLLESRDRIGGRV 39
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 29.8 bits (67), Expect = 0.77
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
V +VG GPAG+AAA +L + V + E+ GG ++ G
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGH------TVTVFEREDRCGGLLMYG 185
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 564
Score = 29.7 bits (67), Expect = 0.78
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+++VG G GMAAA+ +L L V +VEK++ VGG
Sbjct: 18 DLLVVGSG-TGMAAALAAHELG------LSVLIVEKSSYVGG 52
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 29.6 bits (67), Expect = 0.87
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
+ +VGGG AG+ A+ L++ K G +V L+ A+ + G
Sbjct: 143 PGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGF 189
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 29.8 bits (67), Expect = 0.91
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 24 DVVIVGGGPAGMAAA 38
D+V++GGG GMAAA
Sbjct: 7 DLVVIGGGSGGMAAA 21
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 29.6 bits (67), Expect = 0.94
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V ++G GPAG+AAA L + V + E+ GG
Sbjct: 542 VAVIGAGPAGLAAAYFLARAG------HPVTVFEREENAGG 576
>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 29.4 bits (66), Expect = 1.0
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA---EVG-GHILSGAVIDPIA 77
V DVVI+G GP G+ A L + G L +V+K+ EVG L+ + +
Sbjct: 5 VTDVVIIGAGPVGLMCA----YLGQLCG--LNTVIVDKSDGPLEVGRADALNARTLQLLE 58
Query: 78 LNELLPDWKDLGAPLNT 94
L +L + LG P NT
Sbjct: 59 LVDLFDELYPLGKPCNT 75
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 29.5 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKV 54
ER + DV+IVG G G A A L KDG+ + V
Sbjct: 38 ERKDGATDVIIVGAGVGGSALAYALA----KDGRRVHV 71
>gnl|CDD|218614 pfam05503, Pox_G7, Poxvirus G7-like.
Length = 363
Score = 29.3 bits (66), Expect = 1.1
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 14/49 (28%)
Query: 36 AAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
AA+RL A K K GH+L GAV PI NE + D
Sbjct: 272 MAALRLLDSAAKYSK--------------GHVLDGAVSSPITKNETVAD 306
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 29.4 bits (66), Expect = 1.2
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 19/61 (31%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV I+GGG G+A A LK +L++ ++E G + + ALNE LP
Sbjct: 6 DVAIIGGGMVGLALAAALK------ESDLRIAVIE-----------GQLPEE-ALNE-LP 46
Query: 84 D 84
D
Sbjct: 47 D 47
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 29.0 bits (66), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D +I+G G AG A RL + + V L+E
Sbjct: 6 YDYIIIGAGSAGCVLANRLSEDPDV-----SVLLLE 36
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 29.0 bits (65), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
D++++GGG G+AAA K
Sbjct: 4 DLIVIGGGSGGLAAAKEAAAYGAK 27
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 29.0 bits (65), Expect = 1.4
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV+IVGG AG A K L+ K G+ KV ++E+ + G ++ P +N L
Sbjct: 35 DVIIVGGSIAGPVLA---KALS-KQGR--KVLMLERDLFSKPDRIVGELLQPGGVNAL-- 86
Query: 84 DWKDLG 89
K+LG
Sbjct: 87 --KELG 90
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 29.2 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+++GGG G A G+ LKV LVEK
Sbjct: 14 DVIVIGGGITGAGIARDAA------GRGLKVALVEK 43
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 29.2 bits (66), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEK 47
V++VGGG AG+ A I + AE
Sbjct: 6 VIVVGGGLAGLMATI---KAAEA 25
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 25 VVIVGGGPAGMAAAIRLKQL-AEKDGKELKVCLVEKAAEVGG 65
+VI+GGGP G AA+ QL A+ V ++E+ +GG
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGAD-------VTVIERDG-LGG 37
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 29.1 bits (65), Expect = 1.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
D+ ++G G AG+ AAI A + L V L+ K + H ++
Sbjct: 4 HDIAVIGAGGAGLRAAIA----AAEANPHLDVALISKVYPMRSHTVA 46
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 29.1 bits (65), Expect = 1.7
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 1 MLSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
+ G + D + +++VG GPAG+ AA L++ + V ++E
Sbjct: 677 CIEMGGNHCVLCDSVDRK-----KIIVVGAGPAGLTAARHLQR------QGFSVTVLEAR 725
Query: 61 AEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED 99
+ +GG + + D +L+ +P DLGA + T V D
Sbjct: 726 SRIGGRVYT----DRSSLS--VP--VDLGASIITGVEAD 756
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members
of this protein family are salicylate 1-monooxygenase,
also called salicylate hydroxylase. This enzyme
converts salicylate to catechol, which is a common
intermediate in the degradation of a number of aromatic
compounds (phenol, toluene, benzoate, etc.). The gene
for this protein may occur in catechol degradation
genes, such as those of the meta-cleavage pathway.
Length = 414
Score = 28.7 bits (64), Expect = 1.8
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA---AEVGGHILSGA 71
V I+GGG AG+A A+ L + + L V L E A EVG + GA
Sbjct: 3 VAIIGGGIAGVALALNLCKHS-----HLNVQLFEAAPAFGEVGAGVSFGA 47
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 28.6 bits (64), Expect = 2.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D+ +VGGG G A A+ + V ++E
Sbjct: 5 DIAVVGGGMVGAATALGFAKQG------RSVAVIEGGE 36
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 28.4 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
DV IVGGG G+ A LK L++ L+E
Sbjct: 20 DVAIVGGGIVGLTLAAALK------DSGLRIALIE 48
>gnl|CDD|183846 PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.
Length = 206
Score = 27.9 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 57 VEKAA----EVGGHILSGAV 72
+E++A E+GGHILSG V
Sbjct: 84 IERSAKFGAEIGGHILSGHV 103
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 28.3 bits (64), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 24 DVVIVGGGPAGMAAAIRL 41
VIVGGG AG+ AA++L
Sbjct: 11 RPVIVGGGLAGLMAALKL 28
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 28.1 bits (64), Expect = 2.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 23 ADVVIVGGGPAGMAAA 38
A VVI+G G G AA
Sbjct: 169 AKVVILGAGVVGENAA 184
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
V+I GGG G+ A+ L Q
Sbjct: 2 KVLIAGGGIGGLTLALTLHQ 21
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 27.1 bits (61), Expect = 2.5
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 25 VVIVGGGPAGMAAAIRLKQ------LAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
++I+G G G + A L++ + +KD + VE+ E G ++ G D L
Sbjct: 1 IIIIGYGRVGRSLAEELREGGPDVVVIDKDPE-----RVEELREEGVPVVVGDATDEEVL 55
Query: 79 NEL 81
E
Sbjct: 56 EEA 58
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 28.0 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D++IVG G G+A A A + G L V ++E+++ G
Sbjct: 2 DLIIVGAGILGLAHAYA----AARRG--LSVTVIERSSRAQG 37
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on
a flavinoid cofactor.
Length = 400
Score = 28.1 bits (63), Expect = 3.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
VVI+G G AG++ + LKQ
Sbjct: 2 PVVIIGAGQAGLSVSYYLKQ 21
>gnl|CDD|188520 TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase
WcaL. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 406
Score = 28.0 bits (62), Expect = 3.4
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK 50
ADV I GPAG+ AA +L++L DGK
Sbjct: 118 KADVFIAHFGPAGVTAA-KLRELGVIDGK 145
>gnl|CDD|227060 COG4716, COG4716, Myosin-crossreactive antigen [Function
unknown].
Length = 587
Score = 27.9 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D IVGGG A +AAA+ L + + DGK ++ ++E+ GG
Sbjct: 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGK--RIHILEELPLAGG 63
>gnl|CDD|181552 PRK08773, PRK08773,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 27.9 bits (62), Expect = 3.6
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D VIVGGG G A A+ L L V LVE
Sbjct: 8 DAVIVGGGVVGAACALALADAG------LSVALVEG 37
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 27.8 bits (62), Expect = 3.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V ++G GPAG++A L + V + EK + GG
Sbjct: 535 SSAHKVAVIGAGPAGLSAGYFLARAG------HPVTVFEKKEKPGG 574
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 27.7 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 8/27 (29%)
Query: 16 MERFEDVADVVIVGGGPAG----MAAA 38
E + DV++VGGG AG +AAA
Sbjct: 2 PEEY----DVIVVGGGHAGCEAALAAA 24
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 27.7 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 14 VDMERFEDVADVVIVGGGPAGMAAAI 39
++ER DVV++G G AG+ AAI
Sbjct: 2 TEVERHS--YDVVVIGAGGAGLRAAI 25
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 27.8 bits (62), Expect = 3.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
DV DVVIVGGG G A L + + K K+ L+E+ ++
Sbjct: 44 DVYDVVIVGGGVTGTALFYTLSKFT--NLK--KIALIERRSDFA 83
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 27.5 bits (62), Expect = 3.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGK----ELKVCLVEKAAEVGGHILSGAVIDPIALN 79
+++G GP G+ + LK A K E E A E+G I V+DP ++
Sbjct: 176 ALVLGAGPIGLLTILALK--AAGASKIIVSEPSEARRELAEELGATI----VLDPTEVD 228
>gnl|CDD|173784 cd03364, TOPRIM_DnaG_primases, TOPRIM_DnaG_primases: The
topoisomerase-primase (TORPIM) nucleotidyl
transferase/hydrolase domain found in the active site
regions of proteins similar to Escherichia coli DnaG.
Primases synthesize RNA primers for the initiation of
DNA replication. DnaG type primases are often closely
associated with DNA helicases in primosome assemblies.
The TOPRIM domain has two conserved motifs, one of
which centers at a conserved glutamate and the other
one at two conserved aspartates (DxD). This glutamate
and two aspartates, cluster together to form a highly
acid surface patch. The conserved glutamate may act as
a general base in nucleotide polymerization by
primases. The DXD motif may co-ordinate Mg2+, a
cofactor required for full catalytic function. E. coli
DnaG is a single subunit enzyme.
Length = 79
Score = 25.9 bits (58), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 16 MERFEDVADVVIVG--GGPAGMAAAIRLKQLAEKDGKELKV 54
E + +A VI+ G AG AA+R +L K G ++V
Sbjct: 36 AELLKRLAKEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 27.7 bits (62), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D +IVG G +G A ++A + GK +V +VEK +GG
Sbjct: 3 DYLIVGAGLSGAVIA----EVAAQLGK--RVLIVEKRNHIGG 38
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 27.8 bits (62), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 14 VDMERFEDVAD---------VVIVGGGPAGMAAAIRL 41
V +E++ ++ D V IVG GPAG++AA L
Sbjct: 266 VPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed
to be uniform in function.
Length = 487
Score = 27.5 bits (61), Expect = 4.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 23 ADVVIVGGGPAGMAAAIRL 41
+DV++VGGG AG A RL
Sbjct: 1 SDVLVVGGGSAGCVVAARL 19
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 27.5 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V ++G GPAG+A A L + ++V + ++ E+GG
Sbjct: 144 VAVIGAGPAGLACADILARAG------VQVVVFDRHPEIGG 178
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 27.6 bits (61), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 20 EDVADVVIVGGGPAGMAAAIRL 41
+ + V I G GPAG+AAA L
Sbjct: 428 KKLGKVAICGSGPAGLAAAADL 449
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase
(NADPH-requiring). This is family of Rossmann fold
oxidoreductases that catalyzes the NADPH-dependent
hydroxylation of lysine at the N6 position,
EC:1.14.13.59.
Length = 335
Score = 27.1 bits (61), Expect = 4.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH---ILSGA 71
D++ +G GP ++ A L+++ EL+ E+ E H +L GA
Sbjct: 4 DLIGIGIGPFNLSLAALLEEI-----PELRALFFERQPEFDWHPGMLLPGA 49
>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase. This model represents
the reductase which acts reduces the geranylgeranyl
group to the phytyl group in the side chain of
chlorophyll. It is unclear whether the enzyme has a
preference for acting before or after the attachment of
the side chain to chlorophyllide a by chlorophyll
synthase. This clade is restricted to plants and
cyanobacteria to separate it from the homologues which
act in the biosynthesis of bacteriochlorophyll
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 398
Score = 27.2 bits (60), Expect = 5.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
V +VGGGPAG +AA L
Sbjct: 3 VAVVGGGPAGASAAETLAS 21
>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal
structure and biogenesis].
Length = 130
Score = 26.3 bits (59), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
+FD+D V + GGG +G A AIR
Sbjct: 59 GKFDID---------VTVKGGGISGQAGAIRH 81
>gnl|CDD|185325 PRK15427, PRK15427, colanic acid biosynthesis glycosyltransferase
WcaL; Provisional.
Length = 406
Score = 27.0 bits (60), Expect = 5.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKV 54
VADV I GPAG+ AA +L++L GK +
Sbjct: 118 VADVFIAHFGPAGVTAA-KLRELGVLRGKIATI 149
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 26.9 bits (60), Expect = 6.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 25 VVIVGGGPAGMAAA 38
V I+G GPAG+AAA
Sbjct: 21 VAIIGAGPAGLAAA 34
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 27.1 bits (60), Expect = 6.4
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 33 AGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID------PIALNELL 82
AG+AAA L + V ++E VGG I + G +I+ A LL
Sbjct: 2 AGLAAARELLRAG------FDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLL 55
Query: 83 PDWKDLGAPLNTPVHEDKFAYLTKSKRIGIP 113
+LG L + + K G P
Sbjct: 56 NLLLELGLELGLLLFPFPGDPFVRLKYRGGP 86
>gnl|CDD|183857 PRK13057, PRK13057, putative lipid kinase; Reviewed.
Length = 287
Score = 26.8 bits (60), Expect = 6.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAI 39
E + D D+VIVGGG + AA
Sbjct: 45 EAYADGVDLVIVGGGDGTLNAAA 67
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
D V++G G AGM AA+++ Q
Sbjct: 9 DAVVIGAGGAGMRAALQISQ 28
>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase;
Provisional.
Length = 450
Score = 27.0 bits (60), Expect = 6.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 25 VVIVGGGPAGMAAA 38
V ++GGGPAG AA
Sbjct: 42 VAVIGGGPAGACAA 55
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 26.9 bits (60), Expect = 6.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
VVI GGGP G+ A L LA D V +VE+
Sbjct: 5 AVVIAGGGPTGLMLAGELA-LAGVD-----VAIVER 34
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 86
Score = 25.4 bits (56), Expect = 7.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVC 55
VV++G G G A K LA++ GK++ +C
Sbjct: 26 VVVLGAGEVGKGIA---KLLADEGGKKVVLC 53
>gnl|CDD|182541 PRK10551, PRK10551, phage resistance protein; Provisional.
Length = 518
Score = 26.9 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 91 PLNTPVHEDKFAYLTKSKRIGIPILPGMPM 120
+NTP+ E + +K + + ILPG PM
Sbjct: 112 EMNTPLSE-LIPAIDINKPVDMAILPGTPM 140
>gnl|CDD|222972 PHA03080, PHA03080, putative virion core protein; Provisional.
Length = 366
Score = 26.9 bits (60), Expect = 7.1
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHILSGAVIDPIAL 78
E P + A + K K L++ A + GH+L GAV P+
Sbjct: 246 ELPEANSNDIKNPVSIQPANINENNIAKASK-----LLDTAEKYSKGHVLDGAVTSPLTK 300
Query: 79 NELLPD 84
N + D
Sbjct: 301 NATIVD 306
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase.
Carotene 7,8-desaturase, also called zeta-carotene
desaturase, catalyzes multiple steps in the pathway
from geranylgeranyl-PP to all-trans-lycopene in plants
and cyanobacteria. A similar enzyme and pathway is
found in the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 26.7 bits (59), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 25 VVIVGGGPAGMAAAIRL 41
V IVG G AG++ A+ L
Sbjct: 2 VAIVGAGLAGLSTAVEL 18
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.
Length = 130
Score = 26.2 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
+FDV V + GGG +G A AIR
Sbjct: 59 GKFDVY---------VTVKGGGISGQAGAIRH 81
>gnl|CDD|176682 cd07261, Glo_EDI_BRP_like_11, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 114
Score = 26.0 bits (58), Expect = 7.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY 103
A GG L+ V D A++ L +W+ G + E F Y
Sbjct: 55 DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFGY 98
>gnl|CDD|237575 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
Length = 576
Score = 26.7 bits (60), Expect = 7.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 14 VDMERFEDVAD--VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ E V + I+G G A +AAA+ L + + G+ + ++E+ GG
Sbjct: 12 ARPRKPEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGE--NITILEELDVPGG 63
>gnl|CDD|227557 COG5232, SEC62, Preprotein translocase subunit Sec62 [Intracellular
trafficking and secretion].
Length = 259
Score = 26.4 bits (58), Expect = 7.7
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 126 YVVRLGHVVKWLGEQAEAMG----VEIYPGIPASEVL 158
+ R +++WL + + ++Y G+PA +L
Sbjct: 54 ELFRCKRILRWLNSEEYTLRHRRRPKVYRGVPAVAIL 90
>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 26.7 bits (60), Expect = 8.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 25 VVIVGGGPAGM 35
V I+G GPAG+
Sbjct: 5 VAIIGAGPAGL 15
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate
reductase, flavoprotein subunit, Bacillus subtilis
subgroup. This model represents the succinate
dehydrogenase flavoprotein subunit as found in the
low-GC Gram-positive bacteria and a few other lineages.
This enzyme may act in a complete or partial TCA cycle,
or act in the opposite direction as fumarate reductase.
In some but not all species, succinate dehydrogenase
and fumarate reductase may be encoded as separate
isozymes [Energy metabolism, TCA cycle].
Length = 603
Score = 26.7 bits (59), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 25 VVIVGGGPAGMAAAIRLKQL 44
V++VG G AG AA +L +L
Sbjct: 1 VIVVGTGLAGGMAAAKLAEL 20
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 26.6 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V I+G GPAG+ AA L + V + + + GG
Sbjct: 196 VAIIGAGPAGLTAAYYLLRKGH------DVTIFDANEQAGG 230
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP-linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 357
Score = 26.8 bits (60), Expect = 8.3
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 12 FDV--DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV 57
DV + A +VIVG GP L+ LA G +V +
Sbjct: 206 LDVLLEAAAALPDAPLVIVGEGPLEA----ELEALAAALGLLDRVRFL 249
>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family. This
group resembles the zinc-dependent alcohol dehydrogenase
and has the catalytic and structural zinc-binding sites
characteristic of this group. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines. Other MDR members have only a catalytic zinc,
and some contain no coordinated zinc.
Length = 384
Score = 26.7 bits (59), Expect = 8.3
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
F A VV+ G GP G+AA K A K + + E+ + + + V +P +
Sbjct: 201 FRPGAYVVVYGAGPIGLAAIALAK--AAGASKVIAFEISEERRNLAKEMGADYVFNPTKM 258
Query: 79 NELLP 83
+ L
Sbjct: 259 RDCLS 263
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 26.4 bits (59), Expect = 8.3
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
++ G +AA L + + V + ILSG ID L E+L
Sbjct: 280 IIAEPAGALALAA---LLAGKIEPLQGKTVVV----------ILSGGNIDFERLAEVL 324
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 26.5 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 41 LKQLAEKDGKELKVCLVEKAAEVGGHI 67
L+QLA E++ L+EK + GGH+
Sbjct: 20 LEQLAS----EIRTALLEKDSAHGGHV 42
>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 26.6 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKV 54
V +VG GPAG A +L L DG + +
Sbjct: 29 VCVVGSGPAGFYTADKL--LKAHDGARVDI 56
>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like.
This group is related to formaldehyde dehydrogenase
(FDH), which is a member of the zinc-dependent/medium
chain alcohol dehydrogenase family. This family uses
NAD(H) as a cofactor in the interconversion of alcohols
and aldehydes, or ketones. Another member is identified
as a dihydroxyacetone reductase. Like the zinc-dependent
alcohol dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), tetrameric FDHs
have a catalytic zinc that resides between the catalytic
and NAD(H)binding domains and a structural zinc in a
lobe of the catalytic domain. Unlike ADH, where
NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly
bound redox cofactor (similar to nicotinamide proteins).
The medium chain alcohol dehydrogenase family (MDR) has
a NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 345
Score = 26.4 bits (59), Expect = 9.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 25 VVIVGGGPAGMAA 37
V IVG GP G+AA
Sbjct: 170 VAIVGAGPVGLAA 182
>gnl|CDD|219807 pfam08353, DUF1727, Domain of unknown function (DUF1727). This
domain of unknown function is found at the C-terminus
of bacterial proteins which include UDP-N-acetylmuramyl
tripeptide synthase and the related Mur ligase.
Length = 110
Score = 25.6 bits (57), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 12 FDVDMERFEDVADVVIVGGGPAG-MAAAIRLK 42
+DVD E+ ++V G A M A+RLK
Sbjct: 42 WDVDFEKLNQNIRNIVVSGERAYDM--ALRLK 71
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 26.8 bits (59), Expect = 9.1
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI---------------LS 69
V+IVG G AG+AAA +L KV ++E GG + L
Sbjct: 163 VIIVGAGLAGLAAARQLLSFG------FKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLG 216
Query: 70 GAVIDPIALNELLPDWKDLGAPLN 93
G+VI I N L + L PL+
Sbjct: 217 GSVITGIHANPLGVLARQLSIPLH 240
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 26.5 bits (59), Expect = 9.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCL------VEKAAEVGGHILS 69
V+++G AG + K LA K E+ + E A E+GG+ +
Sbjct: 181 VLVIG---AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVP 228
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 26.4 bits (58), Expect = 9.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V I+G G A AAAI+ A + G +V ++E A +GG
Sbjct: 19 VAIIGSGSAAFAAAIK----AAEHGA--RVTIIEGADVIGG 53
>gnl|CDD|239360 cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredoxin (Fd)
family, Sucrase subfamily; composed of proteins with
similarity to a novel plant enzyme, isolated from
potato, which contains a Fd-like domain and exhibits
sucrolytic activity. The putative active site of the
Fd-like domain of the enzyme contains two cysteines and
two histidines for possible binding to iron-sulfur
clusters, compared to four cysteines present in the
active site of Fd.
Length = 97
Score = 25.3 bits (56), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 35 MAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
+AA +R +L E ++V V + VGGH +G VI
Sbjct: 23 LAAELR-AELPEHGPGGVRVWEV---SHVGGHKFAGNVI 57
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 26.3 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA---AEVGGHI 67
+I G G AG++AA+ L + V ++EKA +EVG +
Sbjct: 6 LIAGAGVAGLSAALELAA------RGWAVTIIEKAQELSEVGAGL 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.138 0.409
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,794,103
Number of extensions: 948575
Number of successful extensions: 1350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 303
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)