RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2240
(182 letters)
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 305 bits (782), Expect = e-102
Identities = 119/170 (70%), Positives = 141/170 (82%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
V+MERF + ADVVIVG GPAG++AA RLKQLA + K+L+VCLVEKAA +G H LSGA
Sbjct: 26 GVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGAC 85
Query: 73 IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
+DP A EL PDWK+ GAPLNTPV ED+F LT+ RI +PILPG+PMNNHGNYVVRLGH
Sbjct: 86 LDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGH 145
Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
+V W+GEQAEA+GVE+YPG A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 146 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 109 bits (273), Expect = 3e-29
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 15/171 (8%)
Query: 16 MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
+ A D+VIVG G G++AA L L +L++ +VE GG G +
Sbjct: 71 FADLDAHAETDIVIVGAGSCGLSAAYVLSTLR----PDLRITIVEAGVAPGGGAWLGGQL 126
Query: 74 DP--IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
+ ++G P E + + + +L + + +
Sbjct: 127 FSAMVMRKPADVFLDEVGVPYED---EGDYVVVKHAALFTSTVLSKV-LQRPNVKLFNAT 182
Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
V + + A E + G+ T ++ +
Sbjct: 183 TVEDLITRKHHAESSSSSDD---GEAEDEAKVRIAGVVTNWTLVSMHHDDQ 230
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 72.4 bits (178), Expect = 1e-15
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP 75
ME + DV++VGGGP G AA A+ LK ++EK E+G + G +
Sbjct: 2 METY----DVLVVGGGPGGSTAARY---AAKYG---LKTLMIEKRPEIGSPVRCGEGLSK 51
Query: 76 IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVK 135
LNE + + V + S++ I + N G YV+ K
Sbjct: 52 GILNEADIKADR--SFIANEVKGARI--YGPSEKRPIILQSEKAGNEVG-YVLERDKFDK 106
Query: 136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
L A G +++ PA V+ +
Sbjct: 107 HLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHN 143
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 69.4 bits (169), Expect = 1e-14
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 29/181 (16%)
Query: 16 MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG------HI 67
+ + A DV+IVG G +G++AA + K+ +LKVC++E + GG +
Sbjct: 57 FKDLDKFAVSDVIIVGAGSSGLSAAYVIA----KNRPDLKVCIIESSVAPGGGSWLGGQL 112
Query: 68 LSGAVIDPIA---LNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI---GIPILPGM--- 118
S V+ A L EL ++D G + H F SK + + +
Sbjct: 113 FSAMVMRKPAHLFLQELEIPYEDEGDYVVV-KHAALFISTVLSKVLQLPNVKLFNATCVE 171
Query: 119 -----PMNNHGNYVVRLGHVVKW-LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
P G V G V W L QA + P + + G
Sbjct: 172 DLVTRPPTEKGEVTVA-GVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGV 230
Query: 173 V 173
+
Sbjct: 231 I 231
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 69.1 bits (169), Expect = 2e-14
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 18/156 (11%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHILSGAVIDPIAL 78
E DV+I+GGG AG +AA + L+ + LK+ LV+ G G +
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQ---LSRRG---LKILLVDSKPWNRIGDKPCGDAVSKAHF 57
Query: 79 NELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
++L + G L ++ K Y + + G + + + +
Sbjct: 58 DKLGMPYPK-GEELENKINGIKL-YSPDMQTVWTVNGEG--------FELNAPLYNQRVL 107
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 174
++A+ GVEI+ A + ++ DG VKG +
Sbjct: 108 KEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRR 142
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 68.0 bits (166), Expect = 5e-14
Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 13/163 (7%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE----VGGHILSGA 71
M +V D++++GGGP G A + G +V L+E+ A +G +L
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMR----G--HRVLLLEREAFPRHQIGESLLPAT 54
Query: 72 VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
V A+ L + K G P F + + + Y V
Sbjct: 55 VHGICAMLGLTDEMKRAGFP---IKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERA 111
Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 174
L +E GV++ +VL+ G+ +V G
Sbjct: 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEG 154
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 66.6 bits (162), Expect = 9e-14
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 41/172 (23%)
Query: 16 MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
M A DVV+VG G AG++AA +++ ++V ++E++ GG G +
Sbjct: 31 MTDMITYAETDVVVVGAGSAGLSAAYE---ISKNPN--VQVAIIEQSVSPGGGAWLGGQL 85
Query: 74 DP--IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
I ++ G+ + YVV
Sbjct: 86 FSAMIVRKPAHLFLDEI----------------------------GVAYDEQDTYVVVKH 117
Query: 132 HVV---KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 180
+ + + V+++ + A +++ V G+ T +A++
Sbjct: 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHH 168
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 63.7 bits (155), Expect = 2e-12
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 18/158 (11%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE----VGGHILSGAVIDP 75
+ DV+++G GPAG AA + + KV +VEK +G +L +
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNK------SGFKVKIVEKQKFPRFVIGESLLPRCM--- 53
Query: 76 IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGN-YVVRLGHVV 134
E L + L A + A + K I N + V G+
Sbjct: 54 ----EHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFD 109
Query: 135 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
K L ++A GV++ + +++ + G SV I +
Sbjct: 110 KTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN 147
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 57.7 bits (139), Expect = 2e-10
Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 22/164 (13%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA---EVGGHILSGAV 72
M R V I+GGGPAG A + L +L G V + E++A G L
Sbjct: 21 MTRS----KVAIIGGGPAGSVAGLTLHKL----G--HDVTIYERSAFPRYRVGESLLPGT 70
Query: 73 IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPI----LPGMPMNNHGNYVV 128
+ + L +L + P V
Sbjct: 71 MSILNRLGLQEKIDAQNYVKKP-----SATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQV 125
Query: 129 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
+ K L ++A + G+ ++ P ++V V
Sbjct: 126 KREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG 169
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 57.2 bits (138), Expect = 2e-10
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID--PI 76
+ + I+G GPAG+AA + L+Q D ++E+ VGG S G + I
Sbjct: 7 SRIAIIGAGPAGLAAGMYLEQAGFHD-----YTILERTDHVGGKCHSPNYHGRRYEMGAI 61
Query: 77 ALN----ELLPDWKDLGAPLNTPVHEDKFAY 103
+ G ++ P +F +
Sbjct: 62 MGVPSYDTIQEIMDRTGDKVDGPKLRREFLH 92
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 57.4 bits (137), Expect = 3e-10
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK---AAEVGGHILSGAVID 74
E+ D+V++G G G A A L+QLA + LVE+ E G IL+ V
Sbjct: 32 FTEEAFDIVVIGAGRMGAACAFYLRQLA----PGRSLLLVEEGGLPNEEGATILAPGVWT 87
Query: 75 PIALNELLPDWKDLGAPLNTPVHED 99
+ + +
Sbjct: 88 AQDIP---AGQEAQAEWTREQLLGA 109
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 57.0 bits (138), Expect = 4e-10
Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 32/193 (16%)
Query: 2 LSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
+ + K+ Q ++ DVVI+G G AG+AAA+ + G KV L+EK
Sbjct: 106 VPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDA----G--AKVILLEKEP 159
Query: 62 EVGGH-ILSG----AVIDPIALNELLPDWKDL--------GAPLNTPVHEDKFAYLTKS- 107
GG+ L+ A + D K + G +N P A +
Sbjct: 160 IPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDS 219
Query: 108 ----KRIGIPILPGMPMNNH-------GNYVVRLGH-VVKWLGEQAEAMGVEIYPGIPAS 155
+G + M +G V + L + A G +I
Sbjct: 220 IDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVV 279
Query: 156 EVLYHGDGSVKGI 168
+L G V G+
Sbjct: 280 RILEDASGKVTGV 292
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 55.8 bits (135), Expect = 8e-10
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 40/180 (22%)
Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSGAVIDPIA 77
+ V++VG G AG A++ K+ G V LV+KA GG+ ++S +
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKA----GA--NVILVDKAPFSGGNSMISAGGM-NAV 170
Query: 78 LNEL-------------LPDWKDLGAPLNTPVHEDKFAYLTKS-----KRIGIPILPGMP 119
+ + D G N A + + +G +
Sbjct: 171 GTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANL---DD 227
Query: 120 MNNHGNYVVRLGHV-----------VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI 168
+ G V H + L + A+ G++ +++ + D SV G
Sbjct: 228 LKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGA 287
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 55.8 bits (135), Expect = 9e-10
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSGAVI 73
+ ++ ADVV+ G G AG+AA+I A + G V ++E+ + GG L+G I
Sbjct: 34 TVTEWDYEADVVVAGYGIAGVAASIE----AARAG--ADVLVLERTSGWGGATALAGGFI 87
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 55.5 bits (134), Expect = 1e-09
Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 38/195 (19%)
Query: 3 SFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
KS++ D DVV+VG G AG +AAI G KV L+EK
Sbjct: 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS----G--AKVILIEKEPV 160
Query: 63 VGGH-ILSG----AVIDPIALNELLPDWKDL--------GAPLNTPVHEDKFAYLTKS-- 107
+GG+ L+ A + + D +L G +N L+
Sbjct: 161 IGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN---DPALVKVLSSHSK 217
Query: 108 ------KRIGIP-----ILPGM--PMNNHGNYVVRLGH-VVKWLGEQAEAMGVEIYPGIP 153
+G ++ G + +G VV+ L + A +++
Sbjct: 218 DSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTR 277
Query: 154 ASEVLYHGDGSVKGI 168
EVL G+VKGI
Sbjct: 278 GIEVLKDDKGTVKGI 292
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 53.0 bits (127), Expect = 9e-09
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
VVI+GGG G+AAA +++ ++ L++ LVE + VGG I + G +I+
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIE 61
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 52.2 bits (124), Expect = 1e-08
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
M + DV+++G GP G+ AA RL Q+ +V+ GG
Sbjct: 4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPS-----WMIVDSNETPGGLA 50
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 51.2 bits (122), Expect = 3e-08
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
V D++ VG GP+ +A AI L++ A+ G L+V ++K + H ++ L
Sbjct: 28 AVVHDLIGVGFGPSNIALAIALQERAQAQG-ALEVLFLDKQGDYRWH--GNTLVSQSELQ 84
Query: 80 ELLPDWKDLGAPLNTPVHEDKF-AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
+ KDL L P F YL K R+ N G + +L
Sbjct: 85 --ISFLKDL-VSLRNPTSPYSFVNYLHKHDRLV-------DFINLGTFYPCRMEFNDYLR 134
Query: 139 EQAEAMGVEIYPGIPASEVLYHGDG 163
A + G +
Sbjct: 135 WVASHFQEQSRYGEEVLRIEPMLSA 159
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 50.6 bits (122), Expect = 5e-08
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV++VG G +G+ A RL++L G V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLREL----G--RSVHVIETAGDVGG 53
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 50.3 bits (121), Expect = 7e-08
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D V++G G G+ A + Q G +KV +E +VGG
Sbjct: 11 DAVVIGAGVTGIYQAFLINQA----G--MKVLGIEAGEDVGG 46
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 49.9 bits (120), Expect = 9e-08
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV+VG G AG+ A R + G L V E A+ VGG
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQ----G--LTVRAFEAASGVGG 58
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 50.1 bits (119), Expect = 9e-08
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
VV++GGG +G+AA+ L + KV LVE + +GG I S +
Sbjct: 4 TVVVLGGGISGLAASYHLSRA----PCPPKVVLVESSERLGGWIRSVRGPN 50
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 49.1 bits (118), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D V++G G G+ A +L L +KA GG
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHEL-----GLTTVGFDKADGPGG 46
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 49.1 bits (116), Expect = 2e-07
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
+VI+G GP G+ AA+RL +L K+ L E GG
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKN-----WHLYECNDTPGGLS 49
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 48.8 bits (116), Expect = 2e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
D+++VGGG AA + A+K E K+ LV+KA+
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V+VG G G+ A L ++G ++ ++EK+A +GG
Sbjct: 2 RAVVVGAGLGGLLAGAFLA----RNGH--EIIVLEKSAMIGG 37
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 48.2 bits (114), Expect = 3e-07
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID----- 74
V ++G G +G+AAA +LK L V + E + GG + S G + D
Sbjct: 15 RVAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANT 68
Query: 75 -PIALNELLPDWKDLGAP--LNTPVHEDKFAYLTKSKRIGIPILPGM 118
+ ++ LG P+ ++K + +P P
Sbjct: 69 MTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPID 115
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 48.0 bits (115), Expect = 4e-07
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV I+G G AGM A K+ KV L+E A G
Sbjct: 10 DVAIIGTGTAGMGAYRAAKKHT------DKVVLIEGGA-YGT 44
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 47.5 bits (114), Expect = 6e-07
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
DV+++GGGP+G+ AAI + + V L++K ++G + SG
Sbjct: 28 DVIVIGGGPSGLMAAIGAAE------EGANVLLLDKGNKLGRKLAISG 69
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 47.4 bits (113), Expect = 6e-07
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 46/151 (30%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP 75
M+ DVV++GGG +G++A L++ L +++ A GG
Sbjct: 1 MDSV----DVVVIGGGQSGLSAGYFLRRSG------LSYVILDAEASPGGA--------- 41
Query: 76 IALNELLPDWKDL--GAPLNTPVHEDKFAYLTKSKRIGIPILPGMPM-NNHGNYVVRLGH 132
W+ L +P +PG PM + G Y R
Sbjct: 42 ---------WQHAWHSLHLFSPAGWSS--------------IPGWPMPASQGPYPAR-AE 77
Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163
V+ +L + + + + I V + G+
Sbjct: 78 VLAYLAQYEQKYALPVLRPIRVQRVSHFGER 108
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 46.9 bits (111), Expect = 8e-07
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
+VIVGGG G+AAA ++ +L + L+E +GG + + G I+
Sbjct: 6 RLVIVGGGITGLAAAYYAERA----FPDLNITLLEAGERLGGKVATYREDGFTIE 56
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 46.8 bits (111), Expect = 9e-07
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 13 DVDMERFEDVA-----------DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
+ D E F ++A VVIVG G AG++AA L G +V ++E +
Sbjct: 13 ENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA----G--HQVTVLEASE 66
Query: 62 EVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMN 121
GG + + NE + +LG H Y+ ++ + + +
Sbjct: 67 RPGGRVRT-------YRNEEAGWYANLGPMRLPEKHRIVREYI---RKFDLRL---NEFS 113
Query: 122 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEV 157
+ ++ + + + + SE
Sbjct: 114 QENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEA 149
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 46.7 bits (110), Expect = 1e-06
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
D +IVG G AG A RL G+ +V +V++ +GG+
Sbjct: 31 DYLIVGAGFAGSVLAERLA----SSGQ--RVLIVDRRPHIGGNA 68
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 46.7 bits (112), Expect = 1e-06
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
+ +I+G G AG+ A +L + V + + ++G IL SG
Sbjct: 6 ENIIIGAGAAGLFCAAQLAK------LGKSVTVFDNGKKIGRKILMSG 47
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 46.3 bits (109), Expect = 1e-06
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
D+ +VG G G+ A +++A + K +V ++E+ +GG+
Sbjct: 9 DLFVVGSGFFGLTIA---ERVATQLDK--RVLVLERRPHIGGNA 47
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 46.3 bits (111), Expect = 1e-06
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
E+ DVVI+G G AGM AI + + +V +++ A G I SG
Sbjct: 25 AEKQ----DVVIIGAGAAGMMCAIEAGK------RGRRVLVIDHARAPGEKIRISG 70
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 46.5 bits (111), Expect = 1e-06
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
V++VG GP+G+ AA L + G V L E ++GG + + +
Sbjct: 394 VLVVGAGPSGLEAAR---ALGVR-G--YDVVLAEAGRDLGGRVTQESAL 436
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 46.3 bits (110), Expect = 2e-06
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
+ D ++VGGG +G+ AA L KV L+E +GG S +
Sbjct: 1 MYDAIVVGGGFSGLKAARDLTN------AGKKVLLLEGGERLGGRAYSR------ESRNV 48
Query: 82 LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
++G H + A R GIP + ++ RLG
Sbjct: 49 PGLRVEIGGAYLHRKHHPRLAAE--LDRYGIPTA---AASEFTSFRHRLGPTAVDQA 100
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 46.2 bits (110), Expect = 2e-06
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
V+IVG GP+G AA L E G V L + A ++GGH+ A +
Sbjct: 392 VLIVGAGPSGSEAAR---VLMES-G--YTVHLTDTAEKIGGHLNQVAAL 434
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 46.3 bits (110), Expect = 2e-06
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
D++I+GGG +G AA A+ G LKV LVEKA
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKA 58
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 46.1 bits (109), Expect = 2e-06
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
DV++VG GPAG+AAA A + G +V L+++ AE GG +L
Sbjct: 130 DVLVVGAGPAGLAAAR----EASRSG--ARVMLLDERAEAGGTLLD 169
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 45.8 bits (108), Expect = 2e-06
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
D +IVG G G A LK+L K KV ++EK +GG+
Sbjct: 3 DYIIVGSGLFGAVCANELKKL----NK--KVLVIEKRNHIGGNA 40
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 45.7 bits (109), Expect = 2e-06
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
DV+I G G G A L + +V +VE+A
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQ------GHRVVVVEQARR 40
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 46.0 bits (107), Expect = 2e-06
Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 17/138 (12%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHILSGAVIDPIA--- 77
+ IVGGG G+AA L +LA + V + E + H G +
Sbjct: 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLK 116
Query: 78 --------LNELLPDWK----DLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGN 125
++ P ++GA + + Y + + PI
Sbjct: 117 AGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPT 176
Query: 126 YVVRLGHVVKWLGEQAEA 143
V V +++G +
Sbjct: 177 EFVFGNRVDRYVGSDPKD 194
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 45.6 bits (109), Expect = 3e-06
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVVI+GGGPAG AAI+ QL VEK ++GG
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLG------FNTACVEKRGKLGG 42
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 45.2 bits (108), Expect = 3e-06
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D++++G GP G AAIR QL +KV +VEK +GG
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLG------MKVGVVEKEKALGG 38
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 45.3 bits (107), Expect = 3e-06
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
DV I+GGGPAG+ AA+ L + L V L+E+ +GG +
Sbjct: 110 DVAIIGGGPAGIGAALEL-------QQYLTVALIEERGWLGGDMWL 148
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 45.2 bits (108), Expect = 3e-06
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D++++G GP G AI+ QL +KV +VEK + GG
Sbjct: 27 DLIVIGSGPGGYVCAIKAAQLG------MKVAVVEKRSTYGG 62
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 45.2 bits (107), Expect = 3e-06
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
M+ V I+G G AG+ AI LK D ++ + VG
Sbjct: 2 MQHH----KVAIIGAGAAGIGMAITLKDFGITD------VIILEKGTVGH 41
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 45.2 bits (108), Expect = 3e-06
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVVI+GGGP G AAI+ QL K +EK +GG
Sbjct: 8 DVVIIGGGPGGYVAAIKAAQLG------FKTTCIEKRGALGG 43
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 45.2 bits (108), Expect = 4e-06
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV++GGGP G A+I+ QL +K VEK +GG
Sbjct: 4 DVVVIGGGPGGYVASIKAAQLG------MKTACVEKRGALGG 39
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 45.0 bits (106), Expect = 4e-06
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
+V +VGGG +G+A A L+ L+E +A +GG + + G +++
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRG------TDAVLLESSARLGGAVGTHALAGYLVE 66
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 44.8 bits (107), Expect = 4e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DVV++G G AG A RL + V + + E+GG
Sbjct: 6 DVVVIGAGGAGYHGAFRLAKAK------YNVLMADPKGELGG 41
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 44.4 bits (106), Expect = 6e-06
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ DVV++GGGP G +AA LKV +VE+ +GG
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFAAADEG------LKVAIVERYKTLGG 43
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 44.7 bits (105), Expect = 6e-06
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
M+ ++IVG G +G +L + G +V ++++ +GG+
Sbjct: 1 MKSK----KILIVGAGFSGAVIGRQLA----EKGH--QVHIIDQRDHIGGNSYD 44
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 44.1 bits (105), Expect = 6e-06
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
M V D+ I+GGGP G+ A + V ++E ++GG
Sbjct: 1 MREDTKVYDITIIGGGPVGLFTAFYGGMR------QASVKIIESLPQLGG 44
Score = 29.1 bits (66), Expect = 0.71
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEK 47
D+++F V I+GGG + + A+ L+ +A++
Sbjct: 148 DLQKFAG-RRVAILGGGDSAVDWALMLEPIAKE 179
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 44.4 bits (106), Expect = 6e-06
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
ADV ++G GP G AAI+ QL K +EK +GG
Sbjct: 7 ADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEKNETLGG 43
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 44.6 bits (106), Expect = 6e-06
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D + +GGG AG + L+ + + +V++ +GG
Sbjct: 45 DAIFIGGGAAGRFGSAYLRAMG------GRQLIVDRWPFLGG 80
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 44.4 bits (106), Expect = 7e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
E V ++G G A MAAA++ + +V L+E+ +GG
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQG------AQVTLIERGT-IGG 40
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 44.1 bits (104), Expect = 8e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
DV+IVG GPAG+ A +L +++ C+VE+
Sbjct: 30 PSQVDVLIVGCGPAGLTLAAQLAAFP-----DIRTCIVEQKEG 67
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 44.3 bits (104), Expect = 9e-06
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
E DV+IVG GPAG+ AA L + + +LKV +++K +
Sbjct: 6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRST 47
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 43.6 bits (102), Expect = 1e-05
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
++++G GPAG+ A +LKQ + +VEK E + G V+
Sbjct: 3 ILVIGAGPAGLVFASQLKQA----RPLWAIDIVEKNDE-QEVLGWGVVLPGRPGQHPANP 57
Query: 85 WKDLGAPL-NTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
L AP P + F + ++ + V +V L ++ +
Sbjct: 58 LSYLDAPERLNPQFLEDFKLVHHNEPS-------LMSTGVLLCGVERRGLVHALRDKCRS 110
Query: 144 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179
G+ I P + +A D+ + +G
Sbjct: 111 QGIAIRFESPLL------EHGELPLADYDLVVLANG 140
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V++G G G+ +A RL K G +V + E+ GG
Sbjct: 2 KTVVIGAGLGGLLSAARLS----KAGH--EVEVFERLPITGG 37
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 43.9 bits (104), Expect = 1e-05
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
+ +VG GPAG+A AI A + G + V L + +E+GG I
Sbjct: 376 LAVVGAGPAGLAFAI---NAAAR-GHQ--VTLFDAHSEIGGQFNIAKQIPGKEEFYETLR 429
Query: 85 W-----KDLGAP--LNTPVHED 99
+ + G LN V D
Sbjct: 430 YYRRMIEVTGVTLKLNHTVTAD 451
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 43.7 bits (103), Expect = 1e-05
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
V++VG G +G++AA RL + D + ++E +GG +
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITD-----LLILEATDHIGGRMHK---------TNFAG 51
Query: 84 DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
+LGA V+ K + + + ++ V + + +
Sbjct: 52 INVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQK 111
Query: 144 M 144
Sbjct: 112 R 112
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 43.5 bits (102), Expect = 1e-05
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 10/114 (8%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
V++G G +A+R L E ++ ++E G I
Sbjct: 4 GYVPAVVIGTGYGAAVSALR---LGEAG---VQTLMLEM----GQLWNQPGPDGNIFCGM 53
Query: 81 LLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV 134
L PD + T F +L R P + N+ V +G V
Sbjct: 54 LNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGV 107
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 43.1 bits (102), Expect = 2e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 20 EDVADVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
D DV+IVG GPAG AAA+ R K ++ L+ + GG +L I+
Sbjct: 210 RDAYDVLIVGSGPAGAAAAVYSAR---------KGIRTGLMGE--RFGGQVLDTVDIE 256
Score = 30.0 bits (68), Expect = 0.50
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
V ++GGG +G+ AAI L + E
Sbjct: 357 RVAVIGGGNSGVEAAIDLAGIVEH 380
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 42.9 bits (102), Expect = 2e-05
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
M+ + D++++G GP G AAIR QL LKV VE VGG
Sbjct: 3 PMKTY----DLIVIGTGPGGYHAAIRAAQLG------LKVLAVEAGE-VGG 42
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 42.9 bits (102), Expect = 2e-05
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+VI+GGGPAG AA+ + +V +++ +GG
Sbjct: 4 RIVILGGGPAGYEAALVAATSH---PETTQVTVIDCDG-IGG 41
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 42.8 bits (101), Expect = 2e-05
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 19/120 (15%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
DV IVG GP+G+AAA L++ G L V ++E VGG + + +
Sbjct: 7 DVAIVGAGPSGLAAATALRKA----G--LSVAVIEARDRVGGRTWT---------DTIDG 51
Query: 84 DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
++G V D+ A ++ +G+ Y+ G ++ G+
Sbjct: 52 AVLEIGGQW---VSPDQTALISLLDELGLKTFE-RYREGESVYISSAGERTRYTGDSFPT 107
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 42.5 bits (101), Expect = 3e-05
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
M + DVV++G GP G AAIR QL L +VE GG
Sbjct: 1 MTHY----DVVVLGAGPGGYVAAIRAAQLG------LSTAIVEPKY-WGG 39
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 42.3 bits (100), Expect = 3e-05
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+ D+ I+GGGP G+ AA + + ++E ++GG
Sbjct: 12 HDMRDLTIIGGGPTGIFAAFQCGMN------NISCRIIESMPQLGG 51
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEK 47
+E F+ VVIVGGG + + + L + A
Sbjct: 157 SVEDFKG-KRVVIVGGGDSALDWTVGLIKNAAS 188
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 42.1 bits (100), Expect = 4e-05
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ ++VG GP G AAIR QL KV +VEK +GG
Sbjct: 4 TETLVVGAGPGGYVAAIRAAQLG------QKVTIVEKGN-LGG 39
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 42.1 bits (98), Expect = 5e-05
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----GAVID 74
V+I+G G AG+ AA L Q +D ++E VGG + + G D
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQD-----CLVLEARDRVGGRLQTVTGYQGRKYD 60
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 42.0 bits (99), Expect = 5e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DV+I+GGGP GMA A+ L + +VE+ H
Sbjct: 27 TDVLILGGGPVGMALALDLAHR----Q--VGHLVVEQTDGTITH 64
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 42.2 bits (98), Expect = 5e-05
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 20/123 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----------GA 71
V+I+G G +G+AAA +L+ + V L+E VGG + +
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVATFRKGNYVADLGAM 161
Query: 72 VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI--GIPILPGMPMNNHGNYVVR 129
V+ + N + K + L + + Y + + + N
Sbjct: 162 VVTGLGGNPMAVVSKQVNMEL-AKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSY 220
Query: 130 LGH 132
L H
Sbjct: 221 LSH 223
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 41.8 bits (98), Expect = 5e-05
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
DVV+VGGG +GMAAA L L V ++E VGG +
Sbjct: 5 CDVVVVGGGISGMAAAKLLHD------SGLNVVVLEARDRVGGRTYTLRNQK-------- 50
Query: 83 PDWKDLGA 90
+ DLG
Sbjct: 51 VKYVDLGG 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 6e-05
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 43/127 (33%)
Query: 19 FEDVADVV--------------IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
E + +VV +G GM A I ++A +E +VE+ +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEALQYVVERVGKRT 1837
Query: 65 GHILSGA---------VI--DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIP 113
G ++ V D AL+ + LN ++ K ++I I
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDT-------VTNVLN---------FI-KLQKIDII 1880
Query: 114 ILPGMPM 120
L
Sbjct: 1881 ELQKSLS 1887
Score = 32.7 bits (74), Expect = 0.061
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 43/174 (24%)
Query: 19 FEDVAD-----VVIVGG-GPAGMAAAIRLKQLAE--KDGKELKVCLVEKAAEVGGHILSG 70
F V + V I GG G ++L + + L L++ +AE LS
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTD----DYFEELRDLYQTYHVLVGDLIKFSAET----LSE 197
Query: 71 AVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPI-LPGMPMNNHGNYVVR 129
+ + ++ ++ L P + YL + IPI P + + +YVV
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-----LSIPISCPLIGVIQLAHYVV- 251
Query: 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGS---VKGIATGDVGIAKDGS 180
A+ +G PG E+ + G+ +G+ T V IA+ S
Sbjct: 252 ----------TAKLLGFT--PG----ELRSYLKGATGHSQGLVTA-VAIAETDS 288
Score = 28.1 bits (62), Expect = 1.9
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 138 GEQAEAMGVEIYPGIP-ASEVLYHGDGSVK---GIATGDVGIAKDGSPK 182
G Q + MG+++Y A +V D K G + D I + +P
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVIN-NPV 1670
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 41.3 bits (98), Expect = 6e-05
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
++I+GGGP G AAIR QL + LVE A +GG
Sbjct: 7 TLLIIGGGPGGYVAAIRAGQLG------IPTVLVEGQA-LGG 41
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 41.6 bits (98), Expect = 6e-05
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DVV+VGGGP G+ A L+ G + ++EK E GH
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAG----G--VGALVLEKLVEPVGH 87
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 41.0 bits (97), Expect = 7e-05
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
V E E DVVIVG G AG +AA+ R V +++KA GG
Sbjct: 7 AVSSEEKERDFDVVIVGAGAAGFSAAVYAAR---------SGFSVAILDKAV-AGGLTA 55
Score = 29.8 bits (68), Expect = 0.41
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
VV +GGG +G AAI + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKN 180
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 41.5 bits (98), Expect = 7e-05
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
A V++VG GPAGM A L+ G ++V ++E+ E G
Sbjct: 12 AAVIVVGAGPAGMMLAGELRLA----G--VEVVVLERLVERTGE 49
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 41.1 bits (97), Expect = 7e-05
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
A V++VG GPAG+ A L+ G + V ++E+ + G
Sbjct: 13 ASVIVVGAGPAGLMLAGELRLG----G--VDVMVLEQLPQRTGE 50
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 41.2 bits (97), Expect = 8e-05
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
DV++VG G G++ A+ L + G ++V +VE+ + +
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQ----G--VRVLVVERRPGLSPY 43
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 41.3 bits (98), Expect = 8e-05
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
DV+++G GP G AAI+ QL LK L+EK G
Sbjct: 5 DVIVIGAGPGGYVAAIKSAQLG------LKTALIEKYKGKEG 40
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 41.1 bits (95), Expect = 8e-05
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----------GA 71
V+I+G G +G+AAA +L+ + V L+E VGG + +
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVATFRKGNYVADLGAM 332
Query: 72 VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI 110
V+ + N + K + L + + Y + +
Sbjct: 333 VVTGLGGNPMAVVSKQVNMEL-AKIKQKCPLYEANGQAV 370
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 40.8 bits (94), Expect = 1e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ I+G G AG++AA L +V L +K+ GG
Sbjct: 3 VPIAIIGTGIAGLSAAQALTA------AGHQVHLFDKSRGSGG 39
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 40.5 bits (95), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
D V+VG G G+AAA LK + V +V+ G
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGS-----VLVVDAGHAPGSG 62
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 39.8 bits (94), Expect = 2e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D ++G GPAG+ A++ L ++ L +
Sbjct: 8 DCAVIGAGPAGLNASL---VLG---RARKQIALFDN 37
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D DV+IVG GP G+ A + L V+ E GG
Sbjct: 3 ADHTDVLIVGAGPTGLFAGFYVGMR------GLSFRFVDPLPEPGG 42
Score = 29.5 bits (67), Expect = 0.59
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEK 47
F+ V+IVGGG + + A+ L A +
Sbjct: 146 SKAEFQG-KRVLIVGGGDSAVDWALNLLDTARR 177
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 39.8 bits (94), Expect = 2e-04
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 14/45 (31%)
Query: 24 DVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGG 65
DV+IVG GPAG AAAI R K ++ L+ + GG
Sbjct: 3 DVLIVGSGPAGAAAAIYSAR---------KGIRTGLMGE--RFGG 36
Score = 29.0 bits (66), Expect = 0.76
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
V ++GGG +G+ AAI L + E
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEH 169
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 39.5 bits (93), Expect = 3e-04
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D++++GGG GMAAA R + KV LVEK + +GG
Sbjct: 4 DLIVIGGGSGGMAAARRAARH----NA--KVALVEK-SRLGG 38
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 39.4 bits (93), Expect = 3e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA 71
D +++G G G+A A + LA +V + E A +G S
Sbjct: 6 DCIVIGAGVVGLAIA---RALAAGG---HEVLVAEAAEGIGTGT-SSR 46
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 39.4 bits (93), Expect = 3e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV+I+GG AG++AA+ QL + LV+
Sbjct: 4 DVIIIGGSYAGLSAAL---QLG---RARKNILLVDA 33
Score = 26.7 bits (60), Expect = 3.9
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEK 47
+ ++ P + A+ L E
Sbjct: 143 KIGVIAASPMAIHHALMLPDWGET 166
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 39.7 bits (91), Expect = 3e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKA 60
+VIVGGG AG MAA+ L ++ + L+E A
Sbjct: 8 IVIVGGGTAGWMAASY----LVRALQQQANITLIESA 40
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 39.1 bits (92), Expect = 3e-04
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
AD +++G G AG + L +V ++E+ A+ G H
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAHG-------RVVVLEREAQPGYH 46
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 39.2 bits (91), Expect = 4e-04
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
DV+++GGG G+ A L K L+E +GG S +
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTV------AGFKTLLLEARDRIGGRSWSS---------NI 83
Query: 82 LPDWKDLGAPLNTPVHEDKFAYLTK 106
++G + +T+
Sbjct: 84 DGYPYEMGGTWVHWHQSHVWREITR 108
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/16 (62%), Positives = 16/16 (100%)
Query: 24 DVVIVGGGPAGMAAAI 39
DV++VGGGP+G++AA+
Sbjct: 3 DVIVVGGGPSGLSAAL 18
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 39.0 bits (89), Expect = 4e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
+A V+IVG G G A L++ L + + +KA + GG + +
Sbjct: 1 MAQVLIVGAGMTGSLCAALLRRQTSGP---LYLAVWDKADDSGGRMTT 45
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 38.9 bits (89), Expect = 4e-04
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKA 60
VVIVGGG AG M A+ L + V LVE
Sbjct: 5 VVIVGGGTAGWMTASY----LKAAFDDRIDVTLVESG 37
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 39.0 bits (90), Expect = 5e-04
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
+ DVVIVG GP G A ++L KV + + G + + +
Sbjct: 44 DIKYDVVIVGSGPIGCTYA---RELVGAG---YKVAMFDIGEIDSGLKIGAHKKNTVEYQ 97
Query: 80 ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNY 126
+ + + ++ V + + + N N
Sbjct: 98 KNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNP 144
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 39.0 bits (89), Expect = 5e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVE 58
++IVGGG AG MAA+ L + + L++
Sbjct: 28 ILIVGGGTAGWMAASY----LGKALQGTADITLLQ 58
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 38.7 bits (90), Expect = 5e-04
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
VV++GGGPAG+ +A L++ G KV ++E GG + +
Sbjct: 13 SVVVLGGGPAGLCSAFELQKA----G--YKVTVLEARTRPGGRVWT 52
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 38.9 bits (89), Expect = 5e-04
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKD-----GKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
++IVGGG AG + A + + +L + L+E + G +
Sbjct: 10 IIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRST 69
Query: 79 NELLP 83
+
Sbjct: 70 LSKIG 74
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 38.5 bits (90), Expect = 6e-04
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA---VIDPIALNE 80
V I+G GP+G+ L + G + ++E+ ++L V++ + +
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKA----G--IDNVILERQTPD--YVLGRIRAGVLEQGMV-D 54
Query: 81 LLPDWKDLGAPLN---TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG--HVVK 135
LL + + + A+ + +RI + L G V G V +
Sbjct: 55 LL-REAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGK------TVTVYGQTEVTR 107
Query: 136 WLGEQAEAM-GVEIYPGIPASEVLYHGDGS 164
L E EA +Y +EV H
Sbjct: 108 DLMEAREACGATTVYQA---AEVRLHDLQG 134
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 38.2 bits (89), Expect = 7e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
V+++GG + AA LK+L G + V ++ K+
Sbjct: 4 VLVLGGRFGALTAAYTLKRLV---GSKADVKVINKS 36
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 38.2 bits (89), Expect = 7e-04
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
VVI+G G GM AA ++ E G +V L+
Sbjct: 7 VVILGAGTGGMPAA---YEMKEALGSGHEVTLISAN 39
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 38.3 bits (90), Expect = 7e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 EDVADVVIVGGGPAGMAAAI 39
+ DV+IVG GPA AA+
Sbjct: 13 GEKFDVIIVGLGPAAYGAAL 32
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 38.4 bits (90), Expect = 8e-04
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
M+ F+ AD+ IVG G AG+ AAI A+ K+ L+ K
Sbjct: 1 MQTFQ--ADLAIVGAGGAGLRAAI---AAAQA-NPNAKIALISK 38
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 38.2 bits (89), Expect = 8e-04
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
VV+VGGG G AA +K ++V L+E
Sbjct: 5 VVVVGGGTGGATAAKYIK----LADPSIEVTLIEPN 36
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 37.5 bits (88), Expect = 0.001
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 20 EDVADVVIVGGGPAGMAAAI 39
+ DV I+GGGPAG++A +
Sbjct: 2 NAMLDVAIIGGGPAGLSAGL 21
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 37.7 bits (87), Expect = 0.001
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ I+G GP+GMA + EK + ++ EK A+ GG
Sbjct: 5 IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG 45
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 37.0 bits (86), Expect = 0.002
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
VV++GGG G+A A L+ +LK+ L+
Sbjct: 5 VVVIGGGVGGIATAYNLR----NLMPDLKITLISDR 36
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 36.1 bits (82), Expect = 0.004
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSGAVIDPIALNELLP 83
++IVG G AG+ A L + V ++E A VGG I + P
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAG------HDVTILEANANRVGGRIKTFHAKKGEPSPFADP 100
Query: 84 DWK-DLGAPLNTPVHEDKFAYLTKSKRIGIPILP 116
+ GA H A + ++G+
Sbjct: 101 AQYAEAGAMRLPSFHPLTLALI---DKLGLKRRL 131
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 35.9 bits (82), Expect = 0.005
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
D +++G G G AA+R L + + +VE G + I
Sbjct: 9 GDRVPALVIGSGYGGAVAALR---LTQAG---IPTQIVEM----GRSWDTPGSDGKIFCG 58
Query: 80 ELLPDWKDLGAPLNTPVHEDKF 101
L PD + + T F
Sbjct: 59 MLNPDKRSMWLADKTDQPVSNF 80
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 35.7 bits (83), Expect = 0.005
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
+ GGG AG+ AAI LKQ G V L EK++E+
Sbjct: 14 AEVAGGGFAGLTAAIALKQN----G--WDVRLHEKSSELR 47
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 35.6 bits (83), Expect = 0.005
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
+ V++GGG G A A L K+ K L E +GG
Sbjct: 18 YEAVVIGGGIIGSAIAYYLA----KENK--NTALFES-GTMGGR 54
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 35.6 bits (82), Expect = 0.006
Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 60/204 (29%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK------------------AAEVG 64
+ ++IVG G G + A+ L + + V +++ + +
Sbjct: 7 SSLLIVGAGTWGTSTALHLARRGYTN-----VTVLDPYPVPSAISAGNDVNKVISSGQYS 61
Query: 65 GHILSGAVIDPIALNELLPDWK--DLGAPL----------NTPVHEDKFAYLTKSKRIGI 112
+ V + +A E WK L P + D+ +
Sbjct: 62 NNKDEIEVNEILAE-EAFNGWKNDPLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPN 120
Query: 113 PI-----------LPGMPM-----------NNHGNYVVRLGHVVKWLGEQAEAMGVEIYP 150
+ P + G + + +A+ MGV+
Sbjct: 121 LVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVT 180
Query: 151 GIPASEV--LYHGDGSVKGIATGD 172
G P V L + VKG T D
Sbjct: 181 GTPQGRVVTLIFENNDVKGAVTAD 204
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 35.2 bits (82), Expect = 0.006
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 20 EDVADVVIVGGGPAGMAAAI 39
DVVI+GGGPAG+ AAI
Sbjct: 6 AHDYDVVIIGGGPAGLTAAI 25
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 35.7 bits (83), Expect = 0.006
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
DV+I+G G AG++ A+RL + +V ++ K
Sbjct: 9 CDVLIIGSGAAGLSLALRL-------ADQHQVIVLSKGP 40
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A*
2c7g_A*
Length = 456
Score = 35.6 bits (82), Expect = 0.006
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 25 VVIVGGGPAGMAAAIRL-KQLAEKDGKELKVCLVEKAAEVGG 65
+ IVG GP+ AA L K + ++ V ++E G
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 47
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 35.4 bits (82), Expect = 0.007
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
+ +VGG +G+ AA+ L+ G + V + E++ +
Sbjct: 8 IAVVGGSISGLTAALMLRDA----G--VDVDVYERSPQ 39
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 35.2 bits (82), Expect = 0.008
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 24 DVVIVGGGPAGMAAAI 39
D I+GGGPAG++A +
Sbjct: 3 DCAIIGGGPAGLSAGL 18
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 35.3 bits (82), Expect = 0.008
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
+V+VGG G + A RL++L+E E ++ +VE+ +
Sbjct: 39 IVVVGGVAGGASVAARLRRLSE----EDEIIMVERGEYI 73
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 35.3 bits (82), Expect = 0.008
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
++I+GG G +AA R ++L+E ++ + E+ V
Sbjct: 4 ILIIGGVAGGASAAARARRLSE----TAEIIMFERGEYV 38
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 35.3 bits (81), Expect = 0.008
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ I+G GP+G+ A K L + +V L E+ GG
Sbjct: 9 IAIIGAGPSGLVTA---KALLA-EKAFDQVTLFERRGSPGG 45
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 35.0 bits (81), Expect = 0.009
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
D++I G G G++ A+ L Q V L+E ++E+
Sbjct: 6 DILIAGAGIGGLSCALALHQAGIGK-----VTLLESSSEIR 41
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 34.8 bits (81), Expect = 0.011
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
VI+GG AGM+AA+++ + E V +EK
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDE----NANVVTLEK 69
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 34.9 bits (81), Expect = 0.011
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
+ + E D V++G G AGM AA+++ Q L+ K
Sbjct: 1 MKLPVRE--FDAVVIGAGGAGMRAALQISQ------SGQTCALLSK 38
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 34.6 bits (80), Expect = 0.011
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
+++G G G++AA+ LKQ G + + E E+
Sbjct: 25 KAIVIGAGIGGLSAAVALKQS----G--IDCDVYEAVKEIK 59
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 34.6 bits (80), Expect = 0.011
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D +++GGG AG+ AA+ +K L ++
Sbjct: 7 DSLVIGGGLAGLRAAV---ATQQKG---LSTIVLSL 36
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 34.8 bits (81), Expect = 0.012
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
VV++G G AA R K+L E V ++++
Sbjct: 6 VVVIGAVALGPKAACRFKRLDP----EAHVTMIDQ 36
Score = 28.7 bits (65), Expect = 1.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 20 EDVADVVIVGGGPAG--MAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
+V+ VIVGGG G MA + LA+ G + +VE A ++
Sbjct: 157 GEVSKAVIVGGGFIGLEMAVS-----LADMWGID--TTVVELADQI 195
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 34.4 bits (80), Expect = 0.013
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
VVI+GGG AGM+AA R+K+L E V + E V
Sbjct: 6 VVIIGGGAAGMSAASRVKRLKP----EWDVKVFEATEWV 40
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 34.3 bits (79), Expect = 0.013
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
V I+GGGP G+ A L+Q
Sbjct: 29 VAIIGGGPVGLTMAKLLQQ 47
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 34.4 bits (80), Expect = 0.013
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
+V+VG G A ++++L + E + + EK ++
Sbjct: 4 IVVVGAVAGGATCASQIRRLDK----ESDIIIFEKDRDM 38
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 34.7 bits (79), Expect = 0.013
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
++VG GP G+ AA+ L L +V LVEK + H
Sbjct: 94 KCLVVGAGPCGLRAAVELALLG------ARVVLVEKRIKFSRH 130
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 34.4 bits (80), Expect = 0.014
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
+VI+G AG++AAI ++ + ++ L++K A V
Sbjct: 5 IVIIGASFAGISAAIASRKKYP----QAEISLIDKQATV 39
Score = 26.7 bits (60), Expect = 5.7
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
+ E+ V ++G GP GM A L ++ K V + E +
Sbjct: 141 VPLLENSQTVAVIGAGPIGMEAIDFLVKM----KKT--VHVFESLENL 182
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 34.4 bits (80), Expect = 0.014
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
V ++G GPAG+AAA ++L G +V + ++ +GG
Sbjct: 125 VGVIGAGPAGLAAA---EELR-AKG--YEVHVYDRYDRMGG 159
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 34.4 bits (80), Expect = 0.015
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D +++GGG G+A+A R G K LVE A +GG
Sbjct: 13 DYLVIGGGSGGVASARRAASY----GA--KTLLVEAKA-LGG 47
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 34.4 bits (80), Expect = 0.015
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+ ++G G G+ AA A GK +V + E+ +GG
Sbjct: 28 DLFVIGSGSGGVRAARL----AGALGK--RVAIAEE-YRIGG 62
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 34.4 bits (80), Expect = 0.016
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D +++GGG G+A+A R +L G + +VE +GG
Sbjct: 22 DYLVIGGGSGGLASARRAAEL----GA--RAAVVESHK-LGG 56
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 34.1 bits (77), Expect = 0.017
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
+ IVG G AG+ + L+Q ++ V + +++ +A N
Sbjct: 25 IGIVGAGTAGLHLGLFLRQ------HDVDVTVYTDRK--PDEYSGLRLLNTVAHN 71
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 34.0 bits (79), Expect = 0.017
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
V++VG AG A + + V E
Sbjct: 3 VIVVGCTHAGTFAVKQTIADHP----DADVTAYEM 33
Score = 25.9 bits (58), Expect = 9.2
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
E + I+G G G A V L++ V
Sbjct: 143 FEEAPKAKTITIIGSGYIGAELAEAYSNQ----NYN--VNLIDGHERV 184
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 34.2 bits (79), Expect = 0.017
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D V+VG G AG+ AA L + V K
Sbjct: 20 DAVVVGAGGAGLRAAFGLSE------AGFNTACVTK 49
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 34.0 bits (79), Expect = 0.018
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D+ ++GGG G+ + A GK KV + E+ GG
Sbjct: 7 DLFVIGGGSGGVRSGRL----AAALGK--KVAIAEE-FRYGG 41
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 34.1 bits (79), Expect = 0.018
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
D +IVGGG G+A A LA K+ V ++EK + G
Sbjct: 22 YDAIIVGGGGHGLATA---YFLA-KNHGITNVAVLEK-GWLAGG 60
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 34.0 bits (79), Expect = 0.020
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
V+++G G A L L + ++ EK
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHP----DAEIQWYEK 33
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 34.0 bits (79), Expect = 0.021
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D++ +GGG G+A A + A GK +V L+E +GG
Sbjct: 6 DLIAIGGGSGGLAVAEK----AAAFGK--RVALIES-KALGG 40
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 34.1 bits (79), Expect = 0.021
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D +IVG GP G+ AA RL + GK KV L+E+
Sbjct: 9 DYIIVGAGPGGIIAADRLSE----AGK--KVLLLER 38
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 33.8 bits (77), Expect = 0.022
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
+++G GP G+ A + L Q +VE+ EV
Sbjct: 109 RPIVIGFGPCGLFAGLVLAQ------MGFNPIIVERGKEVR 143
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 33.7 bits (77), Expect = 0.023
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 53 KVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPV 96
+ LV+ + G I ++DP AL DW D + V
Sbjct: 56 EDWLVQFKRD-GAGI---GLLDPQALAAAGADWNDFNRAVGDAV 95
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 33.6 bits (77), Expect = 0.025
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
+ DVV+VGGGP G+A A Q+A + G +V ++E+
Sbjct: 3 ESYDVVVVGGGPVGLATAW---QVA-ERG--HRVLVLER 35
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 33.4 bits (77), Expect = 0.027
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
DV++VG G GMAA QLA K G +K LV+
Sbjct: 4 FDVIVVGAGSMGMAAG---YQLA-KQG--VKTLLVDA 34
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 33.1 bits (76), Expect = 0.034
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D++I+G G G AA + G L V + +
Sbjct: 3 YDLIIIGSGSVGAAAGY---YAT-RAG--LNVLMTDA 33
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 33.3 bits (77), Expect = 0.035
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D+V++G G G+ A A K +V +++
Sbjct: 5 DLVVIGAGSGGLEAGWN---AASLHKK--RVAVID 34
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 32.9 bits (75), Expect = 0.041
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ +VG GPAG A + L K V + EK G
Sbjct: 9 ICVVGSGPAGFYTA---QHLL-KHHSRAHVDIYEKQLVPFG 45
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 33.1 bits (76), Expect = 0.046
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D++++GGG G+AA + G K +++
Sbjct: 109 DLIVIGGGSGGLAAGKEAAKY----GA--KTAVLD 137
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 32.9 bits (76), Expect = 0.049
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
+++V++GGG G+ A +LA K G+ +V ++EK
Sbjct: 6 SEIVVIGGGIVGVTIA---HELA-KRGE--EVTVIEK 36
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 32.5 bits (75), Expect = 0.057
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
D+V++G G G+ A A GK +V +V+
Sbjct: 9 DLVVIGAGSGGLEAGWN---AATLYGK--RVAVVDV 39
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 32.5 bits (75), Expect = 0.069
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
D++++GGG AG+A A A +G +V ++ V
Sbjct: 11 DLIVIGGGSAGLACAKE----AVLNGA--RVACLDFVKPTPTLGTKWGV 53
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.4 bits (74), Expect = 0.070
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
+ +V + I+GGG G A L + A G +V + G IL +
Sbjct: 175 KISREVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEKGNMGKILPEYL 228
Score = 30.5 bits (69), Expect = 0.34
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQ 43
+++GGG A AAA ++
Sbjct: 12 VPFLLIGGGTAAFAAARSIRA 32
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 32.5 bits (75), Expect = 0.072
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
D + +GGG G+A+ R A G+ K L+E A E+GG
Sbjct: 6 DYIAIGGGSGGIASINR----AAMYGQ--KCALIE-AKELGG 40
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 32.1 bits (74), Expect = 0.076
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D++++GGG G+A A QL GK KV + +
Sbjct: 8 DLLVIGGGSGGLACAKEAAQL----GK--KVAVAD 36
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 31.8 bits (73), Expect = 0.10
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D++I+GGG G+AAA Q GK KV +++
Sbjct: 34 DLIIIGGGSGGLAAAKEAAQY----GK--KVMVLD 62
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 31.7 bits (73), Expect = 0.11
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 20 EDVADVVIVGGGPAGMAAAI 39
V DV+++G GPAG AA+
Sbjct: 12 HPVRDVIVIGSGPAGYTAAL 31
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.4 bits (72), Expect = 0.14
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ I+G G AG++A + L+ + K + GG
Sbjct: 2 IYIIGSGIAGLSAGVALR-------RAGKKVTLISKRIDGG 35
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 31.4 bits (70), Expect = 0.15
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 4 FGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
S + + + E + DV+I+G G + L GK+ + ++++
Sbjct: 7 HSSGRENLY-FQGEHY----DVIILGTGLKECILSGLLS----HYGKK--ILVLDRNPYY 55
Query: 64 GGH 66
GG
Sbjct: 56 GGE 58
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 31.0 bits (71), Expect = 0.17
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D +I GGG G+ A + L E + K +KV ++E
Sbjct: 26 DYIIAGGGLTGLTVAAK---LTE-NPK-IKVLVIE 55
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD;
1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.0 bits (71), Expect = 0.19
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQ 43
M + A VV++G G A ++ L+Q
Sbjct: 1 MSQEALKAPVVVLGAGLASVSFVAELRQ 28
Score = 26.4 bits (59), Expect = 6.8
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 17 ERFEDVADVVIVGGGPAGM--AAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
+ ++IVGGG G+ AA R + V LVE + +
Sbjct: 140 AGLRPQSRLLIVGGGVIGLELAATAR--------TAGVHVSLVETQPRLMSRAAPATL 189
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 30.9 bits (70), Expect = 0.21
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
+ ++G GPA ++ A L +L D + + EK VGG
Sbjct: 190 IALLGAGPASISCASFLARLGYSD-----ITIFEKQEYVGG 225
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 30.9 bits (71), Expect = 0.21
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 16 MERFEDVADVVIVGGGPAG----MAAA 38
+ R + DV++VG G AG +A A
Sbjct: 15 VPRGSHMYDVIVVGAGHAGCEAALAVA 41
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 30.6 bits (70), Expect = 0.23
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D +I GGG G+ A R L E + + V ++E
Sbjct: 21 DYIIAGGGLTGLTTAAR---LTE-NPN-ISVLVIE 50
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 30.6 bits (70), Expect = 0.29
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 18/48 (37%)
Query: 16 MERFEDVADVVIVGGGP--AGMA--AAIRLKQLAEKDGKELKVCLVEK 59
ME D++++GGG AG+A AA R G L V ++E
Sbjct: 1 METK----DLIVIGGGINGAGIAADAAGR--------G--LSVLMLEA 34
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 30.3 bits (69), Expect = 0.30
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 29 GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
G P+ + + +++ L+ AA G +L+G
Sbjct: 355 LGDPSKNLLLAEVINIIKRED------LLSNAAHAGKVLLTG 390
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase,
covalently linked FAD, C4A-adduct, flavoprotein,
oxidoreductase; HET: FAO; 1.86A {Arthrobacter
globiformis} PDB: 3nne_A* 3ljp_A*
Length = 546
Score = 30.6 bits (70), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
+ D ++VGGG AG A A RL + D + V LVE
Sbjct: 11 DREFDYIVVGGGSAGAAVAARLSE----DPA-VSVALVE 44
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 30.1 bits (69), Expect = 0.35
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D+VIVGGG AG A R L+E D +V L+E
Sbjct: 19 DIVIVGGGSAGSLLAAR---LSE-DPD-SRVLLIE 48
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 30.2 bits (67), Expect = 0.35
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
DV+++G G + + +GK KV +++ GG S
Sbjct: 8 DVIVLGTGLTECILSGIMS----VNGK--KVLHMDRNPYYGGESSS 47
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 30.2 bits (69), Expect = 0.38
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D VIVGGG AG A R LAE + + V +VE
Sbjct: 8 DFVIVGGGTAGNTVAGR---LAE-NPN-VTVLIVE 37
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 29.9 bits (68), Expect = 0.42
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 29 GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
GG M A R+ ++ E +G L E+A + G ++ +
Sbjct: 332 GGNLTDMVRARRILEVIEAEG------LFERAVQHGKYLRAR 367
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 29.8 bits (68), Expect = 0.44
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 23 ADVVIVGGGPAGMAAAI 39
+ IVG GPA AAI
Sbjct: 9 TRLCIVGSGPAAHTAAI 25
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 29.8 bits (68), Expect = 0.49
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-PIALNELL 82
D V+VG G AG A R L E D + V ++E A G + + P+ L+
Sbjct: 4 DYVVVGAGNAGNVVAAR---LTE-DPD-VSVLVLE-A---GVSDENVLGAEAPLLAPGLV 54
Query: 83 P----DWK 86
P DW
Sbjct: 55 PNSIFDWN 62
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 29.4 bits (67), Expect = 0.55
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A + G V DP+ NEL + GA LN
Sbjct: 104 AVRIKGRTEVAVVYDPM-RNELFTATRGQGAQLN 136
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 29.7 bits (66), Expect = 0.61
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
VV++G G G+++A+ L +
Sbjct: 8 RVVVLGSGVIGLSSALILAR 27
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 29.4 bits (67), Expect = 0.61
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 23 ADVVIVGGGPAGMAAAI 39
+ ++I+G GPAG AA+
Sbjct: 6 SKLLILGSGPAGYTAAV 22
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 29.0 bits (66), Expect = 0.65
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A E G I++G + +PI +EL + GA N
Sbjct: 110 ALESQGKIVAGVIYNPI-NDELFTAERGSGAFFN 142
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.66
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 38 AIRL------KQLAEKD--GKELKVCLVEKAAE 62
+IR K+L E D K ++ EKA +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET:
FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 29.4 bits (67), Expect = 0.66
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 23 ADVVIVGGGPAGMAAAI 39
V I+G GPA AAI
Sbjct: 23 NKVTIIGSGPAAHTAAI 39
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.1 bits (66), Expect = 0.75
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 25 VVIVGGGPAGMAAAI-RLKQLAEKDGKELKVCLVEK 59
+V+VG AG A L + ++ + ++
Sbjct: 38 IVVVGANHAGTACIKTMLTNYGD----ANEIVVFDQ 69
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.1 bits (66), Expect = 0.81
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQ 43
ADVVIVG G G AAI L+Q
Sbjct: 10 ADVVIVGAGHGGAQAAIALRQ 30
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis}
Length = 299
Score = 28.8 bits (65), Expect = 0.84
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A+VGG ++GAV D + LGA L
Sbjct: 124 GAQVGGITVAGAVADVA-ARTVYSAATGLGAHLT 156
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 28.6 bits (64), Expect = 0.88
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKD--GKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
A V+I+G G G A L+ K G E++ ++ G +++SG DP
Sbjct: 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWER 99
Query: 81 LLP 83
+L
Sbjct: 100 ILD 102
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
G + GAV P ++L K LGA +N
Sbjct: 106 GLVKGEEPIVGAVYLPY-FDKLYWGAKGLGAYVN 138
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 28.7 bits (65), Expect = 1.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 24 DVVIVGGGPAGMAAAIRLKQ 43
+VVIVG G AG+ A L+
Sbjct: 6 NVVIVGTGLAGVEVAFGLRA 25
Score = 26.4 bits (59), Expect = 6.2
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 17 ERFEDVADVVIVGGGPAGM--AAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
+ +V++GGG G+ AA + V L++ AA V + + V
Sbjct: 144 RQLIADNRLVVIGGGYIGLEVAATAI--------KANMHVTLLDTAARVLERVTAPPV 193
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 2wwl_I
3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I
3r8o_I 4a2i_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I
2i2u_I ...
Length = 127
Score = 27.8 bits (63), Expect = 1.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 8 KSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
++ D+ + + GGG +G A AIR
Sbjct: 54 MVEKLDLY---------ITVKGGGISGQAGAIRH 78
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 28.6 bits (65), Expect = 1.3
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 5 GSSK-SDQFDVDMERFEDVADVVIVGGGPAGMA----AAIRL---KQLAEKDGKELKVCL 56
G SK S + V + D +++IVGG G+A A L E+D +
Sbjct: 193 GGSKVSTKLSV-LNNLLDKVEILIVGG---GIANTFIKAEGFDVGNSLYEQDLVAEATEI 248
Query: 57 VEKAAEVGGHIL 68
+ KA +G +I
Sbjct: 249 LAKAKALGVNIP 260
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 28.7 bits (63), Expect = 1.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
D E + DV+++G G + L DGK KV ++K GG
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLLS----VDGK--KVLHIDKQDHYGGE 49
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 28.4 bits (64), Expect = 1.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 14/40 (35%)
Query: 24 DVVIVGGGPAGMA----AAIRLKQLAEKDGKELKVCLVEK 59
D++++GGG G A +R G ++ LVE
Sbjct: 20 DLLVIGGGITGAGIALDAQVR--------G--IQTGLVEM 49
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.5 bits (63), Expect = 1.4
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
VV++G G G++ A+ + +
Sbjct: 3 VVVIGAGVIGLSTALCIHE 21
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic
hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas
putida}
Length = 410
Score = 28.3 bits (64), Expect = 1.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQ 43
V I+G G G A L+
Sbjct: 3 THVAIIGNGVGGFTTAQALRA 23
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.5 bits (64), Expect = 1.4
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
+VI+G G G A L + + ++++
Sbjct: 5 PRIVIIGAGIVGTNLADELVTRGWNN-----ITVLDQ 36
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT 170
V+ L ++ E+ GV + + G V G+ T
Sbjct: 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGR-VTGVQT 189
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 28.2 bits (63), Expect = 1.4
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQL 44
+ V ++G G GM A L
Sbjct: 158 SQVAVLGLGRTGMTIARTFAAL 179
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.4 bits (63), Expect = 1.4
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
A+V ++G G GM+ A + L G ++KV E + + L
Sbjct: 156 ANVAVLGLGRVGMSVARKFAAL----GAKVKVGARESDLLARIAEMGMEPFHISKAAQEL 211
Query: 83 PD 84
D
Sbjct: 212 RD 213
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 28.2 bits (64), Expect = 1.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 16 MERFEDVADVVIVGGGPAG----MAAA 38
M D DVV++GGG AG +AAA
Sbjct: 21 MAWVVDEFDVVVIGGGHAGIEAALAAA 47
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 24 DVVIVGGGPAGMA----AAIRLKQLAEKDGKELKVCLVEK 59
D++I+GGG G AA G +K L+E
Sbjct: 34 DLLIIGGGITGAGVAVQAAAS--------G--IKTGLIEM 63
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I
1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I
1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I*
1n34_I ...
Length = 128
Score = 27.4 bits (62), Expect = 1.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
+FD + + GGG +G AI+L
Sbjct: 57 GRFDAY---------ITVRGGGKSGQIDAIKL 79
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_I
Length = 145
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 9/37 (24%)
Query: 5 GSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
G K D+ + + G G AIR
Sbjct: 58 GQQKFANLDIR---------IRVRGSGYTSQVYAIRQ 85
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 27.9 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A G + G V P LNE L + GA N
Sbjct: 99 AYVENGEVKLGVVHAPA-LNETLYAEEGSGAFFN 131
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 197
Score = 27.8 bits (62), Expect = 1.8
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
+DV V GGG +G A AI L
Sbjct: 126 TNYDVF---------VKAHGGGLSGQAQAISL 148
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 146
Score = 27.2 bits (61), Expect = 1.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 9/37 (24%)
Query: 5 GSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
G + D+ V + GGG AIR
Sbjct: 59 GKERFAGVDIR---------VRVKGGGHVAQIYAIRQ 86
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 27.8 bits (63), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 23 ADVVIVGGGPAGMAAA 38
ADVV++G G AG AA
Sbjct: 169 ADVVVIGAGTAGYNAA 184
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I
3jyv_I*
Length = 143
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 9/37 (24%)
Query: 5 GSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRL 41
G K D+ V + GGG AIR
Sbjct: 56 GLDKFSNIDIR---------VRVTGGGHVSQVYAIRQ 83
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 27.8 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 23 ADVVIVGGGPAGMAAA 38
VVI+GGG G AA
Sbjct: 168 GKVVILGGGVVGTEAA 183
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 27.8 bits (63), Expect = 2.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 23 ADVVIVGGGPAGMAAA 38
A VVI+GGG G AA
Sbjct: 167 ASVVILGGGTVGTNAA 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.2
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 45/129 (34%)
Query: 17 ERFEDVA----DVVIVGGGPAG----------------MAAAIRLKQLAEKDGKELKVCL 56
+ F+ ++ I P + + L EK KE + +
Sbjct: 373 KMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 57 ----------VEKAAEVGGH--ILSG-AVIDPIALNELLPDWKD------LGAPLNTPVH 97
+E + H I+ + ++L+P + D +G L H
Sbjct: 429 PSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 98 EDKFAYLTK 106
++
Sbjct: 487 PERMTLFRM 495
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 25 VVIVGGGPAGMAAAIRLKQ 43
V+I G G AG A+ L+Q
Sbjct: 4 VLIAGAGHAGFQVAVSLRQ 22
Score = 26.0 bits (58), Expect = 7.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 17 ERFEDVADVVIVGGGPAGM--AAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
+R D VV++G G G+ AA R K L+V +VE A V +++ +
Sbjct: 137 QRMPDKKHVVVIGAGFIGLEFAATAR--------AKGLEVDVVELAPRVMARVVTPEI 186
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 27.9 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
D VIVGGG +G A L+EK KV ++E
Sbjct: 28 DYVIVGGGTSGCPLAAT---LSEK----YKVLVLE 55
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 27.6 bits (62), Expect = 2.4
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A + + +P+ GA LN
Sbjct: 112 AVFKKDKPIYAIIYEPM-TERFFEGIPGEGAFLN 144
>1usc_A Putative styrene monooxygenase small component; FMN-binding
protein, structural genomics, riken structural
genomics/proteomics initiative; HET: FMN; 1.24A {Thermus
thermophilus} SCOP: b.45.1.2 PDB: 1usf_A*
Length = 178
Score = 26.9 bits (60), Expect = 2.7
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 98 EDKFAYLTKSKRIGIPILPGMPMN---------NHGNYVVRLGHVVK-WLGEQAEAMGVE 147
DK G+PIL G G++ + +G VV W E
Sbjct: 94 VDKGQAPHFLGHTGVPILEGAYAAYELELLEVHTFGDHDLFVGRVVAVWEEEGLLDEKGR 153
Query: 148 IYPGIPASEVLYHGDG 163
PG+ +LY+G G
Sbjct: 154 PKPGLA---LLYYGKG 166
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 27.5 bits (62), Expect = 2.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRL 41
DV +E D+V++ + AAI+L
Sbjct: 626 DVAVE----SGDIVLIRDDLRDVVAAIQL 650
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 27.5 bits (62), Expect = 3.0
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 29 GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
GG P A +I ++ E++ L E++ ++G ++
Sbjct: 283 GGNPLACAVSIAALEVLEEEK------LTERSLQLGEKLVGQ 318
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 149
Score = 26.8 bits (60), Expect = 3.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 14 VDMERFEDVADVVI--VGGGPAGMAAAIRL 41
RF+D+ D+ I GGG AIR
Sbjct: 61 AGRSRFKDI-DMRIRVRGGGKTSQIYAIRQ 89
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 27.4 bits (60), Expect = 3.3
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG-AVIDP 75
R + +VI+G G L + + E+ + V+ G + G +I
Sbjct: 47 ARRGNATRLVILGTKGFG----AHLMNVRHERPCEV-IAAVDDFRYHSGELYYGLPIIST 101
Query: 76 IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPIL 115
EL +DL A K + + GIP L
Sbjct: 102 DRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHL 141
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.1 bits (61), Expect = 3.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAE 46
VVIVG GP G A +L Q E
Sbjct: 11 VVIVGNGPGGFELAKQLSQTYE 32
Score = 26.4 bits (59), Expect = 6.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 13 DVD--MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
D D E E+ + +I+GGG G+ A L + V L+ +
Sbjct: 132 DADRIKESIENSGEAIIIGGGFIGLELAGNLAEAG------YHVKLIHRG 175
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 27.2 bits (61), Expect = 3.4
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A + + +PI + L G+ LN
Sbjct: 104 AIFHEKDPIYAFIYEPI-VERLYEGIPGKGSYLN 136
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication,
transf; HET: DNA; 2.00A {Aquifex aeolicus}
Length = 407
Score = 27.1 bits (61), Expect = 3.6
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 33 AGMAAAIRLKQLAEKDGKELKVCL 56
AG A L G E+
Sbjct: 299 AGRKAMKSAIPLLLSAGVEVYPVY 322
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 26.8 bits (60), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 16 MERFEDVADVVIVGGGPAGMAAA 38
M + V+IVG G +G A
Sbjct: 1 MAAY----QVLIVGAGFSGAETA 19
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 27.0 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
V +VG G AG AA L G + V L E
Sbjct: 3 RVNVVGAGLAGSEAAW---TLLRL-G--VPVRLFE 31
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding,
endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana}
PDB: 4e2s_A
Length = 266
Score = 26.9 bits (59), Expect = 4.4
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 71 AVIDPIAL-NELLPDWKD-LGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVV 128
A+I P + LPDW + LGA L TP F + +VV
Sbjct: 38 ALITPESHVYSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVV 97
Query: 129 RLGHVVKWLGEQAEAMGVEIYPGIPASE 156
+ ++ + V+ Y +P +
Sbjct: 98 EGAVTLTNTSSSSKKLTVDSYAYLPPNF 125
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 26.7 bits (60), Expect = 4.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRL 41
DV +E AD+V+V P +AA + L
Sbjct: 235 DVAVE----TADIVLVRNDPRDVAAIVEL 259
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 26.7 bits (60), Expect = 4.7
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 5 GSSK-SDQFDVDMERFEDVADVVIVGGGPAGMA----AAIRL---KQLAEKDGKELKVCL 56
G +K D+ V ++ + D +I+GGG +A A+ K L E+D EL
Sbjct: 194 GGAKVKDKIGV-IDNLLEKVDNLIIGGG---LAYTFVKALGHDVGKSLLEEDKIELAKSF 249
Query: 57 VEKAAEVGGHIL 68
+EKA E G
Sbjct: 250 MEKAKEKGVRFY 261
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 26.8 bits (60), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGK 50
++I+G GPAG +AA K K
Sbjct: 12 ILILGAGPAGFSAA---KAALGKCDD 34
Score = 26.4 bits (59), Expect = 6.6
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 8/50 (16%)
Query: 13 DVD--MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
D + ++ I+GGG G+ A + +
Sbjct: 135 DALKIKDECKNKGKAFIIGGGILGIELAQAIIDS------GTPASIGIIL 178
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX,
montreal-kingston bacterial structu genomics
initiative, BSGI; HET: FMN; 2.00A {Escherichia coli}
SCOP: c.34.1.1
Length = 197
Score = 26.3 bits (58), Expect = 5.0
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 26 VIVG-GGPAGMAAAIR-LKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
+IVG G G + L+ L E E + + + A + D AL +
Sbjct: 3 LIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSH 62
Query: 84 DWKDLGAPLN 93
+ D A ++
Sbjct: 63 NPADQAATIS 72
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 26.6 bits (59), Expect = 5.2
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 21/93 (22%)
Query: 24 DVVIVGGGPAGMAAAI-------------------RLKQLAEKDGKELKVCLVEKAAEVG 64
V+I G G GM A R Q+ EK ++ AE
Sbjct: 53 AVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLT--AERT 110
Query: 65 GHILSGAVIDPIALNELLPDWKDLGAPLNTPVH 97
+ P+ + + K+ + + H
Sbjct: 111 EDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPH 143
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 26.7 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRL 41
DV +E A V ++ G G+A A RL
Sbjct: 646 DVAIE----SAGVTLLHGDLRGIAKARRL 670
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 26.7 bits (59), Expect = 5.3
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
M V++ G MA + + + L +VE
Sbjct: 216 QMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVE 259
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 26.4 bits (59), Expect = 5.5
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
G + + +K GA LN
Sbjct: 101 GVFKNNEPYYGLTYEFL-TKSFYEAYKGKGAYLN 133
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 26.7 bits (60), Expect = 5.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRL 41
DV +E D+V++ + AAI+L
Sbjct: 548 DVAVE----SGDIVLIRDDLRDVVAAIQL 572
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 26.6 bits (60), Expect = 5.8
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 19 FEDVADVVIVGGGPAG----MAAA 38
+ D DV+I+GGG AG MAAA
Sbjct: 25 YPDPFDVIIIGGGHAGTEAAMAAA 48
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein
structure initiative; 1.90A {Vibrio cholerae o1 biovar
el tor str} PDB: 2pmb_A
Length = 462
Score = 26.5 bits (58), Expect = 6.0
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 26 VIVGGGPAGMAAAIR 40
+ G GP M ++
Sbjct: 180 ICTGCGPGAMEGPMK 194
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich,
transferase; HET: 2FD; 2.40A {Trichomonas vaginalis}
PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A*
2i4t_A* 2isc_A*
Length = 235
Score = 26.3 bits (58), Expect = 6.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEK 47
+ D A+ V++ G P R K +AE
Sbjct: 8 QVGDFAETVLMCGDPL------RAKLIAET 31
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 26.1 bits (58), Expect = 6.8
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 131 GHVVK-WLG--------EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
G + + LG + A+A +++ G SEVL + G+ GD+ + +G P
Sbjct: 235 GEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP 294
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 8/24 (33%)
Query: 14 VDMERFEDVADVVIVGG---GPAG 34
+D+ER +V+ G GP G
Sbjct: 814 LDLERV-----IVVTGFAEVGPWG 832
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 26.0 bits (58), Expect = 7.4
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 29 GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
P A +R+ + ++DG LV +A +G + G
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDG------LVARANVMGDRLRRG 340
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
polyph protein-ligand complex, transferase; HET: DNA
ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
4edt_A* 4edv_A* 4ee1_A*
Length = 329
Score = 26.1 bits (58), Expect = 7.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 30 GGPAGMAAAIRLKQLAEKDGKELKVCLV 57
G AG A ++ Q + G + V +
Sbjct: 204 GDFAGSEATLKTGQHLLQQGLNVFVIQL 231
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase,
structural medical structural genomics of pathogenic
protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma
brucei}
Length = 349
Score = 26.1 bits (56), Expect = 7.5
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 18 RFEDVADVVIVGGGPAGMAAAIRLKQLAE 46
+ +++AD +I G P R+ ++
Sbjct: 38 KSDELADRIIFVGDPG------RVDVISG 60
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 26.0 bits (58), Expect = 8.0
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 60 AAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN 93
A G + V D +L + GA N
Sbjct: 116 AYFYEGKPMLSYVYDYP-HKKLYKAIRGEGAFCN 148
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 25.9 bits (58), Expect = 9.0
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 5 GSSK-SDQFDVDMERFEDVADVVIVGGGPAGMA----AAIRL---KQLAEKDGKELKVCL 56
G +K SD+ V + + AD +++GG M A+ E+D +L L
Sbjct: 193 GGAKVSDKIGV-ITNLMEKADRILIGGA---MMFTFLKALGKEVGSSRVEEDKIDLAKEL 248
Query: 57 VEKAAEVGGHIL 68
VEKA E G I+
Sbjct: 249 VEKAKEKGVEIV 260
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 26.0 bits (58), Expect = 9.2
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEK-DGKE 51
+ ++ G G + R+ + E+ G
Sbjct: 413 KPSGGKLLPGAGATEIELISRITKYGERTPGLL 445
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 25.7 bits (57), Expect = 9.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 17 ERFEDVADVVIVGGGPAGMAAAI-RLKQLAEKDGKELKVCLVE 58
+R D VI+ GGP+G A + +AE+ G E ++ ++
Sbjct: 270 DRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLD 312
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 26.0 bits (58), Expect = 9.7
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 29 GGGPAGMAAAIR-LKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
G P AA + L+ + D L A G + G
Sbjct: 300 HGNPISAAAGLAVLETIDRDD-------LPAMAERKGRLLRDG 335
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 25.6 bits (56), Expect = 9.7
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 41/158 (25%)
Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
D+VI G + +++ + ++A V S +D
Sbjct: 77 VDIVICAAGRLLIEDQVKIIKAI------------KEAGNVKKFFPSEFGLD-------- 116
Query: 83 PDWKDLGAPLNTPVHEDKFAYLTKSKRIGIP---ILPGMPMNNHGNYVVRLGHVVKWLGE 139
D D P+ V E+K + + G+P + +L
Sbjct: 117 VDRHDAVEPVR-QVFEEKASIRRVIEAEGVPYTYLCCHAFTGY-------------FLRN 162
Query: 140 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK 177
A+ P +V+ GDG+VKG + +
Sbjct: 163 LAQLDAT----DPPRDKVVILGDGNVKGAYVTEADVGT 196
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 25.5 bits (57), Expect = 10.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAIRL 41
DV +E D+V++ + AAI+L
Sbjct: 254 DVAVE----SGDIVLIRDDLRDVVAAIQL 278
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.409
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,099,837
Number of extensions: 200668
Number of successful extensions: 1042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 370
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)