BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2242
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1
Length = 616
Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/318 (51%), Positives = 188/318 (59%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PLVAVGFVVGLDY NPYLSPF+EFQR+K HP++RP EGGKRI
Sbjct: 299 DRHTYGGSFLYHLNEGEPLVAVGFVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRI 358
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
AYGARALNEGGLQ+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAEA ++ L
Sbjct: 359 AYGARALNEGGLQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLT 418
Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WIYK 150
+ T GL YED +K S WI +
Sbjct: 419 SENLQSKTAGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILR 478
Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
+LK ++C P + K L +A SG + T
Sbjct: 479 GMEPWTLKHKGSDSEQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 538
Query: 190 KWNS---------------------VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
K +S VYE+VPLE G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 539 KDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQ 598
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 599 NINWVVPEGGGGPAYNGM 616
>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1
Length = 616
Score = 290 bits (742), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 162/318 (50%), Positives = 190/318 (59%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PLVAVGFVVGLDY NPYLSPF+EFQR+K HP+++P EGGKRI
Sbjct: 299 DRHTYGGSFLYHLNEGEPLVAVGFVVGLDYQNPYLSPFREFQRWKHHPSIQPTLEGGKRI 358
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL- 123
AYGARALNEGGLQ+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAE+ ++ L
Sbjct: 359 AYGARALNEGGLQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGSLAAESIFKQLT 418
Query: 124 AEAGDEVSTGLEPKSYEDKIKSS---------------------------------WIYK 150
+E +TGL YED +K S WI +
Sbjct: 419 SENLQSKTTGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILR 478
Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
+LK ++C P + K L +A SG + T
Sbjct: 479 GMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 538
Query: 190 KWNS---------------------VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
K +S VYE+VPLE G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 539 KDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQ 598
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 599 NINWVVPEGGGGPAYNGM 616
>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1
Length = 617
Score = 287 bits (734), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 159/318 (50%), Positives = 189/318 (59%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PLVA+GFVVGLDY NPYLSPF+EFQR+K HP+++P EGGKRI
Sbjct: 300 DRHTYGGSFLYHLNEGEPLVALGFVVGLDYQNPYLSPFREFQRWKHHPSIQPTLEGGKRI 359
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
AYGARALNEGGLQ IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG+LAAE+ + L
Sbjct: 360 AYGARALNEGGLQCIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLT 419
Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WIYK 150
+ T GL+ YED +K S WI++
Sbjct: 420 NENLQSKTIGLDVTEYEDNLKKSWVWKELYAVRNIRPSCHSILGVYGGMIYTGIFYWIFR 479
Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
+LK ++C P + K L +A SG + T
Sbjct: 480 GMEPWTLKHKGSDSDKLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 539
Query: 190 KWNSV---------------------YEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
K +SV YE+VP+E G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 540 KDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQ 599
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 600 NINWVVPEGGGGPAYNGM 617
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2
Length = 617
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/318 (49%), Positives = 188/318 (59%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PL+A+GFVVGLDY NPYLSPF+EFQR+K HP+++P EGGKRI
Sbjct: 300 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 359
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
AYGARALNEGG Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAE+ + L
Sbjct: 360 AYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLT 419
Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WIYK 150
+ T GL YED +K+S WI++
Sbjct: 420 SENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFR 479
Query: 151 ---------------ELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
+LK ++C P + K L +A SG + T
Sbjct: 480 GMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 539
Query: 190 KWNSV---------------------YEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
K +SV YE+VPLE G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 540 KDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQ 599
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 600 NINWVVPEGGGGPAYNGM 617
>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1
Length = 617
Score = 283 bits (725), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 187/318 (58%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PLVA+G VVGLDY NPYLSPF+EFQR+K HP++RP EGGKRI
Sbjct: 300 DRHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRI 359
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
AYGARALNEGG Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG+LAAE+ + L
Sbjct: 360 AYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLT 419
Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WI-- 148
+ T GL YED +K+S WI
Sbjct: 420 SENLQSKTMGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILR 479
Query: 149 -------------YKELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
++ LK ++C P + K L +A SG + T
Sbjct: 480 GMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 539
Query: 190 KWNS---------------------VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
+ +S VYE+VP+E G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 540 RDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQ 599
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 600 NINWVVPEGGGGPAYNGM 617
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2
Length = 617
Score = 283 bits (725), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 187/318 (58%), Gaps = 76/318 (23%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PLVA+G VVGLDY NPYLSPF+EFQR+K HP++RP EGGKRI
Sbjct: 300 DRHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRI 359
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
AYGARALNEGG Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG+LAAE+ + L
Sbjct: 360 AYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLT 419
Query: 125 EAGDEVST-GLEPKSYEDKIKSS---------------------------------WI-- 148
+ T GL YED +K+S WI
Sbjct: 420 SENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILR 479
Query: 149 -------------YKELKEVRNCRPSFHSK------LGLWGGLAYSGASIMMKGIEPWTF 189
++ LK ++C P + K L +A SG + T
Sbjct: 480 GMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 539
Query: 190 KWNS---------------------VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQ 228
+ +S VYE+VP+E G G RLQINAQNC+HCKTCDIKDP+Q
Sbjct: 540 RDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQ 599
Query: 229 NINWVVPEGGGGPAYNGM 246
NINWVVPEGGGGPAYNGM
Sbjct: 600 NINWVVPEGGGGPAYNGM 617
>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1
SV=2
Length = 597
Score = 240 bits (612), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 112/187 (59%), Positives = 147/187 (78%), Gaps = 3/187 (1%)
Query: 5 DFNTYGGSFLYHL-NEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKR 63
+ + YGGSFLYH+ ++ PLV+VGFVV LDY NP L+P+KEFQ++KTHP++ EGGKR
Sbjct: 280 NVDQYGGSFLYHIEDQGQPLVSVGFVVALDYANPNLNPYKEFQKYKTHPSISKQLEGGKR 339
Query: 64 IAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123
I YGARALNEGG Q+IP+L FPGGCLVGC+AGFLNV K+KGTHNAMKSGM+AAE+ +E +
Sbjct: 340 IGYGARALNEGGFQSIPKLHFPGGCLVGCSAGFLNVAKLKGTHNAMKSGMVAAESIFEDI 399
Query: 124 AEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMK 182
+ G++V T ++P +Y+ I+ +++ KELK RN RPSF++ LG GGL YSG + +
Sbjct: 400 QQKGEDVQT-IDPATYDKNIRDTYVVKELKATRNIRPSFNTSLGYIGGLIYSGIFYVFGR 458
Query: 183 GIEPWTF 189
GIEPWT
Sbjct: 459 GIEPWTL 465
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 194 VYEYVPLE-DGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246
VYE+VP E D S +RLQINAQNCIHCKTCDIKDP QNINWV PEGGGGP Y GM
Sbjct: 544 VYEFVPSEADESKKRLQINAQNCIHCKTCDIKDPQQNINWVTPEGGGGPKYEGM 597
>sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CIR2 PE=1 SV=1
Length = 631
Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 138/201 (68%), Gaps = 17/201 (8%)
Query: 7 NTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAY 66
+ YGG F YH + LV VG VVGLDY NPY+SP+KEFQ+ K HP V EGGK IAY
Sbjct: 301 DVYGGGFQYHFGDG--LVTVGLVVGLDYKNPYVSPYKEFQKMKHHPYYSKVLEGGKCIAY 358
Query: 67 GARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEA---- 122
ARALNEGGLQ++P+L FPGG LVG +AGF+NVPKIKGTH AMKSG+LAAE+ +E+
Sbjct: 359 AARALNEGGLQSVPKLNFPGGVLVGASAGFMNVPKIKGTHTAMKSGLLAAESIFESIKGL 418
Query: 123 --LAEAGDEVS--------TGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGL 172
L E DE + + +SYE K S IYKEL EVRN RPSF KLG +GG+
Sbjct: 419 PVLEEVEDEDAKMAMFDKEATINLESYESAFKESSIYKELYEVRNIRPSFSGKLGGYGGM 478
Query: 173 AYSGA-SIMMKGIEPWTFKWN 192
YSG S+++KG PWT K++
Sbjct: 479 IYSGIDSLILKGKVPWTLKFD 499
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 182 KGIEPWTFKWNSVYEYVPLEDG-SGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGG 240
KG+E F VYE+V E G RLQIN+QNCIHCKTCDIK P Q+I W VPEGG G
Sbjct: 567 KGVES-RFCPAGVYEFVKDEKSPVGTRLQINSQNCIHCKTCDIKAPRQDITWKVPEGGDG 625
Query: 241 PAYN 244
P Y
Sbjct: 626 PKYT 629
>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1
Length = 632
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/185 (55%), Positives = 129/185 (69%), Gaps = 5/185 (2%)
Query: 7 NTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAY 66
+TYGG F+Y + V VG VVGLDY NPY+SP EFQR K +P V +GGK + Y
Sbjct: 322 DTYGGGFMYQFGDN--YVTVGLVVGLDYPNPYVSPALEFQRMKQNPFFAKVLKGGKCLEY 379
Query: 67 GARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA 126
ARALNEGG QAIP+L FPGG L+GC+AGF+NV KIKGTH AMKSG++AA+A +A
Sbjct: 380 AARALNEGGYQAIPKLVFPGGALIGCSAGFVNVAKIKGTHTAMKSGIVAADAIVDAFGR- 438
Query: 127 GDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMKGIE 185
D S L YE+ +K+++++KEL VRN RPSFHS LG +GG+AYS + ++KG
Sbjct: 439 -DAASKPLLLNDYEENLKNTYVFKELYSVRNIRPSFHSFLGNYGGMAYSAVEAYVLKGRV 497
Query: 186 PWTFK 190
PWT K
Sbjct: 498 PWTLK 502
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 194 VYEYVPLEDGS-GERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAY 243
VYEYV E S G+R IN+QNC+HCKTCDIKDP Q I W P+GG GP Y
Sbjct: 579 VYEYVNDEASSYGKRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKY 629
>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3
SV=1
Length = 606
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 147/246 (59%), Gaps = 38/246 (15%)
Query: 2 PIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGG 61
P+ D GGSF+YH + V +G VVGLDY+NPYL+P++EFQ+ K HP V+ + EGG
Sbjct: 284 PLSD-ELLGGSFIYHAENNT--VNLGLVVGLDYSNPYLNPYQEFQKLKLHPMVKDMLEGG 340
Query: 62 KRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121
I YGAR +NEGG Q+IP+L FPGG LVGCTAGF++VPK+KG+H AMK+G+LAAEA +
Sbjct: 341 TCIQYGARTINEGGFQSIPKLVFPGGALVGCTAGFVHVPKVKGSHYAMKTGILAAEAAFP 400
Query: 122 ALAEAGDEVST------GLEP---KSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWG-- 170
L ++ +EP Y +++K SW++KEL+EVRN RPS H WG
Sbjct: 401 QLISQQEKEQEQEQDKPSVEPLLINEYPEELKKSWVWKELREVRNYRPSLH-----WGTI 455
Query: 171 -GLAYSGASI-MMKGIEPWTFKWNSVYEYVPLEDG--SGERLQINAQNCIHCKTCDIKDP 226
GL Y + + +G PWT L +G ERL+ A+ CK + K P
Sbjct: 456 PGLIYGALEMYIFRGHTPWT-----------LSNGKPDNERLKPAAE----CKKIEYKKP 500
Query: 227 TQNINW 232
I +
Sbjct: 501 DGQITF 506
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 194 VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246
VYE+V E G E ++ N+ C+HCKTCDIKDPTQNI++ VPEGGGGP Y M
Sbjct: 555 VYEWVEGEKGEKELVR-NSVFCLHCKTCDIKDPTQNIDFTVPEGGGGPKYGAM 606
>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=PA2953 PE=1 SV=1
Length = 551
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 120/177 (67%), Gaps = 13/177 (7%)
Query: 2 PIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGG 61
P+ D NT GGSFLYHL V VG ++ L Y+NP+LSPF EFQR+K HP V+ EGG
Sbjct: 240 PLNDENT-GGSFLYHLENNQ--VFVGLIIDLSYSNPHLSPFDEFQRYKHHPVVKQYLEGG 296
Query: 62 KRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121
KR+AYGARA+ +GGL ++P++ FPGG L+GC G LN KIKG+H AMKSGMLAA+A E
Sbjct: 297 KRVAYGARAICKGGLNSLPKMVFPGGALIGCDLGTLNFAKIKGSHTAMKSGMLAADAIAE 356
Query: 122 ALA---EAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYS 175
ALA E GDE+S SY D K+SW+Y EL RN + H K G GG A++
Sbjct: 357 ALAAGREGGDELS------SYVDAFKASWLYDELFRSRNFGAAIH-KFGAIGGGAFN 406
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 194 VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246
VYE V +DGS +R QINAQNC+HCKTCDIKDP QNI WV PEG GGP Y M
Sbjct: 500 VYEVVANDDGS-KRFQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM 551
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1
Length = 570
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 16/187 (8%)
Query: 2 PIGDFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGG 61
P+ + + GG +LYH V +G +V L Y NP++ PF E QR+KTHP ++ EGG
Sbjct: 243 PLSETGSSGGWWLYHAENNQ--VTLGMIVDLSYENPHMFPFMEMQRWKTHPLIKQYLEGG 300
Query: 62 KRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121
KRI+YGARA+ +GGL ++P+LTFPGGCL+G AGFLN KIKG+H AMKSGML EA +E
Sbjct: 301 KRISYGARAVVKGGLNSLPKLTFPGGCLIGDDAGFLNFAKIKGSHTAMKSGMLCGEAVFE 360
Query: 122 ALAEAGD-------------EVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGL 168
A+A D E E +Y K SW+ +EL RN P+ H K GL
Sbjct: 361 AIARGVDKGGDLAIARVVEGEDLFDKELTTYTQKFDKSWLKEELHRSRNFGPAMH-KFGL 419
Query: 169 WGGLAYS 175
W G A++
Sbjct: 420 WIGGAFN 426
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 194 VYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246
VYE V +G+ +R QINA NC+HCKTCDIKDP+QNI WV PEGGGGP Y M
Sbjct: 519 VYEIVDEGEGN-KRFQINAANCVHCKTCDIKDPSQNITWVTPEGGGGPNYPNM 570
>sp|P53572|FIXC_AZOVI Protein FixC OS=Azotobacter vinelandii GN=fixC PE=3 SV=1
Length = 427
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D G FLY N+ S + VG ++ D+ +SP++ R KTHP++ P+ G
Sbjct: 214 DAGMMGTGFLY-TNKESITLGVGCMLS-DFKQQKISPYELLDRMKTHPSIAPLIAGSDMK 271
Query: 65 AYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124
Y A + EGG AIP++ + G ++ A + +G++ AM +GMLAA+ E
Sbjct: 272 EYAAHLIPEGGYNAIPQV-YGDGWMIAGDAPIRHGIHREGSNLAMTTGMLAAQTLVE--L 328
Query: 125 EAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163
A D+ + Y+ K+ S++ K+LK+ R FH
Sbjct: 329 RAADKPFSAANLAEYKKKLDDSFVMKDLKKYRRMPEIFH 367
>sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=fixC PE=3 SV=2
Length = 435
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGAR 69
G F+Y N+ + +G +V D+ +P+ +RFK+HP+V P+ EG + Y A
Sbjct: 225 GMGFIY-ANKECISLGIGCLVS-DFQKTGETPYGLLERFKSHPSVAPLIEGSEVKEYAAH 282
Query: 70 ALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDE 129
+ EGG +AIP+L G +VG A N +G++ AM SG +AAEA + +
Sbjct: 283 LIPEGGFKAIPQLFGDGWVVVGDAAQLNNAVHREGSNLAMTSGRIAAEAIF--------Q 334
Query: 130 VSTGLEPKS------YEDKIKSSWIYKELKEVRNCRPSFH 163
V + EP S Y+ ++ S++ K++K+ ++ H
Sbjct: 335 VKSRREPMSAKNLSLYKTMLEESFVLKDMKKYKDLPALLH 374
>sp|P10331|FIXC_BRAJA Protein FixC OS=Bradyrhizobium japonicum (strain USDA 110) GN=fixC
PE=3 SV=2
Length = 435
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGAR 69
G F+Y N+ + +G +V D+ +P+ FK HP+V P+ G + Y A
Sbjct: 225 GMGFIY-ANKECISLGIGCLVA-DFQRTGQTPYGLLDEFKRHPSVAPLIAGSEVKEYSAH 282
Query: 70 ALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDE 129
+ EGG ++IP+L G +VG A N +G++ AM SG +AAEA L ++ E
Sbjct: 283 LIPEGGYKSIPQLYGEGWVVVGDAAQLNNAVHREGSNLAMTSGRIAAEAI--GLVKSRGE 340
Query: 130 VSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164
+ Y+ + S++ K+LK+ ++ P H+
Sbjct: 341 PMSATNLSIYKKMLDDSFVIKDLKKYKDLPPLMHT 375
>sp|Q53208|FIXC_RHISN Protein FixC OS=Rhizobium sp. (strain NGR234) GN=fixC PE=3 SV=1
Length = 435
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGAR 69
G FLY N+ S + +G +V + SP+ FK HP++RP+ G + Y A
Sbjct: 225 GLGFLY-TNKESISLGIGCLVS-HFAATLESPYALLDAFKNHPSIRPLLAGSEIKEYAAH 282
Query: 70 ALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDE 129
+ EGG +AIP+L G +VG A N +G++ AM SG +A EA +
Sbjct: 283 LIPEGGFKAIPQLFGDGWVVVGDAAQLNNAVHREGSNLAMTSGRIAGEAIAAIKSRKHPM 342
Query: 130 VSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164
S L Y+ + S++ K+L++ ++ H+
Sbjct: 343 TSDNLSL--YKAMLDKSFVLKDLRKYKDMPALLHT 375
>sp|P77337|YDIS_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YdiS
OS=Escherichia coli (strain K12) GN=ydiS PE=3 SV=1
Length = 429
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGL-DYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY N+ S +++G V GL D + S + + FK HPA+RP+ GGK + Y A
Sbjct: 222 GGGFLY-TNKDS--ISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF-LNVPKIKGTHNAMKSGMLAAEATYEALAEAG 127
+ EGGL +P+L G +VG AGF LN+ + + AA T A E
Sbjct: 279 HMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERA 338
Query: 128 DEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158
D ++ L Y+ +++ S + ++++ R
Sbjct: 339 DFSASSL--AQYKRELEQSCVMRDMQHFRKI 367
>sp|P09820|FIXC_RHIME Protein FixC OS=Rhizobium meliloti (strain 1021) GN=fixC PE=3 SV=1
Length = 435
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGAR 69
G FLY N+ S + +G ++ ++ P+ FK HP+++P+ G + Y A
Sbjct: 225 GLGFLY-TNKESISLGIGCLIS-NFAETMERPYALLDAFKRHPSIQPLIAGSEVKEYAAH 282
Query: 70 ALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-- 127
+ EGG AIPRL G +VG A N +G++ AM SG +A EA + G
Sbjct: 283 LIPEGGFNAIPRLCGNGWVVVGDAAQLNNAVHREGSNLAMASGRMAGEAISIIKSRGGVM 342
Query: 128 DEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164
D+ S L Y+ + S++ ++L + ++ H+
Sbjct: 343 DKASLSL----YKTMLDKSFVVEDLSKQKDMPSLLHT 375
>sp|Q8Z9K9|FIXC_SALTI Protein FixC OS=Salmonella typhi GN=fixC PE=3 SV=1
Length = 428
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDY-TNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + S + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLYT-NETT--LSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYAA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF-LNVP-KIKGTHNAMKSGMLAAEATYEAL 123
+ E G+ P L G + G AG +N+ I+G A+ +G AA+ A+
Sbjct: 279 HVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSAM 335
>sp|Q8ZRW9|FIXC_SALTY Protein FixC OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=fixC PE=3 SV=1
Length = 428
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDY-TNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + S + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLYT-NETT--LSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYAA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF-LNVP-KIKGTHNAMKSGMLAAEATYEAL 123
+ E G+ P L G + G AG +N+ I+G A+ +G AA+ A+
Sbjct: 279 HVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSAM 335
>sp|Q83SQ7|FIXC_SHIFL Protein FixC OS=Shigella flexneri GN=fixC PE=3 SV=1
Length = 428
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKE-FQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLYT-NENT--LSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF 96
+ E G+ +P L G + G AG
Sbjct: 279 HVVPEAGINMLPELVGDGVLIAGDAAGM 306
>sp|P68644|FIXC_ECOLI Protein FixC OS=Escherichia coli (strain K12) GN=fixC PE=3 SV=1
Length = 428
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKE-FQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLYT-NENT--LSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF 96
+ E G+ +P L G + G AG
Sbjct: 279 HVVPEAGINMLPELVGDGVLIAGDAAGM 306
>sp|P68645|FIXC_ECOL6 Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=fixC PE=3 SV=1
Length = 428
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKE-FQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLYT-NENT--LSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF 96
+ E G+ +P L G + G AG
Sbjct: 279 HVVPEAGINMLPELVGDGVLIAGDAAGM 306
>sp|Q7AHT0|FIXC_ECO57 Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1
Length = 428
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKE-FQRFKTHPAVRPVFEGGKRIAYGA 68
GG FLY NE + +++G V GL + + + + FK HPAV P+ GGK + Y A
Sbjct: 222 GGGFLY-TNENT--LSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSA 278
Query: 69 RALNEGGLQAIPRLTFPGGCLVGCTAGF 96
+ E G+ +P L G + G AG
Sbjct: 279 HVVPEAGINMLPELVGDGVLIAGDAAGM 306
>sp|Q46904|YGCN_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YgcN
OS=Escherichia coli (strain K12) GN=ygcN PE=3 SV=2
Length = 423
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEF-QRFKTHPAVRPVFEGGKRIAYGA 68
GG+FLY N+ + +++G V L P E RFK HPAVRP+ + + + YGA
Sbjct: 216 GGAFLY-TNQQT--LSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGA 272
Query: 69 RALNEGGLQAIP 80
+ EGGL ++P
Sbjct: 273 HLVPEGGLHSMP 284
>sp|P09821|FIXC_RHILE Protein FixC (Fragment) OS=Rhizobium leguminosarum GN=fixC PE=3
SV=1
Length = 163
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 66 YGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125
Y A + EGG +AIP+L G +VG A N +G++ AM SG++A EA ++ +
Sbjct: 7 YAAHLIPEGGFKAIPQLFGNGWVVVGDAAQLNNAVHREGSNLAMTSGLMAGEAIFQIKSR 66
Query: 126 AGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164
G + T Y+ + S++ K+L + ++ H+
Sbjct: 67 GG--LMTKRNLSLYKGMLGKSFVMKDLMKHKDLPSLLHT 103
>sp|Q9XVS7|NXF1_CAEEL Nuclear RNA export factor 1 OS=Caenorhabditis elegans GN=nxf-1 PE=1
SV=1
Length = 628
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 14 LYHLNEPSPLVAVG-FVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI-AYGARAL 71
+ HL+ S LV++ FV+ LD ++ ++S KE ++F P R FEG + ++ RA
Sbjct: 256 IRHLDYASALVSIAKFVMELDLSHNHISTEKELEKFAGLPVERFFFEGNPVVESFTQRAA 315
Query: 72 NEGGL-QAIPRLTFPGGCLV 90
+ Q+ PR G V
Sbjct: 316 YISYIHQSFPRCNMLDGVEV 335
>sp|Q9HKS9|GGR_THEAC Digeranylgeranylglycerophospholipid reductase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta0516 PE=1 SV=2
Length = 396
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYED 141
+T PG LVG A ++ G NA+ SGM AA+ T EA+ E+ D ++ YE
Sbjct: 273 ITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI-ESNDYSPQMMQ--KYEK 329
Query: 142 KIKSSWIYKELKEVRN 157
IK + E K +RN
Sbjct: 330 LIKERF---ERKHLRN 342
>sp|P22494|UMUC_SALTY Protein UmuC OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=umuC PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 82 LTFPGGCLVGCTAGFLNV------PKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLE 135
L+ GC++ C+A + P K +SG++ + YE A+ + V T LE
Sbjct: 30 LSNNDGCVIACSAEAKQLGIAPGEPYFKQKERFRRSGVVCFSSNYELYADMSNRVMTTLE 89
Query: 136 PKSYEDKIKS-SWIYKELKEVRNCR 159
+I S + +L VRNCR
Sbjct: 90 EMVPRVEIYSIDEAFCDLTGVRNCR 114
>sp|P26485|FIXX_AZOC5 Ferredoxin-like protein OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=fixX PE=4 SV=1
Length = 97
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 207 RLQINAQNCIHCKTCD-IKDPTQNINWVVPEGGGG 240
++++ C+ C TC I +P+ +I W P GG G
Sbjct: 57 QVEVTVDGCVECGTCRVIAEPSGDIEWTYPRGGFG 91
>sp|P10326|FIXX_BRAJA Ferredoxin-like protein OS=Bradyrhizobium japonicum (strain USDA
110) GN=fixX PE=4 SV=1
Length = 98
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 207 RLQINAQNCIHCKTCD-IKDPTQNINWVVPEGGGG 240
++++ CI C TC I +PT +I W P GG G
Sbjct: 58 QVEVTVDGCIECGTCRVIAEPTGDIEWSHPRGGYG 92
>sp|Q979Y7|GGR_THEVO Digeranylgeranylglycerophospholipid reductase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV1023 PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPK---S 138
+T PG LVG A ++ G NA+ SGM AA+ + EA+ S P+
Sbjct: 273 ITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVSKEAIE------SNDYSPQMMGK 326
Query: 139 YEDKIKSSWIYKELKEVRN 157
YE +K + E K +RN
Sbjct: 327 YEKLVKDRF---ERKHLRN 342
>sp|E8XWL7|AAEB_RAHSY p-hydroxybenzoic acid efflux pump subunit AaeB OS=Rahnella sp.
(strain Y9602) GN=aaeB PE=3 SV=1
Length = 652
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 101 KIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRP 160
++K H+ S + A TY + + + VS L+ E + +++ LK++R
Sbjct: 235 RLKALHSTSLSMITQACETYLIMQSSPERVSPELKALFAEPAENVADVHRRLKQLRQMIT 294
Query: 161 SFHSKLGLWGGLAYSGAS----IMMKGIE 185
HS L A++GA ++MKGI+
Sbjct: 295 GMHSDNVLMTVSAWTGAGTRALLLMKGIQ 323
>sp|A9KW96|RPOC_SHEB9 DNA-directed RNA polymerase subunit beta' OS=Shewanella baltica
(strain OS195) GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLAKEIEQMREELPSINSE 211
>sp|A6WHS2|RPOC_SHEB8 DNA-directed RNA polymerase subunit beta' OS=Shewanella baltica
(strain OS185) GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLAKEIEQMREELPSINSE 211
>sp|B8EBL1|RPOC_SHEB2 DNA-directed RNA polymerase subunit beta' OS=Shewanella baltica
(strain OS223) GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLAKEIEQMREELPSINSE 211
>sp|A1REA8|RPOC_SHESW DNA-directed RNA polymerase subunit beta' OS=Shewanella sp. (strain
W3-18-1) GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLAKEIEQMREELPSINSE 211
>sp|A4YBY9|RPOC_SHEPC DNA-directed RNA polymerase subunit beta' OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpoC PE=3
SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLAKEIEQMREELPSINSE 211
>sp|Q8EK73|RPOC_SHEON DNA-directed RNA polymerase subunit beta' OS=Shewanella oneidensis
(strain MR-1) GN=rpoC PE=3 SV=1
Length = 1405
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 107 NAMKSGMLAAEATY-EALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSK 165
+++ G + E TY +AL E GDE + ++ + +++ + KE++++R PS +S+
Sbjct: 152 TSLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLRAIDLEKEIEQMREELPSINSE 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,674,419
Number of Sequences: 539616
Number of extensions: 4595037
Number of successful extensions: 10441
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10374
Number of HSP's gapped (non-prelim): 56
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)