Query psy2242
Match_columns 246
No_of_seqs 281 out of 1356
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:48:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415|consensus 100.0 1.6E-79 3.4E-84 566.5 18.2 240 5-246 306-621 (621)
2 PRK10015 oxidoreductase; Provi 100.0 1.2E-36 2.7E-41 288.1 15.4 180 6-191 218-404 (429)
3 PRK10157 putative oxidoreducta 100.0 3.9E-34 8.5E-39 270.8 13.6 179 6-191 218-403 (428)
4 COG0644 FixC Dehydrogenases (f 99.9 3.2E-27 6.8E-32 221.2 17.0 148 5-163 193-341 (396)
5 TIGR02028 ChlP geranylgeranyl 99.8 1.6E-19 3.5E-24 169.5 15.7 139 10-164 207-347 (398)
6 PLN00093 geranylgeranyl diphos 99.8 3E-19 6.4E-24 170.7 14.0 139 10-164 246-386 (450)
7 TIGR02023 BchP-ChlP geranylger 99.7 4.3E-17 9.4E-22 152.0 14.3 134 10-163 203-336 (388)
8 COG2440 FixX Ferredoxin-like p 99.4 5.2E-14 1.1E-18 107.0 2.4 48 193-245 50-98 (99)
9 TIGR02032 GG-red-SF geranylger 99.4 4.3E-12 9.2E-17 111.8 10.7 100 10-119 195-295 (295)
10 PLN02697 lycopene epsilon cycl 99.3 1.8E-11 3.9E-16 119.5 12.2 142 10-162 303-454 (529)
11 PF04820 Trp_halogenase: Trypt 99.2 4.8E-11 1E-15 114.4 9.3 116 9-146 254-370 (454)
12 TIGR01790 carotene-cycl lycope 99.1 3.2E-10 6.9E-15 105.1 11.4 119 13-146 196-318 (388)
13 PRK11445 putative oxidoreducta 99.1 2.4E-10 5.3E-15 105.4 9.4 54 83-145 262-315 (351)
14 PLN02463 lycopene beta cyclase 99.1 1.7E-09 3.7E-14 103.7 14.9 107 13-128 228-337 (447)
15 PRK15449 ferredoxin-like prote 99.1 5E-11 1.1E-15 91.2 1.9 48 193-245 46-94 (95)
16 PRK06185 hypothetical protein; 98.9 1.9E-08 4.2E-13 93.8 11.9 147 10-163 209-358 (407)
17 PRK09126 hypothetical protein; 98.8 3.2E-08 6.9E-13 91.8 9.5 82 79-163 274-356 (392)
18 TIGR01988 Ubi-OHases Ubiquinon 98.7 1.2E-07 2.7E-12 87.0 10.9 82 79-163 270-352 (385)
19 PF01494 FAD_binding_3: FAD bi 98.6 7E-08 1.5E-12 86.6 6.4 63 80-146 286-348 (356)
20 PRK07045 putative monooxygenas 98.6 3.5E-07 7.6E-12 85.0 10.9 81 79-163 279-359 (388)
21 PRK07333 2-octaprenyl-6-methox 98.6 3.7E-07 7.9E-12 84.9 11.0 82 79-163 274-356 (403)
22 PRK05732 2-octaprenyl-6-methox 98.5 7.6E-07 1.7E-11 82.4 11.7 82 80-164 277-359 (395)
23 PRK08243 4-hydroxybenzoate 3-m 98.5 1.8E-06 4E-11 80.6 13.7 78 80-163 274-351 (392)
24 PRK06753 hypothetical protein; 98.5 1.7E-06 3.7E-11 79.7 13.1 142 10-164 195-340 (373)
25 TIGR01984 UbiH 2-polyprenyl-6- 98.5 5.6E-07 1.2E-11 83.1 8.2 80 79-163 270-349 (382)
26 PRK07364 2-octaprenyl-6-methox 98.4 2E-06 4.4E-11 80.3 11.9 82 79-163 288-370 (415)
27 PRK07538 hypothetical protein; 98.3 4.2E-06 9.2E-11 78.7 11.3 71 79-157 291-361 (413)
28 PRK07608 ubiquinone biosynthes 98.3 3.9E-06 8.4E-11 77.6 10.9 82 79-163 274-355 (388)
29 PRK08020 ubiF 2-octaprenyl-3-m 98.3 8.6E-06 1.9E-10 75.6 11.9 84 79-164 275-358 (391)
30 PRK07494 2-octaprenyl-6-methox 98.2 4.7E-06 1E-10 77.3 8.6 79 80-163 275-353 (388)
31 PRK07588 hypothetical protein; 98.2 1.4E-05 3.1E-10 74.3 10.6 78 79-163 273-350 (391)
32 PRK08163 salicylate hydroxylas 98.1 2.5E-05 5.5E-10 72.5 11.0 113 40-163 244-357 (396)
33 PRK08244 hypothetical protein; 98.1 5.4E-05 1.2E-09 72.9 13.6 61 80-144 267-327 (493)
34 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 1.1E-05 2.4E-10 75.6 7.0 79 80-164 274-352 (390)
35 PRK05714 2-octaprenyl-3-methyl 97.9 3.6E-05 7.7E-10 72.0 8.6 82 79-163 279-361 (405)
36 PRK06617 2-octaprenyl-6-methox 97.9 0.00014 3.1E-09 67.5 11.2 74 79-164 267-340 (374)
37 PF08491 SE: Squalene epoxidas 97.8 9.1E-05 2E-09 67.0 8.7 103 10-122 54-167 (276)
38 PRK08773 2-octaprenyl-3-methyl 97.8 7.6E-05 1.7E-09 69.5 8.2 82 79-163 276-358 (392)
39 PRK08013 oxidoreductase; Provi 97.8 0.00012 2.5E-09 68.7 9.4 82 79-163 276-358 (400)
40 COG0654 UbiH 2-polyprenyl-6-me 97.7 0.00046 1E-08 64.5 12.6 92 80-177 273-364 (387)
41 PRK06996 hypothetical protein; 97.7 0.00028 6.1E-09 66.1 10.6 77 79-163 285-361 (398)
42 PRK08850 2-octaprenyl-6-methox 97.7 0.00015 3.2E-09 68.0 8.0 82 80-163 277-358 (405)
43 TIGR01989 COQ6 Ubiquinone bios 97.6 0.00024 5.3E-09 67.5 8.4 83 79-164 327-410 (437)
44 PRK06183 mhpA 3-(3-hydroxyphen 97.5 0.0012 2.7E-08 64.4 12.4 79 80-163 281-359 (538)
45 TIGR03219 salicylate_mono sali 97.5 0.00067 1.4E-08 63.7 10.0 114 41-163 259-374 (414)
46 TIGR01789 lycopene_cycl lycope 97.5 0.00049 1.1E-08 64.4 8.7 107 8-119 175-285 (370)
47 PF05834 Lycopene_cycl: Lycope 97.4 0.00097 2.1E-08 62.3 10.1 106 9-125 182-290 (374)
48 PRK05868 hypothetical protein; 97.4 0.0002 4.4E-09 66.7 4.9 78 79-163 276-353 (372)
49 PF05187 ETF_QO: Electron tran 97.4 8.6E-05 1.9E-09 58.4 1.9 26 167-192 1-27 (110)
50 PRK06847 hypothetical protein; 97.3 0.0007 1.5E-08 62.3 7.5 74 81-162 278-351 (375)
51 PRK08849 2-octaprenyl-3-methyl 97.2 0.0013 2.8E-08 61.2 8.3 78 79-163 273-350 (384)
52 PTZ00367 squalene epoxidase; P 97.2 0.0027 5.8E-08 63.0 10.8 42 81-122 333-374 (567)
53 PRK08132 FAD-dependent oxidore 97.2 0.0051 1.1E-07 60.2 12.4 62 80-145 294-355 (547)
54 PRK06834 hypothetical protein; 96.9 0.012 2.6E-07 57.1 11.9 63 79-145 259-321 (488)
55 PRK06475 salicylate hydroxylas 96.9 0.014 3E-07 54.7 11.6 55 83-145 290-344 (400)
56 PLN02985 squalene monooxygenas 96.7 0.023 5E-07 55.7 12.4 61 83-144 324-384 (514)
57 PRK06184 hypothetical protein; 96.7 0.0038 8.3E-08 60.4 6.8 61 80-145 276-336 (502)
58 PF00037 Fer4: 4Fe-4S binding 96.5 0.001 2.3E-08 38.1 1.0 24 208-231 1-24 (24)
59 PRK07236 hypothetical protein; 96.5 0.0053 1.2E-07 57.1 6.2 76 80-162 300-375 (386)
60 PRK06126 hypothetical protein; 96.5 0.0036 7.8E-08 61.1 5.0 63 79-145 297-359 (545)
61 PF12797 Fer4_2: 4Fe-4S bindin 96.0 0.0022 4.8E-08 36.1 0.5 20 207-226 2-21 (22)
62 PF12837 Fer4_6: 4Fe-4S bindin 95.8 0.0021 4.4E-08 37.0 -0.3 23 208-230 2-24 (24)
63 PRK08294 phenol 2-monooxygenas 95.7 0.3 6.4E-06 49.2 14.3 74 84-163 339-413 (634)
64 PRK12771 putative glutamate sy 95.4 0.027 5.9E-07 55.5 5.8 40 82-126 407-446 (564)
65 PF12800 Fer4_4: 4Fe-4S bindin 95.1 0.013 2.8E-07 30.9 1.3 16 213-228 2-17 (17)
66 PRK08255 salicylyl-CoA 5-hydro 94.5 0.057 1.2E-06 55.4 5.2 77 80-163 260-340 (765)
67 PRK07190 hypothetical protein; 94.4 0.069 1.5E-06 51.9 5.4 62 80-145 269-331 (487)
68 PLN02927 antheraxanthin epoxid 94.4 0.1 2.3E-06 52.8 6.8 66 80-145 362-430 (668)
69 PF13247 Fer4_11: 4Fe-4S diclu 92.3 0.093 2E-06 40.4 2.0 32 206-237 33-64 (98)
70 PF14697 Fer4_21: 4Fe-4S diclu 91.8 0.11 2.3E-06 36.2 1.7 26 206-231 32-58 (59)
71 KOG2614|consensus 91.4 0.41 8.9E-06 45.8 5.7 44 81-124 284-327 (420)
72 COG1146 Ferredoxin [Energy pro 90.9 0.23 5E-06 35.1 2.8 42 193-236 23-64 (68)
73 COG1143 NuoI Formate hydrogenl 89.9 0.12 2.5E-06 43.9 0.6 27 206-232 88-114 (172)
74 PF13237 Fer4_10: 4Fe-4S diclu 89.6 0.17 3.8E-06 33.5 1.2 20 208-227 2-21 (52)
75 COG1142 HycB Fe-S-cluster-cont 88.8 0.22 4.7E-06 42.0 1.4 29 206-234 75-103 (165)
76 PF12838 Fer4_7: 4Fe-4S diclus 88.3 0.19 4.1E-06 33.5 0.6 23 206-228 29-51 (52)
77 PF14697 Fer4_21: 4Fe-4S diclu 88.2 0.26 5.6E-06 34.2 1.2 25 209-233 2-26 (59)
78 TIGR02066 dsrB sulfite reducta 87.8 0.22 4.7E-06 46.6 0.9 33 206-238 207-245 (341)
79 PF13187 Fer4_9: 4Fe-4S diclus 87.2 0.15 3.3E-06 34.1 -0.4 20 211-230 36-55 (55)
80 TIGR02179 PorD_KorD 2-oxoacid: 87.1 0.28 6.1E-06 35.3 1.0 28 206-233 18-45 (78)
81 PRK09626 oorD 2-oxoglutarate-a 86.8 0.35 7.7E-06 37.0 1.4 29 206-234 9-37 (103)
82 PRK08348 NADH-plastoquinone ox 86.6 0.32 7E-06 38.2 1.1 28 207-234 67-94 (120)
83 TIGR00403 ndhI NADH-plastoquin 86.3 0.33 7.1E-06 41.4 1.1 27 207-233 96-122 (183)
84 PRK09625 porD pyruvate flavodo 85.9 0.24 5.3E-06 40.0 0.1 27 206-232 52-78 (133)
85 TIGR02936 fdxN_nitrog ferredox 85.9 0.3 6.4E-06 36.2 0.5 28 206-233 14-41 (91)
86 PRK08348 NADH-plastoquinone ox 85.6 0.39 8.6E-06 37.7 1.1 28 206-233 35-62 (120)
87 CHL00065 psaC photosystem I su 85.5 0.32 6.9E-06 35.5 0.5 29 209-237 42-70 (81)
88 KOG3855|consensus 85.4 0.81 1.7E-05 44.0 3.3 63 79-142 364-426 (481)
89 PRK14028 pyruvate ferredoxin o 84.7 0.52 1.1E-05 43.1 1.7 25 207-231 241-265 (312)
90 PF13237 Fer4_10: 4Fe-4S diclu 84.6 0.34 7.4E-06 32.1 0.3 21 206-226 32-52 (52)
91 TIGR01292 TRX_reduct thioredox 84.5 0.95 2.1E-05 39.7 3.2 36 83-122 264-299 (300)
92 PRK06273 ferredoxin; Provision 84.3 0.37 8E-06 40.5 0.5 28 206-233 42-69 (165)
93 PRK12387 formate hydrogenlyase 84.1 0.79 1.7E-05 38.7 2.4 28 206-233 66-93 (180)
94 PRK08222 hydrogenase 4 subunit 84.1 0.87 1.9E-05 38.7 2.6 28 206-233 66-93 (181)
95 COG1145 NapF Ferredoxin [Energ 83.7 0.42 9.1E-06 35.2 0.5 26 207-232 23-48 (99)
96 TIGR02936 fdxN_nitrog ferredox 83.4 0.37 8E-06 35.6 0.1 26 208-233 65-90 (91)
97 COG2509 Uncharacterized FAD-de 83.1 2.7 5.7E-05 40.9 5.7 74 41-123 406-483 (486)
98 PRK09624 porD pyuvate ferredox 82.8 0.77 1.7E-05 35.5 1.7 27 207-233 75-101 (105)
99 TIGR01971 NuoI NADH-quinone ox 81.9 0.76 1.7E-05 35.9 1.4 28 207-234 76-103 (122)
100 PLN00071 photosystem I subunit 81.5 0.6 1.3E-05 33.9 0.6 30 209-238 42-71 (81)
101 PRK09625 porD pyruvate flavodo 81.5 0.76 1.6E-05 37.1 1.3 28 207-234 83-110 (133)
102 TIGR03048 PS_I_psaC photosyste 81.4 0.54 1.2E-05 34.2 0.3 31 208-238 40-70 (80)
103 PF12798 Fer4_3: 4Fe-4S bindin 81.1 0.43 9.2E-06 24.3 -0.2 14 215-228 1-14 (15)
104 TIGR00403 ndhI NADH-plastoquin 81.1 0.86 1.9E-05 38.8 1.5 25 206-230 55-79 (183)
105 PRK05888 NADH dehydrogenase su 81.0 0.81 1.7E-05 38.0 1.3 27 207-233 91-117 (164)
106 PRK12387 formate hydrogenlyase 80.8 0.89 1.9E-05 38.3 1.5 30 206-235 31-60 (180)
107 PRK05888 NADH dehydrogenase su 80.4 1.1 2.3E-05 37.2 1.9 29 207-235 47-80 (164)
108 COG1144 Pyruvate:ferredoxin ox 80.2 0.93 2E-05 34.4 1.3 28 207-234 29-56 (91)
109 PRK09853 putative selenate red 80.2 2.4 5.2E-05 45.1 4.7 37 82-123 805-841 (1019)
110 COG1453 Predicted oxidoreducta 80.2 0.69 1.5E-05 43.7 0.7 17 211-227 349-365 (391)
111 PRK07233 hypothetical protein; 79.3 2.4 5.3E-05 39.3 4.1 38 84-124 395-432 (434)
112 TIGR02951 DMSO_dmsB DMSO reduc 78.9 1.2 2.6E-05 36.7 1.7 32 206-237 88-119 (161)
113 TIGR01582 FDH-beta formate deh 78.6 1.1 2.3E-05 41.0 1.3 30 206-235 117-146 (283)
114 PRK09623 vorD 2-ketoisovalerat 78.4 1 2.2E-05 34.7 1.1 27 207-233 75-101 (105)
115 PRK06273 ferredoxin; Provision 78.4 1 2.3E-05 37.8 1.2 26 207-232 85-110 (165)
116 TIGR02163 napH_ ferredoxin-typ 77.6 0.95 2.1E-05 40.4 0.8 25 209-233 230-254 (255)
117 PF13187 Fer4_9: 4Fe-4S diclus 77.5 1.1 2.4E-05 29.8 0.8 25 214-238 1-25 (55)
118 TIGR03048 PS_I_psaC photosyste 77.5 1.1 2.3E-05 32.6 0.9 28 207-234 2-29 (80)
119 PRK09754 phenylpropionate diox 77.4 2.3 5E-05 39.8 3.4 38 82-120 265-307 (396)
120 TIGR02064 dsrA sulfite reducta 77.3 1.3 2.8E-05 42.4 1.6 22 206-227 265-286 (402)
121 PLN00071 photosystem I subunit 77.3 1 2.2E-05 32.7 0.7 25 209-233 5-29 (81)
122 CHL00014 ndhI NADH dehydrogena 77.3 0.89 1.9E-05 38.0 0.5 27 207-233 93-119 (167)
123 PF12838 Fer4_7: 4Fe-4S diclus 77.1 0.55 1.2E-05 31.1 -0.7 24 214-237 1-24 (52)
124 CHL00065 psaC photosystem I su 77.0 0.71 1.5E-05 33.6 -0.2 26 209-234 5-30 (81)
125 TIGR00402 napF ferredoxin-type 76.6 1.3 2.8E-05 33.9 1.1 25 207-231 60-84 (101)
126 PRK14993 tetrathionate reducta 76.6 1.1 2.3E-05 40.0 0.8 29 207-235 124-152 (244)
127 PF01593 Amino_oxidase: Flavin 76.5 3.6 7.8E-05 37.1 4.2 33 85-120 418-450 (450)
128 TIGR03169 Nterm_to_SelD pyridi 76.4 3.8 8.3E-05 37.5 4.4 42 83-124 270-311 (364)
129 TIGR02912 sulfite_red_C sulfit 76.1 1.1 2.3E-05 41.2 0.7 26 206-231 194-219 (314)
130 PRK09623 vorD 2-ketoisovalerat 76.0 1.3 2.7E-05 34.2 0.9 28 206-233 44-71 (105)
131 KOG3256|consensus 75.9 0.71 1.5E-05 39.0 -0.5 33 206-238 104-138 (212)
132 PRK09626 oorD 2-oxoglutarate-a 75.8 1.5 3.2E-05 33.6 1.3 27 208-234 48-74 (103)
133 TIGR03287 methan_mark_16 putat 75.5 1.1 2.3E-05 42.8 0.5 27 209-235 326-352 (391)
134 TIGR01971 NuoI NADH-quinone ox 75.5 1.3 2.8E-05 34.5 0.9 28 207-234 32-64 (122)
135 TIGR01944 rnfB electron transp 75.5 1.3 2.9E-05 36.9 1.0 26 208-233 138-163 (165)
136 PRK08222 hydrogenase 4 subunit 75.3 1 2.3E-05 38.2 0.4 27 206-232 31-57 (181)
137 TIGR03478 DMSO_red_II_bet DMSO 74.7 1.3 2.8E-05 41.1 0.8 30 207-236 156-185 (321)
138 COG1145 NapF Ferredoxin [Energ 74.0 1.8 3.8E-05 31.8 1.3 31 206-236 56-86 (99)
139 PRK07118 ferredoxin; Validated 73.3 2.3 5E-05 38.6 2.1 32 207-238 236-267 (280)
140 PRK09898 hypothetical protein; 73.0 2.5 5.3E-05 36.5 2.1 27 207-233 148-174 (208)
141 TIGR02179 PorD_KorD 2-oxoacid: 72.9 2.1 4.5E-05 30.6 1.4 27 207-233 49-75 (78)
142 TIGR03149 cyt_nit_nrfC cytochr 72.3 2.1 4.6E-05 37.5 1.5 28 207-234 119-146 (225)
143 PRK09477 napH quinol dehydroge 72.1 1.7 3.7E-05 39.1 1.0 26 206-231 200-226 (271)
144 CHL00014 ndhI NADH dehydrogena 71.8 2 4.3E-05 35.9 1.2 25 206-230 52-76 (167)
145 TIGR02494 PFLE_PFLC glycyl-rad 71.5 2.1 4.6E-05 38.4 1.4 26 206-231 41-66 (295)
146 PRK14028 pyruvate ferredoxin o 71.2 1.6 3.5E-05 39.9 0.6 26 208-233 284-309 (312)
147 COG4656 RnfC Predicted NADH:ub 71.1 1.4 3E-05 43.4 0.1 17 211-227 402-418 (529)
148 PRK13409 putative ATPase RIL; 71.0 2.3 5.1E-05 42.5 1.7 27 206-232 42-68 (590)
149 PRK12779 putative bifunctional 70.7 4.9 0.00011 42.6 4.1 58 82-153 590-647 (944)
150 PRK13984 putative oxidoreducta 70.5 5.2 0.00011 39.8 4.0 37 82-124 566-602 (604)
151 PRK12770 putative glutamate sy 70.5 6.8 0.00015 36.0 4.6 37 83-124 314-350 (352)
152 TIGR02494 PFLE_PFLC glycyl-rad 70.1 1.4 3E-05 39.6 -0.1 28 206-233 75-102 (295)
153 PTZ00318 NADH dehydrogenase-li 70.0 7.4 0.00016 36.9 4.8 42 83-124 307-348 (424)
154 PRK02651 photosystem I subunit 70.0 2 4.3E-05 31.0 0.7 23 211-233 44-66 (81)
155 PRK12810 gltD glutamate syntha 69.9 6.4 0.00014 37.9 4.4 38 82-124 428-465 (471)
156 TIGR02060 aprB adenosine phosp 69.3 1.8 4E-05 35.0 0.5 28 207-234 39-66 (132)
157 TIGR01317 GOGAT_sm_gam glutama 69.3 6.9 0.00015 38.0 4.5 40 81-125 441-480 (485)
158 PRK11749 dihydropyrimidine deh 69.1 7 0.00015 37.4 4.5 37 83-124 416-452 (457)
159 PRK10330 formate dehydrogenase 68.8 2.9 6.2E-05 35.1 1.6 27 207-233 81-107 (181)
160 PRK12769 putative oxidoreducta 68.8 3.2 6.9E-05 41.8 2.1 29 206-234 78-106 (654)
161 PRK09564 coenzyme A disulfide 68.6 4.2 9.1E-05 38.4 2.8 39 82-120 272-315 (444)
162 COG1150 HdrC Heterodisulfide r 68.6 2.1 4.6E-05 37.0 0.7 19 212-230 38-56 (195)
163 TIGR02732 zeta_caro_desat caro 68.5 26 0.00055 33.9 8.3 36 81-119 438-473 (474)
164 PRK08274 tricarballylate dehyd 68.3 12 0.00025 35.8 5.8 42 83-124 417-462 (466)
165 TIGR02163 napH_ ferredoxin-typ 68.3 4.4 9.4E-05 36.1 2.7 28 206-233 193-221 (255)
166 PRK02651 photosystem I subunit 68.2 2.2 4.8E-05 30.8 0.7 22 210-231 6-27 (81)
167 TIGR02512 Fe_only_hydrog hydro 67.8 1.8 3.9E-05 40.7 0.2 26 208-233 45-70 (374)
168 COG0437 HybA Fe-S-cluster-cont 67.8 3.1 6.8E-05 36.2 1.6 30 207-236 94-123 (203)
169 PRK12831 putative oxidoreducta 67.4 7.7 0.00017 37.4 4.4 38 82-124 424-461 (464)
170 PRK14993 tetrathionate reducta 67.3 1.5 3.3E-05 39.0 -0.4 24 207-230 45-68 (244)
171 PF13534 Fer4_17: 4Fe-4S diclu 67.1 1.4 3.1E-05 29.9 -0.5 19 210-228 41-59 (61)
172 PLN02487 zeta-carotene desatur 67.0 25 0.00053 35.2 7.9 40 81-123 514-553 (569)
173 PRK05113 electron transport co 66.9 2.4 5.1E-05 36.4 0.7 27 208-234 139-165 (191)
174 PRK06175 L-aspartate oxidase; 66.2 18 0.00039 34.6 6.6 44 81-124 341-388 (433)
175 PRK10262 thioredoxin reductase 65.8 5.1 0.00011 36.1 2.7 39 81-124 276-315 (321)
176 TIGR02700 flavo_MJ0208 archaeo 65.7 2.6 5.6E-05 37.1 0.7 26 207-232 142-167 (234)
177 PRK08764 ferredoxin; Provision 65.7 3.3 7.1E-05 33.4 1.2 26 208-233 110-135 (135)
178 PRK09477 napH quinol dehydroge 65.4 2.6 5.6E-05 37.9 0.7 25 209-233 238-262 (271)
179 PRK15033 tricarballylate utili 64.9 2.5 5.4E-05 40.2 0.5 21 207-227 61-81 (389)
180 TIGR01316 gltA glutamate synth 64.8 7.4 0.00016 37.3 3.7 36 82-122 413-448 (449)
181 PLN02976 amine oxidase 64.8 11 0.00025 41.9 5.4 43 82-127 1148-1190(1713)
182 COG1245 Predicted ATPase, RNas 64.2 4.3 9.4E-05 39.8 1.9 26 207-232 44-69 (591)
183 TIGR03294 FrhG coenzyme F420 h 64.0 2.4 5.2E-05 37.3 0.2 27 207-233 168-194 (228)
184 PRK09624 porD pyuvate ferredox 63.9 2.5 5.5E-05 32.6 0.3 26 208-233 46-71 (105)
185 PRK08318 dihydropyrimidine deh 63.6 3.7 8E-05 39.1 1.4 30 207-236 371-401 (420)
186 PLN02268 probable polyamine ox 63.6 8.6 0.00019 36.2 3.9 36 85-123 399-434 (435)
187 PRK06481 fumarate reductase fl 63.5 15 0.00032 35.8 5.6 42 83-124 460-504 (506)
188 PF13484 Fer4_16: 4Fe-4S doubl 63.3 1.6 3.4E-05 30.3 -0.9 20 214-233 1-20 (67)
189 PRK12775 putative trifunctiona 63.1 11 0.00024 40.2 4.9 41 82-127 718-758 (1006)
190 PRK10194 ferredoxin-type prote 63.0 4 8.6E-05 33.7 1.3 28 207-234 132-159 (163)
191 PRK08318 dihydropyrimidine deh 62.7 3.8 8.2E-05 39.0 1.3 28 206-233 335-365 (420)
192 PRK12416 protoporphyrinogen ox 62.7 11 0.00023 35.9 4.3 34 85-124 429-462 (463)
193 PLN02612 phytoene desaturase 62.7 9.2 0.0002 38.0 4.0 38 84-124 512-549 (567)
194 TIGR02176 pyruv_ox_red pyruvat 62.5 3 6.4E-05 45.2 0.6 26 207-232 677-702 (1165)
195 TIGR02176 pyruv_ox_red pyruvat 62.5 4.1 8.9E-05 44.1 1.6 27 207-233 733-761 (1165)
196 PRK06263 sdhA succinate dehydr 62.5 11 0.00024 37.1 4.5 44 81-124 358-404 (543)
197 KOG1298|consensus 62.3 7 0.00015 37.7 2.9 37 81-117 322-358 (509)
198 TIGR03224 benzo_boxA benzoyl-C 62.3 3.6 7.9E-05 39.2 1.1 36 207-243 33-68 (411)
199 PRK06991 ferredoxin; Provision 62.1 3.1 6.7E-05 37.7 0.5 26 207-232 79-104 (270)
200 PRK12814 putative NADPH-depend 61.8 11 0.00024 38.1 4.4 40 82-126 464-503 (652)
201 TIGR01660 narH nitrate reducta 61.6 4.1 8.9E-05 39.7 1.3 30 207-236 208-237 (492)
202 PRK15055 anaerobic sulfite red 61.4 3.8 8.2E-05 38.4 1.0 24 211-234 224-250 (344)
203 KOG1346|consensus 61.4 1.8 3.8E-05 42.0 -1.2 40 83-122 476-519 (659)
204 TIGR00397 mauM_napG MauM/NapG 60.9 6.3 0.00014 34.3 2.2 30 206-235 124-160 (213)
205 TIGR03287 methan_mark_16 putat 60.8 5 0.00011 38.3 1.7 26 206-231 295-322 (391)
206 COG1146 Ferredoxin [Energy pro 60.4 4.8 0.0001 28.2 1.2 30 207-236 2-31 (68)
207 PRK10882 hydrogenase 2 protein 60.4 2.8 6E-05 39.1 -0.1 27 207-233 137-163 (328)
208 TIGR01582 FDH-beta formate deh 60.2 14 0.0003 33.7 4.4 31 206-237 84-117 (283)
209 COG2221 DsrA Dissimilatory sul 59.6 4 8.7E-05 37.8 0.8 22 205-226 193-214 (317)
210 PRK12778 putative bifunctional 59.5 11 0.00024 38.6 4.1 38 82-124 713-750 (752)
211 TIGR02730 carot_isom carotene 59.3 12 0.00025 36.2 4.0 35 82-121 456-490 (493)
212 PRK00783 DNA-directed RNA poly 59.1 5.3 0.00012 35.6 1.5 26 209-234 195-220 (263)
213 TIGR00562 proto_IX_ox protopor 59.1 13 0.00028 35.2 4.2 34 84-123 427-460 (462)
214 PRK10194 ferredoxin-type prote 59.0 5.1 0.00011 33.1 1.3 25 210-234 96-125 (163)
215 TIGR03294 FrhG coenzyme F420 h 58.9 4.9 0.00011 35.4 1.2 25 207-231 197-221 (228)
216 TIGR03478 DMSO_red_II_bet DMSO 58.8 7 0.00015 36.3 2.2 26 206-231 122-149 (321)
217 PRK11883 protoporphyrinogen ox 58.7 13 0.00027 34.9 4.0 32 84-121 419-450 (451)
218 TIGR01944 rnfB electron transp 58.6 5.2 0.00011 33.3 1.3 28 206-233 106-133 (165)
219 TIGR02734 crtI_fam phytoene de 58.4 13 0.00029 35.7 4.2 40 83-127 457-496 (502)
220 TIGR02700 flavo_MJ0208 archaeo 58.0 5.1 0.00011 35.2 1.2 26 207-232 171-196 (234)
221 KOG3256|consensus 57.4 6.6 0.00014 33.3 1.6 38 194-231 129-168 (212)
222 PRK15317 alkyl hydroperoxide r 57.0 12 0.00026 36.5 3.7 41 82-126 474-514 (517)
223 PF13183 Fer4_8: 4Fe-4S diclus 56.9 1.7 3.7E-05 29.0 -1.6 15 212-226 2-16 (57)
224 COG1252 Ndh NADH dehydrogenase 56.6 14 0.0003 35.5 4.0 41 82-125 289-333 (405)
225 TIGR00273 iron-sulfur cluster- 56.5 4.2 9.1E-05 39.3 0.4 20 210-229 290-309 (432)
226 TIGR01372 soxA sarcosine oxida 56.5 14 0.0003 39.3 4.3 35 84-124 438-472 (985)
227 cd07030 RNAP_D D subunit of Ar 56.0 7.2 0.00016 34.7 1.8 31 207-237 193-223 (259)
228 COG1149 MinD superfamily P-loo 55.8 5.4 0.00012 36.3 1.0 31 206-236 92-122 (284)
229 PRK00783 DNA-directed RNA poly 55.6 4.5 9.8E-05 36.1 0.4 27 206-233 163-189 (263)
230 TIGR03385 CoA_CoA_reduc CoA-di 55.6 12 0.00025 35.3 3.2 39 82-120 259-302 (427)
231 PRK13795 hypothetical protein; 55.5 4.8 0.0001 40.7 0.7 27 207-233 575-601 (636)
232 PRK05113 electron transport co 55.5 5.7 0.00012 34.0 1.0 27 206-232 107-133 (191)
233 PRK12809 putative oxidoreducta 55.4 16 0.00035 36.7 4.4 38 82-124 598-635 (639)
234 PRK13795 hypothetical protein; 55.1 4.9 0.00011 40.6 0.7 25 207-231 606-630 (636)
235 PRK07569 bidirectional hydroge 55.1 6.4 0.00014 34.6 1.3 29 206-234 139-169 (234)
236 TIGR01812 sdhA_frdA_Gneg succi 55.0 16 0.00034 36.1 4.2 43 82-124 357-403 (566)
237 PRK07803 sdhA succinate dehydr 54.9 16 0.00036 36.7 4.3 43 82-124 403-448 (626)
238 COG1149 MinD superfamily P-loo 54.4 7 0.00015 35.7 1.4 31 207-238 63-93 (284)
239 PRK12769 putative oxidoreducta 54.3 17 0.00038 36.6 4.4 38 82-124 615-652 (654)
240 TIGR01318 gltD_gamma_fam gluta 54.3 19 0.00041 34.7 4.5 36 83-123 430-465 (467)
241 PRK09476 napG quinol dehydroge 54.2 7.2 0.00016 34.9 1.5 36 208-244 179-220 (254)
242 PRK07570 succinate dehydrogena 54.2 5.7 0.00012 35.5 0.8 23 207-229 151-173 (250)
243 TIGR03143 AhpF_homolog putativ 54.1 16 0.00034 36.1 4.0 40 82-125 271-310 (555)
244 TIGR00397 mauM_napG MauM/NapG 53.9 6.9 0.00015 34.0 1.3 23 207-229 169-191 (213)
245 TIGR00402 napF ferredoxin-type 53.9 4.8 0.0001 30.7 0.3 26 208-233 29-54 (101)
246 PRK05675 sdhA succinate dehydr 53.5 19 0.00041 35.8 4.5 42 83-124 361-406 (570)
247 TIGR03140 AhpF alkyl hydropero 52.9 9.5 0.00021 37.2 2.2 38 83-124 476-513 (515)
248 PRK06991 ferredoxin; Provision 52.8 6.5 0.00014 35.6 1.0 28 207-234 109-136 (270)
249 PRK05945 sdhA succinate dehydr 52.5 19 0.00042 35.7 4.4 42 83-124 369-414 (575)
250 PRK09231 fumarate reductase fl 52.4 18 0.00038 36.1 4.1 44 81-124 368-415 (582)
251 TIGR02484 CitB CitB domain pro 51.7 6.3 0.00014 37.4 0.8 17 211-227 46-62 (372)
252 PRK05249 soluble pyridine nucl 51.4 17 0.00036 34.6 3.6 34 82-120 300-333 (461)
253 PRK12843 putative FAD-binding 50.9 19 0.00042 35.7 4.1 42 83-124 528-573 (578)
254 PRK09476 napG quinol dehydroge 50.7 7.5 0.00016 34.8 1.0 29 206-234 130-165 (254)
255 TIGR02910 sulfite_red_A sulfit 50.7 6.4 0.00014 36.8 0.6 16 212-227 219-234 (334)
256 PRK08640 sdhB succinate dehydr 50.6 6.6 0.00014 35.1 0.7 21 209-229 148-168 (249)
257 cd07030 RNAP_D D subunit of Ar 49.9 7.8 0.00017 34.5 1.0 32 193-232 157-188 (259)
258 PRK06069 sdhA succinate dehydr 49.7 20 0.00044 35.5 4.0 41 84-124 371-415 (577)
259 PRK06134 putative FAD-binding 49.6 15 0.00032 36.5 3.1 41 83-123 527-571 (581)
260 PRK07569 bidirectional hydroge 49.5 5.9 0.00013 34.7 0.2 24 210-233 187-210 (234)
261 COG1941 FrhG Coenzyme F420-red 49.4 27 0.00059 31.2 4.3 67 170-237 140-214 (247)
262 PRK08958 sdhA succinate dehydr 49.3 21 0.00046 35.6 4.1 42 83-124 379-424 (588)
263 PRK06116 glutathione reductase 48.7 23 0.0005 33.6 4.1 34 82-120 293-326 (450)
264 TIGR02912 sulfite_red_C sulfit 48.7 6.7 0.00014 35.9 0.4 26 207-232 163-191 (314)
265 PRK12576 succinate dehydrogena 48.5 8.4 0.00018 35.0 1.0 21 210-230 149-169 (279)
266 PLN02676 polyamine oxidase 48.0 22 0.00049 34.5 4.0 40 85-127 438-477 (487)
267 PRK12386 fumarate reductase ir 48.0 9.3 0.0002 34.2 1.2 17 211-227 198-214 (251)
268 TIGR02910 sulfite_red_A sulfit 48.0 6.9 0.00015 36.6 0.4 20 209-228 297-316 (334)
269 PLN00129 succinate dehydrogena 47.4 8.2 0.00018 35.1 0.8 21 210-230 184-204 (276)
270 TIGR00384 dhsB succinate dehyd 47.2 7.7 0.00017 33.7 0.6 20 211-230 136-155 (220)
271 PRK09078 sdhA succinate dehydr 47.0 25 0.00053 35.2 4.1 42 83-124 384-429 (598)
272 PRK13984 putative oxidoreducta 47.0 8.3 0.00018 38.3 0.8 27 207-233 80-106 (604)
273 PRK14694 putative mercuric red 46.8 22 0.00048 34.1 3.7 35 81-120 299-333 (468)
274 TIGR00384 dhsB succinate dehyd 46.6 9.4 0.0002 33.1 1.0 18 211-228 192-209 (220)
275 PRK07118 ferredoxin; Validated 46.5 8.4 0.00018 35.0 0.7 27 207-233 162-188 (280)
276 PRK07121 hypothetical protein; 46.2 25 0.00054 33.9 4.0 38 84-121 449-489 (492)
277 PF01976 DUF116: Protein of un 46.2 6.4 0.00014 32.8 -0.1 21 206-226 58-78 (158)
278 TIGR02733 desat_CrtD C-3',4' d 46.1 25 0.00054 33.8 3.9 35 82-121 456-490 (492)
279 PRK12575 succinate dehydrogena 46.0 7.8 0.00017 34.3 0.4 21 210-230 141-161 (235)
280 PLN02529 lysine-specific histo 46.0 20 0.00043 37.1 3.4 39 84-125 562-600 (738)
281 PRK12842 putative succinate de 45.9 26 0.00055 34.8 4.1 42 83-124 523-568 (574)
282 PRK08626 fumarate reductase fl 45.8 28 0.0006 35.4 4.3 42 83-124 385-430 (657)
283 TIGR03290 CoB_CoM_SS_C CoB--Co 45.8 9.4 0.0002 30.8 0.8 17 213-229 46-62 (144)
284 PRK05035 electron transport co 45.7 8.8 0.00019 39.4 0.8 18 211-228 407-424 (695)
285 PRK10882 hydrogenase 2 protein 45.6 7.9 0.00017 36.1 0.4 25 206-230 38-62 (328)
286 PLN02576 protoporphyrinogen ox 45.5 33 0.00071 32.8 4.7 34 85-124 455-488 (496)
287 TIGR01816 sdhA_forward succina 45.4 22 0.00048 35.2 3.5 42 83-124 352-397 (565)
288 TIGR03336 IOR_alpha indolepyru 45.2 8.1 0.00018 38.6 0.4 22 206-227 543-566 (595)
289 PRK14727 putative mercuric red 45.1 24 0.00052 34.0 3.6 34 82-120 311-344 (479)
290 PRK04965 NADH:flavorubredoxin 45.0 22 0.00048 32.8 3.3 38 82-120 263-300 (377)
291 PLN03000 amine oxidase 44.8 30 0.00065 36.5 4.5 66 85-153 588-657 (881)
292 PRK12386 fumarate reductase ir 44.8 11 0.00024 33.7 1.2 23 208-230 137-159 (251)
293 PRK12385 fumarate reductase ir 44.4 10 0.00022 33.7 0.9 16 213-228 203-218 (244)
294 PRK12835 3-ketosteroid-delta-1 44.3 34 0.00074 34.1 4.7 45 83-127 526-574 (584)
295 PRK05950 sdhB succinate dehydr 43.7 11 0.00024 33.0 1.0 17 212-228 197-213 (232)
296 COG1139 Uncharacterized conser 43.4 7.3 0.00016 37.7 -0.2 14 214-227 309-322 (459)
297 PRK09898 hypothetical protein; 43.2 18 0.00039 31.1 2.3 28 207-234 115-144 (208)
298 TIGR01945 rnfC electron transp 43.1 11 0.00024 36.3 1.0 17 210-226 360-376 (435)
299 PRK12577 succinate dehydrogena 43.0 11 0.00024 34.9 0.9 20 211-230 150-169 (329)
300 PRK08205 sdhA succinate dehydr 42.9 32 0.00069 34.2 4.2 42 83-124 374-419 (583)
301 PRK05035 electron transport co 42.9 8.4 0.00018 39.5 0.1 21 210-230 367-387 (695)
302 TIGR02745 ccoG_rdxA_fixG cytoc 42.9 9.7 0.00021 36.8 0.5 19 212-231 230-248 (434)
303 PRK09326 F420H2 dehydrogenase 42.7 11 0.00024 35.0 0.8 21 210-230 50-70 (341)
304 PRK12834 putative FAD-binding 42.4 25 0.00055 34.6 3.4 38 84-121 504-548 (549)
305 PRK08641 sdhA succinate dehydr 42.3 37 0.00079 33.9 4.5 44 81-124 365-411 (589)
306 PRK07057 sdhA succinate dehydr 42.2 31 0.00068 34.4 4.1 41 83-123 382-426 (591)
307 TIGR03467 HpnE squalene-associ 42.1 26 0.00057 32.1 3.3 34 84-120 385-418 (419)
308 TIGR03149 cyt_nit_nrfC cytochr 41.8 19 0.00041 31.5 2.1 28 206-233 85-114 (225)
309 PRK12385 fumarate reductase ir 41.7 10 0.00023 33.6 0.5 21 210-230 144-164 (244)
310 PLN02507 glutathione reductase 41.3 31 0.00067 33.6 3.8 35 81-120 327-361 (499)
311 PRK07818 dihydrolipoamide dehy 41.3 30 0.00066 33.1 3.7 34 82-120 301-334 (466)
312 TIGR01176 fum_red_Fp fumarate 41.1 34 0.00074 34.1 4.1 44 81-124 367-414 (580)
313 PRK12809 putative oxidoreducta 41.0 11 0.00023 38.0 0.5 27 207-233 79-105 (639)
314 TIGR00551 nadB L-aspartate oxi 41.0 32 0.00069 33.3 3.8 43 81-123 343-389 (488)
315 COG1144 Pyruvate:ferredoxin ox 40.9 12 0.00027 28.4 0.8 24 210-233 63-86 (91)
316 PRK13748 putative mercuric red 40.9 30 0.00065 33.8 3.6 34 82-120 393-426 (561)
317 TIGR01350 lipoamide_DH dihydro 40.9 32 0.0007 32.6 3.8 33 83-120 298-330 (461)
318 PRK12839 hypothetical protein; 40.8 32 0.00068 34.3 3.8 39 83-121 524-566 (572)
319 PRK06452 sdhA succinate dehydr 40.7 38 0.00081 33.6 4.3 41 84-124 360-404 (566)
320 PRK08401 L-aspartate oxidase; 40.3 31 0.00068 33.2 3.6 42 81-122 320-365 (466)
321 PTZ00306 NADH-dependent fumara 40.1 37 0.00079 36.9 4.4 46 83-128 859-907 (1167)
322 PRK06416 dihydrolipoamide dehy 40.1 31 0.00067 32.8 3.5 35 82-121 299-333 (462)
323 TIGR01421 gluta_reduc_1 glutat 40.0 38 0.00082 32.4 4.1 33 83-120 294-326 (450)
324 COG1143 NuoI Formate hydrogenl 40.0 12 0.00027 31.6 0.7 28 207-234 49-76 (172)
325 TIGR01660 narH nitrate reducta 40.0 23 0.0005 34.7 2.6 28 206-233 174-203 (492)
326 TIGR02485 CobZ_N-term precorri 39.7 36 0.00078 32.2 3.9 38 85-122 388-429 (432)
327 PRK07512 L-aspartate oxidase; 39.5 34 0.00074 33.5 3.8 44 81-124 351-398 (513)
328 PLN02328 lysine-specific histo 39.0 43 0.00094 35.1 4.6 39 85-126 644-682 (808)
329 PRK04176 ribulose-1,5-biphosph 39.0 44 0.00096 29.6 4.1 44 81-124 210-255 (257)
330 PRK12577 succinate dehydrogena 39.0 13 0.00027 34.6 0.6 17 212-228 208-224 (329)
331 TIGR00314 cdhA CO dehydrogenas 38.3 11 0.00024 39.1 0.2 22 207-228 393-414 (784)
332 TIGR01945 rnfC electron transp 38.0 13 0.00028 35.8 0.6 15 214-228 403-417 (435)
333 PRK00941 acetyl-CoA decarbonyl 37.9 9 0.00019 39.7 -0.5 23 206-228 397-419 (781)
334 PRK09077 L-aspartate oxidase; 37.7 38 0.00083 33.3 3.8 43 81-123 363-409 (536)
335 cd01916 ACS_1 Acetyl-CoA synth 37.7 10 0.00022 39.1 -0.2 23 206-228 358-380 (731)
336 PRK06292 dihydrolipoamide dehy 37.6 37 0.0008 32.2 3.6 35 82-121 296-330 (460)
337 PRK06259 succinate dehydrogena 37.3 15 0.00033 35.6 0.9 21 210-230 130-150 (486)
338 PF13746 Fer4_18: 4Fe-4S diclu 37.1 15 0.00032 26.1 0.6 19 210-228 47-65 (69)
339 PRK08764 ferredoxin; Provision 37.0 14 0.0003 29.7 0.5 23 210-232 82-104 (135)
340 PLN00128 Succinate dehydrogena 36.3 69 0.0015 32.4 5.4 42 83-124 422-467 (635)
341 PRK13552 frdB fumarate reducta 36.2 12 0.00027 33.1 0.1 20 209-228 145-164 (239)
342 TIGR00276 iron-sulfur cluster 36.1 11 0.00024 34.2 -0.2 20 212-231 158-177 (282)
343 TIGR01438 TGR thioredoxin and 36.0 46 0.001 32.3 4.1 35 82-120 308-342 (484)
344 PRK12844 3-ketosteroid-delta-1 35.9 37 0.0008 33.6 3.4 42 83-124 506-551 (557)
345 TIGR03315 Se_ygfK putative sel 35.9 42 0.0009 36.1 3.9 34 83-121 804-837 (1012)
346 PTZ00139 Succinate dehydrogena 35.9 41 0.0009 33.8 3.8 42 83-124 401-446 (617)
347 PRK06327 dihydrolipoamide dehy 35.6 41 0.00088 32.4 3.6 34 82-120 312-345 (475)
348 TIGR02352 thiamin_ThiO glycine 35.3 1.3E+02 0.0027 26.6 6.5 38 83-120 292-334 (337)
349 PRK08640 sdhB succinate dehydr 35.3 18 0.00039 32.3 1.0 18 211-228 207-224 (249)
350 PRK08071 L-aspartate oxidase; 35.1 42 0.00092 32.8 3.7 43 81-123 342-388 (510)
351 PRK05950 sdhB succinate dehydr 35.0 14 0.00031 32.3 0.3 20 210-229 138-157 (232)
352 PRK06467 dihydrolipoamide dehy 34.9 41 0.00088 32.4 3.5 34 82-120 302-335 (471)
353 TIGR01813 flavo_cyto_c flavocy 34.2 41 0.00089 31.7 3.3 35 83-117 402-439 (439)
354 PF13484 Fer4_16: 4Fe-4S doubl 34.2 15 0.00032 25.3 0.2 23 206-228 39-67 (67)
355 PRK15055 anaerobic sulfite red 33.6 18 0.0004 33.9 0.8 17 211-227 305-321 (344)
356 PLN02568 polyamine oxidase 33.6 49 0.0011 32.8 3.8 36 86-124 501-536 (539)
357 PRK12771 putative glutamate sy 33.5 14 0.0003 36.5 0.0 27 207-233 498-530 (564)
358 TIGR02731 phytoene_desat phyto 33.1 47 0.001 31.4 3.5 33 84-119 420-452 (453)
359 PRK11168 glpC sn-glycerol-3-ph 32.7 22 0.00047 33.3 1.1 20 209-228 50-69 (396)
360 TIGR01423 trypano_reduc trypan 32.6 54 0.0012 31.9 3.9 34 82-120 316-349 (486)
361 COG1141 Fer Ferredoxin [Energy 32.5 22 0.00047 25.6 0.9 21 207-227 2-22 (68)
362 TIGR03336 IOR_alpha indolepyru 32.1 26 0.00056 35.1 1.6 22 208-230 574-595 (595)
363 PRK07570 succinate dehydrogena 32.0 22 0.00048 31.8 1.0 18 211-228 210-227 (250)
364 TIGR01811 sdhA_Bsu succinate d 32.0 62 0.0013 32.5 4.3 43 81-123 380-425 (603)
365 PRK05329 anaerobic glycerol-3- 31.5 79 0.0017 30.4 4.8 42 81-122 377-419 (422)
366 PTZ00058 glutathione reductase 31.1 62 0.0014 32.2 4.1 40 81-120 362-430 (561)
367 TIGR02053 MerA mercuric reduct 30.4 57 0.0012 31.1 3.6 34 82-120 294-327 (463)
368 TIGR00292 thiazole biosynthesi 30.4 64 0.0014 28.6 3.7 43 81-123 209-253 (254)
369 PRK12576 succinate dehydrogena 30.0 24 0.00051 32.0 0.9 18 211-228 204-221 (279)
370 COG0479 FrdB Succinate dehydro 29.9 19 0.0004 32.1 0.2 19 210-228 139-157 (234)
371 PRK11274 glcF glycolate oxidas 29.8 22 0.00048 33.4 0.7 16 213-228 73-88 (407)
372 PLN02815 L-aspartate oxidase 29.8 64 0.0014 32.4 3.9 43 81-123 387-433 (594)
373 PF07295 DUF1451: Protein of u 29.2 1E+02 0.0022 25.4 4.4 61 136-196 33-103 (146)
374 TIGR03452 mycothione_red mycot 28.6 67 0.0014 30.7 3.8 34 82-120 293-326 (452)
375 TIGR02951 DMSO_dmsB DMSO reduc 28.6 43 0.00092 27.4 2.1 27 207-233 56-84 (161)
376 PRK06370 mercuric reductase; V 28.6 71 0.0015 30.5 3.9 34 82-120 299-332 (463)
377 PLN00129 succinate dehydrogena 28.3 26 0.00056 31.9 0.8 18 211-228 242-259 (276)
378 PRK07804 L-aspartate oxidase; 28.2 61 0.0013 31.9 3.5 43 81-123 367-413 (541)
379 PRK08275 putative oxidoreducta 28.1 77 0.0017 31.2 4.2 41 81-125 366-406 (554)
380 COG1150 HdrC Heterodisulfide r 27.8 25 0.00054 30.4 0.6 16 214-229 84-99 (195)
381 PLN02546 glutathione reductase 27.7 67 0.0015 32.0 3.7 35 81-120 377-411 (558)
382 PRK07843 3-ketosteroid-delta-1 27.4 1.2E+02 0.0025 30.1 5.3 39 83-121 513-555 (557)
383 PTZ00052 thioredoxin reductase 27.4 76 0.0017 30.9 4.0 34 83-120 306-339 (499)
384 COG3383 Uncharacterized anaero 27.3 25 0.00054 36.6 0.6 33 208-240 187-219 (978)
385 PRK07845 flavoprotein disulfid 27.2 73 0.0016 30.6 3.8 35 81-120 301-335 (466)
386 PRK05352 Na(+)-translocating N 27.2 30 0.00065 33.6 1.1 20 209-228 409-430 (448)
387 PRK12575 succinate dehydrogena 27.0 28 0.0006 30.8 0.8 17 212-228 200-216 (235)
388 TIGR03379 glycerol3P_GlpC glyc 27.0 29 0.00062 32.5 0.9 18 211-228 50-67 (397)
389 TIGR02486 RDH reductive dehalo 26.9 23 0.00049 32.8 0.2 20 212-231 204-223 (314)
390 TIGR01424 gluta_reduc_2 glutat 26.8 80 0.0017 30.0 3.9 35 81-120 290-324 (446)
391 PRK07846 mycothione reductase; 26.7 77 0.0017 30.3 3.8 34 82-120 290-323 (451)
392 PRK06912 acoL dihydrolipoamide 26.7 72 0.0016 30.4 3.6 33 83-120 296-328 (458)
393 PF09657 Cas_Csx8: CRISPR-asso 26.6 1.8E+02 0.004 28.2 6.2 70 102-177 355-424 (441)
394 PF13459 Fer4_15: 4Fe-4S singl 26.6 30 0.00065 23.9 0.7 20 208-227 1-20 (65)
395 TIGR02374 nitri_red_nirB nitri 26.6 69 0.0015 33.2 3.7 39 81-120 261-299 (785)
396 PRK11121 nrdG anaerobic ribonu 26.6 59 0.0013 26.5 2.6 23 203-225 14-37 (154)
397 TIGR00273 iron-sulfur cluster- 26.4 27 0.00058 33.8 0.6 17 212-228 342-358 (432)
398 PRK06115 dihydrolipoamide dehy 26.2 73 0.0016 30.6 3.6 35 81-120 302-336 (466)
399 PRK12837 3-ketosteroid-delta-1 25.8 1.1E+02 0.0024 29.8 4.8 38 83-120 468-509 (513)
400 PRK12845 3-ketosteroid-delta-1 25.8 1.3E+02 0.0028 30.0 5.3 38 83-120 521-562 (564)
401 COG2768 Uncharacterized Fe-S c 25.5 32 0.00069 32.1 0.9 26 206-231 214-239 (354)
402 TIGR03315 Se_ygfK putative sel 25.3 39 0.00085 36.3 1.6 18 211-228 879-900 (1012)
403 PF13370 Fer4_13: 4Fe-4S singl 25.2 22 0.00047 24.3 -0.2 18 210-227 1-18 (58)
404 COG1053 SdhA Succinate dehydro 25.2 1.9E+02 0.0041 29.0 6.3 44 84-127 369-416 (562)
405 COG2221 DsrA Dissimilatory sul 25.2 21 0.00046 33.1 -0.3 27 208-234 167-193 (317)
406 COG4231 Indolepyruvate ferredo 24.8 33 0.00071 34.8 0.9 26 206-231 601-626 (640)
407 PRK09853 putative selenate red 24.8 36 0.00078 36.6 1.2 22 207-229 921-942 (1019)
408 TIGR00314 cdhA CO dehydrogenas 24.5 25 0.00054 36.6 -0.0 21 208-228 432-452 (784)
409 PRK05976 dihydrolipoamide dehy 24.4 89 0.0019 29.9 3.8 32 84-120 310-341 (472)
410 TIGR01936 nqrA NADH:ubiquinone 24.0 31 0.00067 33.5 0.5 16 213-228 373-388 (447)
411 COG0348 NapH Polyferredoxin [E 23.9 27 0.00058 33.1 0.1 28 210-237 240-269 (386)
412 PRK08010 pyridine nucleotide-d 23.4 95 0.0021 29.3 3.7 34 82-120 282-315 (441)
413 PF13247 Fer4_11: 4Fe-4S diclu 23.4 52 0.0011 25.1 1.6 30 208-237 2-33 (98)
414 PF06170 DUF983: Protein of un 23.3 44 0.00095 25.0 1.1 23 212-244 8-30 (86)
415 PRK08493 NADH dehydrogenase su 22.7 35 0.00076 35.8 0.6 22 206-227 134-155 (819)
416 PRK14989 nitrite reductase sub 22.5 89 0.0019 32.9 3.6 38 82-120 271-308 (847)
417 PRK13512 coenzyme A disulfide 22.1 96 0.0021 29.4 3.5 39 82-120 267-310 (438)
418 PRK05352 Na(+)-translocating N 21.9 36 0.00079 33.1 0.6 18 210-227 371-388 (448)
419 COG1139 Uncharacterized conser 21.5 40 0.00086 32.8 0.7 18 211-228 356-373 (459)
420 PRK13552 frdB fumarate reducta 21.3 44 0.00095 29.6 0.9 17 212-228 205-221 (239)
421 PTZ00153 lipoamide dehydrogena 21.0 1E+02 0.0022 31.5 3.6 33 84-121 462-494 (659)
422 PRK06854 adenylylsulfate reduc 20.8 1.5E+02 0.0034 29.6 4.8 41 81-125 392-433 (608)
423 COG2878 Predicted NADH:ubiquin 20.7 31 0.00068 29.7 -0.1 25 207-231 109-133 (198)
424 PRK09129 NADH dehydrogenase su 20.4 32 0.0007 35.4 -0.1 22 205-226 136-157 (776)
No 1
>KOG2415|consensus
Probab=100.00 E-value=1.6e-79 Score=566.47 Aligned_cols=240 Identities=70% Similarity=1.254 Sum_probs=225.7
Q ss_pred CCCCCCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCcccc
Q psy2242 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTF 84 (246)
Q Consensus 5 ~~~~~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~ 84 (246)
+.++|||+|+||+. |..|+||+|+.+||.||+++|+++||++|+||.|++.||||++++|+||+++|||||++|++++
T Consensus 306 ~~~tYGGsFlYh~~--d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F 383 (621)
T KOG2415|consen 306 DNDTYGGSFLYHFN--DPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF 383 (621)
T ss_pred cCCccCceeEEEcC--CCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence 45799999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhh
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~ 164 (246)
||.+||||+|||+|..+++|.|+||+|||+|||+|+++|...+.+....-.+..|++.+++||++|||+.+||+++.|+.
T Consensus 384 PGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~ 463 (621)
T KOG2415|consen 384 PGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHG 463 (621)
T ss_pred CCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCccccc
Confidence 99999999999999999999999999999999999999976653321012367999999999999999999999999999
Q ss_pred ccccHHHHHHHHH-HHHhcCCCCcccccC---------------------------------------------------
Q psy2242 165 KLGLWGGLAYSGA-SIMMKGIEPWTFKWN--------------------------------------------------- 192 (246)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~--------------------------------------------------- 192 (246)
++|.|+||+++++ .++++|+.||||+|.
T Consensus 464 ~lG~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~ 543 (621)
T KOG2415|consen 464 KLGLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLR 543 (621)
T ss_pred ccccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeec
Confidence 9999999999999 889999999999998
Q ss_pred -----------------------ceEEEEeCCCC-CccceEEecccccccccccccCCCCCceeeCCCCCCCCCCCCC
Q psy2242 193 -----------------------SVYEYVPLEDG-SGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246 (246)
Q Consensus 193 -----------------------~vy~~~~~~~~-~~~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg~g~~y~~~ 246 (246)
|||||++||.+ .++|||||+||||||||||||||.|||+|++||||+||.|+.|
T Consensus 544 ~~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 544 DDDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred CCCcchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 99999988765 4579999999999999999999999999999999999999988
No 2
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-36 Score=288.14 Aligned_cols=180 Identities=25% Similarity=0.404 Sum_probs=164.5
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEEEEccC-CCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCcccc
Q psy2242 6 FNTYGGSFLYHLNEPSPLVAVGFVVGLD-YTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTF 84 (246)
Q Consensus 6 ~~~~GgGwiy~~~l~~~~vsVGlv~~l~-~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~ 84 (246)
.+.+|+||+|++. +++|||+++.++ +.+...++++++++|++||.+++++++++.++|++|.||+||+.++|++++
T Consensus 218 ~g~~g~G~~~~~~---d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~ 294 (429)
T PRK10015 218 DGLMGGGFLYTNK---DSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVN 294 (429)
T ss_pred CCCCCceEEEEcC---CcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcccc
Confidence 4577899999998 999999998773 455667899999999999999999999999999999999999998999999
Q ss_pred CCEEEeccCccCCCC--cccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhh
Q psy2242 85 PGGCLVGCTAGFLNV--PKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSF 162 (246)
Q Consensus 85 ~G~llVGDAAG~vdp--~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~ 162 (246)
+|+++|||||||+|| ++++||++||.||++|||+|.++++++|+| +..|+.|++.|+++|+++||+.+|+++.+|
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s---~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~ 371 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFS---ASSLAQYKRELEQSCVMRDMQHFRKIPALM 371 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCc---cccHHHHHHHHHHCHHHHHHHHHhChHhhh
Confidence 999999999999985 699999999999999999999999988887 478999999999999999999999999999
Q ss_pred hh--ccccHHHHHHHHH-H-HHhcCCCCccccc
Q psy2242 163 HS--KLGLWGGLAYSGA-S-IMMKGIEPWTFKW 191 (246)
Q Consensus 163 ~~--~~~~~~~~~~~~~-~-~~~~g~~~~~~~~ 191 (246)
++ .+..||.|+++++ + ++++|+|++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (429)
T PRK10015 372 ENPRLFSQYPRMVADIMNDMFTIDGKPNQPVRK 404 (429)
T ss_pred cCccHHHHHHHHHHHHHHHhcccCCccchHHHH
Confidence 86 3789999999999 5 4779999887765
No 3
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=3.9e-34 Score=270.76 Aligned_cols=179 Identities=25% Similarity=0.387 Sum_probs=163.1
Q ss_pred CCCCCeEEEEEeCCCCCeEEEEEEEccCC-CCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCcccc
Q psy2242 6 FNTYGGSFLYHLNEPSPLVAVGFVVGLDY-TNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTF 84 (246)
Q Consensus 6 ~~~~GgGwiy~~~l~~~~vsVGlv~~l~~-~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~ 84 (246)
.+.+||||+|++. +++|||+++.++. .+...++++++++|++||.+++++++++.++|++|.+|++|+.++|++++
T Consensus 218 ~g~~ggG~~~~~~---~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~ 294 (428)
T PRK10157 218 DGLMGGGFLYTNE---NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVG 294 (428)
T ss_pred CCCcCceeEEEcC---CeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceec
Confidence 4578899999987 8999999998864 44457899999999999999999999999999999999999988899999
Q ss_pred CCEEEeccCccCCCC--cccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhh
Q psy2242 85 PGGCLVGCTAGFLNV--PKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSF 162 (246)
Q Consensus 85 ~G~llVGDAAG~vdp--~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~ 162 (246)
+||++|||||||+|| ++++||++||.||++|||+|.++++++++| +..|+.|+++|+++ +++||+.+|+++.++
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s---~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~ 370 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFS---KQKLAEYRQHLESG-PLRDMRMYQKLPAFL 370 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHHh-HHHHHHHHhccHHHh
Confidence 999999999999998 599999999999999999999999999887 46899999999999 789999999999999
Q ss_pred hh--ccccHHHHHHHHH-HH-HhcCCCCccccc
Q psy2242 163 HS--KLGLWGGLAYSGA-SI-MMKGIEPWTFKW 191 (246)
Q Consensus 163 ~~--~~~~~~~~~~~~~-~~-~~~g~~~~~~~~ 191 (246)
++ .|..||.|+++++ ++ +++|+|++++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (428)
T PRK10157 371 DNPRMFSGYPELAVGVARDLFTIDGSAPELMRK 403 (428)
T ss_pred cCccHHHHHHHHHHHHHHHheeeCCcCchhHHH
Confidence 75 4899999999999 54 779999998765
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.95 E-value=3.2e-27 Score=221.24 Aligned_cols=148 Identities=39% Similarity=0.538 Sum_probs=132.8
Q ss_pred CCCCCCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHH-HHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccc
Q psy2242 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPF-KEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLT 83 (246)
Q Consensus 5 ~~~~~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~-~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~ 83 (246)
+....||+|+||+. ++.++||+++.++. +..++. +++++|++||.+++.+.+++.+++.++.||++++.+.| ++
T Consensus 193 ~~~~~Gy~wifP~~--~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~ 267 (396)
T COG0644 193 DVGPGGYGWIFPLG--DGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LV 267 (396)
T ss_pred ccCCCceEEEEECC--CceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cc
Confidence 45678999999999 88999999998876 455555 99999999999999988899999999999999999877 99
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhh
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~ 163 (246)
++|+++||||||++||++++||++||.||++|||+|.++++.+ . +.|+.|++.|++++..++++..++.+.++.
T Consensus 268 ~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-~-----~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T COG0644 268 GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-E-----EALAEYERLLRKSLAREDLKSLRLLKLLLR 341 (396)
T ss_pred cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-h-----hHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 9999999999999999999999999999999999999999765 2 479999999999998888887777776664
No 5
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.82 E-value=1.6e-19 Score=169.51 Aligned_cols=139 Identities=21% Similarity=0.152 Sum_probs=107.6
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccCCEEE
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCL 89 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~ll 89 (246)
||+|+||.+ +.++||++... ......++.+.++.+ ....+.+++.++..++.+|.+. .++.+.+|++|
T Consensus 207 gY~WifP~~---~~~~VG~g~~~----~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~ll 274 (398)
T TIGR02028 207 FYGWVFPKC---DHVAVGTGTVA----AKPEIKRLQSGIRAR--AAGKVAGGRIIRVEAHPIPEHP---RPRRVVGRVAL 274 (398)
T ss_pred ceEEEEECC---CeEEEEEEeCC----CCccHHHHHHhhhhh--hhhccCCCcEEEEEEEeccccc---cccEECCCEEE
Confidence 479999988 56789997532 111222333333322 2334556778888888999853 45788999999
Q ss_pred eccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCC--CCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhh
Q psy2242 90 VGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGD--EVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164 (246)
Q Consensus 90 VGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~--s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~ 164 (246)
||||||++||++++||++||+||++||++|.++++.++. + +..|+.|+++|++. +.++++....++.+|.+
T Consensus 275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~---~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR02028 275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTE---EGDLAGYLRRWDKE-YRPTYRVLDLLQRVFYR 347 (398)
T ss_pred EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999987762 3 35799999999987 47889999999999864
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.81 E-value=3e-19 Score=170.72 Aligned_cols=139 Identities=22% Similarity=0.195 Sum_probs=110.4
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccCCEEE
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCL 89 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~ll 89 (246)
|++|+||.+ +.++||++.... ..++.++++.+... +...+.+++.++..++.||.+ + .++.+.++++|
T Consensus 246 ~Y~WifP~g---~~~~VG~g~~~~----~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~ip~~-~--~~~~~~~~vlL 313 (450)
T PLN00093 246 FYGWVFPKC---DHVAVGTGTVVN----KPAIKKYQRATRNR--AKDKIAGGKIIRVEAHPIPEH-P--RPRRVRGRVAL 313 (450)
T ss_pred ceEEEEECC---CcEEEEEEEccC----CCChHHHHHHHHHH--hhhhcCCCeEEEEEEEEcccc-c--ccceeCCCcEE
Confidence 588999988 578999975431 23445555555432 234566788888889999983 3 45788999999
Q ss_pred eccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC--CCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhh
Q psy2242 90 VGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG--DEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164 (246)
Q Consensus 90 VGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd--~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~ 164 (246)
||||||++||++++||++||+||++|||+|.++++.++ .+ ...|+.|+++|++.| .++++....++.+|.+
T Consensus 314 vGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s---~~~L~~Y~~~~~~~~-g~~~~~~~~l~~~~~~ 386 (450)
T PLN00093 314 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVD---EADLREYLRKWDKKY-WPTYKVLDILQKVFYR 386 (450)
T ss_pred EeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999997663 22 256999999999875 7889999999998863
No 7
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.73 E-value=4.3e-17 Score=151.95 Aligned_cols=134 Identities=23% Similarity=0.291 Sum_probs=104.1
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccCCEEE
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCL 89 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~ll 89 (246)
+++|+||.. +.++||+++.. ...++.++++.|+++.. ++.++.++..++.+|.+ .+++.+.+++++
T Consensus 203 ~y~wv~P~~---~~~~vg~~~~~----~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~l 268 (388)
T TIGR02023 203 FYGWVFPKG---DHIAVGTGTGT----HGFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAML 268 (388)
T ss_pred ceEEEeeCC---CeeEEeEEECC----CCCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEE
Confidence 578888877 67899987642 22356667777765432 44556666667778873 246778899999
Q ss_pred eccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhh
Q psy2242 90 VGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163 (246)
Q Consensus 90 VGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~ 163 (246)
||||||+++|++++||++||+||++||++|.++++.++. ..|+.|++.|++.| .+++...+.++.++.
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~-----~~L~~Y~~~~~~~~-~~~~~~~~~~~~~~~ 336 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDA-----TDLRHYERKFMKLY-GTTFRVLRVLQMVYY 336 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999976542 57999999999875 677877777776663
No 8
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.43 E-value=5.2e-14 Score=106.99 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=44.4
Q ss_pred ceEEEEeCCCCCccceEEecccccccccccccCCC-CCceeeCCCCCCCCCCCC
Q psy2242 193 SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPT-QNINWVVPEGGGGPAYNG 245 (246)
Q Consensus 193 ~vy~~~~~~~~~~~~~~i~~~nc~~c~~c~i~~p~-~~i~w~~p~gg~g~~y~~ 245 (246)
++|++.++ .++.+++++|+|||||+|-||. .+|.|++|+||.|+.|+.
T Consensus 50 ~~Y~~~~~-----g~l~~~yegClECGTCRvlc~~~~~i~W~YPrgg~GI~yrf 98 (99)
T COG2440 50 GCYKLIDD-----GKLRFDYEGCLECGTCRVLCPHSGLIQWRYPRGGFGITYRY 98 (99)
T ss_pred HHeeECCC-----CcEEEeecCeeeccceeEecCCCcceEEecCCCCcCEEEec
Confidence 99999762 4899999999999999999999 899999999999999974
No 9
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.36 E-value=4.3e-12 Score=111.81 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=76.4
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHh-cCCCccccccCCeEeeecceeeecCCCccCCccccCCEE
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFK-THPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGC 88 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k-~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~l 88 (246)
+..|++|.. +++++||++...+. +..++.+.++.+. .+|. ++..+.++.....+|.... .++.+.++++
T Consensus 195 ~~~~~~P~~--~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~--~~~~~~~~v~ 264 (295)
T TIGR02032 195 GYGWVFPKG--DGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGRP--DDKTVRGNVL 264 (295)
T ss_pred ceEEEEeCC--CCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCCC--CCccccCCEE
Confidence 455666655 88999999876542 3457788888875 5564 4555555545556676432 4578899999
Q ss_pred EeccCccCCCCcccccchhHHHHHHHHHHHH
Q psy2242 89 LVGCTAGFLNVPKIKGTHNAMKSGMLAAEAT 119 (246)
Q Consensus 89 lVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 119 (246)
++||||+++||++++|+++||+||.+|||+|
T Consensus 265 liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 265 LVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred EEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999975
No 10
>PLN02697 lycopene epsilon cyclase
Probab=99.30 E-value=1.8e-11 Score=119.50 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=98.6
Q ss_pred CeEEEEEeCCCCCeEEE-EEEEccCCCCCCCC---HHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccC
Q psy2242 10 GGSFLYHLNEPSPLVAV-GFVVGLDYTNPYLS---PFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFP 85 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsV-Glv~~l~~~~~~~~---p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~ 85 (246)
+.+|+|.++++++++.| +..... .+.++ ..+.++++..+..+ +..+.++.....||.+|. +|+. .+
T Consensus 303 ~p~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~~L~~~l~~~Gi----~~~~i~~~E~g~iPm~g~--~~~~-~~ 372 (529)
T PLN02697 303 YPTFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKKRLMSRLETMGI----RILKTYEEEWSYIPVGGS--LPNT-EQ 372 (529)
T ss_pred CceEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHHHHHHHHHhCCC----CcceEEEEEeeeecCCCC--Cccc-CC
Confidence 45688888888999999 875321 22222 33344444333223 335666767788899873 5555 78
Q ss_pred CEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCC------CCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 86 GGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGD------EVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 86 G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~------s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++++||||||+++|.++-||..+|.+|..||++|.++++.++. ...+...++.|++.|.+. ++++++.+....
T Consensus 373 ~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e-~~r~~~~~~~g~ 451 (529)
T PLN02697 373 KNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE-RKRQRAFFLFGL 451 (529)
T ss_pred CeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987750 001135688899999875 345555444444
Q ss_pred hhh
Q psy2242 160 PSF 162 (246)
Q Consensus 160 ~~~ 162 (246)
.+|
T Consensus 452 ~~l 454 (529)
T PLN02697 452 ALI 454 (529)
T ss_pred HHH
Confidence 444
No 11
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.20 E-value=4.8e-11 Score=114.43 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcC-CCccccccCCeEeeecceeeecCCCccCCccccCCE
Q psy2242 9 YGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTH-PAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGG 87 (246)
Q Consensus 9 ~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~h-P~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~ 87 (246)
.-.||+|.+++++++.+ |+|...++. ++.+.++.|+++ +.... ... ..+.... |. ..+..++|+
T Consensus 254 ~~~GW~W~IPL~~~~~~-G~V~s~~~~----s~~~A~~~l~~~l~~~~~-~~~-~~i~~~~------g~--~~~~~~~n~ 318 (454)
T PF04820_consen 254 FEAGWIWYIPLQNRRGS-GYVYSSDFI----SDDEAEAELLAYLGGSPE-AEP-RHIRFRS------GR--RKQFWGKNC 318 (454)
T ss_dssp ESSEEEEEEEESSEEEE-EEEEETTTS----HHHHHHHHHHHHHTCHCT-TSC-EEEE-S-------EE--ESSSEETTE
T ss_pred cCCceEEEccCCCcceE-EEEeccccC----CHHHHHHHHHHhcchhhh-cch-hhhcccc------cc--hhhcccCCE
Confidence 35689888888766666 998765543 555555555432 11111 111 2222111 22 348899999
Q ss_pred EEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHh
Q psy2242 88 CLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSS 146 (246)
Q Consensus 88 llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s 146 (246)
++|||||||+||+.+.||++||. |++++.+.|...+.+ ...++.|++.+++.
T Consensus 319 vavGdAAgFiDPL~StGI~la~~----aa~~l~~~l~~~~~~---~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 319 VAVGDAAGFIDPLESTGIHLALS----AAEALAEALPDDDFS---PAALDRYNRRMRRE 370 (454)
T ss_dssp EE-CCCTEE--GGGSHHHHHHHH----HHHHHHHTHHCTTCC---HHHHHHHHHHHHHH
T ss_pred EEEcchhhccCccccccHHHHHH----HHHHHHHhcccCCCC---HHHHHHHHHHHHHH
Confidence 99999999999999999999999 777788888766654 25678899888765
No 12
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.14 E-value=3.2e-10 Score=105.13 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=80.3
Q ss_pred EEEEeCCCCCeEEEEEEEccCCCCCCCCHHH---HHHHHh-cCCCccccccCCeEeeecceeeecCCCccCCccccCCEE
Q psy2242 13 FLYHLNEPSPLVAVGFVVGLDYTNPYLSPFK---EFQRFK-THPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGC 88 (246)
Q Consensus 13 wiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~---~l~~~k-~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~l 88 (246)
|+|.++.+++++.|+.....+ .+..++.+ .++++. ... ++..+.++.....+|.++.. |. +.++++
T Consensus 196 f~~~lP~~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~g-----~~~~~i~~~~~~~iP~~~~~--~~-~~~rv~ 265 (388)
T TIGR01790 196 FLYAMPLGSTRVFIEETSLAD--RPALPRDRLRQRILARLNAQG-----WQIKTIEEEEWGALPVGLPG--PF-LPQRVA 265 (388)
T ss_pred eEEEeecCCCeEEEEeccccC--CCCCCHHHHHHHHHHHHHHcC-----CeeeEEEeeeeEEEecccCC--Cc-cCCCee
Confidence 666666558898887532211 12233333 333322 222 12234444455677886643 33 789999
Q ss_pred EeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHh
Q psy2242 89 LVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSS 146 (246)
Q Consensus 89 lVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s 146 (246)
+||||||+++|++++|+.+||+++..+|+++.++++.+. +..++.|++.++..
T Consensus 266 liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~-----~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 266 AFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSS-----ELATAAWDGLWPTE 318 (388)
T ss_pred eeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHhchHH
Confidence 999999999999999999999999999999999996553 25678888776654
No 13
>PRK11445 putative oxidoreductase; Provisional
Probab=99.12 E-value=2.4e-10 Score=105.44 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=48.2
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
..+++++||||||+++|++++|+.+||+||.+||+++.+++ + ..|+.|++.+++
T Consensus 262 ~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~---~------~~~~~y~~~~~~ 315 (351)
T PRK11445 262 GKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP---E------KLNTAYWRKTRK 315 (351)
T ss_pred CCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc---c------chHHHHHHHHHH
Confidence 45899999999999999999999999999999999997654 1 468999999986
No 14
>PLN02463 lycopene beta cyclase
Probab=99.11 E-value=1.7e-09 Score=103.74 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=74.3
Q ss_pred EEEEeCCCCCeEEEEEEEccCCCCCCCC---HHHHHHHHhcCCCccccccCCeEeeecceeeecCCCccCCccccCCEEE
Q psy2242 13 FLYHLNEPSPLVAVGFVVGLDYTNPYLS---PFKEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCL 89 (246)
Q Consensus 13 wiy~~~l~~~~vsVGlv~~l~~~~~~~~---p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~ll 89 (246)
|+|.++.+++++.|+...... ++..+ ..+.++++..+..+ +..+..+.....||.|+. .|. ..+++++
T Consensus 228 FlY~~P~~~~~~~vEeT~l~s--~~~~~~~~lk~~L~~~l~~~Gi----~~~~i~~~E~~~IPmg~~--~~~-~~~~~~~ 298 (447)
T PLN02463 228 FLYAMPFSSNRIFLEETSLVA--RPGLPMDDIQERMVARLRHLGI----KVKSVEEDEKCVIPMGGP--LPV-IPQRVLG 298 (447)
T ss_pred eEEEEecCCCeEEEEeeeeec--CCCCCHHHHHHHHHHHHHHCCC----CcceeeeeeeeEeeCCCC--CCC-CCCCEEE
Confidence 555555559999988753322 22233 22233333222222 223455556668999876 333 4679999
Q ss_pred eccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCC
Q psy2242 90 VGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGD 128 (246)
Q Consensus 90 VGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~ 128 (246)
||||||+++|.++.||..||++|.+||++|.++|++++.
T Consensus 299 ~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~ 337 (447)
T PLN02463 299 IGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRS 337 (447)
T ss_pred ecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999987664
No 15
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.07 E-value=5e-11 Score=91.20 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=41.1
Q ss_pred ceEEEEeCCCCCccceEEecccccccccccccCCCCC-ceeeCCCCCCCCCCCC
Q psy2242 193 SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQN-INWVVPEGGGGPAYNG 245 (246)
Q Consensus 193 ~vy~~~~~~~~~~~~~~i~~~nc~~c~~c~i~~p~~~-i~w~~p~gg~g~~y~~ 245 (246)
++|+.. ++ ..++||+++|++||+|.+.||... |+|++|+||+|+.|+.
T Consensus 46 gA~~~~--e~---G~V~vd~e~CigCg~C~~~C~~~~~~~W~yPrgg~GV~yr~ 94 (95)
T PRK15449 46 GLYKKQ--DD---GSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRY 94 (95)
T ss_pred hhcEeC--CC---CCEEEcCCCCCcchhhhhhcCCCCccCccCCCCCcCEEEec
Confidence 777643 22 479999999999999999998884 7999999999999974
No 16
>PRK06185 hypothetical protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=93.78 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCC--CCCHHHHHHHHh-cCCCccccccCCeEeeecceeeecCCCccCCccccCC
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNP--YLSPFKEFQRFK-THPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPG 86 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~--~~~p~~~l~~~k-~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G 86 (246)
.+|+++..+++ +.++|+.....+.... ..+..++.+++. ..|.+.+.+..-+..+ .....|..- ...++.+.++
T Consensus 209 ~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l~~-~~~~~~~~~r 285 (407)
T PRK06185 209 PGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDVRV-DRLRRWHRPG 285 (407)
T ss_pred CCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEEec-cccccccCCC
Confidence 34455555654 7889888775543211 123344445554 3566665554322211 112222211 1245788899
Q ss_pred EEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhh
Q psy2242 87 GCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163 (246)
Q Consensus 87 ~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~ 163 (246)
++||||||..++|+.++|+++||+++..+|+.+.++++.++.+ ...|+.|++.-+.. ...-+...+.+..+|.
T Consensus 286 v~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~---~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 358 (407)
T PRK06185 286 LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVS---DRDLAAVQRRREFP-TRVTQALQRRIQRRLL 358 (407)
T ss_pred eEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCcc---HHHHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998766543 25789999885542 2222344455555454
No 17
>PRK09126 hypothetical protein; Provisional
Probab=98.77 E-value=3.2e-08 Score=91.79 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=64.3
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC-CCCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA-GDEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g-d~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++||||||.+++|+.++|+.+||.+|..+|+++.++++.+ +.+. .+.|+.|++..+.. ..+-.+..+.
T Consensus 274 ~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~--~~~l~~Y~~~r~~~-~~~~~~~~~~ 350 (392)
T PRK09126 274 AHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGA--ASLLERYERKHRLA-TRPLYHATNA 350 (392)
T ss_pred HHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 357788999999999999999999999999999999999999988643 2210 24689999988764 3343555666
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|.
T Consensus 351 ~~~~~~ 356 (392)
T PRK09126 351 IAALYT 356 (392)
T ss_pred HHHHHC
Confidence 666665
No 18
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.70 E-value=1.2e-07 Score=87.04 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=65.6
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++||||||..++|+.++|+.+||+++..+|+.+.+++..++ .+. ...|+.|++..+.. +..-++..+.
T Consensus 270 ~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~--~~~l~~y~~~r~~~-~~~~~~~~~~ 346 (385)
T TIGR01988 270 AKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGS--PRVLQRYERRRRFD-NAAMLGATDG 346 (385)
T ss_pred hhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3567889999999999999999999999999999999999998876442 210 25789999988764 4444666777
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|.
T Consensus 347 ~~~~~~ 352 (385)
T TIGR01988 347 LNRLFS 352 (385)
T ss_pred HHHHHc
Confidence 777775
No 19
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.61 E-value=7e-08 Score=86.56 Aligned_cols=63 Identities=21% Similarity=0.146 Sum_probs=51.4
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSS 146 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s 146 (246)
++.+.++++||||||..++|+.++|+.+||.++..+|+.+.++++ |+.. .+.|+.|++..+..
T Consensus 286 ~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~-g~~~---~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 286 DRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK-GEAS---EEALKAYEQERRPR 348 (356)
T ss_dssp SSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT-TSSH---HHHHHHHHHHHHHH
T ss_pred cccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhc-CCcH---HHHHHHHHHHHHHH
Confidence 467778999999999999999999999999999999999998774 4433 25688999887653
No 20
>PRK07045 putative monooxygenase; Reviewed
Probab=98.60 E-value=3.5e-07 Score=85.01 Aligned_cols=81 Identities=11% Similarity=-0.002 Sum_probs=60.0
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
+++.+.++++||||||-.++|+.++|+.+||.++..+|+++.+++...... .+.|+.|++..+.. ...=.+..+.+
T Consensus 279 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~---~~~L~~Ye~~R~~~-~~~~~~~~~~~ 354 (388)
T PRK07045 279 LDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIAL---ADALERFERIRRPV-NEAVISYGHAL 354 (388)
T ss_pred cccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHhhhH-HHHHHhhhHHH
Confidence 457788999999999999999999999999999999999998776422111 25788999876642 22223445555
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
...|+
T Consensus 355 ~~~~~ 359 (388)
T PRK07045 355 ATTYH 359 (388)
T ss_pred hhhcc
Confidence 55555
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.59 E-value=3.7e-07 Score=84.88 Aligned_cols=82 Identities=16% Similarity=-0.039 Sum_probs=61.0
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
+++.+.++++||||||..++|+.++|+.+||.++..+|+.+.++++.+. .+ ....|+.|++ .|+.....-....+.
T Consensus 274 ~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~--~~~~L~~Ye~-~R~~~~~~~~~~~~~ 350 (403)
T PRK07333 274 ARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIG--SLDVLERYQR-WRRFDTVRMGVTTDV 350 (403)
T ss_pred hhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999998886432 11 1367999997 554322222333455
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|.
T Consensus 351 ~~~~~~ 356 (403)
T PRK07333 351 LNRLFS 356 (403)
T ss_pred HHHHHc
Confidence 555554
No 22
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.55 E-value=7.6e-07 Score=82.42 Aligned_cols=82 Identities=17% Similarity=0.048 Sum_probs=65.0
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
++.+.++++||||||..++|+.++|+.+||.++..+|+++..++..+. .+. ...|+.|++..+.. ....++..+.+
T Consensus 277 ~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~--~~~l~~Y~~~R~~~-~~~~~~~~~~~ 353 (395)
T PRK05732 277 AQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGD--YAVLQRYQQRRQQD-REATIGFTDGL 353 (395)
T ss_pred hhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456789999999999999999999999999999999999988775432 110 14689999988764 34556777778
Q ss_pred hhhhhh
Q psy2242 159 RPSFHS 164 (246)
Q Consensus 159 ~~~~~~ 164 (246)
..+|..
T Consensus 354 ~~~~~~ 359 (395)
T PRK05732 354 VRLFAN 359 (395)
T ss_pred HHHHcC
Confidence 777763
No 23
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.52 E-value=1.8e-06 Score=80.60 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=63.0
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++...++++||||||..+.|+.++|+++||.++..+|+.+.++++.+. ...|+.|++..+.. ..+-.+..+.+.
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~-----~~~L~~Ye~~r~~r-~~~~~~~~~~~~ 347 (392)
T PRK08243 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGD-----TALLDAYSATALRR-VWKAERFSWWMT 347 (392)
T ss_pred ccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999988875432 25799999988754 345556666666
Q ss_pred hhhh
Q psy2242 160 PSFH 163 (246)
Q Consensus 160 ~~~~ 163 (246)
..++
T Consensus 348 ~~~~ 351 (392)
T PRK08243 348 SMLH 351 (392)
T ss_pred HHhh
Confidence 6665
No 24
>PRK06753 hypothetical protein; Provisional
Probab=98.51 E-value=1.7e-06 Score=79.70 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=87.8
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCC---CCCHHHHHHHHhc-CCCccccccCCeEeeecceeeecCCCccCCccccC
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNP---YLSPFKEFQRFKT-HPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFP 85 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~---~~~p~~~l~~~k~-hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~ 85 (246)
|.-|+++.. ++.+...+.+..+...+ ..+..++.+.|+. +|.++++++...... ....+......+++.+.+
T Consensus 195 g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 270 (373)
T PRK06753 195 GRFGIVPLL--NNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETG--ILHHDIYDLKPLKSFVYG 270 (373)
T ss_pred CEEEEEEcC--CCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCccc--ceeeccccccccccccCC
Confidence 344555555 78777776554321111 1222333334443 344555554321110 001111111223466789
Q ss_pred CEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhh
Q psy2242 86 GGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHS 164 (246)
Q Consensus 86 G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~ 164 (246)
+++||||||..+.|..++|+.+||.++..+++++.. .+. .+.|+.|++.++.. +.+.++..+.+..+++.
T Consensus 271 rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~----~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 271 RIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDF----EKALQRYDKIRVKH-TAKVIKRSRKIGKIAQI 340 (373)
T ss_pred CEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccH----HHHHHHHHHHhhHH-HHHHHHHHHHHhHHHhc
Confidence 999999999999999999999999999999887732 222 25799999999864 56668888888888863
No 25
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.45 E-value=5.6e-07 Score=83.05 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=61.5
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
.++.+.++++||||||..++|+.++|+.+||.++..+|+++..++. +... ...|+.|++..+... ..-++..+.+
T Consensus 270 ~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~-~~~~---~~~l~~Y~~~r~~~~-~~~~~~~~~~ 344 (382)
T TIGR01984 270 AETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI-DLGT---YALLQEYLRRRQFDQ-FITIGLTDGL 344 (382)
T ss_pred hhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc-CccC---HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4567789999999999999999999999999999999999987652 1111 257999999887543 2325556666
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
..+|.
T Consensus 345 ~~~~~ 349 (382)
T TIGR01984 345 NRLFS 349 (382)
T ss_pred HHHHc
Confidence 66665
No 26
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.45 E-value=2e-06 Score=80.29 Aligned_cols=82 Identities=17% Similarity=-0.028 Sum_probs=61.4
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC-CCCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA-GDEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g-d~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++||||||..++|+.++|+.+||.++..+|+++..+++.+ +... ...|+.|++.-+ .....-++..+.
T Consensus 288 ~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~--~~~L~~Y~~~R~-~~~~~~~~~s~~ 364 (415)
T PRK07364 288 SDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGS--LAVLKRYERWRK-RENWLILGFTDL 364 (415)
T ss_pred hhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999998877543 2210 247899999544 333332455566
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|.
T Consensus 365 ~~~~~~ 370 (415)
T PRK07364 365 LDRLFS 370 (415)
T ss_pred HHHHHc
Confidence 666665
No 27
>PRK07538 hypothetical protein; Provisional
Probab=98.34 E-value=4.2e-06 Score=78.67 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
+|+.+.++++||||||..+.|..++|+.+||..+..+|+++.+. ++. ...|+.|++..+.. ..+.++..|.
T Consensus 291 ~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~----~~aL~~Ye~~R~~~-~~~~~~~s~~ 361 (413)
T PRK07538 291 LPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDP----EAALAAYEAERRPA-TAQIVLANRL 361 (413)
T ss_pred CCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCH----HHHHHHHHHHhhHH-HHHHHHHhhh
Confidence 56778899999999999999999999999999999999998752 332 25799999988764 4555666666
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.34 E-value=3.9e-06 Score=77.61 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
+++.+.+++++|||||..+.|+.++|+.+||..+..+|+.+..+...++... ...|+.|++..+.. +..=.+..+.+
T Consensus 274 ~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~--~~~l~~Ye~~R~~~-~~~~~~~~~~~ 350 (388)
T PRK07608 274 VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGD--LRLLRRYERARRED-ILALQVATDGL 350 (388)
T ss_pred hhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCcc--HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999976542222210 24689999988754 22224556666
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
..+|.
T Consensus 351 ~~~~~ 355 (388)
T PRK07608 351 QRLFA 355 (388)
T ss_pred HHHHc
Confidence 66665
No 29
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.28 E-value=8.6e-06 Score=75.59 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=60.1
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
.++.+.++++||||||..+.|+.++|+.+||+++..+|+.+.++.+.++.. .+...|+.|++.-+..- ..=......+
T Consensus 275 ~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~-~~~~~L~~Y~~~R~~~~-~~~~~~~~~l 352 (391)
T PRK08020 275 ALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAW-ASEAVLKRYQRRRMADN-LLMQSGMDLF 352 (391)
T ss_pred hhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 457788999999999999999999999999999999999998876544310 01257888988765431 1112234444
Q ss_pred hhhhhh
Q psy2242 159 RPSFHS 164 (246)
Q Consensus 159 ~~~~~~ 164 (246)
..+|++
T Consensus 353 ~~~~~~ 358 (391)
T PRK08020 353 YAGFSN 358 (391)
T ss_pred HHHHcC
Confidence 555553
No 30
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.22 E-value=4.7e-06 Score=77.25 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++.+.++++|+||||..+.|+.++|+.+||+.+...|+.+.+... +..+ ...|+.|++..+.. ...-+.....+.
T Consensus 275 ~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~-~~~~---~~~L~~Y~~~R~~~-~~~~~~~~~~~~ 349 (388)
T PRK07494 275 HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE-DPGS---AAVLAAYDRARRPD-ILSRTASVDLLN 349 (388)
T ss_pred HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC-Ccch---HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999876321 2111 25789999988753 222244455555
Q ss_pred hhhh
Q psy2242 160 PSFH 163 (246)
Q Consensus 160 ~~~~ 163 (246)
..|.
T Consensus 350 ~~~~ 353 (388)
T PRK07494 350 RSLL 353 (388)
T ss_pred HHHc
Confidence 5554
No 31
>PRK07588 hypothetical protein; Provisional
Probab=98.16 E-value=1.4e-05 Score=74.29 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
+++.+.++++||||||..++|+.++|+.+||.++...|+.+.... ++. ...|+.|++..+.. +..-....+.+
T Consensus 273 ~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~----~~al~~Y~~~R~~~-~~~~~~~~~~~ 345 (391)
T PRK07588 273 MDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDH----RRAFDAYEKRLRPF-IAGKQAAAAKF 345 (391)
T ss_pred cCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCH----HHHHHHHHHHHHHH-HHHHHhhcccc
Confidence 356678999999999999999999999999999999988876422 222 25789999987753 33334555666
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
..+|+
T Consensus 346 ~~~~~ 350 (391)
T PRK07588 346 LSVFA 350 (391)
T ss_pred ccccc
Confidence 66664
No 32
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.11 E-value=2.5e-05 Score=72.49 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=74.7
Q ss_pred CHHHHHHHHh-cCCCccccccCCeEeeecceeeecCCCccCCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHH
Q psy2242 40 SPFKEFQRFK-THPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEA 118 (246)
Q Consensus 40 ~p~~~l~~~k-~hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAea 118 (246)
+..++++.|. -+|.+.++++..+.... ..+.. ...+++.+.++++||||||-.+.|..++|+.+||.++...|++
T Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~ 319 (396)
T PRK08163 244 SKEEVLSYFEGIHPRPRQMLDKPTSWKR--WATAD--REPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKA 319 (396)
T ss_pred CHHHHHHHHcCCChHHHHHHhcCCceeE--ccccC--CCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHH
Confidence 4555666675 36777777765432211 11111 1123466678999999999999999999999999999999998
Q ss_pred HHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhh
Q psy2242 119 TYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163 (246)
Q Consensus 119 i~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~ 163 (246)
+... ..+. ...|+.|++..+.. ..+-.+..+.+..+++
T Consensus 320 L~~~--~~~~----~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 320 LEGC--DGDA----EAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred HHhc--cccH----HHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 7542 1222 24789999987753 3333455666666665
No 33
>PRK08244 hypothetical protein; Provisional
Probab=98.11 E-value=5.4e-05 Score=72.94 Aligned_cols=61 Identities=15% Similarity=0.003 Sum_probs=51.4
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIK 144 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~ 144 (246)
++...++++|+||||-.++|+.++|+++||..+...|..+..+++ +... ...|+.|++.-+
T Consensus 267 ~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~-g~~~---~~lL~~Ye~eR~ 327 (493)
T PRK08244 267 ERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-GWAP---DWLLDSYHAERH 327 (493)
T ss_pred hhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHc-CCCC---chhhhhhHHHHH
Confidence 456678999999999999999999999999999999999998884 4332 357899998554
No 34
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.03 E-value=1.1e-05 Score=75.56 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=63.5
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++.+.++++||||||-.+.|..++|+.+||+++...|+.+.++..++ . ..+|..|++..+.. +.+-.+..|.+.
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~-~----~~al~~Y~~~R~~r-~~~~~~~s~~~~ 347 (390)
T TIGR02360 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEG-S----SAGIEGYSARALAR-VWKAERFSWWMT 347 (390)
T ss_pred ccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccC-h----HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999987765322 2 25799999987654 345567778888
Q ss_pred hhhhh
Q psy2242 160 PSFHS 164 (246)
Q Consensus 160 ~~~~~ 164 (246)
.++++
T Consensus 348 ~~~~~ 352 (390)
T TIGR02360 348 SLLHR 352 (390)
T ss_pred HHhcC
Confidence 88764
No 35
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.94 E-value=3.6e-05 Score=71.98 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++|+||||-.+.|+.++|+.+||..+...|+.+.+++..++ ... ...|+.|++.-+.. ..+=.+..+.
T Consensus 279 ~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~--~~~L~~Ye~~R~~~-~~~~~~~~~~ 355 (405)
T PRK05714 279 AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLAD--VRVLSRFERRRMPH-NLALMAAMEG 355 (405)
T ss_pred hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4577889999999999999999999999999999999999988775553 210 24789999876543 3343455666
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|+
T Consensus 356 ~~~~~~ 361 (405)
T PRK05714 356 FERLFQ 361 (405)
T ss_pred HHHHHC
Confidence 666665
No 36
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.86 E-value=0.00014 Score=67.50 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=57.4
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
.++.+.++++||||||-.+.|+.++|+.+||+.+...|+++. .+ ..|++|++.-+.. ...=+...+.+
T Consensus 267 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~-----~~------~~L~~Ye~~R~~~-~~~~~~~t~~l 334 (374)
T PRK06617 267 ANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVS-----NN------GTLQEYQKLRQED-NFIMYKLTDEL 334 (374)
T ss_pred ccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHc-----Cc------chHHHHHHHHhHH-HHHHHHHHHHH
Confidence 357888999999999999999999999999999999888751 11 3799999876543 23335566667
Q ss_pred hhhhhh
Q psy2242 159 RPSFHS 164 (246)
Q Consensus 159 ~~~~~~ 164 (246)
..+|.+
T Consensus 335 ~~~f~~ 340 (374)
T PRK06617 335 NNIFSN 340 (374)
T ss_pred HHHHcC
Confidence 777764
No 37
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=97.82 E-value=9.1e-05 Score=67.00 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=64.6
Q ss_pred CeEEEEEeCCCCCeEEEEEEEccCCCCCCC---CHHHHHHHHhcCCCcccc--------ccCCeEeeecceeeecCCCcc
Q psy2242 10 GGSFLYHLNEPSPLVAVGFVVGLDYTNPYL---SPFKEFQRFKTHPAVRPV--------FEGGKRIAYGARALNEGGLQA 78 (246)
Q Consensus 10 GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~---~p~~~l~~~k~hP~i~~~--------L~gg~~i~y~a~~ip~gg~~~ 78 (246)
+--.+|... .+.+.|-+-+..+ +-|.. +..++++..- .|.+-+. ++.+ ..+..|..-+.+
T Consensus 54 ~pil~YqI~--~~etR~Lvdvp~~-k~P~~~~g~l~~yl~~~v-~P~LP~~lr~~f~~al~~~-----rirsMPn~~lp~ 124 (276)
T PF08491_consen 54 GPILLYQIS--SNETRVLVDVPGP-KLPSVSNGELKEYLREVV-APQLPEELRPSFEKALEDG-----RIRSMPNSFLPA 124 (276)
T ss_pred CcEEEEEcC--CCceEEEEEeCCC-ccCCccchHHHHHHHHHH-HhhchHHHHHHHHHHhccC-----CcceecccccCC
Confidence 344667777 6666666654433 12322 2233333221 1333222 3333 345666643332
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
. ....+|++++|||+.+.+|+++.||..|+....+.++.+...
T Consensus 125 ~-~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 125 S-PNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred C-CCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 2 456699999999999999999999999999999999987664
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.80 E-value=7.6e-05 Score=69.46 Aligned_cols=82 Identities=9% Similarity=-0.018 Sum_probs=60.3
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++||||||-.+.|+.++|+.+||+.+...|+.+.++++.+. .. +...|++|++.-+.. ....+.....
T Consensus 276 ~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~--~~~~l~~y~~~R~~~-~~~~~~~~~~ 352 (392)
T PRK08773 276 VQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWA--APHRLQRWARTRRSD-NTVAAYGFDA 352 (392)
T ss_pred hhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3577889999999999999999999999999999999999998886542 21 124688999876543 1122333345
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+.++|.
T Consensus 353 l~~~f~ 358 (392)
T PRK08773 353 INRVFS 358 (392)
T ss_pred HHHHHc
Confidence 555555
No 39
>PRK08013 oxidoreductase; Provisional
Probab=97.79 E-value=0.00012 Score=68.73 Aligned_cols=82 Identities=15% Similarity=0.025 Sum_probs=62.0
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++||||||-.+.|+.++|+.+||..+...|+.+..++..+. ... ...|+.|++.-+ .....-+...+.
T Consensus 276 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~--~~~L~~Y~~~R~-~~~~~~~~~~~~ 352 (400)
T PRK08013 276 ARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQ--HLYLRRYERSRK-HSAALMLAGMQG 352 (400)
T ss_pred cccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999888775543 210 125899998743 334443444566
Q ss_pred hhhhhh
Q psy2242 158 CRPSFH 163 (246)
Q Consensus 158 ~~~~~~ 163 (246)
+..+|.
T Consensus 353 ~~~l~~ 358 (400)
T PRK08013 353 FRDLFA 358 (400)
T ss_pred HHHHHc
Confidence 666665
No 40
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.74 E-value=0.00046 Score=64.52 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=66.9
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
.+...++++||||||=.+.|+.++|+++||+.+...|+++.++...++.. ..|..|++.-+.. ..+=....+.+.
T Consensus 273 ~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~----~~L~~Y~~~R~~~-~~~~~~~s~~~~ 347 (387)
T COG0654 273 ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADA----AALAAYEARRRPR-AEAIQKLSRALG 347 (387)
T ss_pred hheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccH----HHHHHHHHhhhhH-HHHHHHHHHHHh
Confidence 36777999999999999999999999999999999999999988733211 5799999887643 334345555556
Q ss_pred hhhhhccccHHHHHHHHH
Q psy2242 160 PSFHSKLGLWGGLAYSGA 177 (246)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (246)
..|.+. .....++.+..
T Consensus 348 ~~~~~~-~~~~~~~r~~~ 364 (387)
T COG0654 348 RLFSAD-GPFARFLRNLG 364 (387)
T ss_pred hhhccC-CcHHHHHHHHH
Confidence 666532 23344444433
No 41
>PRK06996 hypothetical protein; Provisional
Probab=97.71 E-value=0.00028 Score=66.09 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=58.2
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
.++.+.++++||||||-.+.|+.++|+.+||..+...|+.+.. .++. ...|..|++.-+.. ...=++..+.+
T Consensus 285 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~---~~~~----~~~L~~Y~~~R~~~-~~~~~~~s~~l 356 (398)
T PRK06996 285 ARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD---HGAT----PLALATFAARRALD-RRVTIGATDLL 356 (398)
T ss_pred ccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh---cCCc----HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3467789999999999999999999999999999999998854 2332 25699999876432 22224556666
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
..+|+
T Consensus 357 ~~~~~ 361 (398)
T PRK06996 357 PRLFT 361 (398)
T ss_pred HHHHc
Confidence 66665
No 42
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.67 E-value=0.00015 Score=68.00 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=60.9
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++.+.++++|+||||-.+.|+.++|+.+||..+...|+.+..+++.+... .....|+.|++.-+ ....+-+...+.+.
T Consensus 277 ~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~-~~~~~L~~Y~~~R~-~~~~~~~~~~~~l~ 354 (405)
T PRK08850 277 RDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDI-GLKRNLRGYERWRK-AEAAKMIAAMQGFR 354 (405)
T ss_pred cccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999998877544310 00246899995443 33434345555666
Q ss_pred hhhh
Q psy2242 160 PSFH 163 (246)
Q Consensus 160 ~~~~ 163 (246)
.+|.
T Consensus 355 ~~~~ 358 (405)
T PRK08850 355 DLFS 358 (405)
T ss_pred HHHC
Confidence 6665
No 43
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.59 E-value=0.00024 Score=67.53 Aligned_cols=83 Identities=16% Similarity=0.004 Sum_probs=63.3
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHHHhhchHHHHHHHh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG-DEVSTGLEPKSYEDKIKSSWIYKELKEVRN 157 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd-~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~ 157 (246)
.++.+.++++|+||||-.+.|+.++|+++||+.+...|+.+.++++.+. ... ...|+.|++.-+.. ...=+...+.
T Consensus 327 ~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~--~~~L~~Y~~~R~~~-~~~v~~~t~~ 403 (437)
T TIGR01989 327 ADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGS--ISSLKPYERERYAK-NVVLLGLVDK 403 (437)
T ss_pred hhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4577889999999999999999999999999999999999998886542 110 14688999876542 2333455666
Q ss_pred hhhhhhh
Q psy2242 158 CRPSFHS 164 (246)
Q Consensus 158 ~~~~~~~ 164 (246)
+..+|.+
T Consensus 404 l~~l~~~ 410 (437)
T TIGR01989 404 LHKLYAT 410 (437)
T ss_pred HHHHHcC
Confidence 6667764
No 44
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.52 E-value=0.0012 Score=64.44 Aligned_cols=79 Identities=11% Similarity=0.011 Sum_probs=61.8
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++...++++|+||||-.+.|+.++|+..||..+...|..+...++ +... ...|..|++..+.. ..+-++..+.+.
T Consensus 281 ~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~-g~~~---~~~L~~Ye~eR~p~-~~~~~~~s~~~~ 355 (538)
T PRK06183 281 DRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLR-GRAG---DALLDTYEQERRPH-ARAMIDLAVRLG 355 (538)
T ss_pred hhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 456678999999999999999999999999999999998876664 4332 35799999988753 444456666666
Q ss_pred hhhh
Q psy2242 160 PSFH 163 (246)
Q Consensus 160 ~~~~ 163 (246)
.++.
T Consensus 356 ~~~~ 359 (538)
T PRK06183 356 RVIC 359 (538)
T ss_pred hhcc
Confidence 6664
No 45
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.51 E-value=0.00067 Score=63.75 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=73.6
Q ss_pred HHHHHHHHhc-CCCccccccCCeEeeecceeeecCCCccCCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHH
Q psy2242 41 PFKEFQRFKT-HPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEAT 119 (246)
Q Consensus 41 p~~~l~~~k~-hP~i~~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 119 (246)
..++++.|.. +|.++++++.-.... ...+- ....+|+.+.++++|+||||=.+.|..++|...||..+...|+.+
T Consensus 259 ~~~l~~~~~~~~~~v~~~~~~~~~~~--~~~~~--~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L 334 (414)
T TIGR03219 259 QREMLDAFAGWGDAARALLECIPAPT--LWALH--DLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLL 334 (414)
T ss_pred HHHHHHHhcCCCHHHHHHHHhCCCCC--ceeee--ecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHH
Confidence 3445555542 355666554322111 01111 112256777899999999999999999999999999999999987
Q ss_pred HHHHHh-CCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhh
Q psy2242 120 YEALAE-AGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFH 163 (246)
Q Consensus 120 ~~al~~-gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~ 163 (246)
...... .+. ..+|+.|++..+.. ..+-.+.+|.+..+++
T Consensus 335 ~~~~~~~~~~----~~al~~Ye~~R~~r-~~~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 335 GDTELEAGDL----PALLEAYDDVRRPR-ACRVQRTSREAGELYE 374 (414)
T ss_pred HhhccCcchH----HHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 654321 122 25789999987753 4444566676666654
No 46
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.49 E-value=0.00049 Score=64.45 Aligned_cols=107 Identities=18% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCCeEEEEEeCCCCCeEEEEEEEccCCCC-CCCCHHHHHHHHhcCCCccccccCCeEeeecceeeec---CCCccCCccc
Q psy2242 8 TYGGSFLYHLNEPSPLVAVGFVVGLDYTN-PYLSPFKEFQRFKTHPAVRPVFEGGKRIAYGARALNE---GGLQAIPRLT 83 (246)
Q Consensus 8 ~~GgGwiy~~~l~~~~vsVGlv~~l~~~~-~~~~p~~~l~~~k~hP~i~~~L~gg~~i~y~a~~ip~---gg~~~~pkl~ 83 (246)
.-|.-|+|.+++.++++=|..- .+.. +.+++..+-++++.... +.-+...+.++.....+|. +-+.. +...
T Consensus 175 ~~g~~F~Y~lP~~~~~~lvE~T---~~s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~-~~~~ 249 (370)
T TIGR01789 175 LAGYRFVYVLPLGSHDLLIEDT---YYADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSA-YQDE 249 (370)
T ss_pred CCCceEEEECcCCCCeEEEEEE---eccCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCccc-cccc
Confidence 4578899999998999888642 2223 55565555444432110 0011223443333346775 21221 1123
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEAT 119 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 119 (246)
.++++++|||||++.|.+|.|+..|++-+...|+++
T Consensus 250 ~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~ 285 (370)
T TIGR01789 250 VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQP 285 (370)
T ss_pred CCceeeeecccccccccccccHHHHHHHHHHHHhcc
Confidence 677999999999999999999999997666555443
No 47
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.44 E-value=0.00097 Score=62.32 Aligned_cols=106 Identities=19% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCCCeEEEEEEEccCCCCCCCCHHHHHHHHhcCCCcc-ccccCCeEeeecceeeec--CCCccCCccccC
Q psy2242 9 YGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVR-PVFEGGKRIAYGARALNE--GGLQAIPRLTFP 85 (246)
Q Consensus 9 ~GgGwiy~~~l~~~~vsVGlv~~l~~~~~~~~p~~~l~~~k~hP~i~-~~L~gg~~i~y~a~~ip~--gg~~~~pkl~~~ 85 (246)
.|-.|+|.+++.++++-|...+..+ ++.++..++-+++++. ++ .-++..+.++--...||. ++. ++...+
T Consensus 182 ~~~~F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~~--l~~~g~~~~~i~~~E~G~IPm~~~~~---~~~~~~ 254 (374)
T PF05834_consen 182 DGPSFLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRRY--LERLGIDDYEILEEERGVIPMTTGGF---PPRFGQ 254 (374)
T ss_pred CCceEEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHHH--HHHcCCCceeEEEeecceeecccCCC---ccccCC
Confidence 5778999999889999998654332 2323333333333211 11 112233454444556777 443 355677
Q ss_pred CEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 86 GGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 86 G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
+++.+|+|||+++|.+|=++ ......|++|++++.+
T Consensus 255 ~v~~iG~agG~v~PsTGYs~----~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 255 RVIRIGTAGGMVKPSTGYSF----ARIQRQADAIADALAK 290 (374)
T ss_pred CeeeEEccccCCCCcccHHH----HHHHHHHHHHHHHHhh
Confidence 89999999999999997554 4455555566666654
No 48
>PRK05868 hypothetical protein; Validated
Probab=97.39 E-value=0.0002 Score=66.72 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=57.8
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
+|+.+.++++||||||-.+.|+.++|+.+||..+...|+.+... ..+. ..+|+.|++.++- ++-+--+..+..
T Consensus 276 ~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~----~~al~~ye~~~~~-~~~~~q~~~~~~ 348 (372)
T PRK05868 276 MDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDY----QLGFANYHAEFHG-FVERNQWLVSDN 348 (372)
T ss_pred cCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCH----HHHHHHHHHHHhH-HHHHhhhhhhcc
Confidence 45777899999999999999999999999999999999887442 1233 2579999999874 333323335555
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
...|.
T Consensus 349 ~~~~~ 353 (372)
T PRK05868 349 IPGGA 353 (372)
T ss_pred CCccc
Confidence 55553
No 49
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=97.38 E-value=8.6e-05 Score=58.39 Aligned_cols=26 Identities=58% Similarity=1.147 Sum_probs=16.1
Q ss_pred ccHHHHHHHHH-HHHhcCCCCcccccC
Q psy2242 167 GLWGGLAYSGA-SIMMKGIEPWTFKWN 192 (246)
Q Consensus 167 ~~~~~~~~~~~-~~~~~g~~~~~~~~~ 192 (246)
|+|.||+++++ +++++|+.||||+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~ 27 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHK 27 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCC
Confidence 67899999999 668999999999976
No 50
>PRK06847 hypothetical protein; Provisional
Probab=97.32 E-value=0.0007 Score=62.29 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=55.9
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhh
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRP 160 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~ 160 (246)
+.+.++++||||||-.+.|..++|+..||.++...|+.+.+. .+. ...|+.|++.-+.. ...-.+..+.+..
T Consensus 278 ~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~---~~~----~~al~~Y~~~R~~r-~~~~~~~s~~~~~ 349 (375)
T PRK06847 278 PWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH---DSL----EAALQAYYARRWER-CRMVVEASARIGR 349 (375)
T ss_pred CccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC---CcH----HHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 466789999999999999999999999999999999887541 121 25789999877653 3343555666665
Q ss_pred hh
Q psy2242 161 SF 162 (246)
Q Consensus 161 ~~ 162 (246)
.+
T Consensus 350 ~~ 351 (375)
T PRK06847 350 IE 351 (375)
T ss_pred ee
Confidence 55
No 51
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.22 E-value=0.0013 Score=61.23 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=55.9
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhh
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNC 158 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~ 158 (246)
.++.+.++++|+||||-.+.|+.++|+.+||+.+...++.+.+ .+..+ .+.|+.|++.-+.. ...-....+.+
T Consensus 273 ~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~---~~~~~---~~~L~~Ye~~R~~~-~~~~~~~~~~~ 345 (384)
T PRK08849 273 AQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK---QGVLN---DASFARYERRRRPD-NLLMQTGMDLF 345 (384)
T ss_pred cchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh---cCCCc---HHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 4577889999999999999999999999999999887776532 22222 25789999876542 22223444555
Q ss_pred hhhhh
Q psy2242 159 RPSFH 163 (246)
Q Consensus 159 ~~~~~ 163 (246)
..+|+
T Consensus 346 ~~~~~ 350 (384)
T PRK08849 346 YKTFS 350 (384)
T ss_pred HHHhc
Confidence 55565
No 52
>PTZ00367 squalene epoxidase; Provisional
Probab=97.21 E-value=0.0027 Score=63.01 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=38.3
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
+.+.+|++||||||-...|+.++|+..||..+...|+.+...
T Consensus 333 ~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~ 374 (567)
T PTZ00367 333 FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGI 374 (567)
T ss_pred cCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhh
Confidence 457789999999999999999999999999999999988653
No 53
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.19 E-value=0.0051 Score=60.18 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=52.4
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
++...++++|+||||=...|..++|+.+||..+...|..+...++ +..+ ...|+.|++.-+.
T Consensus 294 ~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~-g~~~---~~lL~~Ye~eR~p 355 (547)
T PRK08132 294 DRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLR-GRAP---DSLLDSYASEREF 355 (547)
T ss_pred cccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHH
Confidence 466779999999999999999999999999999999998887775 4433 3678999987764
No 54
>PRK06834 hypothetical protein; Provisional
Probab=96.90 E-value=0.012 Score=57.11 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=51.9
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
.++...++++|+||||=...|+.++|++++|..+.-.|..+...++ +... ...|..|++.-+.
T Consensus 259 a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~-g~~~---~~lLd~Ye~eRrp 321 (488)
T PRK06834 259 AASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVK-GTSP---ESLLDTYHAERHP 321 (488)
T ss_pred cccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999988888777775 3322 3578999988654
No 55
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.86 E-value=0.014 Score=54.68 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=45.4
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
+.++++||||||-.+.|..++|+..||..+...|+.+.. .+. ...|+.|++.-+.
T Consensus 290 ~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~----~~aL~~Ye~~R~~ 344 (400)
T PRK06475 290 GPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQ----SAGLKRFDSVRKE 344 (400)
T ss_pred ecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHH
Confidence 458999999999999999999999999999999887632 233 2478999987664
No 56
>PLN02985 squalene monooxygenase
Probab=96.73 E-value=0.023 Score=55.67 Aligned_cols=61 Identities=11% Similarity=-0.000 Sum_probs=43.9
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIK 144 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~ 144 (246)
..+|++|+||||-+..|++++|+..|+..+..-|+.+...-.-++.. ...+.|+.|++.-+
T Consensus 324 ~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~-~~~~aL~~y~~~Rk 384 (514)
T PLN02985 324 DKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAN-KVSEVIKSFYDIRK 384 (514)
T ss_pred CCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchh-HHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999888875420001100 00145777877554
No 57
>PRK06184 hypothetical protein; Provisional
Probab=96.71 E-value=0.0038 Score=60.38 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=51.3
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
++....+++|+||||=.+.|..++|+.+||..+...|..+..+++ +.. ...|+.|++.-+.
T Consensus 276 ~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~-g~~----~~lL~~Ye~eR~p 336 (502)
T PRK06184 276 DRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLA-GAP----EALLDTYEEERRP 336 (502)
T ss_pred hhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHc-CCC----HHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999998887775 332 2568999988765
No 58
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.54 E-value=0.001 Score=38.10 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.8
Q ss_pred eEEecccccccccccccCCCCCce
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
.+||.+.|++|+.|...||++.|+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 368999999999999999999885
No 59
>PRK07236 hypothetical protein; Provisional
Probab=96.53 E-value=0.0053 Score=57.11 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=55.5
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhh
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~ 159 (246)
++...++++|+||||=.+.|..++|...||..+..-|+.+.... .+. ...|+.|++..+.. ..+-.+..|.+.
T Consensus 300 ~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~----~~al~~Ye~~R~~r-~~~~~~~s~~~~ 372 (386)
T PRK07236 300 PRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDI----DAALAAWEAERLAV-GAAIVARGRRLG 372 (386)
T ss_pred cccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cch----HHHHHHHHHHhhHH-HHHHHHHHHHHH
Confidence 56678999999999999999999999999999999988876531 122 25788999887653 233234444444
Q ss_pred hhh
Q psy2242 160 PSF 162 (246)
Q Consensus 160 ~~~ 162 (246)
..+
T Consensus 373 ~~~ 375 (386)
T PRK07236 373 ARL 375 (386)
T ss_pred HHH
Confidence 433
No 60
>PRK06126 hypothetical protein; Provisional
Probab=96.48 E-value=0.0036 Score=61.12 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=52.1
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
.++...++++|+||||=.+.|+.++|+.+||..+...|..+...++ +... ...|+.|++.-+.
T Consensus 297 a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~-~~~~---~~lL~~Y~~eR~p 359 (545)
T PRK06126 297 ADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLN-GWAG---PALLDSYEAERRP 359 (545)
T ss_pred hhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHc-CCCc---HHHHhhhHHHhhH
Confidence 3467789999999999999999999999999999999999887764 3222 2578999987654
No 61
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.03 E-value=0.0022 Score=36.14 Aligned_cols=20 Identities=30% Similarity=0.894 Sum_probs=18.3
Q ss_pred ceEEecccccccccccccCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDP 226 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p 226 (246)
.+.||.+.|+.|++|.+.||
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACP 21 (22)
T ss_pred ceEEccccccCchhHHHhhC
Confidence 36899999999999999997
No 62
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.81 E-value=0.0021 Score=37.00 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.9
Q ss_pred eEEecccccccccccccCCCCCc
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
.+||.++|+.|+.|...||.+.|
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 57999999999999999998765
No 63
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.67 E-value=0.3 Score=49.17 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=56.3
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHH-HHHHHhhhhhh
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKE-LKEVRNCRPSF 162 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~e-l~~~r~~~~~~ 162 (246)
.++++|+||||=...|..++|+.++|..+.-.|..+...++ +... ...|..|++.-+.. .++ +...+.+..+|
T Consensus 339 ~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~-g~a~---~~lL~tYe~ERrp~--a~~li~~~~~~~~l~ 412 (634)
T PRK08294 339 LPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLS-GRSP---PELLHTYSAERQAI--AQELIDFDREWSTMM 412 (634)
T ss_pred cCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999988888877775 3322 35789999876642 333 44455555555
Q ss_pred h
Q psy2242 163 H 163 (246)
Q Consensus 163 ~ 163 (246)
.
T Consensus 413 ~ 413 (634)
T PRK08294 413 A 413 (634)
T ss_pred c
Confidence 4
No 64
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.41 E-value=0.027 Score=55.51 Aligned_cols=40 Identities=20% Similarity=0.050 Sum_probs=31.9
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA 126 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g 126 (246)
...+|++++||++.- | .-+..|+..|+.||++|.+.|...
T Consensus 407 ts~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 407 TGRPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345899999999852 1 346789999999999999999643
No 65
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.06 E-value=0.013 Score=30.89 Aligned_cols=16 Identities=44% Similarity=0.848 Sum_probs=14.0
Q ss_pred ccccccccccccCCCC
Q psy2242 213 QNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 213 ~nc~~c~~c~i~~p~~ 228 (246)
.+|++|++|...||.+
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 6899999999999974
No 66
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.46 E-value=0.057 Score=55.41 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=55.1
Q ss_pred CccccCC----EEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHH
Q psy2242 80 PRLTFPG----GCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEV 155 (246)
Q Consensus 80 pkl~~~G----~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~ 155 (246)
++.+..+ ++|+||||-.+.|..++|..+||..+...|+++.... .+. ...|+.|++..+.. ..+=.+..
T Consensus 260 ~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~--~~~----~~al~~ye~~R~~r-~~~~~~~s 332 (765)
T PRK08255 260 ERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP--GDL----PAALAAYEEERRVE-VLRIQNAA 332 (765)
T ss_pred CCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc--ccH----HHHHHHHHHHHHHH-HHHHHHHH
Confidence 4556666 9999999999999999999999999999999986531 122 25789999887643 22223444
Q ss_pred Hhhhhhhh
Q psy2242 156 RNCRPSFH 163 (246)
Q Consensus 156 r~~~~~~~ 163 (246)
+....+|.
T Consensus 333 ~~~~~~~~ 340 (765)
T PRK08255 333 RNSTEWFE 340 (765)
T ss_pred HHhCceee
Confidence 54444443
No 67
>PRK07190 hypothetical protein; Provisional
Probab=94.38 E-value=0.069 Score=51.92 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=50.5
Q ss_pred Cccc-cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q psy2242 80 PRLT-FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKS 145 (246)
Q Consensus 80 pkl~-~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~ 145 (246)
.+.. ..+++|+||||=...|..++|++++|..+.-.|..+...++ +... ...|..|++.-+.
T Consensus 269 ~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~-g~a~---~~lLdtY~~eR~p 331 (487)
T PRK07190 269 EHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIH-HGAS---PELLQSYEAERKP 331 (487)
T ss_pred hhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHH
Confidence 3553 58999999999998999999999999999999998887775 3322 2578999987654
No 68
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.37 E-value=0.1 Score=52.82 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=50.0
Q ss_pred CccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCC---CCCCCchHHHHHHHHH
Q psy2242 80 PRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDE---VSTGLEPKSYEDKIKS 145 (246)
Q Consensus 80 pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s---~~~~~~L~~Y~~~~~~ 145 (246)
++.+.++++|+||||=.+-|..++|..+||..+..-|+.+.+++...... .....+|+.|++..+.
T Consensus 362 ~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~ 430 (668)
T PLN02927 362 FTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRL 430 (668)
T ss_pred CccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999988776321000 0002468899887654
No 69
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=92.27 E-value=0.093 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=25.3
Q ss_pred cceEEecccccccccccccCCCCCceeeCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
..+.||.+.|+.|+.|...||+..|+|..-.|
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CeEEechhhccCchhhhhhhccCcceeecccc
Confidence 36799999999999999999999999987655
No 70
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=91.81 E-value=0.11 Score=36.22 Aligned_cols=26 Identities=27% Similarity=0.666 Sum_probs=18.1
Q ss_pred cceEEecccccccccccccCCC-CCce
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPT-QNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~-~~i~ 231 (246)
.++.++..+|+.|+.|...||. +.|+
T Consensus 32 ~~~~v~~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 32 KKVPVNPDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp TSSECE-TT--S-SCCCCCSSSTTSEE
T ss_pred eeEEeccccCcCcCcccccCCCccCCC
Confidence 4667888999999999999995 8775
No 71
>KOG2614|consensus
Probab=91.38 E-value=0.41 Score=45.76 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=40.1
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+....+++|+||||=-.-|..++|+..|+.-+.+-|+.+.++..
T Consensus 284 ~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 284 KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhcc
Confidence 44455999999999999999999999999999999999999885
No 72
>COG1146 Ferredoxin [Energy production and conversion]
Probab=90.87 E-value=0.23 Score=35.07 Aligned_cols=42 Identities=21% Similarity=0.495 Sum_probs=31.3
Q ss_pred ceEEEEeCCCCCccceEEecccccccccccccCCCCCceeeCCC
Q psy2242 193 SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 193 ~vy~~~~~~~~~~~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
+|+.+.+++. +..+.+|...|+.|+.|...||.+.|......
T Consensus 23 ~~~~~~~~~~--~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 23 GVFDLGEDEG--GKPVVARPEECIDCGLCELACPVGAIKVDILR 64 (68)
T ss_pred hhEEeccccC--cceeEeccccCccchhhhhhCCcceEEEeccc
Confidence 5555544321 35688999999999999999999988765543
No 73
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=89.90 E-value=0.12 Score=43.85 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.1
Q ss_pred cceEEecccccccccccccCCCCCcee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
+..+||+.+||.|+-|.-.||+..|.=
T Consensus 88 ~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 88 KRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccceeccccccccCchhhhCchhhhcC
Confidence 577899999999999999999988753
No 74
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=89.64 E-value=0.17 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=5.6
Q ss_pred eEEecccccccccccccCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~ 227 (246)
+.||.+.|+.|+.|.-.||.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 45566666666666666665
No 75
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=88.76 E-value=0.22 Score=42.00 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=26.0
Q ss_pred cceEEecccccccccccccCCCCCceeeC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..+++|.+.|+-||+|-+.||...|+-+.
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CceEEchhhccCcchhhhcCCcceEEEEe
Confidence 47899999999999999999999887654
No 76
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=88.34 E-value=0.19 Score=33.45 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=17.2
Q ss_pred cceEEecccccccccccccCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~ 228 (246)
.++.++.+.|++|+.|...||++
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPTG 51 (52)
T ss_dssp TTSEETGGG----SHHHHHTTTS
T ss_pred eEEEEechhCcCcChhhhhCcCc
Confidence 68899999999999999999975
No 77
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=88.16 E-value=0.26 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=15.0
Q ss_pred EEecccccccccccccCCCCCceee
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+||.+.|+.|+.|...||.+.|...
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i 26 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAI 26 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-E
T ss_pred EECcccccChhhHHhHcCccceeeE
Confidence 5899999999999999998554433
No 78
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=87.82 E-value=0.22 Score=46.57 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=27.5
Q ss_pred cceEEecccccccccccccCCCCCce------eeCCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNIN------WVVPEGG 238 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~------w~~p~gg 238 (246)
.++.||.++|++|+.|.-.||.+.|+ |++=-||
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG 245 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGG 245 (341)
T ss_pred CceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEcc
Confidence 57999999999999999999987765 4554555
No 79
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=87.18 E-value=0.15 Score=34.09 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=15.3
Q ss_pred ecccccccccccccCCCCCc
Q psy2242 211 NAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~~i 230 (246)
+.+.|++|+.|...||++.|
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 66799999999999999876
No 80
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=87.10 E-value=0.28 Score=35.27 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.4
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+..|+...|++|+.|...||.+.|.|.
T Consensus 18 ~~~~i~~~~C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 18 FKPVVDKEKCIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred eEEEEcCCcCcChhHHHhhcCccceEec
Confidence 3567899999999999999999988885
No 81
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=86.77 E-value=0.35 Score=37.04 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=20.0
Q ss_pred cceEEecccccccccccccCCCCCceeeC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..++|+..+|+.|+.|.-.||.+.|.++.
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhcccc
Confidence 45666777777777777777777666653
No 82
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=86.56 E-value=0.32 Score=38.22 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=22.8
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
++.++...|+.|+.|...||++.|+++.
T Consensus 67 ~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 67 KVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred ceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 5677888888888888888888888754
No 83
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=86.32 E-value=0.33 Score=41.37 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.1
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.||...|+.|+.|.-.||++.|+++
T Consensus 96 ~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 96 NYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred eeecCcccccCcCchhhhcCCCCeecc
Confidence 467888999999999999999888874
No 84
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=85.88 E-value=0.24 Score=39.96 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.7
Q ss_pred cceEEecccccccccccccCCCCCcee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
.+..+|...|++|+.|...||.+.|.-
T Consensus 52 ~~p~~d~~~Ci~C~~C~~~CP~~ai~~ 78 (133)
T PRK09625 52 EKPVHNNEICINCFNCWVYCPDAAILS 78 (133)
T ss_pred eeEEEehhHCcChhhHHHhCCHhheEe
Confidence 467789999999999999999887753
No 85
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=85.87 E-value=0.3 Score=36.18 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=25.3
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..+.||...|+.|+.|.-.||.+.|+..
T Consensus 14 ~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 14 FVTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eeEEECHhHCCCcchHHHHcChhhceee
Confidence 4577999999999999999999999876
No 86
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=85.56 E-value=0.39 Score=37.73 Aligned_cols=28 Identities=14% Similarity=0.548 Sum_probs=25.4
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.++.++.+.|++|+.|.-.||.+.|...
T Consensus 35 g~i~i~~~~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 35 GKILYDVDKCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred ceEEECcccCcCcccHHHHCCccceEcc
Confidence 5789999999999999999999888765
No 87
>CHL00065 psaC photosystem I subunit VII
Probab=85.47 E-value=0.32 Score=35.48 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=25.2
Q ss_pred EEecccccccccccccCCCCCceeeCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
.++.+.|+.|+.|...||.+.|+|++=.|
T Consensus 42 ~~~~~~C~~C~~C~~~CP~~Ai~~~~~~~ 70 (81)
T CHL00065 42 APRTEDCVGCKRCESACPTDFLSVRVYLG 70 (81)
T ss_pred cCCCCcCCChhhhhhhcCccccEEEEEec
Confidence 56778999999999999999999986544
No 88
>KOG3855|consensus
Probab=85.42 E-value=0.81 Score=44.03 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=50.4
Q ss_pred CCccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHH
Q psy2242 79 IPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDK 142 (246)
Q Consensus 79 ~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~ 142 (246)
....+.+|+.||||||=-+.|+.++|+.+...--+...++.-+|+..|--- .+...|+.|+..
T Consensus 364 a~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~Dl-gS~~~L~~y~~~ 426 (481)
T KOG3855|consen 364 ADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDL-GSVEHLEPYERE 426 (481)
T ss_pred HHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccc-cchhhhhHHHHH
Confidence 447888999999999999999999999999999999999999888766410 112356666654
No 89
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=84.71 E-value=0.52 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=22.3
Q ss_pred ceEEecccccccccccccCCCCCce
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
+-.++.++|++|+.|...||+..|.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAII 265 (312)
T ss_pred ceEECcccCcCcccccccCChhhhh
Confidence 5578999999999999999998874
No 90
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=84.65 E-value=0.34 Score=32.07 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=15.2
Q ss_pred cceEEecccccccccccccCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDP 226 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p 226 (246)
..+.++..+|+.|+.|...||
T Consensus 32 ~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 32 KKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp SSEEE-TTT--TTSHHHHH-T
T ss_pred CCeEeCcccccccChhhhhCc
Confidence 578889999999999998887
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=84.49 E-value=0.95 Score=39.70 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=29.0
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
..+++..+||+++. ..+-+..||..|+.||..|.+.
T Consensus 264 ~~~~vya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 264 SVPGVFAAGDVRDK----GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCCEEEeecccCc----chhhhhhhhhhHHHHHHHHHhh
Confidence 45889999999985 1244789999999999998753
No 92
>PRK06273 ferredoxin; Provisional
Probab=84.34 E-value=0.37 Score=40.50 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=24.7
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
....++...|++|+.|...||.+.|.+.
T Consensus 42 ~~~~id~~~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 42 LPKKVFEELCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred CCCeECchhCcChhHHHHhcCccceeee
Confidence 3567788999999999999999999876
No 93
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=84.06 E-value=0.79 Score=38.67 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=22.1
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..+.++...|+.|+.|...||++.|+++
T Consensus 66 ~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 66 LAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred ccceeccccCcCccchhhhcCcCceEcc
Confidence 3457888888888888888888888765
No 94
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=84.06 E-value=0.87 Score=38.66 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=22.9
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..+.++...|+.|+.|...||++.|+++
T Consensus 66 ~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 66 RTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred cceeeccCcCcCCCCcccccCcCeEEec
Confidence 4567888888899999888988888765
No 95
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=83.73 E-value=0.42 Score=35.24 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=21.9
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
+..++.+.|+.|+.|.-.||+..|.-
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred eEEeCccccCCCCCchhhCCHHHhhc
Confidence 45788899999999999999887665
No 96
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=83.41 E-value=0.37 Score=35.65 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.0
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+.+|...|+.|+.|.-.||++.|+-.
T Consensus 65 ~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 65 VVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred eecCCccCcChhhhhhhCCHhHEecC
Confidence 46899999999999999999988753
No 97
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=83.09 E-value=2.7 Score=40.94 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=52.3
Q ss_pred HHHHHHHH-hcCCCcc---ccccCCeEeeecceeeecCCCccCCccccCCEEEeccCccCCCCcccccchhHHHHHHHHH
Q psy2242 41 PFKEFQRF-KTHPAVR---PVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAA 116 (246)
Q Consensus 41 p~~~l~~~-k~hP~i~---~~L~gg~~i~y~a~~ip~gg~~~~pkl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAA 116 (246)
..+.+++| +.-|.++ .+|-+-+..-|+++..-.-- + .+.-.|+..+||-||+ ..||..|-..|.+||
T Consensus 406 iiE~le~ldk~ipG~as~dtlLygvE~k~ys~ri~~d~~-~---~t~i~gLy~aGdGAG~-----argI~~Aaa~Gi~~A 476 (486)
T COG2509 406 LIEALENLDKVIPGVASDDTLLYGVETKFYSVRIKVDED-L---STSIKGLYPAGDGAGL-----ARGIVSAAADGIKAA 476 (486)
T ss_pred HHHHHHHhhccCCCcccccceeeeeeeeeeeeeEeeccc-c---eeeecceEEccccccc-----cchhHHHhhhhHHHH
Confidence 34455666 3456654 36666666667655433211 2 5678999999999997 499999999999999
Q ss_pred HHHHHHH
Q psy2242 117 EATYEAL 123 (246)
Q Consensus 117 eai~~al 123 (246)
++|+.-.
T Consensus 477 ~~i~~k~ 483 (486)
T COG2509 477 EGIARKY 483 (486)
T ss_pred HHHHHHh
Confidence 9998643
No 98
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=82.77 E-value=0.77 Score=35.52 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.8
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
...++...|+.|+.|...||++.|+++
T Consensus 75 ~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 75 YPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred cEEECchhCCCcCchhhhcCcCcEEEe
Confidence 467888999999999999999998875
No 99
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=81.93 E-value=0.76 Score=35.91 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=23.8
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
.+.++...|+.|+.|...||.+.|+.+.
T Consensus 76 ~~~~~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 76 FYQINFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred cceECcccCCCCCchhhhCCCccccccc
Confidence 4668899999999999999999887643
No 100
>PLN00071 photosystem I subunit VII; Provisional
Probab=81.53 E-value=0.6 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.6
Q ss_pred EEecccccccccccccCCCCCceeeCCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWVVPEGG 238 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg 238 (246)
.++..+|+.|+.|...||.+.|++..-.|+
T Consensus 42 ~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 42 APRTEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred cCCCCcCcChhhHHhhcCCccceEeeeecc
Confidence 457789999999999999999998776554
No 101
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=81.47 E-value=0.76 Score=37.09 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=23.7
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
...|+..+|+.|+.|.-.||++.|.+..
T Consensus 83 ~~~i~~~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 83 LKGVDYSHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred eEEeCcCcCcChhHHHHHCCcCceEEEe
Confidence 4578999999999999999999865543
No 102
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=81.44 E-value=0.54 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.4
Q ss_pred eEEecccccccccccccCCCCCceeeCCCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWVVPEGG 238 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg 238 (246)
+.++...|+.|+.|...||++.|.+.+=.|+
T Consensus 40 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~ 70 (80)
T TIGR03048 40 SAPRTEDCVGCKRCESACPTDFLSVRVYLGA 70 (80)
T ss_pred CcCCCCcCcChhHHHHhcCcccCEEEEecCc
Confidence 4567789999999999999999999876553
No 103
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=81.12 E-value=0.43 Score=24.29 Aligned_cols=14 Identities=36% Similarity=0.728 Sum_probs=12.7
Q ss_pred ccccccccccCCCC
Q psy2242 215 CIHCKTCDIKDPTQ 228 (246)
Q Consensus 215 c~~c~~c~i~~p~~ 228 (246)
|.+|+.|...||++
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 88999999999975
No 104
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=81.07 E-value=0.86 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.4
Q ss_pred cceEEecccccccccccccCCCCCc
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
.++.++..+|++|+.|...||...|
T Consensus 55 G~i~~~~~kCi~Cg~C~~aCP~~ai 79 (183)
T TIGR00403 55 GRIHFEFDKCIACEVCVRVCPINLP 79 (183)
T ss_pred ceEEeCcccCcCcCChhhhCCCCcc
Confidence 4788999999999999999999865
No 105
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=81.01 E-value=0.81 Score=37.99 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=22.5
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.++...|+.|+.|...||++.|...
T Consensus 91 ~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 91 RYDINFGRCIFCGFCEEACPTDAIVET 117 (164)
T ss_pred eeecCCCcCcccCcchhhcCcCcceec
Confidence 356889999999999999999887653
No 106
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=80.78 E-value=0.89 Score=38.35 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=26.3
Q ss_pred cceEEecccccccccccccCCCCCceeeCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVP 235 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p 235 (246)
.+..++.+.|+.|+.|...||++.|.....
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 478999999999999999999998877653
No 107
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=80.43 E-value=1.1 Score=37.22 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=23.4
Q ss_pred ceEEecc-----cccccccccccCCCCCceeeCC
Q psy2242 207 RLQINAQ-----NCIHCKTCDIKDPTQNINWVVP 235 (246)
Q Consensus 207 ~~~i~~~-----nc~~c~~c~i~~p~~~i~w~~p 235 (246)
.+.++.. +|+.|+.|.-.||.+.|.....
T Consensus 47 ~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~ 80 (164)
T PRK05888 47 RHALRRDPNGEERCIACKLCAAICPADAITIEAA 80 (164)
T ss_pred EEeecCCCCCCccCCcccChHHHcCccccccccc
Confidence 4566666 9999999999999988876543
No 108
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=80.21 E-value=0.93 Score=34.42 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.4
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
|-+++..-|+.|+.|-+=||..+|.+.-
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~ 56 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEE 56 (91)
T ss_pred eeEEcccccccCceeEEECCchheeecc
Confidence 4578999999999999999999998763
No 109
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=80.21 E-value=2.4 Score=45.11 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=29.5
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
...+|+.++||++.. | ..+..|+..|+.||+.|...+
T Consensus 805 Ts~pgVFAaGD~a~G--p---~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 805 TSLTNVYMIGDVQRG--P---STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred cCCCCEEEEeccccC--c---hHHHHHHHHHHHHHHHHhhhc
Confidence 345899999999842 2 357899999999999998654
No 110
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=80.17 E-value=0.69 Score=43.70 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=15.7
Q ss_pred ecccccccccccccCCC
Q psy2242 211 NAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~ 227 (246)
++.+|++||-|--+||+
T Consensus 349 ~as~CieCgqCl~~CPq 365 (391)
T COG1453 349 KASDCIECGQCLEKCPQ 365 (391)
T ss_pred cccccchhhhhhhcCCC
Confidence 58999999999999994
No 111
>PRK07233 hypothetical protein; Provisional
Probab=79.33 E-value=2.4 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=29.6
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.+|+.++||. ....-+.+|+-|+.||+.||+.|...++
T Consensus 395 ~~~l~~aG~~---~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 395 IEGLYLAGMS---QIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cCCEEEeCCc---ccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 4899999992 1223345799999999999999987664
No 112
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=78.90 E-value=1.2 Score=36.66 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=27.6
Q ss_pred cceEEecccccccccccccCCCCCceeeCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
..+.|+...|+.|+.|...||++.|.|....+
T Consensus 88 ~~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~ 119 (161)
T TIGR02951 88 GLVLVDQDKCIGCRYCVWACPYGAPQYDPQQG 119 (161)
T ss_pred CcEEECHHhCCCchHHHhhCCCCCcEEcCCCC
Confidence 35789999999999999999999999975543
No 113
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=78.56 E-value=1.1 Score=40.98 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=26.5
Q ss_pred cceEEecccccccccccccCCCCCceeeCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVP 235 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p 235 (246)
..+.+|...|+.|+.|...||++.|+|...
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 367899999999999999999999988653
No 114
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=78.44 E-value=1 Score=34.71 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.7
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
...||...|..|+.|...||.+.|+++
T Consensus 75 ~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 75 YVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred cEEeCchhCcCcchhhhhcCcCcEEec
Confidence 467899999999999999999998875
No 115
>PRK06273 ferredoxin; Provisional
Probab=78.36 E-value=1 Score=37.78 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.3
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
.+.||...|+.|+.|.-.||.+.|..
T Consensus 85 ~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 85 IPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ceecccccCcCCCCcchhCCHhheec
Confidence 46899999999999999999998854
No 116
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=77.65 E-value=0.95 Score=40.39 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=14.3
Q ss_pred EEecccccccccccccCCCCCceee
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.++...|+.|+.|.-.||++.|+++
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EeccccccchhHHHHhCCccccccc
Confidence 4555556666666666666555543
No 117
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=77.52 E-value=1.1 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=18.4
Q ss_pred cccccccccccCCCCCceeeCCCCC
Q psy2242 214 NCIHCKTCDIKDPTQNINWVVPEGG 238 (246)
Q Consensus 214 nc~~c~~c~i~~p~~~i~w~~p~gg 238 (246)
+|+.|+.|.-.||.+.|.+..-.+.
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~ 25 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGK 25 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTC
T ss_pred CCCCcchHHHHCCccCeEccCcccc
Confidence 6999999999999999988765543
No 118
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=77.45 E-value=1.1 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=24.2
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
+++.+.+.|+.|+.|.-.||..-|.+..
T Consensus 2 ~~~~~~~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 2 HSVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cceecCCcCcCcchHHHHCCccceeeec
Confidence 4678899999999999999988887754
No 119
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.44 E-value=2.3 Score=39.77 Aligned_cols=38 Identities=21% Similarity=-0.126 Sum_probs=30.8
Q ss_pred cccCCEEEeccCccCCCCccccc-----chhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKG-----THNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 120 (246)
...+++.++||.|.+-+| +++- .++|+..|++||+.+.
T Consensus 265 ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 265 TCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred cCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 456999999999988777 5432 3789999999999875
No 120
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=77.32 E-value=1.3 Score=42.38 Aligned_cols=22 Identities=32% Similarity=0.786 Sum_probs=20.6
Q ss_pred cceEEecccccccccccccCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~ 227 (246)
+++.||..+|++|..|.-+||.
T Consensus 265 ~~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 265 KELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred ceEEEcchhcCcCccccccCcc
Confidence 3899999999999999999996
No 121
>PLN00071 photosystem I subunit VII; Provisional
Probab=77.29 E-value=1 Score=32.69 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEecccccccccccccCCCCCceee
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+++...|+.|+.|...||++.|...
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~~ 29 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceeee
Confidence 5677899999999999999888765
No 122
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=77.28 E-value=0.89 Score=37.98 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=21.9
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.+|...|+.|+.|.-.||++.|..+
T Consensus 93 ~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 93 NYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred cccCCCCcCcCccchHhhcCcCceecC
Confidence 466788889999999999998877653
No 123
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=77.11 E-value=0.55 Score=31.15 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=17.2
Q ss_pred cccccccccccCCCCCceeeCCCC
Q psy2242 214 NCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 214 nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
+|+.|+.|...||++.|.+.....
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~ 24 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEEN 24 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT
T ss_pred CCCCcCchHHhcCccccCcccccc
Confidence 599999999999999999987643
No 124
>CHL00065 psaC photosystem I subunit VII
Probab=77.03 E-value=0.71 Score=33.61 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEecccccccccccccCCCCCceeeC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
.++..+|++|+.|...||.+.|++..
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCccccCCChhHHHHHCCccchhhee
Confidence 34577999999999999998887753
No 125
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=76.60 E-value=1.3 Score=33.86 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=22.8
Q ss_pred ceEEecccccccccccccCCCCCce
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
.+.++...|+.|+.|...||++.|.
T Consensus 60 ~~~i~~~~C~~Cg~C~~~CP~~Ai~ 84 (101)
T TIGR00402 60 TVEFDNAECDFCGKCAEACPTNAFH 84 (101)
T ss_pred eeEecCccCcCccChhhHCCccccC
Confidence 5678999999999999999999886
No 126
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=76.57 E-value=1.1 Score=39.96 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=26.1
Q ss_pred ceEEecccccccccccccCCCCCceeeCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVP 235 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p 235 (246)
.+.||...|+.|+.|...||++.|.+...
T Consensus 124 ~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 124 IVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred CEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 67899999999999999999999998643
No 127
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=76.49 E-value=3.6 Score=37.09 Aligned_cols=33 Identities=30% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+|+.++||...-. ...||.-|+.||+.||+.|+
T Consensus 418 ~~l~~aG~~~~~~---~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPG---YPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSS---STTSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCC---CCCcHHHHHHHHHHHHHHhC
Confidence 6999999976533 33699999999999999874
No 128
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=76.45 E-value=3.8 Score=37.54 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=33.6
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..+++.++||++.+-+....+=...|+..|+.||+.|.+.+.
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 468999999999876543333346799999999999998884
No 129
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=76.14 E-value=1.1 Score=41.18 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.2
Q ss_pred cceEEecccccccccccccCCCCCce
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
.++.++.+.|+.|+.|.-.||++.|.
T Consensus 194 ~~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 194 YKVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred CeEEeCCCcCcCcchhhhhCCHhhcc
Confidence 36889999999999999999998765
No 130
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=76.02 E-value=1.3 Score=34.23 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.8
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
....++..+|+.|+.|...||...|.+.
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheEec
Confidence 4677899999999999999999888775
No 131
>KOG3256|consensus
Probab=75.88 E-value=0.71 Score=39.05 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=26.6
Q ss_pred cceEEecccccccccccccCCCCCc--eeeCCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNI--NWVVPEGG 238 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i--~w~~p~gg 238 (246)
.++....++||-||.|...||-|.| +|..-+-|
T Consensus 104 rRyp~geerCIACklCeavCPaqaitieae~r~dg 138 (212)
T KOG3256|consen 104 RRYPSGEERCIACKLCEAVCPAQAITIEAEERTDG 138 (212)
T ss_pred hcCCCcchhhhhHHHHHHhCCcccceeeceecCCc
Confidence 4677788999999999999999984 57655444
No 132
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=75.83 E-value=1.5 Score=33.57 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=23.9
Q ss_pred eEEecccccccccccccCCCCCceeeC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..||...|+.|+.|...||++.|++.-
T Consensus 48 ~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 48 KVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred eEeCCccCCCcCcchhhCChhhEEEec
Confidence 468889999999999999999998754
No 133
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=75.53 E-value=1.1 Score=42.77 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEecccccccccccccCCCCCceeeCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWVVP 235 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~~p 235 (246)
.|+...|++|++|.-.||++.|+++.+
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeChHhCcChHHHHhhCCccceEEeCC
Confidence 467777888888888888877777643
No 134
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=75.50 E-value=1.3 Score=34.55 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=22.1
Q ss_pred ceEEec-----ccccccccccccCCCCCceeeC
Q psy2242 207 RLQINA-----QNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~-----~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
++.++. .+|++|+.|...||...|....
T Consensus 32 ~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~ 64 (122)
T TIGR01971 32 RIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVP 64 (122)
T ss_pred eEeeccCCCCcCcCcCcchhhhhcCHhHeeeee
Confidence 445555 9999999999999988776543
No 135
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=75.49 E-value=1.3 Score=36.87 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.5
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..++.++|+.|+.|...||++.|+++
T Consensus 138 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 138 HTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEeecccccChhHHHHhcCcCceEee
Confidence 46778888888888888888888876
No 136
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=75.32 E-value=1 Score=38.16 Aligned_cols=27 Identities=19% Similarity=0.555 Sum_probs=23.7
Q ss_pred cceEEecccccccccccccCCCCCcee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
.+..++.++|+.|++|.-.||++.|.-
T Consensus 31 G~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~ 57 (181)
T PRK08222 31 GKPDLMPSQCIACGACTCACPANALTI 57 (181)
T ss_pred CceEeChhhCcchhHHHHhCCccceEc
Confidence 367899999999999999999988753
No 137
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=74.70 E-value=1.3 Score=41.13 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=26.0
Q ss_pred ceEEecccccccccccccCCCCCceeeCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
.+.||...|+.|+.|...||++.|.+..-+
T Consensus 156 iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~ 185 (321)
T TIGR03478 156 IVLVDQERCKGYRYCVEACPYKKVYFNPQS 185 (321)
T ss_pred eEEECHHHCcchHHHHHhCCCCCcEecCCC
Confidence 567999999999999999999998876543
No 138
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=73.96 E-value=1.8 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.7
Q ss_pred cceEEecccccccccccccCCCCCceeeCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
....|+...|+.|+.|.-.||.+.|++..-.
T Consensus 56 ~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 56 PEVVIDPDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred ceEEEccccCccccchHhhCCcCCeehhhcc
Confidence 5788999999999999999999998775443
No 139
>PRK07118 ferredoxin; Validated
Probab=73.26 E-value=2.3 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.1
Q ss_pred ceEEecccccccccccccCCCCCceeeCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPEGG 238 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg 238 (246)
..+||++.|+.|+.|..+||++.|+|.-.+..
T Consensus 236 ~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~~~ 267 (280)
T PRK07118 236 LAVIDQEKCTSCGKCVEKCPTKAIRILNKPPK 267 (280)
T ss_pred cEEEcCCcCCCHHHHHHhCCccccEeeccccc
Confidence 56789999999999999999999999865543
No 140
>PRK09898 hypothetical protein; Provisional
Probab=73.00 E-value=2.5 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=24.0
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.++..+|+.|+.|...||++.|...
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEec
Confidence 578999999999999999999988754
No 141
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=72.93 E-value=2.1 Score=30.61 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.4
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
...++...|.-|+.|...||++.|+-+
T Consensus 49 ~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 49 FVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred cEEecCccCcCccchhhhCCccccEec
Confidence 567888999999999999999988643
No 142
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=72.25 E-value=2.1 Score=37.50 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=24.3
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
.+.||.+.|+.|+.|...||++.|.+..
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCCcEecC
Confidence 5678999999999999999999887753
No 143
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=72.09 E-value=1.7 Score=39.06 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=20.4
Q ss_pred cceE-EecccccccccccccCCCCCce
Q psy2242 206 ERLQ-INAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~-i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
.++. +|.++|++|+.|.-.||.+.+.
T Consensus 200 ~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 200 IRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred cccccCCcccCcccCCcCCcCCCccee
Confidence 4566 7888999999999999976543
No 144
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=71.82 E-value=2 Score=35.87 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=21.3
Q ss_pred cceEEecccccccccccccCCCCCc
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
.++.++..+|+.|+.|.-.||...+
T Consensus 52 g~i~~~~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 52 GRIHFEFDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred CeEEeccccCCCcCcHHHhCCCCCc
Confidence 3566899999999999999998743
No 145
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=71.51 E-value=2.1 Score=38.44 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=20.7
Q ss_pred cceEEecccccccccccccCCCCCce
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
..+.++.+.|+.|+.|.-.||.+.|.
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred ceEEEccccCCCCchhhhhCcccccc
Confidence 46778888888888888888887765
No 146
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=71.22 E-value=1.6 Score=39.89 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=22.7
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+.+|+..|..|+.|...||++.|+.+
T Consensus 284 ~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 284 IDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred ecCCcccCcCcCchhhhCCHhheEec
Confidence 45678899999999999999998875
No 147
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=71.09 E-value=1.4 Score=43.38 Aligned_cols=17 Identities=35% Similarity=0.878 Sum_probs=12.3
Q ss_pred ecccccccccccccCCC
Q psy2242 211 NAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~ 227 (246)
+..+|+|||.|-+.||.
T Consensus 402 ~l~dCIECg~Ca~vCPs 418 (529)
T COG4656 402 NLLDCIECGACAYVCPS 418 (529)
T ss_pred HhhhhhhhCcchhcCCC
Confidence 66777777777777774
No 148
>PRK13409 putative ATPase RIL; Provisional
Probab=70.99 E-value=2.3 Score=42.47 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.8
Q ss_pred cceEEecccccccccccccCCCCCcee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
++-.|+-+-|+-||-|.-|||++.|+=
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~~a~~i 68 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPFDAISI 68 (590)
T ss_pred CCceeeHhhccccccccccCCcceEEE
Confidence 578999999999999999999999874
No 149
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=70.70 E-value=4.9 Score=42.55 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=42.0
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELK 153 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~ 153 (246)
..-+|++++||++.-- .=+..||..|+.||++|...|.-. ...|.+.++.+|.+.|+.
T Consensus 590 Ts~pgVFAaGD~~~G~-----~~vv~Ai~eGr~AA~~I~~~L~~~---------~~~~~~~~~~~~~yt~~~ 647 (944)
T PRK12779 590 TSIKGVYSGGDAARGG-----STAIRAAGDGQAAAKEIVGEIPFT---------PAEIKDRVERAARYTELG 647 (944)
T ss_pred cCCCCEEEEEcCCCCh-----HHHHHHHHHHHHHHHHHHHHhccc---------ccchhhhcchHhhhhhcc
Confidence 4568999999998521 126889999999999999988521 234556666666677663
No 150
>PRK13984 putative oxidoreductase; Provisional
Probab=70.53 E-value=5.2 Score=39.77 Aligned_cols=37 Identities=19% Similarity=0.004 Sum_probs=30.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|++++||+++.. .+..|+..|+.||++|.+.|.
T Consensus 566 Ts~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 3468999999999743 256799999999999998884
No 151
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=70.47 E-value=6.8 Score=36.01 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=30.2
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..+++.++||+++- |. =++.|+..|..||+.|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~--~~---~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTG--PS---KIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccC--cc---hHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999863 21 368999999999999988774
No 152
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=70.06 E-value=1.4 Score=39.58 Aligned_cols=28 Identities=29% Similarity=0.695 Sum_probs=25.2
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+..++..+|+.|+.|...||++.|...
T Consensus 75 ~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 75 NRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred cceeechhhcCchhHhhccCcHhHHhhh
Confidence 4678999999999999999999998874
No 153
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=70.01 E-value=7.4 Score=36.87 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=33.1
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..+++.++||+|.+-++....=...|+..|..||+.|...+.
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 458999999999875432223346799999999999998885
No 154
>PRK02651 photosystem I subunit VII; Provisional
Probab=69.97 E-value=2 Score=31.02 Aligned_cols=23 Identities=26% Similarity=0.729 Sum_probs=10.9
Q ss_pred ecccccccccccccCCCCCceee
Q psy2242 211 NAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+.+.|+.|+.|.-.||.+.|..+
T Consensus 44 ~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 44 RTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred CCCcCCChhhhhhhcCCCceEEE
Confidence 33445555555555554444443
No 155
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=69.93 E-value=6.4 Score=37.93 Aligned_cols=38 Identities=21% Similarity=-0.030 Sum_probs=30.9
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
...+|++++||+++- + .-+..|+..|+.||..|.+.|.
T Consensus 428 Ts~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999871 1 1367899999999999999885
No 156
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=69.30 E-value=1.8 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.3
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
...|+...|+.|+.|...||++.|+..-
T Consensus 39 ~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (132)
T TIGR02060 39 AYNIEPDMCWECYSCVKACPQGAIDVRG 66 (132)
T ss_pred eeecCchhCccHHHHHHhCCcCceEEEC
Confidence 3468999999999999999999988753
No 157
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=69.27 E-value=6.9 Score=37.99 Aligned_cols=40 Identities=23% Similarity=0.067 Sum_probs=31.8
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
+..-+|++++||+++-. .-+..|+..|+.||.+|.+.|..
T Consensus 441 ~Ts~~gVfAaGD~~~g~-----~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 441 STSIPGVFAAGDCRRGQ-----SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred eECCCCEEEeeccCCCc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34568999999998521 24677999999999999999963
No 158
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=69.09 E-value=7 Score=37.38 Aligned_cols=37 Identities=30% Similarity=0.161 Sum_probs=30.4
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..++++++||++. + .+-+..|+..|+.||+.|...|.
T Consensus 416 s~~~VfA~GD~~~---~--~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 416 SLPGVFAGGDIVT---G--AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCCEEEeCCcCC---C--chHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999984 1 13567899999999999999885
No 159
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=68.84 E-value=2.9 Score=35.12 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=24.5
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.+|...|+.|+.|...||++.|.+.
T Consensus 81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 81 FVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred eEEeChhhCCCcchhhhhCCccCeEee
Confidence 567899999999999999999999875
No 160
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.77 E-value=3.2 Score=41.83 Aligned_cols=29 Identities=34% Similarity=0.783 Sum_probs=25.6
Q ss_pred cceEEecccccccccccccCCCCCceeeC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..+.++.+.|+.|+.|...||++.|++..
T Consensus 78 ~~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 78 DSIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CeEEEecccccCcChhcccCCccCeeecc
Confidence 35789999999999999999999998864
No 161
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.60 E-value=4.2 Score=38.41 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=30.6
Q ss_pred cccCCEEEeccCccCCCCccccc-----chhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKG-----THNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 120 (246)
...+++..+||+++..++...+- .+.|++.|+.||+.+.
T Consensus 272 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 272 TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 45689999999999877655432 3689999999998775
No 162
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=68.57 E-value=2.1 Score=36.97 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=16.8
Q ss_pred cccccccccccccCCCCCc
Q psy2242 212 AQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~~i 230 (246)
-+.|++||||--.||..+.
T Consensus 38 l~~C~QCG~CT~sCPs~r~ 56 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRF 56 (195)
T ss_pred HhHhhccCcccCCCCCccc
Confidence 5669999999999998876
No 163
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=68.50 E-value=26 Score=33.92 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=28.5
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEAT 119 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 119 (246)
+...+|+.|+||--..-=| ..|.-|+.||+.||++|
T Consensus 438 ~t~~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 438 KTPISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCCCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 4556899999997765445 47777999999999976
No 164
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=68.35 E-value=12 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=33.4
Q ss_pred ccCCEEEeccCccC-C---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGF-L---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|.++|- + +-+.+.++..||.+|++||+.+.+..+
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 35899999988654 3 334578899999999999999987664
No 165
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=68.28 E-value=4.4 Score=36.14 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=21.9
Q ss_pred cceEEe-cccccccccccccCCCCCceee
Q psy2242 206 ERLQIN-AQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~-~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.++..+ .+.|.+|+.|.-.||.+.+...
T Consensus 193 ~~i~~~~~~~C~~C~~C~~vCP~~~vl~~ 221 (255)
T TIGR02163 193 IKIAASDREKCTNCMDCFNVCPEPQVLRM 221 (255)
T ss_pred eEEEeeccccCeEcCCccCcCCCCceeec
Confidence 455555 8899999999999998765443
No 166
>PRK02651 photosystem I subunit VII; Provisional
Probab=68.20 E-value=2.2 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.5
Q ss_pred EecccccccccccccCCCCCce
Q psy2242 210 INAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
...++|++|+.|...||.+-|.
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~ 27 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLE 27 (81)
T ss_pred cccccCCCcchHHHHCCcccee
Confidence 3479999999999999987654
No 167
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=67.85 E-value=1.8 Score=40.71 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=23.6
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..|+...|+.|+.|...||++.|.+.
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred cccCcccCcCccCHHHhCCCChhhhh
Confidence 56899999999999999999999875
No 168
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=67.85 E-value=3.1 Score=36.17 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.5
Q ss_pred ceEEecccccccccccccCCCCCceeeCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
-..+|...||-|+-|.+.||+.........
T Consensus 94 iV~vd~d~CIGC~yCi~ACPyga~~~~~~~ 123 (203)
T COG0437 94 IVLVDKDLCIGCGYCIAACPYGAPQFNPDK 123 (203)
T ss_pred EEEecCCcccCchHHHhhCCCCCceeCccc
Confidence 578999999999999999999987665533
No 169
>PRK12831 putative oxidoreductase; Provisional
Probab=67.35 E-value=7.7 Score=37.43 Aligned_cols=38 Identities=26% Similarity=0.063 Sum_probs=30.8
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|++.+||+++- | .-+..|+..|+.||.+|.+.|.
T Consensus 424 Ts~pgVfAaGD~~~g--~---~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTG--A---ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCC--c---hHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999752 1 2478999999999999999884
No 170
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=67.30 E-value=1.5 Score=38.98 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=21.8
Q ss_pred ceEEecccccccccccccCCCCCc
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
.+.||.+.|+.|++|.+.|+..|.
T Consensus 45 ~~~iD~~kCiGC~~C~~AC~~~n~ 68 (244)
T PRK14993 45 AMLIDLRRCIGCQSCTVSCTIENQ 68 (244)
T ss_pred EEEEEHHHCCCchHHHHHhhhhcc
Confidence 488999999999999999998764
No 171
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=67.09 E-value=1.4 Score=29.89 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=11.2
Q ss_pred EecccccccccccccCCCC
Q psy2242 210 INAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~ 228 (246)
.....|++|+.|...||.+
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 4788999999999999953
No 172
>PLN02487 zeta-carotene desaturase
Probab=66.96 E-value=25 Score=35.20 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=31.4
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+...+|++|+||=--.-=|- .|.-|+.||..||++|.++.
T Consensus 514 ~T~~~nl~LAGD~t~~~yPa---t~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 514 KTPISNFFLAGSYTKQDYID---SMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCCCCEEEeCcccccCCcc---hHHHHHHHHHHHHHHHHHHh
Confidence 44458999999976665564 66669999999999987754
No 173
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=66.90 E-value=2.4 Score=36.37 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.0
Q ss_pred eEEecccccccccccccCCCCCceeeC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..++.+.|+.|+.|...||++.|+++.
T Consensus 139 ~~v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 139 HTVISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred eeecCCcCCchHHHHHHcCcCceEEee
Confidence 457788999999999999998888873
No 174
>PRK06175 L-aspartate oxidase; Provisional
Probab=66.23 E-value=18 Score=34.56 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=34.7
Q ss_pred ccccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-+|+..+|.+++ -+ |-+.+..+..|+..|++||+.|...++
T Consensus 341 ~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 341 KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred cccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 356799999999974 33 455677889999999999999976553
No 175
>PRK10262 thioredoxin reductase; Provisional
Probab=65.83 E-value=5.1 Score=36.13 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=30.4
Q ss_pred ccccCCEEEeccCccC-CCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGF-LNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG~-vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-|+++.+||+++. ... +..|+..|..||.+|.+.|+
T Consensus 276 ~t~~~~VyA~GD~~~~~~~~-----~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 276 QTSIPGVFAAGDVMDHIYRQ-----AITSAGTGCMAALDAERYLD 315 (321)
T ss_pred ccCCCCEEECeeccCCCcce-----EEEEehhHHHHHHHHHHHHH
Confidence 4567999999999964 222 23399999999999999885
No 176
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=65.69 E-value=2.6 Score=37.10 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.0
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
.+.+|.+.|++|+.|.-.||.+.|..
T Consensus 142 p~~id~~~C~~C~~C~~~CP~~ai~~ 167 (234)
T TIGR02700 142 PYMIDRKRCKGCGICVDACPRSAIDM 167 (234)
T ss_pred ceEEChhHCcCcchHHHhCCcccEEe
Confidence 35788888999999998898877765
No 177
>PRK08764 ferredoxin; Provisional
Probab=65.68 E-value=3.3 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.5
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..++...|+.|+.|.-.||++.|+++
T Consensus 110 ~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 110 HTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred eeecCCcCcCccchhhhcCccceEeC
Confidence 45788899999999999999988764
No 178
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=65.44 E-value=2.6 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEecccccccccccccCCCCCceee
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+|...|+.|+.|.-.||++.|+++
T Consensus 238 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 238 QVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred eeCcccCcChhHHHhhcCccceeec
Confidence 4888999999999999999999875
No 179
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=64.93 E-value=2.5 Score=40.24 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=17.2
Q ss_pred ceEEecccccccccccccCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~ 227 (246)
.+.--+..|.+||.|..+||+
T Consensus 61 d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 61 DIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred hhHHHHHhCcCcccccccCcC
Confidence 344456789999999999996
No 180
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=64.84 E-value=7.4 Score=37.30 Aligned_cols=36 Identities=25% Similarity=0.106 Sum_probs=28.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
..-+|+..+||+++- | .=+..||..|+.||++|.+.
T Consensus 413 Ts~~~VfA~GD~~~g--~---~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 413 TSIPGVFAGGDIILG--A---ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred cCCCCEEEecCCCCC--c---HHHHHHHHHHHHHHHHHHhh
Confidence 345899999999851 1 24578999999999998764
No 181
>PLN02976 amine oxidase
Probab=64.81 E-value=11 Score=41.87 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=35.1
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd 127 (246)
..+++++++|++...-.|-+.+| |+.||.-||+.|+..+..|.
T Consensus 1148 PVggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1148 PVENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred CCCCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHHccC
Confidence 34556999999987666766666 99999999999999998764
No 182
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=64.21 E-value=4.3 Score=39.83 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.3
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
+=.|+-+-|+-||-|.-|||...|.=
T Consensus 44 kpvIsE~lCiGCGICvkkCPF~AI~I 69 (591)
T COG1245 44 KPVISEELCIGCGICVKKCPFDAISI 69 (591)
T ss_pred CceeEhhhhccchhhhccCCcceEEE
Confidence 44899999999999999999999864
No 183
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=64.05 E-value=2.4 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.1
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
...|+...|++|+.|.-.||.+.|++.
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~ 194 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEME 194 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEe
Confidence 468999999999999999999888775
No 184
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=63.85 E-value=2.5 Score=32.61 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.3
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
-.++.+.|++|+.|.-.||...|...
T Consensus 46 p~~d~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 46 PEFNRDKCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred EEEChhHCcChhhHHhhCCHhhEEec
Confidence 46789999999999999998877654
No 185
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=63.60 E-value=3.7 Score=39.07 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=24.1
Q ss_pred ceEEecccccccccccccCCC-CCceeeCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPT-QNINWVVPE 236 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~-~~i~w~~p~ 236 (246)
...|+...|+.|+.|...||. +.|+.....
T Consensus 371 ~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~ 401 (420)
T PRK08318 371 TPEVIEEECVGCNLCAHVCPVEGCITMGEVK 401 (420)
T ss_pred eEEechhhCcccchHHhhCCCCCCEEEeccC
Confidence 466888999999999999998 788766543
No 186
>PLN02268 probable polyamine oxidase
Probab=63.57 E-value=8.6 Score=36.18 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=28.8
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+++.++|++.....+-+. +=|+.||+.||+.|.++|
T Consensus 399 ~~l~FAGe~ts~~~~g~~---eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 399 DNLFFAGEATSSDFPGSV---HGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCeEEeeccCCCcccccH---HHHHHHHHHHHHHHHHhh
Confidence 479999999876555444 459999999999998765
No 187
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=63.50 E-value=15 Score=35.80 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=33.4
Q ss_pred ccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|.++|-+ +.+.+-.+..||.+|++|++.+.+.++
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 468899999987655 445677789999999999999877553
No 188
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=63.27 E-value=1.6 Score=30.31 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.6
Q ss_pred cccccccccccCCCCCceee
Q psy2242 214 NCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 214 nc~~c~~c~i~~p~~~i~w~ 233 (246)
+|..|+.|.-.||++.|.=.
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 59999999999999998654
No 189
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=63.09 E-value=11 Score=40.21 Aligned_cols=41 Identities=22% Similarity=0.025 Sum_probs=33.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd 127 (246)
...+|++++||++.- ..-+..||..|+.||++|.+.|..+.
T Consensus 718 Ts~pgVFAaGDv~~G-----~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 718 TNLPGVFAGGDIVTG-----GATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CCCCCEEEecCcCCC-----ccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456899999999752 13568999999999999999997554
No 190
>PRK10194 ferredoxin-type protein; Provisional
Probab=62.97 E-value=4 Score=33.72 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.4
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
...||.+.|+.|+.|.-.||.+.|+-+.
T Consensus 132 ~~~i~~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 132 QPQLNSQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred cceeCcccCcCcchhhhhCCccceEecc
Confidence 3578999999999999999999998654
No 191
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=62.74 E-value=3.8 Score=39.02 Aligned_cols=28 Identities=32% Similarity=0.665 Sum_probs=23.3
Q ss_pred cceEEecccccccccccccCCC---CCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPT---QNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~---~~i~w~ 233 (246)
.+..++..+|++|+.|.-.||. +.|.+.
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~ 365 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWD 365 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeec
Confidence 4667899999999999999996 467654
No 192
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=62.72 E-value=11 Score=35.95 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+++.++|+. +.+.||.-|+.||+.||+.|.+.+.
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHHHhh
Confidence 799999998 3345899999999999999988763
No 193
>PLN02612 phytoene desaturase
Probab=62.69 E-value=9.2 Score=37.97 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=30.9
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.+|+.++||....- ...+|+-|+.||+.||+.|.+.+.
T Consensus 512 i~~l~lAGd~t~~~---~~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 512 IEGFYLAGDYTKQK---YLASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred cCCEEEeecceeCC---chhhHHHHHHHHHHHHHHHHHHhc
Confidence 47899999997532 234888899999999999988764
No 194
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=62.53 E-value=3 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.1
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
...++.++|++|+.|...||+..|+-
T Consensus 677 ~p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 677 VPVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred cceeccccCCCccchHHhcChhhccc
Confidence 45679999999999999999999875
No 195
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=62.51 E-value=4.1 Score=44.09 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=22.9
Q ss_pred ceEEecccccccccccccCCCC--Cceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQ--NINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~--~i~w~ 233 (246)
+++++...|+.|+.|.-.||.. .|+.+
T Consensus 733 ~i~i~~~~C~gCg~Cv~~CP~~~~Al~m~ 761 (1165)
T TIGR02176 733 RIQISPLDCTGCGNCVDICPAKEKALVMQ 761 (1165)
T ss_pred eEEeccccCcCccchhhhcCCCCcccccc
Confidence 3689999999999999999995 46554
No 196
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=62.49 E-value=11 Score=37.05 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=35.4
Q ss_pred ccccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-+|+..+|+++|-+ |-+.+..+..|+.+|++||+.|++.++
T Consensus 358 ~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 358 ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 35579999999987655 445677788999999999999987664
No 197
>KOG1298|consensus
Probab=62.35 E-value=7 Score=37.68 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=31.5
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAE 117 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAe 117 (246)
.....|++++|||--+=.|+++.||.-|+....+--+
T Consensus 322 ~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ 358 (509)
T KOG1298|consen 322 LNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRR 358 (509)
T ss_pred cCCCCceEEEcccccccCCccCCceEeehhHHHHHHH
Confidence 3456899999999999999999999999987765544
No 198
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=62.25 E-value=3.6 Score=39.24 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.5
Q ss_pred ceEEecccccccccccccCCCCCceeeCCCCCCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAY 243 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg~g~~y 243 (246)
...++...|..|+.|...||++.|+.. .....+..|
T Consensus 33 ~~~i~~~~C~~C~~C~~~CP~~AI~~~-~~~~~~~~~ 68 (411)
T TIGR03224 33 NYVVKADVCNGCMACVSPCPTGAIDNW-RTMLRAKAY 68 (411)
T ss_pred ceEeCcccCcCHHHHHhhcCcccceec-ccccccccc
Confidence 467888999999999999999998842 333344444
No 199
>PRK06991 ferredoxin; Provisional
Probab=62.06 E-value=3.1 Score=37.72 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=21.1
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
...|+.+.|+.|+.|.-.||...|.-
T Consensus 79 ~~~id~~~CigCg~Cv~aCP~~AI~~ 104 (270)
T PRK06991 79 VAVIDEQLCIGCTLCMQACPVDAIVG 104 (270)
T ss_pred eeEEccccCCCCcHHHHhCCHhheec
Confidence 45688889999999999999877743
No 200
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=61.76 E-value=11 Score=38.11 Aligned_cols=40 Identities=23% Similarity=0.036 Sum_probs=31.6
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA 126 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g 126 (246)
..-+|++++||++..-+ =+..|+..|+.||.+|.+.|...
T Consensus 464 Ts~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 464 TSVAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCCCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 34589999999985321 25789999999999999999743
No 201
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=61.56 E-value=4.1 Score=39.73 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred ceEEecccccccccccccCCCCCceeeCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
.+.||...|+.|+.|...||+..|.+..-.
T Consensus 208 iV~ID~dkCiGCg~CV~ACPygAI~~n~~~ 237 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPYKKIYFNWKT 237 (492)
T ss_pred eEEEehhhccChHHHHHhCCCCCcEecCCC
Confidence 567999999999999999999999877443
No 202
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=61.44 E-value=3.8 Score=38.45 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=18.6
Q ss_pred ecccccccccccccCCC---CCceeeC
Q psy2242 211 NAQNCIHCKTCDIKDPT---QNINWVV 234 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~---~~i~w~~ 234 (246)
-+++||.|++|...||+ ..+...+
T Consensus 224 ~~~rCi~Cg~C~~~CPtC~C~~~~d~~ 250 (344)
T PRK15055 224 YDSRCIACGRCNFVCPTCTCFTMQDIF 250 (344)
T ss_pred HHhhCccCccccccCCceEeecccccc
Confidence 35699999999999999 5554443
No 203
>KOG1346|consensus
Probab=61.39 E-value=1.8 Score=42.04 Aligned_cols=40 Identities=25% Similarity=0.117 Sum_probs=33.4
Q ss_pred ccCCEEEeccCccCCCCccc----ccchhHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKI----KGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~----~Gi~~Am~SG~lAAeai~~a 122 (246)
++.++-++||||.|.|+..+ +--++|..||++|+|-...|
T Consensus 476 ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 476 ARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred cccceeeecchhhhhcccccceeccccccceeeceecccccccc
Confidence 56789999999999999865 45679999999999976544
No 204
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=60.94 E-value=6.3 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=25.1
Q ss_pred cceEEeccccc-----ccccccccCCC--CCceeeCC
Q psy2242 206 ERLQINAQNCI-----HCKTCDIKDPT--QNINWVVP 235 (246)
Q Consensus 206 ~~~~i~~~nc~-----~c~~c~i~~p~--~~i~w~~p 235 (246)
...+||.++|+ .|+.|.-.||+ +.|+....
T Consensus 124 ~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 124 VAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred eEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 34678999998 99999999999 57887654
No 205
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=60.84 E-value=5 Score=38.33 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.4
Q ss_pred cceEEeccccccccccc--ccCCCCCce
Q psy2242 206 ERLQINAQNCIHCKTCD--IKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~--i~~p~~~i~ 231 (246)
.+..++.+.|++|+.|. ..||+..|.
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~AI~ 322 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVPAIK 322 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHhhEe
Confidence 46789999999999995 799988775
No 206
>COG1146 Ferredoxin [Energy production and conversion]
Probab=60.44 E-value=4.8 Score=28.20 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.2
Q ss_pred ceEEecccccccccccccCCCCCceeeCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
+..||.+.|.-|+.|...||..-+.|..-+
T Consensus 2 ~~~Id~~~C~~c~~C~~~CP~~~~~~~~~~ 31 (68)
T COG1146 2 EIVIDYDKCIGCGICVEVCPAGVFDLGEDE 31 (68)
T ss_pred ceEECchhcCCCChheeccChhhEEecccc
Confidence 357899999999999999999999997654
No 207
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=60.43 E-value=2.8 Score=39.07 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=23.5
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.+|...|+.|+.|...||...|++.
T Consensus 137 ~V~id~dkCigCg~Cv~aCP~gai~~~ 163 (328)
T PRK10882 137 IVHYDKDVCTGCRYCMVACPFNVPKYD 163 (328)
T ss_pred cccCCHHHcCcccHHHHhCCccceecc
Confidence 567899999999999999999988754
No 208
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=60.18 E-value=14 Score=33.74 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=22.9
Q ss_pred cceEEeccccccccc--ccccCCC-CCceeeCCCC
Q psy2242 206 ERLQINAQNCIHCKT--CDIKDPT-QNINWVVPEG 237 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~--c~i~~p~-~~i~w~~p~g 237 (246)
.++.+....|+||.. |...||. ..|... +.|
T Consensus 84 ~~~~~~~~~C~hC~~p~Cv~aCP~~gA~~~~-~~G 117 (283)
T TIGR01582 84 LEWLIRKDGCMHCREPGCLKACPAPGAIIQY-QNG 117 (283)
T ss_pred ceEEECCccCCCCCCccccCCCCcCCeEEEc-CCC
Confidence 455677788999998 9999997 446543 443
No 209
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=59.57 E-value=4 Score=37.79 Aligned_cols=22 Identities=36% Similarity=0.872 Sum_probs=20.6
Q ss_pred ccceEEecccccccccccccCC
Q psy2242 205 GERLQINAQNCIHCKTCDIKDP 226 (246)
Q Consensus 205 ~~~~~i~~~nc~~c~~c~i~~p 226 (246)
+.++.|++++|+-|+-|.-+||
T Consensus 193 ~~~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 193 GKKLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred cceEEEehhhccCccHHhhhCC
Confidence 3689999999999999999999
No 210
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.54 E-value=11 Score=38.59 Aligned_cols=38 Identities=29% Similarity=0.100 Sum_probs=30.9
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
...+|++++||++.- | .-+..|+..|+.||.+|.+.|.
T Consensus 713 Ts~~gVfA~GD~~~g--~---~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRG--G---ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCC--c---HHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999852 1 2478999999999999998874
No 211
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=59.30 E-value=12 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=29.4
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
.--+|+.|+|+++ .| +.|+..||.||+.||+.|..
T Consensus 456 t~i~gLyl~G~~~---~p--G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 456 TAIPGLYCVGDSC---FP--GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCCCCeEEecCcC---CC--CCCHHHHHHHHHHHHHHHHh
Confidence 3457999999886 23 78999999999999999875
No 212
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=59.13 E-value=5.3 Score=35.64 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEecccccccccccccCCCCCceeeC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
.++...|..|+.|...||.+.|+++.
T Consensus 195 v~~~~~C~~C~~Ci~~CP~~AI~i~~ 220 (263)
T PRK00783 195 VTDLLNCSLCKLCERACPGKAIRVSD 220 (263)
T ss_pred EeChhhCCCchHHHHhCCCCceEEEE
Confidence 34777788888888888877777654
No 213
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=59.11 E-value=13 Score=35.16 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.0
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
.+|+.++||.- .+-||.-||.||+.||+.+.+++
T Consensus 427 ~~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 427 YPGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CCCEEEecccc------CCCcHHHHHHHHHHHHHHHHHhh
Confidence 46999999883 35599999999999999998876
No 214
>PRK10194 ferredoxin-type protein; Provisional
Probab=59.04 E-value=5.1 Score=33.06 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=16.4
Q ss_pred Eecccc-----cccccccccCCCCCceeeC
Q psy2242 210 INAQNC-----IHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 210 i~~~nc-----~~c~~c~i~~p~~~i~w~~ 234 (246)
++..+| +.|+.|.-.||++.|.+..
T Consensus 96 ~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 96 TIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred eecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 345556 5777777777777777653
No 215
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=58.86 E-value=4.9 Score=35.37 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=22.1
Q ss_pred ceEEecccccccccccccCCCCCce
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
+..++...|..|++|...||+++|.
T Consensus 197 ~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 197 RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred cEEEChhhccCHHHHHHHcCCCCcc
Confidence 4678999999999999999998863
No 216
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=58.79 E-value=7 Score=36.33 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred cceEEecccccccc--cccccCCCCCce
Q psy2242 206 ERLQINAQNCIHCK--TCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~--~c~i~~p~~~i~ 231 (246)
.++......|.||. .|.-.||++.|.
T Consensus 122 ~~~~y~p~~C~hC~nP~Cv~aCPtgAI~ 149 (321)
T TIGR03478 122 NYYFYLPRICNHCTNPACLAACPTGAIY 149 (321)
T ss_pred ceEEEecccCCCCCCccchhhCCcCcEE
Confidence 56778999999999 899999998884
No 217
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=58.66 E-value=13 Score=34.85 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.4
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
.+++.++||.- .+-||.-||.||+.||+.|.+
T Consensus 419 ~~~l~~aG~~~------~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 419 YPGLYVAGASF------EGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCEEEECccc------CCccHHHHHHHHHHHHHHHHh
Confidence 35999999973 245899999999999998754
No 218
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=58.58 E-value=5.2 Score=33.29 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.0
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
....+|...|++|+.|.-.||++.|...
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~ 133 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVGA 133 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEec
Confidence 4568999999999999999998877653
No 219
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=58.42 E-value=13 Score=35.70 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.2
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd 127 (246)
--+|+.++|+++ .-+.|+..||.||+.||+.|.+-+..+.
T Consensus 457 ~i~gLyl~G~~~-----~pG~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 457 KIDNLYLVGAGT-----HPGAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCEEEeCCCC-----CCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 358999999885 2368999999999999999987655443
No 220
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=58.03 E-value=5.1 Score=35.23 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.2
Q ss_pred ceEEecccccccccccccCCCCCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
+..+|...|..|+.|.-.||.+.|+-
T Consensus 171 ~~~i~~~~C~~Cg~C~~~CP~~AI~~ 196 (234)
T TIGR02700 171 KAFIRLLKCVGCGKCKEACPYNAIHG 196 (234)
T ss_pred ceEEchhhCCccchHHhhCCCCceec
Confidence 46889999999999999999998863
No 221
>KOG3256|consensus
Probab=57.40 E-value=6.6 Score=33.33 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=28.1
Q ss_pred eEEEEeCCCCCc--cceEEecccccccccccccCCCCCce
Q psy2242 194 VYEYVPLEDGSG--ERLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 194 vy~~~~~~~~~~--~~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
+-|+.+..+++. -+..|+..-||-||-|.-.||.+.|.
T Consensus 129 tieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 129 TIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred eeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 445554333322 35679999999999999999999885
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.03 E-value=12 Score=36.50 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=33.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA 126 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g 126 (246)
..-||+.++||+++.- .+-+..|+.+|..||.+|++.|...
T Consensus 474 Ts~p~IyAaGDv~~~~----~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 474 TSVPGVFAAGDCTTVP----YKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred CCCCCEEECccccCCC----CCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 3458999999998742 2458999999999999999988643
No 223
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=56.86 E-value=1.7 Score=28.98 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=8.0
Q ss_pred cccccccccccccCC
Q psy2242 212 AQNCIHCKTCDIKDP 226 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p 226 (246)
.+.|+.||.|.-.||
T Consensus 2 ~~~Ci~Cg~C~~~CP 16 (57)
T PF13183_consen 2 LSKCIRCGACTSVCP 16 (57)
T ss_dssp HHC--S-SHHHHCSH
T ss_pred HHHccCccChHHHCh
Confidence 356777777777776
No 224
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=56.59 E-value=14 Score=35.46 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=34.1
Q ss_pred cccCCEEEeccCccCCC----CcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 82 LTFPGGCLVGCTAGFLN----VPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 82 l~~~G~llVGDAAG~vd----p~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
...+.++.+||.|.+.+ |.+.+. |+..|..+|+.|...++.
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~---A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQA---AHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHH---HHHHHHHHHHHHHHHhcC
Confidence 34578999999999998 466655 999999999999988863
No 225
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=56.53 E-value=4.2 Score=39.27 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=17.3
Q ss_pred EecccccccccccccCCCCC
Q psy2242 210 INAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~ 229 (246)
-+..+|++|+.|.-.||.-.
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~ 309 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYR 309 (432)
T ss_pred hhHhhCCCCCCccccCcchh
Confidence 37899999999999999543
No 226
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=56.52 E-value=14 Score=39.27 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.7
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.+|+.++||++|. .++..|+.+|.+||.+|+..+.
T Consensus 438 v~gVyaaGD~~g~------~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGL------FGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCc------cCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999975 3889999999999999988774
No 227
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=55.97 E-value=7.2 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred ceEEecccccccccccccCCCCCceeeCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
...+|...|.-|+.|.-.||++.|+.+..++
T Consensus 193 ~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 193 VVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred eEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 4557888999999999999988888775443
No 228
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=55.77 E-value=5.4 Score=36.35 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.1
Q ss_pred cceEEecccccccccccccCCCCCceeeCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWVVPE 236 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~ 236 (246)
.++.+|-.-|--|++|.+.||...|+-+.-+
T Consensus 92 ~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~ 122 (284)
T COG1149 92 GKPVLNPDLCEGCGACSIVCPEPAIEEEPVV 122 (284)
T ss_pred CceecCcccccCcccceeeCCCcccccccce
Confidence 4778888888888888888888877765443
No 229
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=55.63 E-value=4.5 Score=36.12 Aligned_cols=27 Identities=19% Similarity=0.562 Sum_probs=23.4
Q ss_pred cceEEecccccccccccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+++.+ .+.|.+|+.|.-.||.+.|.+.
T Consensus 163 p~I~i-~~~C~~C~~C~~~CP~~vi~~~ 189 (263)
T PRK00783 163 PRIEV-SEDCDECEKCVEACPRGVLELK 189 (263)
T ss_pred ccccc-cccCCchHHHHHhCCccccEec
Confidence 35667 7899999999999999998884
No 230
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=55.60 E-value=12 Score=35.33 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=29.5
Q ss_pred cccCCEEEeccCccCCCCccccc-----chhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKG-----THNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++.-++.+++. .+.|+..|+.||+.|.
T Consensus 259 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 259 TSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred eCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 34689999999999876655432 3678888888888774
No 231
>PRK13795 hypothetical protein; Provisional
Probab=55.47 E-value=4.8 Score=40.69 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.6
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+..++...|++|+.|.-.||++.|...
T Consensus 575 ~~v~~~~~C~~Cg~C~~~CP~~ai~~~ 601 (636)
T PRK13795 575 RLLRRAAECVGCGVCVGACPTGAIRIE 601 (636)
T ss_pred eEEEccccCCCHhHHHHhCCcccEEee
Confidence 457888999999999999999988764
No 232
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=55.47 E-value=5.7 Score=34.02 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.2
Q ss_pred cceEEecccccccccccccCCCCCcee
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
....+|...|+.|+.|.-.||.+.|..
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~ 133 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVG 133 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhec
Confidence 456789999999999999999887754
No 233
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.38 E-value=16 Score=36.73 Aligned_cols=38 Identities=16% Similarity=-0.029 Sum_probs=30.1
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|++++||++.-. .=+..|+..|+.||++|.+.|.
T Consensus 598 Ts~~gVfA~GD~~~g~-----~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVHGA-----DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCCCc-----hHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999987532 1247899999999999999885
No 234
>PRK13795 hypothetical protein; Provisional
Probab=55.14 E-value=4.9 Score=40.62 Aligned_cols=25 Identities=24% Similarity=0.752 Sum_probs=22.2
Q ss_pred ceEEecccccccccccccCCCCCce
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
.+.||...|++|+.|.-.||.+.|.
T Consensus 606 ~~~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 606 KISVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred eEEechhhcCChhHHHhhcCCCeeE
Confidence 4789999999999999999988764
No 235
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=55.07 E-value=6.4 Score=34.56 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=23.9
Q ss_pred cceEEecccccccccccccCCC--CCceeeC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPT--QNINWVV 234 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~--~~i~w~~ 234 (246)
+.+.++.+.|+.|+.|...||. ..+.+..
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~ 169 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDV 169 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeee
Confidence 6889999999999999999993 4455554
No 236
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=55.01 E-value=16 Score=36.05 Aligned_cols=43 Identities=23% Similarity=0.054 Sum_probs=34.8
Q ss_pred cccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|+..+|++|+ -+ |-+.+..+..|+.+|++||+.+.+.++
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999985 23 445678899999999999999987664
No 237
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.89 E-value=16 Score=36.69 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=35.8
Q ss_pred cccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|+..+|++||-+ |-+-+..+..|+..|++||+++.+.++
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999988765 556778899999999999999887654
No 238
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=54.39 E-value=7 Score=35.65 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.2
Q ss_pred ceEEecccccccccccccCCCCCceeeCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVVPEGG 238 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg 238 (246)
.-.||.+-|+.||.|.--|+...|.| .|.|.
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~-~~~~~ 93 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVV-LPGGK 93 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEE-cCCCc
Confidence 44689999999999999999999988 55443
No 239
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.29 E-value=17 Score=36.55 Aligned_cols=38 Identities=21% Similarity=0.037 Sum_probs=30.0
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
..-+|++++||++.-- .=+..|+..|+.||+.|.+.|.
T Consensus 615 Ts~~gVfAaGD~~~g~-----~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVRGA-----DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCCCC-----cHHHHHHHHHHHHHHHHHHHhC
Confidence 3458999999997532 1257899999999999998874
No 240
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=54.25 E-value=19 Score=34.74 Aligned_cols=36 Identities=22% Similarity=0.039 Sum_probs=28.7
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
..++++++||+++-- .=+..|+..|+.||+.|.+.|
T Consensus 430 ~~~gVfa~GD~~~~~-----~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 430 TNPKIFAGGDAVRGA-----DLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCCEEEECCcCCCc-----cHHHHHHHHHHHHHHHHHHHh
Confidence 457999999997632 124689999999999998876
No 241
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=54.24 E-value=7.2 Score=34.91 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=27.4
Q ss_pred eEEecccccccccccccCCCC--CceeeCC----CCCCCCCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQ--NINWVVP----EGGGGPAYN 244 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~--~i~w~~p----~gg~g~~y~ 244 (246)
..||.+.|+.|+.|.-.||++ .|+ ++| .|.-|-.|+
T Consensus 179 p~Id~d~C~gCG~C~~aCP~~~~AI~-v~p~~~~~g~~g~~~~ 220 (254)
T PRK09476 179 PTVHSDACTGCGKCEKACVLEKAAIK-VLPRSLAKGKLGHHYR 220 (254)
T ss_pred eEEeHHHCcCcChhhHhcCCCcceEE-EehhhhhccccccCcc
Confidence 579999999999999999998 565 333 355555554
No 242
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=54.22 E-value=5.7 Score=35.55 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.4
Q ss_pred ceEEecccccccccccccCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~ 229 (246)
+-..+.++||+||.|.-.||...
T Consensus 151 ~~~~~~~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 151 DRAFDAAACIGCGACVAACPNGS 173 (250)
T ss_pred HhhhCccccCCCcccccccCCcc
Confidence 33567899999999999999864
No 243
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=54.10 E-value=16 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=31.1
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
...+++.++||+++- ..+.+..|+..|..||..|...|..
T Consensus 271 Ts~p~IyAaGDv~~~----~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 271 TNVPGVYAAGDLRPK----ELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred cCCCCEEEceeccCC----CcchheeHHhhHHHHHHHHHHHHHh
Confidence 346899999998741 1245678999999999999887753
No 244
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=53.91 E-value=6.9 Score=34.05 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.5
Q ss_pred ceEEecccccccccccccCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~ 229 (246)
.-+||.+.|+.|+.|.-.||+..
T Consensus 169 ~p~Vd~~~C~gCG~C~~~CP~~~ 191 (213)
T TIGR00397 169 IPTVDSAKCTGCGTCEKHCVLSE 191 (213)
T ss_pred ceEEecccCCCcchhhHhCCCCC
Confidence 45789999999999999999873
No 245
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=53.88 E-value=4.8 Score=30.66 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=21.1
Q ss_pred eEEecccccccccccccCCCCCceee
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
..+....|++|+.|...||...|...
T Consensus 29 ~~~~~~~C~~C~~C~~~CP~~~i~~~ 54 (101)
T TIGR00402 29 ESLFSAVCTRCGECASACENNILQLG 54 (101)
T ss_pred cccCcCcCcChhHHHHHcCcccceec
Confidence 33566789999999999998877764
No 246
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.49 E-value=19 Score=35.77 Aligned_cols=42 Identities=24% Similarity=0.088 Sum_probs=34.2
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-||+..+|++|+ -+ |-+.+..+..|+.+|++||+.+.+.++
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999985 33 456677889999999999999887654
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=52.87 E-value=9.5 Score=37.22 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=30.4
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+++.++||.++.-+ +-+..||..|..||.+|.+.|.
T Consensus 476 s~p~IyAaGDv~~~~~----~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPY----KQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CCCCEEEcccccCCcc----ceEEEEEccHHHHHHHHHHHHh
Confidence 4589999999997522 3456899999999999988774
No 248
>PRK06991 ferredoxin; Provisional
Probab=52.78 E-value=6.5 Score=35.64 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=24.1
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
...|+...|+.|+.|...||...|....
T Consensus 109 ~~~v~~~~CigCg~Cv~vCP~~AI~~~~ 136 (270)
T PRK06991 109 MHTVLADLCTGCDLCVPPCPVDCIDMVP 136 (270)
T ss_pred ceeeCHhhCCCchHHHhhCCcCCeEeec
Confidence 3568889999999999999999887653
No 249
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.54 E-value=19 Score=35.67 Aligned_cols=42 Identities=17% Similarity=0.008 Sum_probs=34.1
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+-+..+..|+.+|++||+++.+.++
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4699999999985 33 456677889999999999999887654
No 250
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=52.42 E-value=18 Score=36.08 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=35.3
Q ss_pred ccccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-+|+..+||+++ -+ |-+-+..+..|+.+|++||+++.+.++
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 456799999999875 23 456677889999999999999987664
No 251
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=51.75 E-value=6.3 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.3
Q ss_pred ecccccccccccccCCC
Q psy2242 211 NAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~ 227 (246)
-..-|.+||.|..+||+
T Consensus 46 la~lChnC~~C~~~CPy 62 (372)
T TIGR02484 46 LAHLCHDCQSCWHDCQY 62 (372)
T ss_pred HHHHCcCcccccccCcC
Confidence 36789999999999997
No 252
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=51.36 E-value=17 Score=34.63 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=27.5
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++.. .-.+.|+..|+.||+.|.
T Consensus 300 t~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 300 TAVPHIYAVGDVIGFP-----SLASASMDQGRIAAQHAV 333 (461)
T ss_pred cCCCCEEEeeecCCCc-----ccHhHHHHHHHHHHHHHc
Confidence 3468999999999742 236899999999999885
No 253
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=50.90 E-value=19 Score=35.72 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=29.8
Q ss_pred ccCCEEEec-cCccCCC-Cccccc--chhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVG-CTAGFLN-VPKIKG--THNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVG-DAAG~vd-p~~~~G--i~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+| +++|+.. -..+.| +..|+.+|++||+.+.+.+.
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 458899999 5555442 222334 67789999999999987664
No 254
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=50.75 E-value=7.5 Score=34.81 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=24.7
Q ss_pred cceEEeccccc-----ccccccccCCC--CCceeeC
Q psy2242 206 ERLQINAQNCI-----HCKTCDIKDPT--QNINWVV 234 (246)
Q Consensus 206 ~~~~i~~~nc~-----~c~~c~i~~p~--~~i~w~~ 234 (246)
..+.||.++|+ .|+.|.-.||. +.|++..
T Consensus 130 ~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 130 LAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred ceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 45569999999 89999999996 6788874
No 255
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=50.70 E-value=6.4 Score=36.80 Aligned_cols=16 Identities=38% Similarity=0.904 Sum_probs=15.0
Q ss_pred cccccccccccccCCC
Q psy2242 212 AQNCIHCKTCDIKDPT 227 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~ 227 (246)
+++||.|++|...||+
T Consensus 219 ~~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 219 DSRCIACGRCNTVCPT 234 (334)
T ss_pred HhhCCcCccccccCCc
Confidence 6799999999999997
No 256
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=50.64 E-value=6.6 Score=35.07 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=17.8
Q ss_pred EEecccccccccccccCCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~~ 229 (246)
.-...+||.|+.|.-.||.-.
T Consensus 148 ~~~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 148 AYELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred HhhhhhccCcCcccccCCCCc
Confidence 356889999999999999654
No 257
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=49.92 E-value=7.8 Score=34.48 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=25.4
Q ss_pred ceEEEEeCCCCCccceEEecccccccccccccCCCCCcee
Q psy2242 193 SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 193 ~vy~~~~~~~~~~~~~~i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
..|++.+ ++.++ ++|.+|+.|.-.||.+.|.-
T Consensus 157 ~~yr~~P-------~i~i~-~~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 157 CGYKYYP-------VIEID-EDCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred EEEEeec-------ceech-hhCCChHHHHHhCCccceEc
Confidence 4566654 56666 89999999999999998864
No 258
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.72 E-value=20 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=33.0
Q ss_pred cCCEEEeccCccC-C---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGF-L---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 84 ~~G~llVGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
-+|+..+|++|+. + |-+-+..+..|+.+|++||+.+.+.++
T Consensus 371 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 371 VRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred eCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999862 3 344566788999999999999887664
No 259
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=49.61 E-value=15 Score=36.53 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.5
Q ss_pred ccCCEEEec-cCccCCC---CcccccchhHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVG-CTAGFLN---VPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 83 ~~~G~llVG-DAAG~vd---p~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
.-+|+..+| +++|+.. |..+-.+..||.+|++||+.|.+.+
T Consensus 527 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 527 PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 358899999 4666553 3445567888999999999997654
No 260
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=49.50 E-value=5.9 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred EecccccccccccccCCCCCceee
Q psy2242 210 INAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
++...|++|+.|.-.||+..|.+.
T Consensus 187 ~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 187 GTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred cccccccchHHHHHhCCCCcEEec
Confidence 346799999999999999999775
No 261
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=49.36 E-value=27 Score=31.24 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCCCcccccCceEEEEeCC------CCC-ccceEEecc-cccccccccccCCCCCceeeCCCC
Q psy2242 170 GGLAYSGASIMMKGIEPWTFKWNSVYEYVPLE------DGS-GERLQINAQ-NCIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~vy~~~~~~------~~~-~~~~~i~~~-nc~~c~~c~i~~p~~~i~w~~p~g 237 (246)
+..+..++.-++.|..|+.-.+ .|=++..-+ ... -..-.||-. -|+-|+||-.+||+.+|.=.=|.|
T Consensus 140 ~e~I~~al~all~ge~p~l~~~-~lc~~c~~~~~~s~~~~~d~~~~ll~qg~~C~G~~TC~A~CP~~ai~c~Gc~g 214 (247)
T COG1941 140 PEEIARALTALLEGEEPELSGR-PLCPECPLAKLTSEKCRCDLDCCLLEQGLPCMGCGTCAASCPSRAIPCRGCRG 214 (247)
T ss_pred HHHHHHHHHHHHcCCCcccCCC-ccchhcccccccccccCCCccceeecCCCcccCchhhhccCCccCCcccCCcC
Confidence 6777777766788888873332 333332111 000 022345544 799999999999999987664444
No 262
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.25 E-value=21 Score=35.59 Aligned_cols=42 Identities=26% Similarity=0.120 Sum_probs=34.2
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+.+..+..|+.+|++||+.+.+.++
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 424 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999886 33 456677889999999999999887664
No 263
>PRK06116 glutathione reductase; Validated
Probab=48.69 E-value=23 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=27.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++... =.+.|+..|+.||+.+.
T Consensus 293 Ts~~~IyA~GD~~~~~~-----~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 293 TNVPGIYAVGDVTGRVE-----LTPVAIAAGRRLSERLF 326 (450)
T ss_pred cCCCCEEEEeecCCCcC-----cHHHHHHHHHHHHHHHh
Confidence 34589999999997532 25799999999999875
No 264
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=48.69 E-value=6.7 Score=35.92 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=21.0
Q ss_pred ceEEecccccccccccccCCC---CCcee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPT---QNINW 232 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~---~~i~w 232 (246)
+.+++..+|++|+.|.-.||. ..|.|
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~ 191 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKAVGALSF 191 (314)
T ss_pred CCceeCccCCcchHHHHhcChhhcCceec
Confidence 346789999999999999995 44555
No 265
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=48.48 E-value=8.4 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.1
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
.+...|+.|+.|.-.||...+
T Consensus 149 ~~~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 149 WKFAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred hcchhCcccCcccccCCCccc
Confidence 467899999999999997654
No 266
>PLN02676 polyamine oxidase
Probab=48.03 E-value=22 Score=34.53 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=32.7
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCC
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd 127 (246)
+++.++|++.....+-+.+| |+.||+.||+.|.+++....
T Consensus 438 gri~FAGe~ts~~~~g~~eG---A~~SG~RaA~~I~~~l~~~~ 477 (487)
T PLN02676 438 GRVYFTGEHTSEKYNGYVHG---AYLAGIDTANDLLECIKKKK 477 (487)
T ss_pred CceEEeccccccccccchHH---HHHHHHHHHHHHHHHhccCc
Confidence 48999999987665666666 99999999999999886543
No 267
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=48.02 E-value=9.3 Score=34.24 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.1
Q ss_pred ecccccccccccccCCC
Q psy2242 211 NAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~ 227 (246)
...+|.+|+.|...||.
T Consensus 198 gl~~C~~C~~C~~vCPk 214 (251)
T PRK12386 198 GLGYCNITKCCTEVCPE 214 (251)
T ss_pred CcccCcCCCCcCCcCCC
Confidence 46789999999999996
No 268
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=47.99 E-value=6.9 Score=36.58 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.0
Q ss_pred EEecccccccccccccCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~ 228 (246)
+...+.|+.||.|+-.||-.
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEY 316 (334)
T ss_pred ccCccccCCcCchhhhCCCC
Confidence 34688999999999999954
No 269
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=47.38 E-value=8.2 Score=35.13 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.2
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
-...+||.|++|.-.||.-..
T Consensus 184 ~~~~~CI~CG~C~saCPv~~~ 204 (276)
T PLN00129 184 DGMYECILCACCSTSCPSYWW 204 (276)
T ss_pred hhhhhCccccccccccCCCcc
Confidence 356789999999999996543
No 270
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=47.23 E-value=7.7 Score=33.66 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.4
Q ss_pred ecccccccccccccCCCCCc
Q psy2242 211 NAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~~i 230 (246)
...+|++|+.|.-.||....
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~ 155 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWW 155 (220)
T ss_pred hhhhccccccccccCCCCcc
Confidence 67899999999999997643
No 271
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.97 E-value=25 Score=35.21 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=34.2
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+.+..+..|+..|++||+.+.+.++
T Consensus 384 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 384 VVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred ccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 4799999999985 23 456677888999999999999887664
No 272
>PRK13984 putative oxidoreductase; Provisional
Probab=46.97 E-value=8.3 Score=38.32 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.4
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
+..+|...|..|+.|.-.||++.|+|+
T Consensus 80 ~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 80 RPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred ccccCcccCcCcchHHhhCCcCcEEec
Confidence 467899999999999999999998885
No 273
>PRK14694 putative mercuric reductase; Provisional
Probab=46.83 E-value=22 Score=34.05 Aligned_cols=35 Identities=20% Similarity=-0.021 Sum_probs=27.7
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+...+++.++||+++... =++.|+..|+.||..|.
T Consensus 299 ~Ts~~~IyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 299 QTTVSGIYAAGDCTDQPQ-----FVYVAAAGGSRAAINMT 333 (468)
T ss_pred ccCCCCEEEEeecCCCcc-----cHHHHHHHHHHHHHHhc
Confidence 345699999999998532 25789999999998875
No 274
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=46.57 E-value=9.4 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.563 Sum_probs=15.7
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
+..+|++|+.|.-.||.+
T Consensus 192 ~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred CCccCccccccccccCCC
Confidence 457899999999999963
No 275
>PRK07118 ferredoxin; Validated
Probab=46.47 E-value=8.4 Score=34.99 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=25.1
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
...+|...|+.|+.|...||++.|+..
T Consensus 162 ~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 162 LPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred eEEEChhhCcChhHHHHhcCccceeee
Confidence 578999999999999999999999887
No 276
>PRK07121 hypothetical protein; Validated
Probab=46.24 E-value=25 Score=33.94 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=29.5
Q ss_pred cCCEEEeccCcc-CC--CCcccccchhHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAG-FL--NVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 84 ~~G~llVGDAAG-~v--dp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
-+|+..+|..+| +. +-+.+-.+..||.+|++||+.+.+
T Consensus 449 I~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 449 IPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred cCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 589999996655 43 334577789999999999998864
No 277
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=46.18 E-value=6.4 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.801 Sum_probs=17.4
Q ss_pred cceEEecccccccccccccCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDP 226 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p 226 (246)
-++.-+..||.+||-|.|.+-
T Consensus 58 ~k~t~~g~~C~~Cg~C~Ig~l 78 (158)
T PF01976_consen 58 AKITSDGYNCKRCGKCDIGDL 78 (158)
T ss_pred CccCCCCCcCCCCCCCchhHH
Confidence 466668999999999999753
No 278
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=46.15 E-value=25 Score=33.80 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=28.9
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
.--+|+.++|+++ .| +.|+..++.||+.||+.|.+
T Consensus 456 t~i~gLyl~G~~~---~p--G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSI---HP--GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCcc---CC--CCcHHHHHHHHHHHHHHHhh
Confidence 3457999999987 23 67999999999999999864
No 279
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=46.04 E-value=7.8 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.8
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
-...+|++||.|.-.||.-..
T Consensus 141 ~~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 141 DGLYECILCACCSTACPSYWW 161 (235)
T ss_pred HhhhhCcccccccccccCccc
Confidence 367899999999999997544
No 280
>PLN02529 lysine-specific histone demethylase 1
Probab=45.99 E-value=20 Score=37.06 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=32.7
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
.+++.++||+...-.|-+.+| |+.||+-||+.|.+++..
T Consensus 562 ~grL~FAGEaTs~~~pgtVeG---Ai~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHG---AFLSGLREASRILHVARS 600 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHH---HHHHHHHHHHHHHHHHhh
Confidence 468999999987766766665 999999999999998854
No 281
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=45.94 E-value=26 Score=34.77 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=29.5
Q ss_pred ccCCEEEecc-CccCCC---CcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGC-TAGFLN---VPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGD-AAG~vd---p~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|. ++|+.. |..+-.+..||.+|++||+.+.+..+
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 3588999995 455542 22233477789999999999987653
No 282
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=45.79 E-value=28 Score=35.37 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=34.3
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+-+..+.-|+..|++|++.+.+.++
T Consensus 385 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 385 GLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred ccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3699999999986 23 556677889999999999999887764
No 283
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=45.78 E-value=9.4 Score=30.83 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.8
Q ss_pred ccccccccccccCCCCC
Q psy2242 213 QNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 213 ~nc~~c~~c~i~~p~~~ 229 (246)
..|..|++|...||...
T Consensus 46 ~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 46 WMCTTCYTCQERCPRDV 62 (144)
T ss_pred CcCcCcCchhhhcCCCC
Confidence 47999999999999754
No 284
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=45.71 E-value=8.8 Score=39.36 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=9.4
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
+...|++|+.|...||..
T Consensus 407 ~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 407 NLFDCIECGACAYVCPSN 424 (695)
T ss_pred ChhhccccCcccccCCCC
Confidence 334555555555555543
No 285
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=45.60 E-value=7.9 Score=36.06 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=22.5
Q ss_pred cceEEecccccccccccccCCCCCc
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
.-+.||.+.|+-|++|.+.|...|.
T Consensus 38 ~~~liD~tkCiGC~aC~~AC~~~n~ 62 (328)
T PRK10882 38 LGMLYDSTLCVGCQACVTKCQEINF 62 (328)
T ss_pred EEEEEeHhhCCCChHHHHHhccccC
Confidence 4688999999999999999998883
No 286
>PLN02576 protoporphyrinogen oxidase
Probab=45.52 E-value=33 Score=32.83 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+|+.++||.-. +-||.-||+||+.||+.|.+.+.
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHHh
Confidence 79999999875 34999999999999999988764
No 287
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=45.35 E-value=22 Score=35.21 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=33.0
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+.+..+.-|+.+|++||+.+.+.++
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999984 23 445556778899999999999887654
No 288
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=45.21 E-value=8.1 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=17.9
Q ss_pred cceEEecccccccccccc--cCCC
Q psy2242 206 ERLQINAQNCIHCKTCDI--KDPT 227 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i--~~p~ 227 (246)
.++.++.+.|+.|+.|.- .||.
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~ 566 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA 566 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCC
Confidence 467888888888888888 8884
No 289
>PRK14727 putative mercuric reductase; Provisional
Probab=45.14 E-value=24 Score=34.04 Aligned_cols=34 Identities=15% Similarity=-0.025 Sum_probs=27.2
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++... =++.|+..|+.||+.+.
T Consensus 311 Ts~~~IyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 311 TSAPDIYAAGDCSDLPQ-----FVYVAAAAGSRAGINMT 344 (479)
T ss_pred cCCCCEEEeeecCCcch-----hhhHHHHHHHHHHHHHc
Confidence 44589999999998531 25789999999999875
No 290
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=44.96 E-value=22 Score=32.84 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=26.8
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+|.+-+... .-+..|+.+|+.||+.+.
T Consensus 263 ts~~~VyA~GD~a~~~~~~~-~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 263 TSAPDIYALGDCAEINGQVL-PFLQPIQLSAMALAKNLL 300 (377)
T ss_pred cCCCCEEEeeecEeECCcee-ehHHHHHHHHHHHHHHhc
Confidence 34689999999997643211 125668888888888764
No 291
>PLN03000 amine oxidase
Probab=44.80 E-value=30 Score=36.53 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=42.9
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhCCCCC----CCCCchHHHHHHHHHhhchHHHH
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEAGDEV----STGLEPKSYEDKIKSSWIYKELK 153 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~gd~s~----~~~~~L~~Y~~~~~~s~~~~el~ 153 (246)
+++.++|++.....|-+. |=|+.||.-||+-|.+.+..-..+. +....+..|...+.+-|...||.
T Consensus 588 GRIfFAGEaTs~~~~GTV---hGAieSGlRAA~eIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (881)
T PLN03000 588 GRLFFAGEATTRRYPATM---HGAFVTGLREAANMAQSAKARGIRKRIDRNPSKNAHSCAILLADLFRDPDLE 657 (881)
T ss_pred CcEEEeehHHhCCCCeeH---HHHHHHHHHHHHHHHHHhhhccCCcccccCccccccchhHHHHHHhhCcCcc
Confidence 479999999887666554 5599999999999998886432110 00123445656565555555544
No 292
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=44.80 E-value=11 Score=33.72 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.6
Q ss_pred eEEecccccccccccccCCCCCc
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
-.-....||+|++|.-.||.-..
T Consensus 137 ~~~~~~~CI~CG~C~s~CPv~~~ 159 (251)
T PRK12386 137 RSQEFRKCIECFLCQNVCHVVRD 159 (251)
T ss_pred HHhchhhcccCCcccCcCCcccc
Confidence 34477899999999999996543
No 293
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=44.39 E-value=10 Score=33.65 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.4
Q ss_pred ccccccccccccCCCC
Q psy2242 213 QNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 213 ~nc~~c~~c~i~~p~~ 228 (246)
.+|.+|+.|.-.||.+
T Consensus 203 ~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 203 WSCTFVGYCSEVCPKH 218 (244)
T ss_pred hhCcCcccccccCCCC
Confidence 5999999999999963
No 294
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=44.34 E-value=34 Score=34.12 Aligned_cols=45 Identities=29% Similarity=0.271 Sum_probs=31.9
Q ss_pred ccCCEEEeccCccCC-CC-ccccc--chhHHHHHHHHHHHHHHHHHhCC
Q psy2242 83 TFPGGCLVGCTAGFL-NV-PKIKG--THNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 83 ~~~G~llVGDAAG~v-dp-~~~~G--i~~Am~SG~lAAeai~~al~~gd 127 (246)
.-+|+..+|..+|.+ .. ..+.| +..||.+|++||+.+.+.++..+
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~ 574 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAA 574 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcC
Confidence 348899999776544 21 12334 67889999999999988775443
No 295
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=43.67 E-value=11 Score=32.96 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.8
Q ss_pred cccccccccccccCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~ 228 (246)
-.+|++|+.|.-.||..
T Consensus 197 i~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 197 VFRCHTIMNCVEVCPKG 213 (232)
T ss_pred cccCcCcCCcCccccCC
Confidence 36899999999999963
No 296
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=43.43 E-value=7.3 Score=37.68 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=13.1
Q ss_pred cccccccccccCCC
Q psy2242 214 NCIHCKTCDIKDPT 227 (246)
Q Consensus 214 nc~~c~~c~i~~p~ 227 (246)
+||.||+|.--||-
T Consensus 309 ~CIRCGaC~n~CPv 322 (459)
T COG1139 309 RCIRCGACLNHCPV 322 (459)
T ss_pred HhhcchHhhhcChh
Confidence 89999999999994
No 297
>PRK09898 hypothetical protein; Provisional
Probab=43.22 E-value=18 Score=31.07 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=24.1
Q ss_pred ceEEecccccccc--cccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCK--TCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~--~c~i~~p~~~i~w~~ 234 (246)
++.++...|.||+ .|.-.||++.|....
T Consensus 115 ~~~~~~~~C~~C~~~~C~~~CP~gAi~~~~ 144 (208)
T PRK09898 115 DLNYTADTCRQCKEPQCMNVCPIGAITWQQ 144 (208)
T ss_pred cEEEeCccCCCccCcchhhhCCcceEEeec
Confidence 5678889999998 899999999988653
No 298
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=43.13 E-value=11 Score=36.26 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=9.4
Q ss_pred EecccccccccccccCC
Q psy2242 210 INAQNCIHCKTCDIKDP 226 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p 226 (246)
.+...|++|+.|.-.||
T Consensus 360 ~~~~~Ci~Cg~C~~vCP 376 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCP 376 (435)
T ss_pred ccCCcCcCccchhhhCc
Confidence 45555555555555555
No 299
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=42.99 E-value=11 Score=34.93 Aligned_cols=20 Identities=25% Similarity=0.647 Sum_probs=17.1
Q ss_pred ecccccccccccccCCCCCc
Q psy2242 211 NAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~~i 230 (246)
...+|+.||.|.-.||.-..
T Consensus 150 ~~~~Ci~CG~C~s~CP~~~~ 169 (329)
T PRK12577 150 QTGNCILCGACYSECNAREV 169 (329)
T ss_pred HhhhCcccCcccccCCCCCc
Confidence 47889999999999997644
No 300
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.91 E-value=32 Score=34.22 Aligned_cols=42 Identities=21% Similarity=0.039 Sum_probs=33.4
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+.+..+..|+..|++|++.+.+.++
T Consensus 374 ~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 374 VVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999875 33 345566788999999999999887654
No 301
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=42.88 E-value=8.4 Score=39.51 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.0
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
...+.||+|+.|.-.||.+-+
T Consensus 367 ~~e~~CI~CG~Cv~aCP~~ll 387 (695)
T PRK05035 367 PPEQPCIRCGACADACPASLL 387 (695)
T ss_pred CchhhcCCcccHHHHCCccch
Confidence 356889999999999998765
No 302
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=42.86 E-value=9.7 Score=36.84 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=16.5
Q ss_pred cccccccccccccCCCCCce
Q psy2242 212 AQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~~i~ 231 (246)
...|++|+.|.-.||++ |+
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-i~ 248 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-ID 248 (434)
T ss_pred CCCCCChhhhHHhCCCC-CE
Confidence 46899999999999987 54
No 303
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=42.73 E-value=11 Score=35.00 Aligned_cols=21 Identities=24% Similarity=0.399 Sum_probs=18.3
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
++...|+.|+.|.-.||..++
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred CCcCcCcCcCchhhhCCCCcc
Confidence 577899999999999998654
No 304
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=42.39 E-value=25 Score=34.57 Aligned_cols=38 Identities=26% Similarity=0.220 Sum_probs=28.9
Q ss_pred cCCEEEeccCccC-----CCC--cccccchhHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGF-----LNV--PKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 84 ~~G~llVGDAAG~-----vdp--~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
-||+..+|..+|+ ... +.+-.+..||.+|++|++.+.+
T Consensus 504 IpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 504 LPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred eCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 4889999999862 222 3355678899999999998865
No 305
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.29 E-value=37 Score=33.92 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=34.8
Q ss_pred ccccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-+|+..+|++++-+ |=+-+..+.-|+..|++||+.+.+.++
T Consensus 365 ~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 365 MTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999998654 334567788999999999999887664
No 306
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.21 E-value=31 Score=34.40 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=33.5
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
.-+|+..+|++|+ -+ |-+.+..+..|+..|++||+.+.+..
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999985 23 55667789999999999999987654
No 307
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=42.07 E-value=26 Score=32.09 Aligned_cols=34 Identities=29% Similarity=0.224 Sum_probs=26.0
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.+++.++||....--| .-|+-|+.||+.||+.|.
T Consensus 385 ~~~l~~aGd~~~~~~~---~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 385 WPNLFLAGDWTATGWP---ATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCEEEecccccCCCc---chHHHHHHHHHHHHHHHh
Confidence 4789999998654222 356779999999999875
No 308
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=41.83 E-value=19 Score=31.52 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.4
Q ss_pred cceEEeccccccccc--ccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCKT--CDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~--c~i~~p~~~i~w~ 233 (246)
.++.++...|+||+. |.-.||++.|...
T Consensus 85 ~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~ 114 (225)
T TIGR03149 85 VEYRFFRKSCQHCDNAPCVAVCPTGASFKD 114 (225)
T ss_pred ceeEECchhccCCcCcChHhhCCCCcEEEe
Confidence 456678899999995 9999999998754
No 309
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=41.69 E-value=10 Score=33.63 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=17.5
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
-+...||+|+.|.-.||.-.+
T Consensus 144 ~~~~~CI~Cg~C~saCP~~~~ 164 (244)
T PRK12385 144 HQFSGCINCGLCYAACPQFGL 164 (244)
T ss_pred HHHHhcCcCccccCcCcCccc
Confidence 356799999999999997643
No 310
>PLN02507 glutathione reductase
Probab=41.30 E-value=31 Score=33.64 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.3
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+...+++.++||+++... -.+.|+..|++||+.+.
T Consensus 327 ~Ts~p~IyAiGDv~~~~~-----l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 327 RTNIPSIWAIGDVTNRIN-----LTPVALMEGTCFAKTVF 361 (499)
T ss_pred cCCCCCEEEeeEcCCCCc-----cHHHHHHHHHHHHHHHc
Confidence 345789999999998532 45899999999998875
No 311
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.25 E-value=30 Score=33.06 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=27.5
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++.. .=.+.|+..|+.||+.|.
T Consensus 301 Ts~p~IyAiGD~~~~~-----~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 301 TNVPHIYAIGDVTAKL-----QLAHVAEAQGVVAAETIA 334 (466)
T ss_pred cCCCCEEEEeecCCCc-----ccHhHHHHHHHHHHHHHc
Confidence 4468999999999742 347889999999999875
No 312
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=41.15 E-value=34 Score=34.12 Aligned_cols=44 Identities=25% Similarity=0.120 Sum_probs=34.9
Q ss_pred ccccCCEEEeccCcc--CC--CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG--FL--NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-||+..+|++|+ +. |-+-+..+..|+..|++||+++.+...
T Consensus 367 ~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 367 ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 456799999999974 33 456677889999999999999887553
No 313
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.02 E-value=11 Score=38.03 Aligned_cols=27 Identities=37% Similarity=0.760 Sum_probs=23.2
Q ss_pred ceEEecccccccccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
.+.++...|+.|+.|...||++.|++.
T Consensus 79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 79 SVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred ceecChhhCcchhhHhhhcCCCCEEcc
Confidence 577888999999999999999888764
No 314
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=41.01 E-value=32 Score=33.29 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=34.1
Q ss_pred ccccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+|++|+ -+ |-+.+..+..|+.+|++||+.+.+..
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 456799999999973 33 45667888999999999999987643
No 315
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=40.95 E-value=12 Score=28.38 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=22.0
Q ss_pred EecccccccccccccCCCCCceee
Q psy2242 210 INAQNCIHCKTCDIKDPTQNINWV 233 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i~w~ 233 (246)
|||..|--||-|.-.||.+.|+=+
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv 86 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMV 86 (91)
T ss_pred eEcccccCceechhhCChhheEeE
Confidence 999999999999999999888644
No 316
>PRK13748 putative mercuric reductase; Provisional
Probab=40.95 E-value=30 Score=33.85 Aligned_cols=34 Identities=18% Similarity=-0.032 Sum_probs=27.6
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++.. .=++.|+..|++||+.+.
T Consensus 393 Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 393 TSVPHIYAAGDCTDQP-----QFVYVAAAAGTRAAINMT 426 (561)
T ss_pred cCCCCEEEeeecCCCc-----cchhHHHHHHHHHHHHHc
Confidence 4468999999999853 346789999999999875
No 317
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=40.92 E-value=32 Score=32.61 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=27.0
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..+++.++||+++.. .-.+.|+..|+.||+.|.
T Consensus 298 ~~~~IyaiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 330 (461)
T TIGR01350 298 NVPGIYAIGDVIGGP-----MLAHVASHEGIVAAENIA 330 (461)
T ss_pred CCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHc
Confidence 358999999999732 347899999999999885
No 318
>PRK12839 hypothetical protein; Provisional
Probab=40.80 E-value=32 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=29.8
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
.-+|+..+|.++| +. .|..+-.+..||.+|++||+.|.+
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 4588999997554 33 345566789999999999998864
No 319
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.69 E-value=38 Score=33.63 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=33.8
Q ss_pred cCCEEEeccCccC-C---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGF-L---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 84 ~~G~llVGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
-||+..+|++|+. + |-+-+..+.-|+..|++|++++.+.++
T Consensus 360 IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 360 IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999862 3 556667789999999999999987764
No 320
>PRK08401 L-aspartate oxidase; Provisional
Probab=40.30 E-value=31 Score=33.16 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=33.3
Q ss_pred ccccCCEEEeccCc--cCC--CCcccccchhHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTA--GFL--NVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 81 kl~~~G~llVGDAA--G~v--dp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
+..-+|+..+|++| |+- |-+.+..+..|+..|+.||+++.+.
T Consensus 320 ~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 320 RTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred cccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 34579999999997 332 4566778889999999999998653
No 321
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=40.12 E-value=37 Score=36.92 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=35.4
Q ss_pred ccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHHHhCCC
Q psy2242 83 TFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEALAEAGD 128 (246)
Q Consensus 83 ~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~~gd~ 128 (246)
.-+|+..+|..+|-+ +-+.+-.+..||.+|++||+.+.+.+++..+
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~~ 907 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY 907 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 468999999986654 2234556788999999999999998876553
No 322
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.09 E-value=31 Score=32.84 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=27.8
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
...+++.++||+++.. .-.+.|+..|+.||+.|..
T Consensus 299 t~~~~VyAiGD~~~~~-----~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 299 TNVPNIYAIGDIVGGP-----MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred cCCCCEEEeeecCCCc-----chHHHHHHHHHHHHHHHcC
Confidence 3458999999999732 3468999999999998863
No 323
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=40.03 E-value=38 Score=32.41 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=26.8
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.-+++.++||+++.. .=.+.|+..|+.||+.+.
T Consensus 294 ~~p~IyAiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 294 NVPGIYALGDVVGKV-----ELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CCCCEEEEEecCCCc-----ccHHHHHHHHHHHHHHHh
Confidence 458999999999743 136899999999999875
No 324
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=40.01 E-value=12 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=22.5
Q ss_pred ceEEecccccccccccccCCCCCceeeC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
+...+-.-||-|+.|.-.||.+.|+=..
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEEE
Confidence 4456667799999999999999976443
No 325
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=39.98 E-value=23 Score=34.72 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.8
Q ss_pred cceEEecccccccc--cccccCCCCCceee
Q psy2242 206 ERLQINAQNCIHCK--TCDIKDPTQNINWV 233 (246)
Q Consensus 206 ~~~~i~~~nc~~c~--~c~i~~p~~~i~w~ 233 (246)
..+......|+||. .|.-.||++.|.-.
T Consensus 174 ~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~ 203 (492)
T TIGR01660 174 TFMMYLPRLCEHCLNPACVASCPSGAIYKR 203 (492)
T ss_pred ceEEECCCcCcCCCcccchhhCccCCeEEe
Confidence 45677889999998 99999999998644
No 326
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=39.66 E-value=36 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=29.6
Q ss_pred CCEEEeccCc-cCC---CCcccccchhHHHHHHHHHHHHHHH
Q psy2242 85 PGGCLVGCTA-GFL---NVPKIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 85 ~G~llVGDAA-G~v---dp~~~~Gi~~Am~SG~lAAeai~~a 122 (246)
+|+..+|.++ |.+ +-+.+-++..||.+|++|++.+.+.
T Consensus 388 ~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 388 DNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 7999999864 433 3345778999999999999998654
No 327
>PRK07512 L-aspartate oxidase; Provisional
Probab=39.53 E-value=34 Score=33.47 Aligned_cols=44 Identities=27% Similarity=0.191 Sum_probs=34.4
Q ss_pred ccccCCEEEeccCc--cCC--CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTA--GFL--NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAA--G~v--dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+..-+|+..+|++| |+- |-+.+..+..|+..|++||+.|.+...
T Consensus 351 ~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 351 RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred ccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999997 332 455677788999999999999877553
No 328
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=39.00 E-value=43 Score=35.05 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHhC
Q psy2242 85 PGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAEA 126 (246)
Q Consensus 85 ~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~g 126 (246)
+++.++|++...-.|-+ ||=|+.||+-||+-|.++++..
T Consensus 644 GRL~FAGEaTs~~~~Gt---VhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 644 GRVFFAGEATNKQYPAT---MHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred CCEEEEEhhHhCCCCeE---hHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999977554544 5559999999999999988644
No 329
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=38.99 E-value=44 Score=29.62 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=33.9
Q ss_pred ccccCCEEEeccCccCCCCcccccchhH--HHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNA--MKSGMLAAEATYEALA 124 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~A--m~SG~lAAeai~~al~ 124 (246)
+-+.||.++.|=||.-++..-.=|=-.. +.||+.|||.|.+.|+
T Consensus 210 ~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 210 GEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 4578999999999999876544332222 5799999999999885
No 330
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=38.96 E-value=13 Score=34.56 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=15.0
Q ss_pred cccccccccccccCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~ 228 (246)
--+|++|+.|.-.||.+
T Consensus 208 iw~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 208 VWGCTRCYYCNSVCPME 224 (329)
T ss_pred cccCcChhhhhhhCCCC
Confidence 36899999999999964
No 331
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=38.32 E-value=11 Score=39.08 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.4
Q ss_pred ceEEecccccccccccccCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~ 228 (246)
++....+.|++|+.|...||..
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNS 414 (784)
T ss_pred HHhhhcccCCCcccchhhCCCC
Confidence 3445679999999999999976
No 332
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=38.00 E-value=13 Score=35.80 Aligned_cols=15 Identities=33% Similarity=0.981 Sum_probs=12.4
Q ss_pred cccccccccccCCCC
Q psy2242 214 NCIHCKTCDIKDPTQ 228 (246)
Q Consensus 214 nc~~c~~c~i~~p~~ 228 (246)
.|++|+.|...||.+
T Consensus 403 ~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 403 DCIECGCCSYVCPSN 417 (435)
T ss_pred cCCcCCCcccccCCC
Confidence 688888888888864
No 333
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=37.92 E-value=9 Score=39.71 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=19.3
Q ss_pred cceEEecccccccccccccCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~ 228 (246)
.++......|++|+.|.-.||++
T Consensus 397 eEl~~eadrCI~CG~Cv~aCP~~ 419 (781)
T PRK00941 397 EELKELAKKCTECGWCVRVCPNE 419 (781)
T ss_pred HHHHHhhhhCcCCCCccccCCCC
Confidence 35556788999999999999975
No 334
>PRK09077 L-aspartate oxidase; Provisional
Probab=37.74 E-value=38 Score=33.25 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=33.8
Q ss_pred ccccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+|++|+ -+ |=+.+..+..|+..|++||+.|.+..
T Consensus 363 ~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 363 RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 445799999999973 23 44567788899999999999987654
No 335
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=37.73 E-value=10 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.2
Q ss_pred cceEEecccccccccccccCCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~ 228 (246)
.++.....+|++|+.|.-.||..
T Consensus 358 ~el~~~~~kCI~CG~Cv~aCP~~ 380 (731)
T cd01916 358 EEFQELAAKCTDCGWCTRACPNS 380 (731)
T ss_pred HHHHHhhhcCCCCCcccccCCCC
Confidence 35566778999999999999976
No 336
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=37.60 E-value=37 Score=32.24 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=28.0
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
..-+++.++||+++.. + -.+.|+..|+.||..|..
T Consensus 296 ts~~~IyA~GD~~~~~-~----~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 296 TSVPGIYAAGDVNGKP-P----LLHEAADEGRIAAENAAG 330 (460)
T ss_pred cCCCCEEEEEecCCCc-c----chhHHHHHHHHHHHHhcC
Confidence 3468999999999853 2 358899999999998853
No 337
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=37.26 E-value=15 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.691 Sum_probs=17.9
Q ss_pred EecccccccccccccCCCCCc
Q psy2242 210 INAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i 230 (246)
-....|++||.|.-.||....
T Consensus 130 ~~~~~Ci~CG~C~~~CP~~~~ 150 (486)
T PRK06259 130 KKLRGCIECLSCVSTCPARKV 150 (486)
T ss_pred hCchhcccCccccccCCCCcc
Confidence 356899999999999998764
No 338
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=37.06 E-value=15 Score=26.14 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.5
Q ss_pred EecccccccccccccCCCC
Q psy2242 210 INAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~ 228 (246)
.....|+-||.|...||..
T Consensus 47 ~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred cCCccCCCcChHhhhcCCC
Confidence 3678899999999999964
No 339
>PRK08764 ferredoxin; Provisional
Probab=37.01 E-value=14 Score=29.67 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=19.5
Q ss_pred EecccccccccccccCCCCCcee
Q psy2242 210 INAQNCIHCKTCDIKDPTQNINW 232 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~i~w 232 (246)
++...|++|+.|.-.||...|..
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred ECcccCcCcchHHHhCChhhcCc
Confidence 45679999999999999887764
No 340
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=36.33 E-value=69 Score=32.42 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=33.4
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+-+..+..|+..|++||+.+.+.++
T Consensus 422 ~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 422 VVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred ccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999984 33 445567788999999999999877653
No 341
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=36.19 E-value=12 Score=33.06 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.2
Q ss_pred EEecccccccccccccCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~ 228 (246)
.-...+|+.|+.|.-.||.-
T Consensus 145 ~~~~~~CI~Cg~C~saCP~~ 164 (239)
T PRK13552 145 IYELDRCIECGCCVAACGTK 164 (239)
T ss_pred hhchhhccccchhHhhCCCC
Confidence 44788999999999999954
No 342
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=36.12 E-value=11 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred cccccccccccccCCCCCce
Q psy2242 212 AQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~~i~ 231 (246)
.+.|.+|+.|.-.||++.|.
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCccHHHHHHhcCccccc
Confidence 57899999999999999985
No 343
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=36.03 E-value=46 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=27.4
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++...++ .+.|+..|+.||+.+.
T Consensus 308 Ts~p~IyA~GDv~~~~~~l----~~~A~~~g~~aa~~i~ 342 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQEL----TPVAIQAGRLLAQRLF 342 (484)
T ss_pred cCCCCEEEEEEecCCCccc----hHHHHHHHHHHHHHHh
Confidence 4568999999998643332 5789999999999886
No 344
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.93 E-value=37 Score=33.61 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=31.1
Q ss_pred ccCCEEEeccCcc-CCC---CcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FLN---VPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~vd---p~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|..+| +.. |..+-.+..||.+|++||+.+.+.+.
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 4588999996665 432 11256789999999999999877653
No 345
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=35.88 E-value=42 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=27.6
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
..+|+.++||++.- | ..+..||..|+.||..|..
T Consensus 804 s~pgVFAaGD~a~G--P---~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 804 NITNVFVIGDANRG--P---ATIVEAIADGRKAANAILS 837 (1012)
T ss_pred CCCCEEEEeCcCCC--c---cHHHHHHHHHHHHHHHHhc
Confidence 45899999999742 2 3578999999999999865
No 346
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=35.86 E-value=41 Score=33.79 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=33.6
Q ss_pred ccCCEEEeccCcc-CC---CCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FL---NVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 83 ~~~G~llVGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
.-+|+..+|++|+ -+ |-+-+.++..|+..|++||+++.+.++
T Consensus 401 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~ 446 (617)
T PTZ00139 401 IVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEILK 446 (617)
T ss_pred ccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999984 23 445667889999999999999887653
No 347
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=35.56 E-value=41 Score=32.36 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=27.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++. | .-.+.|+..|..||+.|.
T Consensus 312 Ts~~~VyA~GD~~~~--~---~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 312 TNVPNVYAIGDVVRG--P---MLAHKAEEEGVAVAERIA 345 (475)
T ss_pred cCCCCEEEEEeccCC--c---chHHHHHHHHHHHHHHHc
Confidence 446899999999873 2 246899999999999875
No 348
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=35.27 E-value=1.3e+02 Score=26.64 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=27.6
Q ss_pred ccCCEEEeccCc---cCC--CCcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTA---GFL--NVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAA---G~v--dp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..|+..++|... +++ ..+.+.|+.+|...|++.|+.|.
T Consensus 292 t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 292 TPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred CCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 447777777432 332 56778899999999999888775
No 349
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=35.25 E-value=18 Score=32.27 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.4
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
..-+|.+|+.|.-.||..
T Consensus 207 g~~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 207 GIADCGNAQNCVRVCPKG 224 (249)
T ss_pred CeeCCcCcCcccccCCCC
Confidence 347999999999999963
No 350
>PRK08071 L-aspartate oxidase; Provisional
Probab=35.12 E-value=42 Score=32.76 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=33.4
Q ss_pred ccccCCEEEeccCcc--CC--CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG--FL--NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+|++|+ +- |-+.+..+..|+..|++||+.|.+..
T Consensus 342 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 342 ETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred cccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 345799999999974 32 55667778899999999999986543
No 351
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=34.95 E-value=14 Score=32.28 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.2
Q ss_pred EecccccccccccccCCCCC
Q psy2242 210 INAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~~ 229 (246)
-+...|+.|+.|.-.||...
T Consensus 138 ~~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 138 DGLYECILCACCSTSCPSFW 157 (232)
T ss_pred HhHHhccccccccccCCccc
Confidence 36789999999999999654
No 352
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.88 E-value=41 Score=32.39 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=27.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++. | .-.+.|+..|+.||+.|.
T Consensus 302 t~~p~VyAiGDv~~~--~---~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 302 TNVPHIFAIGDIVGQ--P---MLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred cCCCCEEEehhhcCC--c---ccHHHHHHHHHHHHHHHc
Confidence 446899999999873 2 246899999999999875
No 353
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=34.17 E-value=41 Score=31.71 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=27.8
Q ss_pred ccCCEEEeccCccCC---CCcccccchhHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAE 117 (246)
Q Consensus 83 ~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAe 117 (246)
.-||+..+|.++|-+ +.+.+..+..||.+|++|++
T Consensus 402 ~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 402 PIPGLFAAGEVTGGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EecccEEeeecccccCCCCCCchhhhhhhhhhhHhhcC
Confidence 468999999977654 45567778999999999975
No 354
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=34.16 E-value=15 Score=25.29 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=19.2
Q ss_pred cceEEeccccc------ccccccccCCCC
Q psy2242 206 ERLQINAQNCI------HCKTCDIKDPTQ 228 (246)
Q Consensus 206 ~~~~i~~~nc~------~c~~c~i~~p~~ 228 (246)
+++.++.+.|+ .|+.|...||.+
T Consensus 39 ~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 39 KKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred cCccchHHhhhcCCCccccchhhccCCCC
Confidence 56778888887 999999999964
No 355
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=33.63 E-value=18 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=15.2
Q ss_pred ecccccccccccccCCC
Q psy2242 211 NAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~ 227 (246)
+...|+.||.|.-.||.
T Consensus 305 g~~~CvgCGrC~~~CP~ 321 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPE 321 (344)
T ss_pred chhhCcCcCccccccCC
Confidence 56789999999999995
No 356
>PLN02568 polyamine oxidase
Probab=33.57 E-value=49 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=28.9
Q ss_pred CEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q psy2242 86 GGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALA 124 (246)
Q Consensus 86 G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 124 (246)
+++.+|.|...-.+-+ ||=|+.||+.||+.|++..+
T Consensus 501 ~l~FAGEat~~~~~~T---v~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 501 QLLFAGEATHRTHYST---THGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cEEEeecccCCCccch---HHHHHHHHHHHHHHHHHHhc
Confidence 6999999977655544 55599999999999988653
No 357
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.45 E-value=14 Score=36.46 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=17.3
Q ss_pred ceEEeccccccc------ccccccCCCCCceee
Q psy2242 207 RLQINAQNCIHC------KTCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c------~~c~i~~p~~~i~w~ 233 (246)
+...++++|++| +.|.-.||.+.|.+.
T Consensus 498 ~~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~ 530 (564)
T PRK12771 498 EARQEAARCLSCGNCFECDNCYGACPQDAIIKL 530 (564)
T ss_pred hhhhhcccCcccccccccchhhhhCChhheeee
Confidence 445566666666 667777777666654
No 358
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=33.06 E-value=47 Score=31.39 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=26.4
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEAT 119 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 119 (246)
.+++.++||.-.+.-| ..|+-||.||+.||+.|
T Consensus 420 ~~~l~~AG~~~a~~~~---g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 420 IPNFFLAGDYTKQKYL---ASMEGAVLSGKLCAQAI 452 (453)
T ss_pred cCCEEEeehhccCccc---ccHHHHHHHHHHHHHHh
Confidence 4789999998665433 37888999999999976
No 359
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=32.67 E-value=22 Score=33.25 Aligned_cols=20 Identities=25% Similarity=0.753 Sum_probs=17.0
Q ss_pred EEecccccccccccccCCCC
Q psy2242 209 QINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 209 ~i~~~nc~~c~~c~i~~p~~ 228 (246)
.....+|+.|+.|.-.||..
T Consensus 50 ~~~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 50 DESLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCCCcCcCcCccCcccCCC
Confidence 34678999999999999964
No 360
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=32.56 E-value=54 Score=31.90 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=27.1
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++-. .=.+.|+..|++||+.|+
T Consensus 316 Ts~~~IyA~GDv~~~~-----~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 316 TNVPNIYAIGDVTDRV-----MLTPVAINEGAAFVDTVF 349 (486)
T ss_pred CCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHh
Confidence 4468999999998732 245779999999999885
No 361
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=32.54 E-value=22 Score=25.58 Aligned_cols=21 Identities=29% Similarity=0.763 Sum_probs=18.0
Q ss_pred ceEEecccccccccccccCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~ 227 (246)
+..|+-..|+-|++|-.-+|.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EEEechhhccccchhhhcCCc
Confidence 456788899999999999984
No 362
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=32.09 E-value=26 Score=35.06 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=18.6
Q ss_pred eEEecccccccccccccCCCCCc
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNI 230 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i 230 (246)
..||. .|+.|+.|.-.||.+.|
T Consensus 574 ~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 574 AVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceeCC-CCcCHHHHHhhCccccC
Confidence 45777 79999999999998764
No 363
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=32.00 E-value=22 Score=31.77 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.5
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
...+|++|+.|.-.||..
T Consensus 210 gv~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 210 GFGNCTNTGECEAVCPKG 227 (250)
T ss_pred CcccCcccCccccccCCC
Confidence 456899999999999964
No 364
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=31.97 E-value=62 Score=32.47 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=34.5
Q ss_pred ccccCCEEEeccCccCC---CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFL---NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+|++|+-+ |=+-+..+..|+..|+.||+.|.+.+
T Consensus 380 ~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 380 MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999998755 34566788899999999999988754
No 365
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=31.46 E-value=79 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=35.8
Q ss_pred ccccCCEEEeccCccCCCCc-ccccchhHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVP-KIKGTHNAMKSGMLAAEATYEA 122 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~-~~~Gi~~Am~SG~lAAeai~~a 122 (246)
+...+++..+|+--|=.||+ -+.|--.||.||..||+.|.+.
T Consensus 377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 377 GPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 45579999999999999997 5557778999999999999864
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=31.12 E-value=62 Score=32.25 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=28.9
Q ss_pred ccccCCEEEeccCccCCC----------------Ccccc-------------cchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLN----------------VPKIK-------------GTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vd----------------p~~~~-------------Gi~~Am~SG~lAAeai~ 120 (246)
+..-+++.++||+++..+ |+..+ =.|.|.+.|++||+.++
T Consensus 362 qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 362 RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred ccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 345689999999999433 11111 14789999999999885
No 367
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=30.45 E-value=57 Score=31.07 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=27.3
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++.. .=.+.|+..|+.||..|.
T Consensus 294 Ts~~~VyAiGD~~~~~-----~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGL-----QLEYVAAKEGVVAAENAL 327 (463)
T ss_pred CCCCCEEEeeecCCCc-----ccHhHHHHHHHHHHHHhc
Confidence 4468999999999852 125889999999999885
No 368
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=30.43 E-value=64 Score=28.60 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=33.0
Q ss_pred ccccCCEEEeccCccCCCCcccccchhH--HHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNA--MKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~A--m~SG~lAAeai~~al 123 (246)
+-+.||+++.|=|+.-++..-.=|=-.. +.||+.|||.|.+.|
T Consensus 209 ~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 209 REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 5678999999999998876544442222 569999999998865
No 369
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=29.98 E-value=24 Score=32.02 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=15.4
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
+...|.+|+.|...||..
T Consensus 204 ~i~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRD 221 (279)
T ss_pred cCCcccCcccchhhCCCC
Confidence 446899999999999964
No 370
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=29.89 E-value=19 Score=32.08 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=16.4
Q ss_pred EecccccccccccccCCCC
Q psy2242 210 INAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~~ 228 (246)
-...+||.|+.|...||.-
T Consensus 139 ~~~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 139 DELSECILCGCCTAACPSI 157 (234)
T ss_pred HhhhhccccchhhhhCCcc
Confidence 4678999999999999954
No 371
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=29.85 E-value=22 Score=33.38 Aligned_cols=16 Identities=25% Similarity=1.009 Sum_probs=14.5
Q ss_pred ccccccccccccCCCC
Q psy2242 213 QNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 213 ~nc~~c~~c~i~~p~~ 228 (246)
..|+.|+.|...||.+
T Consensus 73 ~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 73 DRCLTCRNCETTCPSG 88 (407)
T ss_pred ccCccccchhhhCCCC
Confidence 5899999999999964
No 372
>PLN02815 L-aspartate oxidase
Probab=29.78 E-value=64 Score=32.41 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=34.2
Q ss_pred ccccCCEEEeccCcc--CC--CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG--FL--NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+|++|+ +- |-+.+..+..|+..|++|++.+.+.+
T Consensus 387 ~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 387 ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 345799999999874 32 45677889999999999999987543
No 373
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=29.19 E-value=1e+02 Score=25.40 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhchHHHHHHHhhhhhhhhccccHHHHHHHHH-HHH---hc-CCCCc-----ccccCceEE
Q psy2242 136 PKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIM---MK-GIEPW-----TFKWNSVYE 196 (246)
Q Consensus 136 L~~Y~~~~~~s~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~-~~~---~~-g~~~~-----~~~~~~vy~ 196 (246)
|.+.+-..-..|+.+||+.......-+.........++.+.+ .++ .| -+.-| +++|.+||.
T Consensus 33 lT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~h~g~Y~ 103 (146)
T PF07295_consen 33 LTREELALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQDLEHHGVYH 103 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCee
Confidence 444444444456667776654443332212344455555555 332 22 22222 788889984
No 374
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=28.64 E-value=67 Score=30.73 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=27.1
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++.. |+ .|.|...|++||+.|.
T Consensus 293 Ts~~~IyA~GD~~~~~-~l----~~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 293 TSARGVWALGDVSSPY-QL----KHVANAEARVVKHNLL 326 (452)
T ss_pred cCCCCEEEeecccCcc-cC----hhHHHHHHHHHHHHhc
Confidence 4468999999999843 33 4789999999999885
No 375
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=28.60 E-value=43 Score=27.38 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.7
Q ss_pred ceEEecccccccc--cccccCCCCCceee
Q psy2242 207 RLQINAQNCIHCK--TCDIKDPTQNINWV 233 (246)
Q Consensus 207 ~~~i~~~nc~~c~--~c~i~~p~~~i~w~ 233 (246)
+......+|+||+ .|.-.||+..|.=.
T Consensus 56 ~~~~~~~~C~~C~~~~C~~~CP~~ai~~~ 84 (161)
T TIGR02951 56 FAYYISISCNHCADPACVKNCPTGAMYKR 84 (161)
T ss_pred eEEEcCccCCCcCCcchHHhCCCCCEEee
Confidence 3345678999999 99999999887543
No 376
>PRK06370 mercuric reductase; Validated
Probab=28.57 E-value=71 Score=30.46 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=27.2
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++.. .=.+.|...|++||+.|.
T Consensus 299 t~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~ni~ 332 (463)
T PRK06370 299 TTNPGIYAAGDCNGRG-----AFTHTAYNDARIVAANLL 332 (463)
T ss_pred CCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHh
Confidence 4568999999998753 235789999999999875
No 377
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=28.31 E-value=26 Score=31.92 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.8
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
...+|.+|+.|...||..
T Consensus 242 gl~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKG 259 (276)
T ss_pred CCCcCcChhhccccCCCC
Confidence 568999999999999963
No 378
>PRK07804 L-aspartate oxidase; Provisional
Probab=28.17 E-value=61 Score=31.92 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=33.1
Q ss_pred ccccCCEEEeccCcc--CC--CCcccccchhHHHHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAG--FL--NVPKIKGTHNAMKSGMLAAEATYEAL 123 (246)
Q Consensus 81 kl~~~G~llVGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 123 (246)
+..-+|+..+||+++ +- |-+.+..+..++..|+.||+.+.+..
T Consensus 367 ~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 367 RTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred cccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345799999999973 32 55666778889999999999887654
No 379
>PRK08275 putative oxidoreductase; Provisional
Probab=28.06 E-value=77 Score=31.24 Aligned_cols=41 Identities=27% Similarity=0.205 Sum_probs=31.6
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
+..-+|+..+||+++.- ...+..|+..|+.||+.+.+.++.
T Consensus 366 ~t~i~gl~a~Ge~~~~~----~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 366 ETTVPGLYAAGDMASVP----HNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred ccCCCCEEECcccCCch----hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999987532 355667899999999998877653
No 380
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=27.82 E-value=25 Score=30.44 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=14.7
Q ss_pred cccccccccccCCCCC
Q psy2242 214 NCIHCKTCDIKDPTQN 229 (246)
Q Consensus 214 nc~~c~~c~i~~p~~~ 229 (246)
.|+.|-||...||..+
T Consensus 84 ~C~tCytC~eRCPr~v 99 (195)
T COG1150 84 ACVTCYTCTERCPRGV 99 (195)
T ss_pred eeeechhhhhhCCCCC
Confidence 6999999999999876
No 381
>PLN02546 glutathione reductase
Probab=27.72 E-value=67 Score=31.99 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=27.7
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+..-+++.++||.++... =.+.|+..|+.||+.+.
T Consensus 377 ~Ts~p~IYAaGDv~~~~~-----l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRIN-----LTPVALMEGGALAKTLF 411 (558)
T ss_pred eeCCCCEEEeeccCCCcc-----cHHHHHHHHHHHHHHHc
Confidence 345689999999998542 35789999999998875
No 382
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=27.39 E-value=1.2e+02 Score=30.05 Aligned_cols=39 Identities=21% Similarity=0.059 Sum_probs=27.9
Q ss_pred ccCCEEEeccCccCC-C-Cc--ccccchhHHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFL-N-VP--KIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 83 ~~~G~llVGDAAG~v-d-p~--~~~Gi~~Am~SG~lAAeai~~ 121 (246)
.-+|+..+|..+|-+ . -. .+-.+..|+.+|++||+.+.+
T Consensus 513 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 513 VIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 358899999997643 1 11 133467889999999998753
No 383
>PTZ00052 thioredoxin reductase; Provisional
Probab=27.38 E-value=76 Score=30.86 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=26.0
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.-+++.++||.++-..+ =.+.|+..|+.||+.+.
T Consensus 306 s~p~IyAiGDv~~~~~~----l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 306 NIPNIFAVGDVVEGRPE----LTPVAIKAGILLARRLF 339 (499)
T ss_pred CCCCEEEEEEecCCCcc----cHHHHHHHHHHHHHHHh
Confidence 35799999998852222 25899999999999885
No 384
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=27.35 E-value=25 Score=36.61 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=25.1
Q ss_pred eEEecccccccccccccCCCCCceeeCCCCCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWVVPEGGGG 240 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~~p~gg~g 240 (246)
.-||-+-|+.||.|.-.||.....=..=.|--|
T Consensus 187 ~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag 219 (978)
T COG3383 187 VPINESSCVSCGACVTVCPVNALMEKSMLGEAG 219 (978)
T ss_pred CccccccccccCccceecchhhhhhhhhhcccc
Confidence 447899999999999999988765444444444
No 385
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=27.25 E-value=73 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=27.6
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+..-+++.++||+++.. .-.+.|+..|.+||..++
T Consensus 301 ~Ts~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 301 RTSVPGIYAAGDCTGVL-----PLASVAAMQGRIAMYHAL 335 (466)
T ss_pred ccCCCCEEEEeeccCCc-----cchhHHHHHHHHHHHHHc
Confidence 34568999999999853 236899999999988775
No 386
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=27.24 E-value=30 Score=33.63 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.7
Q ss_pred EEecccccc--cccccccCCCC
Q psy2242 209 QINAQNCIH--CKTCDIKDPTQ 228 (246)
Q Consensus 209 ~i~~~nc~~--c~~c~i~~p~~ 228 (246)
..+...|++ |+.|...||..
T Consensus 409 ~~~~~~C~EedCG~CsyVCPsk 430 (448)
T PRK05352 409 ALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred HcCchhcCccccCCCccCCCCC
Confidence 378889999 99999999965
No 387
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=27.04 E-value=28 Score=30.84 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.9
Q ss_pred cccccccccccccCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~ 228 (246)
..+|.+|+.|.-.||..
T Consensus 200 l~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 200 LFRCRTIMNCVDVCPKG 216 (235)
T ss_pred cccccCcchhccccCCC
Confidence 45999999999999963
No 388
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=27.01 E-value=29 Score=32.55 Aligned_cols=18 Identities=28% Similarity=0.905 Sum_probs=16.1
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
....|+.|+.|...||..
T Consensus 50 ~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred ccccCcCcCccchhcCCC
Confidence 468999999999999974
No 389
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=26.91 E-value=23 Score=32.76 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.0
Q ss_pred cccccccccccccCCCCCce
Q psy2242 212 AQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~~i~ 231 (246)
...|..|+.|.-.||.+.|.
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~ 223 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAIS 223 (314)
T ss_pred cccCcchhHHHhhCCccccC
Confidence 37899999999999999875
No 390
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=26.80 E-value=80 Score=30.02 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.8
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+..-|++.++||+++.. + =.+.|+..|++||+.|.
T Consensus 290 ~Ts~~~IyA~GD~~~~~-~----l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 290 RTSIPSIYAVGDVTDRI-N----LTPVAIMEATCFANTEF 324 (446)
T ss_pred ccCCCCEEEeeccCCCc-c----chhHHHHHHHHHHHHHh
Confidence 34568999999999742 2 23689999999998875
No 391
>PRK07846 mycothione reductase; Reviewed
Probab=26.75 E-value=77 Score=30.33 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=27.0
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
..-+++.++||+++.. |+ .|.|...|++||+.|.
T Consensus 290 Ts~p~IyA~GD~~~~~-~l----~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 290 TSAEGVFALGDVSSPY-QL----KHVANHEARVVQHNLL 323 (451)
T ss_pred cCCCCEEEEeecCCCc-cC----hhHHHHHHHHHHHHHc
Confidence 4468999999999853 33 3789999999998875
No 392
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=26.65 E-value=72 Score=30.43 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=26.1
Q ss_pred ccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.-+++.++||+++-. +=.+.|+..|++||..+.
T Consensus 296 s~~~VyA~GD~~~~~-----~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 296 NVPHIYACGDVIGGI-----QLAHVAFHEGTTAALHAS 328 (458)
T ss_pred CCCCEEEEeecCCCc-----ccHHHHHHHHHHHHHHHc
Confidence 358999999999732 235789999999998874
No 393
>PF09657 Cas_Csx8: CRISPR-associated protein Csx8 (Cas_Csx8); InterPro: IPR013487 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Cxs8 family of Cas proteins, whose funciton is unknown. These proteins are encoded in the midst of a cas gene operon [].
Probab=26.63 E-value=1.8e+02 Score=28.20 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=46.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHhhchHHHHHHHhhhhhhhhccccHHHHHHHHH
Q psy2242 102 IKGTHNAMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA 177 (246)
Q Consensus 102 ~~Gi~~Am~SG~lAAeai~~al~~gd~s~~~~~~L~~Y~~~~~~s~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~ 177 (246)
++.|...|+++..+|..|.+.++ +. ..-|..|++++-.+-+.+|-.+.-.+---+++=-+.+.+++++.+
T Consensus 355 ~~~M~~~~k~a~a~A~ev~~k~~-n~-----~nKl~sYrqkL~sal~~kDy~rf~~iLlqLs~Ys~v~F~F~~dl~ 424 (441)
T PF09657_consen 355 GKEMEKNMKNAFACAKEVVKKFK-NS-----ENKLDSYRQKLISALIFKDYDRFCDILLQLSNYSGVSFGFAYDLF 424 (441)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHh-cc-----hhhHHHHHHHHHHHhhhcchhHHHHHHHHHHhhcCcccHHHHHHH
Confidence 34566799999999999999992 22 257999999999988877766544433222321244445555544
No 394
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=26.63 E-value=30 Score=23.86 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=17.5
Q ss_pred eEEecccccccccccccCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~ 227 (246)
++|+..+|+-|+.|---+|.
T Consensus 1 V~vD~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPE 20 (65)
T ss_pred CEEecccCcCccHHHhhCCc
Confidence 36889999999999999884
No 395
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=26.60 E-value=69 Score=33.19 Aligned_cols=39 Identities=13% Similarity=-0.078 Sum_probs=29.2
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+...+++.++||+|..-++..+ -+..|...|+.||+.+.
T Consensus 261 ~Ts~p~IyA~GD~a~~~~~~~g-l~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 261 QTSDPDIYAVGECAEHNGRVYG-LVAPLYEQAKVLADHIC 299 (785)
T ss_pred ccCCCCEEEeeecceeCCcccc-cHHHHHHHHHHHHHHhc
Confidence 3456899999999987654433 35668888888888775
No 396
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=26.56 E-value=59 Score=26.55 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=18.1
Q ss_pred CCccceEEecccc-cccccccccC
Q psy2242 203 GSGERLQINAQNC-IHCKTCDIKD 225 (246)
Q Consensus 203 ~~~~~~~i~~~nc-~~c~~c~i~~ 225 (246)
+.+.++.|-.|.| ++|+-|.-+.
T Consensus 14 GpG~r~~if~~GCnl~C~~C~n~~ 37 (154)
T PRK11121 14 GPGTRCTLFVSGCVHQCPGCYNKS 37 (154)
T ss_pred CCCcEEEEEcCCCCCcCcCCCChh
Confidence 3457888888999 9999997643
No 397
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=26.38 E-value=27 Score=33.77 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=15.0
Q ss_pred cccccccccccccCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~ 228 (246)
...|..|+.|...||..
T Consensus 342 ~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 342 PYLSSLCGACREVCPVK 358 (432)
T ss_pred CccchhhhhhhccCCCC
Confidence 46899999999999974
No 398
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.25 E-value=73 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=28.1
Q ss_pred ccccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 81 RLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 81 kl~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
+..-+++.++||+++. |. =.|.|...|++||+.|.
T Consensus 302 ~Ts~~~IyA~GD~~~~--~~---la~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 302 RTSVPGVWVIGDVTSG--PM---LAHKAEDEAVACIERIA 336 (466)
T ss_pred ecCCCCEEEeeecCCC--cc---cHHHHHHHHHHHHHHHc
Confidence 4457899999999984 22 35899999999999885
No 399
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=25.77 E-value=1.1e+02 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=27.8
Q ss_pred ccCCEEEeccCcc-CCC---CcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAG-FLN---VPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG-~vd---p~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.-+|+..+|.++| +.. |..+-.+..||.+|++||+.+.
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 3588999999754 442 2224448999999999999874
No 400
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.77 E-value=1.3e+02 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=27.9
Q ss_pred ccCCEEEeccCccCC-C---CcccccchhHHHHHHHHHHHHH
Q psy2242 83 TFPGGCLVGCTAGFL-N---VPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 83 ~~~G~llVGDAAG~v-d---p~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.-+|+..+|..+|-+ - |..+-.+..||.+|++||+.+.
T Consensus 521 pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 521 VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 358899999766543 2 2225568999999999999875
No 401
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=25.55 E-value=32 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=22.6
Q ss_pred cceEEecccccccccccccCCCCCce
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
+-.+|+++-|+-|+-|.-.||+..++
T Consensus 214 ~~~~I~~~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 214 KVVKIDYEKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred cceeechhhccchhhhhhhccCcccc
Confidence 45689999999999999999998753
No 402
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=25.31 E-value=39 Score=36.26 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=9.4
Q ss_pred ecccccc----cccccccCCCC
Q psy2242 211 NAQNCIH----CKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~----c~~c~i~~p~~ 228 (246)
+.++|+. |+.|.-.||.+
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~ 900 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNR 900 (1012)
T ss_pred ccccccCCCCCCCChhhhCChh
Confidence 4455553 55555555544
No 403
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=25.18 E-value=22 Score=24.25 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=10.9
Q ss_pred EecccccccccccccCCC
Q psy2242 210 INAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~ 227 (246)
||...|+-|+.|.-..|.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp E-TTT--S-SHHHHH-TT
T ss_pred CChhhCcCCChHHHhCcH
Confidence 567889999999998884
No 404
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=25.18 E-value=1.9e+02 Score=28.99 Aligned_cols=44 Identities=27% Similarity=0.218 Sum_probs=33.9
Q ss_pred cCCEEEeccCccCC----CCcccccchhHHHHHHHHHHHHHHHHHhCC
Q psy2242 84 FPGGCLVGCTAGFL----NVPKIKGTHNAMKSGMLAAEATYEALAEAG 127 (246)
Q Consensus 84 ~~G~llVGDAAG~v----dp~~~~Gi~~Am~SG~lAAeai~~al~~gd 127 (246)
-+|.+.+||++|-. |-+-+.=+.-++.+|++|++.+.+.++...
T Consensus 369 i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~ 416 (562)
T COG1053 369 IPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKS 416 (562)
T ss_pred CCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999855 333344566788999999999988886544
No 405
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=25.16 E-value=21 Score=33.13 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.1
Q ss_pred eEEecccccccccccccCCCCCceeeC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQNINWVV 234 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~~i~w~~ 234 (246)
..+|.+.|.-|+.|.-.||+..|+|.-
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc
Confidence 457889999999999999999999973
No 406
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=24.79 E-value=33 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=23.5
Q ss_pred cceEEecccccccccccccCCCCCce
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
+|..||..-|+-|+.|--.||+..|.
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred CceeecccccccchhhhhcCchhhee
Confidence 68999999999999999999988764
No 407
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=24.79 E-value=36 Score=36.56 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=17.7
Q ss_pred ceEEecccccccccccccCCCCC
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQN 229 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~ 229 (246)
...|+ ..|++||.|.-.||.+.
T Consensus 921 ~~~~~-~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 921 IVHLD-AMCNECGNCAQFCPWNG 942 (1019)
T ss_pred eEEcC-ccCccccchhhhCCCCC
Confidence 34454 89999999999999763
No 408
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=24.46 E-value=25 Score=36.59 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=17.8
Q ss_pred eEEecccccccccccccCCCC
Q psy2242 208 LQINAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 208 ~~i~~~nc~~c~~c~i~~p~~ 228 (246)
+..++..|+.|+.|.-.||++
T Consensus 432 l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 432 LEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred cccCHhhhhhhhHHhccCCCC
Confidence 445677999999999999975
No 409
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=24.44 E-value=89 Score=29.89 Aligned_cols=32 Identities=28% Similarity=0.147 Sum_probs=25.4
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
.+++.++||+++.. .=.+.|+..|+.||+.|.
T Consensus 310 ~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 310 ERHIYAIGDVIGEP-----QLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred CCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHc
Confidence 48899999998742 236789999999998764
No 410
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=23.98 E-value=31 Score=33.54 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred ccccccccccccCCCC
Q psy2242 213 QNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 213 ~nc~~c~~c~i~~p~~ 228 (246)
+.||+|+.|.-.||-+
T Consensus 373 ~aCI~CG~C~~vCPm~ 388 (447)
T TIGR01936 373 RAMIPIGIYERVMPLD 388 (447)
T ss_pred cceeECChHhhcCCCC
No 411
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=23.92 E-value=27 Score=33.14 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=21.3
Q ss_pred Eeccc--ccccccccccCCCCCceeeCCCC
Q psy2242 210 INAQN--CIHCKTCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 210 i~~~n--c~~c~~c~i~~p~~~i~w~~p~g 237 (246)
++... |+.|.+|.-.|+.....-..|.+
T Consensus 240 ~~~~~~~CI~C~~CidaCd~~~~~~~~~~~ 269 (386)
T COG0348 240 DIRDGLECIGCGRCIDACDDDMLKFNLPFG 269 (386)
T ss_pred ccccccccccHhhHhhhCCHHhheeccccc
Confidence 33445 99999999999988777766643
No 412
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=23.41 E-value=95 Score=29.33 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=26.5
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++.. .=.|.|+..|++|++.+.
T Consensus 282 Ts~~~IyA~GD~~~~~-----~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 282 TTADNIWAMGDVTGGL-----QFTYISLDDYRIVRDELL 315 (441)
T ss_pred cCCCCEEEeeecCCCc-----cchhHHHHHHHHHHHHHc
Confidence 4468999999999954 235778888888888874
No 413
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=23.40 E-value=52 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=21.9
Q ss_pred eEEecccccccc--cccccCCCCCceeeCCCC
Q psy2242 208 LQINAQNCIHCK--TCDIKDPTQNINWVVPEG 237 (246)
Q Consensus 208 ~~i~~~nc~~c~--~c~i~~p~~~i~w~~p~g 237 (246)
..+....|.||. .|.-.||...|....-.|
T Consensus 2 ~~~~~~~C~hC~~ppC~~~CP~~Ai~~~~~~G 33 (98)
T PF13247_consen 2 WEFVPVQCRHCEDPPCVEACPTGAIYKDPEDG 33 (98)
T ss_dssp EEEEEEC---BSS-HHHHHCTTTSEEEETTTS
T ss_pred ceEeCCcCcCcCCCchhhhCCccceEEEcCCC
Confidence 456778999998 899999999998876555
No 414
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=23.27 E-value=44 Score=25.01 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=17.1
Q ss_pred cccccccccccccCCCCCceeeCCCCCCCCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYN 244 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~~i~w~~p~gg~g~~y~ 244 (246)
.++|-|||. ++..=+.++||.|=
T Consensus 8 ~~~C~~CG~----------d~~~~~adDgPA~f 30 (86)
T PF06170_consen 8 APRCPHCGL----------DYSHARADDGPAYF 30 (86)
T ss_pred CCcccccCC----------ccccCCcCccchhH
Confidence 367888876 56666788899874
No 415
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=22.67 E-value=35 Score=35.77 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=20.2
Q ss_pred cceEEecccccccccccccCCC
Q psy2242 206 ERLQINAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 206 ~~~~i~~~nc~~c~~c~i~~p~ 227 (246)
..+..|..+||+|+.|.-.|+.
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~e 155 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKD 155 (819)
T ss_pred CcEEechhhcccccHHHhhCcc
Confidence 4789999999999999999995
No 416
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=22.49 E-value=89 Score=32.85 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=27.6
Q ss_pred cccCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 120 (246)
...|++.+|||+|..-+...+ =++.|...|+.||+.+.
T Consensus 271 Ts~p~IYAiGD~a~~~~~~~g-l~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 271 TSDPDIYAIGECASWNNRVFG-LVAPGYKMAQVAVDHLL 308 (847)
T ss_pred CCCCCEEEeecceeEcCcccc-cHHHHHHHHHHHHHHhc
Confidence 456899999999987655432 24677777777777764
No 417
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=22.06 E-value=96 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.023 Sum_probs=25.0
Q ss_pred cccCCEEEeccCccCCCCcc-----cccchhHHHHHHHHHHHHH
Q psy2242 82 LTFPGGCLVGCTAGFLNVPK-----IKGTHNAMKSGMLAAEATY 120 (246)
Q Consensus 82 l~~~G~llVGDAAG~vdp~~-----~~Gi~~Am~SG~lAAeai~ 120 (246)
...+++.++||+++..+... ..=-+.|.+.|++||+.+.
T Consensus 267 t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 267 TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 45689999999998543222 1223456677777776663
No 418
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=21.95 E-value=36 Score=33.05 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=15.8
Q ss_pred EecccccccccccccCCC
Q psy2242 210 INAQNCIHCKTCDIKDPT 227 (246)
Q Consensus 210 i~~~nc~~c~~c~i~~p~ 227 (246)
...+.|++|+.|.-.||.
T Consensus 371 ~~~~~CI~Cg~C~~vCP~ 388 (448)
T PRK05352 371 GSERAMVPIGNYERVMPL 388 (448)
T ss_pred CCCcceeecCcHhhcCCC
Confidence 446799999999999996
No 419
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=21.49 E-value=40 Score=32.77 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.0
Q ss_pred ecccccccccccccCCCC
Q psy2242 211 NAQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 211 ~~~nc~~c~~c~i~~p~~ 228 (246)
-..-|.+|+.|.-.||-+
T Consensus 356 ~~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 356 LPYACSLCGACTEVCPVK 373 (459)
T ss_pred cchhhccccCCCCcCCCC
Confidence 456799999999999943
No 420
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=21.32 E-value=44 Score=29.56 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=15.0
Q ss_pred cccccccccccccCCCC
Q psy2242 212 AQNCIHCKTCDIKDPTQ 228 (246)
Q Consensus 212 ~~nc~~c~~c~i~~p~~ 228 (246)
..+|.+|+.|.-.||..
T Consensus 205 i~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKD 221 (239)
T ss_pred cCCCcCcCccchhCCCC
Confidence 46999999999999963
No 421
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=21.03 E-value=1e+02 Score=31.49 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=25.8
Q ss_pred cCCEEEeccCccCCCCcccccchhHHHHHHHHHHHHHH
Q psy2242 84 FPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYE 121 (246)
Q Consensus 84 ~~G~llVGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 121 (246)
-+++.++||++|.. ++ .|.|...|++||+.|..
T Consensus 462 v~~IYAiGDv~g~~-~L----a~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 462 YDNIFCIGDANGKQ-ML----AHTASHQALKVVDWIEG 494 (659)
T ss_pred CCCEEEEEecCCCc-cC----HHHHHHHHHHHHHHHcC
Confidence 37999999999742 22 37899999999988853
No 422
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=20.79 E-value=1.5e+02 Score=29.64 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=30.9
Q ss_pred ccccCCEEEeccCccC-CCCcccccchhHHHHHHHHHHHHHHHHHh
Q psy2242 81 RLTFPGGCLVGCTAGF-LNVPKIKGTHNAMKSGMLAAEATYEALAE 125 (246)
Q Consensus 81 kl~~~G~llVGDAAG~-vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 125 (246)
+..-+|+.++||+++. .+. =.+.++..|++|++.+.+.+..
T Consensus 392 ~T~v~glyA~Ge~~~~~~~~----l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 392 MTTVEGLFAAGDVVGGSPHK----FSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccCCCCEEEeeecCCCCcch----hHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999863 222 2366888899999999888764
No 423
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=20.72 E-value=31 Score=29.70 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=21.5
Q ss_pred ceEEecccccccccccccCCCCCce
Q psy2242 207 RLQINAQNCIHCKTCDIKDPTQNIN 231 (246)
Q Consensus 207 ~~~i~~~nc~~c~~c~i~~p~~~i~ 231 (246)
--.|+-.||+-|.-|.-+||...|.
T Consensus 109 va~i~e~~ciGCtkCiqaCpvdAiv 133 (198)
T COG2878 109 VALIDEANCIGCTKCIQACPVDAIV 133 (198)
T ss_pred eeEecchhccccHHHHHhCChhhhh
Confidence 3479999999999999999987763
No 424
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=20.43 E-value=32 Score=35.40 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=18.5
Q ss_pred ccceEEecccccccccccccCC
Q psy2242 205 GERLQINAQNCIHCKTCDIKDP 226 (246)
Q Consensus 205 ~~~~~i~~~nc~~c~~c~i~~p 226 (246)
.+.+..|..+||+|+-|.-.|-
T Consensus 136 ~p~i~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 136 GPLISTEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred CcceeecccccccCcHHHHHHH
Confidence 3678899999999999976664
Done!