RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2242
(246 letters)
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 124 bits (312), Expect = 3e-34
Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 75 GLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSGMLAAEATYEAL-AEAGDEVSTG 133
G Q+IP+LTFPGG L+GC+ GF+NVPKIKGTH AMKSG LAAE+ + L +E + G
Sbjct: 235 GFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIG 294
Query: 134 LEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWGGLAYSGA-SIMMKGIEPWTFK 190
L YED +K+SW++KEL VRN RPS H LG++GG+ Y+G + +G+EPWT K
Sbjct: 295 LHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGMEPWTLK 352
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 101 bits (254), Expect = 2e-28
Identities = 54/69 (78%), Positives = 62/69 (89%)
Query: 5 DFNTYGGSFLYHLNEPSPLVAVGFVVGLDYTNPYLSPFKEFQRFKTHPAVRPVFEGGKRI 64
D +TYGGSFLYHLNE PL+A+GFVVGLDY NPYLSPF+EFQR+K HP+++P EGGKRI
Sbjct: 31 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRI 90
Query: 65 AYGARALNE 73
AYGARALNE
Sbjct: 91 AYGARALNE 99
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 102
Score = 99 bits (249), Expect = 9e-28
Identities = 47/54 (87%), Positives = 50/54 (92%)
Query: 193 SVYEYVPLEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYNGM 246
VYE+VPLE G G RLQINAQNC+HCKTCDIKDP+QNINWVVPEGGGGPAYNGM
Sbjct: 49 GVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 102
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 37.2 bits (85), Expect = 0.001
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 43 KEFQRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKI 102
K + + + A ++ G + + + G V G +
Sbjct: 232 KRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNM-YFAGMEVAELDGLNRMGPT 290
Query: 103 KGTHNAMKSGMLAAEATYEALA 124
G SG+ AAE + A
Sbjct: 291 FG--AMALSGVHAAEQILKHFA 310
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 28.9 bits (64), Expect = 0.15
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 205 GERLQINAQNCIHCKTCDIKDPTQNI--NWVVPEG 237
++ I+ CI C C+ P I VPE
Sbjct: 29 EDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEE 63
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 29.9 bits (65), Expect = 0.27
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 3/78 (3%)
Query: 49 KTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGT-HN 107
+P K A +L P G + G G H
Sbjct: 269 SDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQLRAPVGRV--YFTGEHTSEHYNGYVHG 326
Query: 108 AMKSGMLAAEATYEALAE 125
A SG+ +AE +
Sbjct: 327 AYLSGIDSAEILINCAQK 344
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 28.9 bits (64), Expect = 0.39
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 210 INAQNCIHCKTCDIKDPTQNINWVVPEGGGGPAYN 244
I+ + CI+C C + + +
Sbjct: 104 IDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV 138
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 28.9 bits (63), Expect = 0.55
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 53 AVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPGGCLVGCTAGFLNVPKIKGTHNAMKSG 112
+ VF G YG R+ F G +G++ A+++G
Sbjct: 280 MITRVFPPGILTQYGRVLRQPVD-----RIYFAGTETATHWSGYM--------EGAVEAG 326
Query: 113 MLAAEATYEALAEAGDEVSTGLEPKSYED 141
AA A+ + ++ EP+S +
Sbjct: 327 ERAAREILHAMGKIPEDEIWQSEPESVDV 355
>d2psba1 c.153.1.1 (A:13-308) Uncharacterized protein YerB {Bacillus
subtilis [TaxId: 1423]}
Length = 296
Score = 28.8 bits (64), Expect = 0.58
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 101 KIKGTHNAM-KSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCR 159
+ A +SG+ A+ EALAE T I S + + + VR+ R
Sbjct: 24 VVNNHPKARPQSGLSKADIVIEALAEGQ---ITRFLA------IFQSQMPETVGPVRSAR 74
Query: 160 PSFHSKLGLWGGL-AYSGASIMMK 182
F + + + + G S K
Sbjct: 75 EYFVTLSNGFDSIFVHHGWSPGAK 98
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 27.4 bits (60), Expect = 0.68
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 202 DGSGERLQINAQNCIHCKTCDIKDPTQNINWVVPEGGG 239
G + ++ CI +C P W G
Sbjct: 32 GIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHP 69
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria
meningitidis [TaxId: 487]}
Length = 164
Score = 27.5 bits (61), Expect = 1.0
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 15/60 (25%)
Query: 128 DEVSTGLEPKSYEDKIKSSWIYKE----LKEVRNC-----------RPSFHSKLGLWGGL 172
D + + K+ + YK K + + PS H KL W +
Sbjct: 77 DTEKIRQRYEDWVAKLCGNLGYKTRRALFKNMMSVDIWLHNGCLKISPSRHVKLEAWDAI 136
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 26.4 bits (57), Expect = 1.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 210 INAQNCIHCKTCDIKDPTQNINWVV 234
+NCI C C P I V+
Sbjct: 16 WVPENCIQCNQCAFVCPHSAILPVL 40
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 25.8 bits (56), Expect = 1.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 209 QINAQNCIHCKTCDIKDPTQNINWVVPEG 237
QI+ CI C TC PT I + E
Sbjct: 28 QIDEAKCIGCDTCSQYCPTAAIFGEMGEP 56
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 25.6 bits (55), Expect = 2.2
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 196 EYVPLEDGSGERLQINAQNCIHCKTC 221
EYV D + L ++ C+ C C
Sbjct: 5 EYV---DERSKSLTVDRTKCLLCGRC 27
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 149
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 200 LEDGSGERLQINAQNCIHCKTCDIKDPTQNINWVVP 235
L+ + C C +C P I+
Sbjct: 31 LDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGY 66
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 26.7 bits (58), Expect = 3.2
Identities = 13/114 (11%), Positives = 36/114 (31%), Gaps = 9/114 (7%)
Query: 108 AMKSGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLG 167
SGM AA + L + G+E+ G + D++ S + + V+ + +
Sbjct: 69 CFTSGM-AALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDE-- 125
Query: 168 LWGGLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTC 221
+ + + ++ + + + + + A +
Sbjct: 126 VAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH------AQGALVLVDNSIM 173
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId:
274]}
Length = 77
Score = 25.1 bits (54), Expect = 3.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 205 GERLQINAQNCIHCKTCDIKDPTQNI--NWVVPEG 237
G++ I+ + CI C C P I VPE
Sbjct: 29 GDQFYIHPEECIDCGACVPACPVNAIYPEEDVPEQ 63
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 25.8 bits (56), Expect = 3.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 198 VPLEDGSGERLQINAQNCIHCKTC 221
V + ++ + CIHCK C
Sbjct: 69 VDKHHPLSPFVILDRERCIHCKRC 92
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 25.7 bits (55), Expect = 4.5
Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 17/144 (11%)
Query: 64 IAYGARALNEGGLQAIPRLTFPG-GCLVGCTAGFLNVPKIKGTHNAMKSGMLAA------ 116
IA LNE + A P G GC + + ++K ++AA
Sbjct: 8 IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 67
Query: 117 ---------EATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLG 167
+ E + T + P + + L P +
Sbjct: 68 PYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQ 127
Query: 168 LWGGLAYSGASIMMKGIEPWTFKW 191
+G S S + G+ P
Sbjct: 128 AYGKPLVS-TSANLSGLPPCRTVD 150
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 24.7 bits (53), Expect = 4.9
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 215 CIHCKTCDIKDPTQNINWVVPEGGGG 240
CI C C PT + V +G
Sbjct: 10 CIGCTQCVRACPTDVLEMVPWDGCKA 35
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 23.8 bits (51), Expect = 6.2
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 207 RLQINAQNCIHCKTCDIKDPTQNI 230
R I+A CI C C P
Sbjct: 29 RYVIDADTCIDCGACAGVCPVDAP 52
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.1 bits (55), Expect = 6.6
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 187 WTFKWNSVYEYVPLEDGS 204
W W SVY L+ G
Sbjct: 30 WDGVWQSVYPL--LQSGK 45
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 25.3 bits (54), Expect = 6.6
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 46 QRFKTHPAVRPVFEGGKRIAYGARALNEGGLQAIPRLTFPG-GCLVGCTAGFLNVPKIKG 104
Q F HP P + I + +GG+ P + GC + + +I+
Sbjct: 3 QFFYIHP-DNP---QQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQ 58
Query: 105 THNAMKSGM 113
+ +
Sbjct: 59 LPDGHNFTL 67
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 25.2 bits (54), Expect = 7.4
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 18/113 (15%)
Query: 111 SGMLAAEATYEALAEAGDEVSTGLEPKSYEDKIKSSWIYKELKEVRNCRPSFHSKLGLWG 170
SGM A A+ +AGD + I +Y F +L +G
Sbjct: 21 SGMGAIAASVWTFLKAGDHL------------ISDDCLY------GCTHALFEHQLRKFG 62
Query: 171 GLAYSGASIMMKGIEPWTFKWNSVYEYVPLEDGSGERLQINAQNCIHCKTCDI 223
+ IE + + + + + + I K DI
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDI 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.440
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 999,447
Number of extensions: 46892
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 26
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)