BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2243
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1
Length = 616
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 75/96 (78%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI L G+ T K + D+ LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 471 GIFYWILRGMEPWTLKHKGSDSEQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 530
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTLKDDS+PVN NL++YDGPE RFCPAG E
Sbjct: 531 DQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYE 566
>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1
Length = 616
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 75/96 (78%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI L G+ T K + D+ LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 471 GIFYWILRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 530
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTLKDDS+PVN NL++YDGPE RFCPAG E
Sbjct: 531 DQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYE 566
>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1
Length = 617
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 74/96 (77%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI G+ T K + D+ LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 472 GIFYWIFRGMEPWTLKHKGSDSDKLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 531
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTLKDDSVPVN NL++YDGPE RFCPAG E
Sbjct: 532 DQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYE 567
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2
Length = 617
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 74/96 (77%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI G+ T K + D+ LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 472 GIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 531
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTLKDDSVPVN NL++YDGPE RFCPAG E
Sbjct: 532 DQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYE 567
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2
Length = 617
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 74/96 (77%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI L G+ T K + D LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 472 GIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 531
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTL+DDS+PVN NL++YDGPE RFCPAG E
Sbjct: 532 DQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYE 567
>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1
Length = 617
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 74/96 (77%)
Query: 278 GIGLTQLSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEG 337
GI L G+ T K + D LKPA +C PIEYPKPDGQ+SFDLLSSVAL+GTNHE
Sbjct: 472 GIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEH 531
Query: 338 DQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
DQPAHLTL+DDS+PVN NL++YDGPE RFCPAG E
Sbjct: 532 DQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYE 567
>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1
SV=2
Length = 597
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%)
Query: 296 KGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTLKDDSVPVNTN 355
K DN L P + K I+YPKPDG+++FDLL+SV+LTGTNH DQPAHLTLK+D VP++ N
Sbjct: 469 KKDNEKLIPVKDAKEIDYPKPDGKLTFDLLTSVSLTGTNHTEDQPAHLTLKNDQVPLDVN 528
Query: 356 LAVYDGPEGRFCPAGKLE 373
LAVY GPE RFCPAG E
Sbjct: 529 LAVYGGPEARFCPAGVYE 546
>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3
SV=1
Length = 606
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 280 GLTQLSGLFAHTP---KPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHE 336
G ++ HTP K DN LKPA+ECK IEY KPDGQ++FDL++SV +GTNHE
Sbjct: 461 GALEMYIFRGHTPWTLSNGKPDNERLKPAAECKKIEYKKPDGQITFDLMTSVMRSGTNHE 520
Query: 337 GDQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLE 373
+QP HL ++D V N +YDGPEGRFCPAG E
Sbjct: 521 ENQPIHLKVRDMEVAKKVNRDIYDGPEGRFCPAGVYE 557
>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=PA2953 PE=1 SV=1
Length = 551
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 290 HTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTLKDDS 349
H KP D LK ASE I+YPKPDG++SFD LSSV L+ TNHE DQP HL L D S
Sbjct: 422 HDDKP---DYACLKKASEAPKIDYPKPDGKLSFDKLSSVFLSNTNHEEDQPIHLKLADAS 478
Query: 350 VPVNTNLAVYDGPEGRFCPAGKLE 373
+P+ NL +YD P R+CPAG E
Sbjct: 479 IPIEKNLPLYDEPAQRYCPAGVYE 502
>sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CIR2 PE=1 SV=1
Length = 631
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 295 QKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTL--KDDSVPV 352
+K D L+PAS+ KPIEYPKPDG +SFD+L+SV+ TGT H+ D+P HL + +D
Sbjct: 500 EKNDGEILEPASKYKPIEYPKPDGVISFDILTSVSRTGTYHDDDEPCHLRVPGQDMVKYA 559
Query: 353 NTNLAVYDGPEGRFCPAGKLE 373
+ V+ G E RFCPAG E
Sbjct: 560 ERSFPVWKGVESRFCPAGVYE 580
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1
Length = 570
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 313 YPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKL 372
YPKPDG+++FD LSSV ++ T HE +QP+HL L D S+PV NL +D P R+CPAG
Sbjct: 461 YPKPDGKLTFDRLSSVFVSNTVHEENQPSHLKLTDASIPVAVNLPRWDEPAQRYCPAGVY 520
Query: 373 E 373
E
Sbjct: 521 E 521
>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC20G8.04c PE=3 SV=1
Length = 632
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 284 LSGLFAHTPKPQKGDNTFLKPASECKPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHL 343
L G T K + GD K AS+ KPI YPKPD +SFD+ +SV+ + T H +QP HL
Sbjct: 493 LKGRVPWTLKHKGGDAKATKSASKYKPINYPKPDNVLSFDIPTSVSRSATMHAENQPCHL 552
Query: 344 TLKDDSVPVNTN--LAVYDGPEGRFCPAGKLENHNTQ 378
D P + Y G E +FCPAG E N +
Sbjct: 553 F---DHRPKDRKSCFETYKGVENKFCPAGVYEYVNDE 586
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 92 IPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYT 151
+PF K + E ++ W + L +Y HQV +++ + E + +YT
Sbjct: 575 VPFTKEQVMWEMQKGWYYSW----LPEIVYT-----HQVVHDDWRMKLVEEPTSGITIYT 625
Query: 152 DGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD 211
DG K + A+V K++ L P + AE +AI A+ + + + I++D
Sbjct: 626 DGGKQNGEGIAAYVTSNGR-TKQKRLGPVTHQV-AERMAIQMALEDTRDKQVN---IVTD 680
Query: 212 SLSALQAISS-------MSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLE 264
S + I+ S P++Q+I E+ + F W P H GI GN AD
Sbjct: 681 SYYCWKNITEGLGLEGPQSPWWPIIQNIREK------EIVYFAWVPGHKGICGNQLADEA 734
Query: 265 AK 266
AK
Sbjct: 735 AK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 92 IPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYT 151
+PF K + E ++ W + L +Y HQV +++ + E + +YT
Sbjct: 575 VPFTKEQVMWEMQKGWYYSW----LPEIVYT-----HQVVHDDWRMKLVEEPTSGITIYT 625
Query: 152 DGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD 211
DG K + A+V K++ L P + AE +AI A+ + + + I++D
Sbjct: 626 DGGKQNGEGIAAYVTSNGR-TKQKRLGPVTHQV-AERMAIQMALEDTRDKQVN---IVTD 680
Query: 212 SLSALQAISS-------MSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLE 264
S + I+ S P++Q+I E+ + F W P H GI GN AD
Sbjct: 681 SYYCWKNITEGLGLEGPQSPWWPIIQNIREK------EIVYFAWVPGHKGICGNQLADEA 734
Query: 265 AK 266
AK
Sbjct: 735 AK 736
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 92 IPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMNENYGDFVQVYT 151
+PF K + E ++ W + L +Y HQV +++ + E + +YT
Sbjct: 574 VPFTKEQVMWEMQKGWYYSW----LPEIVYT-----HQVVHDDWRMKLVEEPTSGITIYT 624
Query: 152 DGSKSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISD 211
DG K + A+V K++ L P + AE +AI A+ + + + I++D
Sbjct: 625 DGGKQNGEGIAAYVTSNGR-TKQKRLGPVTHQV-AERMAIQMALEDTRDKQVN---IVTD 679
Query: 212 SLSALQAISS-------MSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLE 264
S + I+ + P++Q+I E+ + F W P H GI GN AD
Sbjct: 680 SYYCWKNITEGLGLEGPQNPWWPIIQNIREK------EIVYFAWVPGHKGIYGNQLADEA 733
Query: 265 AK 266
AK
Sbjct: 734 AK 735
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
Query: 150 YTDGSKS-DSSVGCA-FVIPQ--LHIVK-KQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG+ + ++ +G A +V Q I+K +T N K+ + A LLA+ D+ T+
Sbjct: 1027 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELM-AILLALQDSKETVN----- 1080
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
I++DS AL ISS +P+VQ I EE++ + W P+H GI GN+ D
Sbjct: 1081 ---IVTDSQYALGVISSQPTQSESPIVQQIIEELTK--KEQVYLTWVPAHKGIGGNEKID 1135
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 150 YTDGSKSDSSVGCAFVIPQLHIVKKQTL--NPKSSIFHAELLAISDAVSTIKSQSIGEAV 207
YTDG K S A+ + ++++ + + A L+A+ D + +
Sbjct: 966 YTDGGKKGSKAAAAYW--REGKIRREVFPGTNQQAELKAVLMALQDGPAKMN-------- 1015
Query: 208 IISDSLSALQAISSMSHS---NPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLE 264
II+DS A + + + L + I EE+ + W P H GI GN D E
Sbjct: 1016 IITDSRYAFEGMREEPETWGREGLWKEIGEELRR--KEYVGVSWVPGHKGIGGNTEVDQE 1073
Query: 265 AKSALENPIS 274
+ AL+ PI+
Sbjct: 1074 VQKALQGPIT 1083
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
Query: 150 YTDGSKS-DSSVGCA-FVIPQ--LHIVK-KQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG+ + ++ +G A +V Q +I+K ++T N K AEL+A+ A+ K Q
Sbjct: 1029 YVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQK-----AELMAVLIALQDSKEQ--- 1080
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
I++DS L ISS +P+VQ I EE++ + W P+H GI GN+ D
Sbjct: 1081 -VNIVTDSQYVLGIISSQPTQSDSPIVQQIIEELTK--KERVYLTWVPAHKGIGGNEKID 1137
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 81 VGIQREILMNDIPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQVFQQEFQRNMN 140
VG + ++ +P ++ RE E W H+ C + + + + + ++E+
Sbjct: 971 VGRESIVIWGFVPKMQIPTTREIWEDWWHEYWQCTW---IPEVEFISTPMLEREWYSLSP 1027
Query: 141 ENYGDFVQVYTDGSKS-DSSVGCAFVIPQLHIVK-KQTLNP--KSSIFHAELLAISDAVS 196
E Y DG+ + DS +G A I + ++ LN + + HA LA+ D+ S
Sbjct: 1028 EPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQTELHAVKLALEDSGS 1087
Query: 197 TIKSQSIGEAVIISDSLSALQAISS--MSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVG 254
+ I++DS + ++S +P+V+ I E + I W P+H G
Sbjct: 1088 YVN--------IVTDSQYVVGILASRPTETDHPIVKEIIELMKG--KEKIYLSWLPAHKG 1137
Query: 255 IAGNDAAD 262
I GN+ D
Sbjct: 1138 IGGNEQID 1145
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 150 YTDGSKS-DSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVI 208
Y DG+ + DS G A + + + L ++ AEL A+ A+ S + I
Sbjct: 1055 YVDGAANRDSKKGRAGYVTNRGRYRSKDLE-NTTNQQAELWAVDLALK----DSGAQVNI 1109
Query: 209 ISDS---LSALQAISSMSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
++DS + LQ + S S P+V+ I ++++ + I W P+H GI GN+ D
Sbjct: 1110 VTDSQYVMGVLQGLPDQSDS-PIVEQIIQKLTQ--KTAIYLAWVPAHKGIGGNEEVD 1163
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 150 YTDG-SKSDSSVGCAFVIP----QLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG S ++ G A + Q + T N K+ + HA LA+ D S
Sbjct: 1025 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTEL-HAIYLALRD--------SGL 1075
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I EE+ I + W P+H GI GN+ D
Sbjct: 1076 EVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL--IKKEKVYLSWVPAHKGIGGNEQVD 1133
Query: 263 LEAKSALENPISHD 276
S + + D
Sbjct: 1134 KLVSSGIRKVLFLD 1147
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 186 AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNP------LVQSIHEEISTI 239
AEL AI A+ +S EA I++DS A+ I HS P LV I EE+ I
Sbjct: 1074 AELQAILLALQ----ESGQEANIVTDSQYAMGII----HSQPDKSESDLVGQIIEEL--I 1123
Query: 240 PNSTIKFFWCPSHVGIAGNDAADLEAKSAL 269
+ W P+H GI GN+ D S +
Sbjct: 1124 KKERVYLSWVPAHKGIGGNEQVDXLVSSGI 1153
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 150 YTDG-SKSDSSVGCAFVIP----QLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG S ++ VG A + Q I T N K+ + A LA+ D S
Sbjct: 1025 YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTEL-QAIYLALQD--------SGI 1075
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I EE+ I + W P+H GI GN+ D
Sbjct: 1076 EVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL--IKKEKVYLSWVPAHKGIGGNEQVD 1133
Query: 263 LEAKSALENPISHD 276
S + + D
Sbjct: 1134 KLVSSGIRKVLFLD 1147
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 144 GDFVQVYTDGSKSDSS-----VGCAFVIPQLHIVKKQTLNP-KSSIFHAELLAISDAVST 197
GDFV VYTDG S + G H + P + + AE+ A A+
Sbjct: 137 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQ 196
Query: 198 IKSQSIGEAVIISDSLSALQAISSMSHS---NPLVQSIHEEI----------STIPNSTI 244
K+Q+I + V+ +DS+ + I++ N S +E+ I
Sbjct: 197 AKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDI 256
Query: 245 KFFWCPSHVGIAGNDAADLEAKSA 268
++ P H G GN+ AD A+
Sbjct: 257 QWMHVPGHSGFIGNEEADRLAREG 280
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 150 YTDGSKS-DSSVGCAFVI----PQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG+ + ++ +G A + Q I +T N K AEL AI A+ +S
Sbjct: 1026 YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQK-----AELQAIQLALQDSRS---- 1076
Query: 205 EAVIISDSLSALQAISSMSHSNP--LVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1077 EVNIVTDSQYALGIIQAQPDRSEAELVNQIIEQL--IKKEKVYLSWVPAHKGIGGNEQVD 1134
Query: 263 LEAKSALENPISHD 276
S + + D
Sbjct: 1135 KLVSSGIRKVLFLD 1148
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 150 YTDGSKS-DSSVGCAFVI----PQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG+ + ++ +G A + Q I +T N K+ + HA LA+ D S
Sbjct: 1028 YVDGAANRETKLGKAGHVTDKGKQKIITLTETTNQKAEL-HAIQLALQD--------SRP 1078
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1079 EVNIVTDSQYALGIIQAQPDRSGSELVNQIIEQL--IKKEKVYLSWVPAHKGIGGNEQVD 1136
Query: 263 LEAKSALENPISHD 276
S + + D
Sbjct: 1137 KLVSSGIRKVLFLD 1150
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag-pol PE=3 SV=3
Length = 1448
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 184 FHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSMSHSNP------LVQSIHEEIS 237
A L+A+ DA E I++DS Q + + HS P LV I EE+
Sbjct: 1075 LQAVLMALQDAGQ--------EVNIVTDS----QYVLGIIHSQPDKSESELVNQIIEEL- 1121
Query: 238 TIPNSTIKFFWCPSHVGIAGNDAAD 262
I I W P+H GI GN+ D
Sbjct: 1122 -IKKERIYLSWVPAHKGIGGNEQID 1145
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 87 ILMNDIPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQV---FQQEFQRNMNENY 143
++ IP ++ +Q+E E+W + + ++ PH V +Q E E
Sbjct: 968 VIWGKIPKFRLPIQKETWETWWTEYWQATW-IPEWEFVNTPHLVKLWYQLE-----TEPI 1021
Query: 144 GDFVQVYTDGSKS-DSSVGCAFVI----PQLHIVKKQTLNPKSSIFHAELLAISDAVSTI 198
Y DG+ + ++ +G A + Q + +T N K+ + A LA+ D
Sbjct: 1022 AGAETYYIDGAANRETKLGKAGYVTDRGKQKVVSLTETTNQKTEL-QAIYLALQD----- 1075
Query: 199 KSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIA 256
S E I++DS AL I + + LV I EE+ I + W P+H GI
Sbjct: 1076 ---SGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL--IKKEKVYLSWVPAHKGIG 1130
Query: 257 GNDAAD 262
GN+ D
Sbjct: 1131 GNEQVD 1136
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 186 AELLAISDAVSTIKSQSIGEAVIISDS---LSALQAISSMSHSNPLVQSIHEEISTIPNS 242
AEL AI A+ S E I++DS L +QA S S+ LV I E++ I
Sbjct: 1059 AELQAICLALQ----DSGSEVNIVTDSQYALGIIQAQPDKSESD-LVNQIIEQL--IKKE 1111
Query: 243 TIKFFWCPSHVGIAGNDAAD 262
I W P+H GI GN+ D
Sbjct: 1112 RIYLSWVPAHKGIGGNEQVD 1131
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 175 QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSI 232
+T N K+ + HA LA+ D+ S E I++DS AL I + + +V I
Sbjct: 1051 ETTNQKTEL-HAIHLALQDSGS--------EVNIVTDSQYALGIIQAQPDRSESEIVNQI 1101
Query: 233 HEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENPISHD 276
E++ I + W P+H GI GN+ D S + + D
Sbjct: 1102 IEKL--IEKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLD 1143
>sp|B7GH71|GCST_ANOFW Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=gcvT PE=3 SV=1
Length = 364
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 219 ISSMSHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAG 257
I+ ++ PL + + ++++T+ ST+KFF HV +AG
Sbjct: 141 IAQLALQGPLAEKVLQQLTTVDLSTMKFFAFADHVDVAG 179
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 186 AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNST 243
AEL AI A+ S E I++DS AL I + + LV I E++ I
Sbjct: 1059 AELQAIQLALQ----DSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL--IKKEK 1112
Query: 244 IKFFWCPSHVGIAGNDAAD 262
+ W P+H GI GN+ D
Sbjct: 1113 VYLSWVPAHKGIGGNEQVD 1131
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 150 YTDGS-KSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVI 208
Y DG+ S G A I Q + Q L ++ AEL AI A+ S + I
Sbjct: 1054 YVDGACNRQSKEGKAGYITQQGKQRVQQLE-NTTNQQAELTAIKMALE----DSGPKVNI 1108
Query: 209 ISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
++DS A+ +++ +PLV+ I ++ + I W P+H GI GN+ D
Sbjct: 1109 VTDSQYAMGILTAQPTQSDSPLVEQIIAQM--VQKEAIYLQWVPAHKGIGGNEEID 1162
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 186 AELLAISDAVSTIKSQSIGEAV-IISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNS 242
AEL AI A+ Q G V I++DS A+ I S + LV I EE+ I
Sbjct: 1074 AELQAILMAL-----QESGRDVNIVTDSQYAMGIIHSQPDKSESELVSQIIEEL--IKKE 1126
Query: 243 TIKFFWCPSHVGIAGNDAAD 262
+ W P+H GI GN+ D
Sbjct: 1127 RVYLSWVPAHKGIGGNEQVD 1146
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 175 QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSI 232
+T N K+ + A LA+ D+ S E I++DS AL I + + LV I
Sbjct: 1054 ETTNQKTEL-QAIQLALQDSGS--------EVNIVTDSQYALGIIQAQPDKSESELVNQI 1104
Query: 233 HEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENPISHDHGIGLTQ 283
E++ I + W P+H GI GN+ D S + + D GI Q
Sbjct: 1105 IEQL--IKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLD-GINKAQ 1152
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 150 YTDGS-KSDSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVI 208
YTDGS S G A I K + L +++ AEL A + A++ S +A I
Sbjct: 1051 YTDGSCNRQSKEGKAGYITDRGRDKVRILE-QTTNQQAELEAFAMALT----DSGPKANI 1105
Query: 209 ISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
I DS + ++ + LV I EE+ I T+ W P+H GI GN D
Sbjct: 1106 IVDSQYVMGIVAGQPTESESKLVNQIIEEM--IKKETLYVAWVPAHKGIGGNQEVD 1159
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 87 ILMNDIPFHKVILQREPKESWLHKKPSCNLSLTLYKKDGMPHQV---FQQEFQ-RNMNEN 142
++ IP ++ +Q+E E+W + + ++ PH V +Q E + E
Sbjct: 969 VIWGKIPKFRLPIQKETWETWWTEHWQATW-IPEWEFVNTPHLVKLWYQLETEPIEGAET 1027
Query: 143 YGDFVQVYTDGSKS-DSSVGCAFVI----PQLHIVKKQTLNPKSSIFHAELLAISDAVST 197
Y Y DG+ + ++ +G A + Q + +T N K+ EL AI A+
Sbjct: 1028 Y------YVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKT-----ELQAIYLALQ- 1075
Query: 198 IKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGI 255
+S E I++DS AL I + + LV I EE+ I W P+H GI
Sbjct: 1076 ---ESGPEVNIVTDSQYALGIIQAQPDKSESELVNQIIEEL--IKKEKFYLSWVPAHKGI 1130
Query: 256 AGNDAADLEAKSALENPISHDHGIGLTQL 284
GN+ D S + + D GI Q+
Sbjct: 1131 GGNEQVDKLVSSGIRKVLFLD-GIDKAQV 1158
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 186 AELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNST 243
AEL AI A+ S E I++DS AL I + + +V I EE+ I
Sbjct: 1063 AELQAIQLALQ----DSEVEVNIVTDSQYALGIIQGQPDTSESEIVNQIIEEL--IKKEK 1116
Query: 244 IKFFWCPSHVGIAGNDAADLEAKSALENPISHD 276
+ W P+H GI GN+ D S + + D
Sbjct: 1117 VYLSWVPAHKGIGGNEQIDKLVSSGIRKVLFLD 1149
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 208 IISDSLSALQAISSM-SHS-NPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
I++DS L I S HS + LV I EE+ I I W P+H GI GN+ D
Sbjct: 1031 IVTDSQYVLGIIQSQPDHSESELVNQIIEEL--IKKEKIYLSWVPAHKGIGGNEQVD 1085
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 175 QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSI 232
+T N K+ + A LA+ D+ S E I++DS AL I + + LV I
Sbjct: 1053 ETTNQKTEL-QAIHLALQDSGS--------EVNIVTDSQYALGIIQAQPDKSESELVNQI 1103
Query: 233 HEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENPISHD 276
E++ I + W P+H GI GN+ D S + + D
Sbjct: 1104 IEQL--IKKDRVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLD 1145
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 175 QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSI 232
+T N K+ + A LA+ D+ S E I++DS AL I + + LV I
Sbjct: 1053 ETTNQKTEL-QAIHLALQDSGS--------EVNIVTDSQYALGIIQAQPDKSESELVNQI 1103
Query: 233 HEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENPISHD 276
E++ I + W P+H GI GN+ D S + + D
Sbjct: 1104 IEQL--IQKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLD 1145
>sp|A7MY21|RNH_VIBHB Ribonuclease H OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=rnhA PE=3 SV=1
Length = 154
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 30/154 (19%)
Query: 147 VQVYTDGS----KSDSSVGCAFVIPQLH--IVKKQTLNPKSSIFHAELLAISDAVSTIKS 200
V+++TDGS G Q + K TL + + E+LA A+ T+K
Sbjct: 5 VEIFTDGSCLGNPGPGGYGIVLRYKQTEKTLAKGYTLTTNNRM---EMLAAVVALQTLKE 61
Query: 201 QSIGEAVIISDSLSALQAISSMSHS----------------NPLVQSIHEEISTIPNSTI 244
+ + +DS Q I+ H+ L Q++ +E + +
Sbjct: 62 PC--QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQALDKETA---RHKV 116
Query: 245 KFFWCPSHVGIAGNDAADLEAKSALENPISHDHG 278
+ W H G N+ D A++A ENP D G
Sbjct: 117 DWHWVKGHAGHRENEICDELARTAAENPTEEDTG 150
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 150 YTDGSKS-DSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVI 208
Y DG+ S ++ +G A + K TL ++ EL AI A+ S E I
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTN-QKTELQAIHLALQ----DSGLEVNI 1094
Query: 209 ISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1095 VTDSQYALGIIQAQPDKSESELVNQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 175 QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM--SHSNPLVQSI 232
+T N K+ + A LA+ D+ S E I++DS AL I + + +V I
Sbjct: 1053 ETTNQKAEL-QAIYLALQDSGS--------EVNIVTDSQYALGIIQAQPDKSESEIVNQI 1103
Query: 233 HEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E++ I + W P+H GI GN+ D
Sbjct: 1104 IEQL--IQKERVYLSWVPAHKGIGGNEQVD 1131
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 150 YTDGSKS-DSSVGCAFVIP----QLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIG 204
Y DG+ S ++ +G A + Q + T N K+ + A LA+ D S
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTEL-QAIHLALQD--------SGL 1090
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1091 EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1085 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1142
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1080 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1137
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1081 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1138
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1078 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1135
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 205 EAVIISDSLSALQAISSM--SHSNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAAD 262
E I++DS AL I + + LV I E++ I + W P+H GI GN+ D
Sbjct: 1079 EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL--IKKEKVYLAWVPAHKGIGGNEQVD 1136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,613,865
Number of Sequences: 539616
Number of extensions: 6555635
Number of successful extensions: 11654
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 11487
Number of HSP's gapped (non-prelim): 205
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)