Query psy2243
Match_columns 405
No_of_seqs 314 out of 1525
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:49:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gmh_A Electron transfer flavo 100.0 7.2E-30 2.4E-34 270.0 2.9 131 230-379 409-540 (584)
2 2kq2_A Ribonuclease H-related 99.9 4.5E-23 1.5E-27 180.5 7.5 127 144-272 4-138 (147)
3 2qkb_A Ribonuclease H1, HS-RNA 99.9 8.9E-22 3.1E-26 173.4 13.5 127 145-271 6-151 (154)
4 3h08_A RNH (ribonuclease H); R 99.9 5.8E-22 2E-26 172.9 9.2 124 145-271 3-144 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.8 2.4E-21 8.1E-26 171.0 10.2 125 146-273 4-145 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.8 5E-21 1.7E-25 169.4 10.4 124 145-271 5-145 (158)
7 3qio_A GAG-POL polyprotein; RN 99.8 1.2E-20 4E-25 165.7 11.7 122 144-271 10-147 (150)
8 3p1g_A Xenotropic murine leuke 99.8 1.5E-20 5.3E-25 167.4 11.7 124 146-272 23-157 (165)
9 1ril_A Ribonuclease H; hydrola 99.8 2.2E-20 7.6E-25 166.6 5.9 124 145-271 7-148 (166)
10 2lsn_A Reverse transcriptase; 99.8 4.6E-18 1.6E-22 151.3 13.0 125 145-270 6-162 (165)
11 3hst_B Protein RV2228C/MT2287; 99.8 5.6E-18 1.9E-22 145.9 12.3 121 146-271 3-133 (141)
12 3u3g_D Ribonuclease H, RNAse H 99.7 6.3E-18 2.1E-22 145.0 9.9 121 146-271 3-137 (140)
13 2ehg_A Ribonuclease HI; RNAse 99.7 1.9E-17 6.5E-22 144.5 11.4 121 147-271 2-134 (149)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 5.6E-17 1.9E-21 170.3 13.4 118 144-269 434-555 (555)
15 2zd1_A Reverse transcriptase/r 99.7 5.1E-17 1.7E-21 170.8 9.7 117 144-268 437-557 (557)
16 1zbf_A Ribonuclease H-related 99.3 1.1E-12 3.9E-17 113.5 1.9 116 145-262 10-138 (142)
17 4htu_A Ribonuclease H, RNAse H 99.0 3.5E-10 1.2E-14 96.5 5.2 92 145-238 4-104 (134)
18 1rw3_A POL polyprotein; RNA an 62.3 4.6 0.00016 40.4 3.4 72 145-221 345-427 (455)
19 2z3g_A Blasticidin-S deaminase 39.8 37 0.0013 27.9 4.9 55 158-213 27-81 (130)
20 2fr5_A Cytidine deaminase; tet 37.0 50 0.0017 27.7 5.3 56 157-213 35-92 (146)
21 2zd1_B P51 RT; P51/P66, hetero 31.3 70 0.0024 31.5 6.2 68 144-214 322-398 (428)
22 1uwz_A Cytidine deaminase; CDD 29.1 75 0.0026 26.2 5.1 54 159-213 25-80 (136)
23 2d30_A Cytidine deaminase; pur 25.3 81 0.0028 26.3 4.6 54 159-213 34-89 (141)
24 3mpz_A Cytidine deaminase; ssg 20.7 1.1E+02 0.0039 25.7 4.6 53 159-212 47-101 (150)
25 1r5t_A Cytidine deaminase; zin 20.5 1.7E+02 0.0058 24.1 5.7 55 158-213 32-89 (142)
No 1
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=99.95 E-value=7.2e-30 Score=270.03 Aligned_cols=131 Identities=52% Similarity=0.811 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCCCceEEEEecCCC-CCcccHHHHHHHHHHhcCCCCCCCCccccccccCCCCCCCCCCCCCccccCCccC
Q psy2243 230 QSIHEEISTIPNSTIKFFWCPSHV-GIAGNDAADLEAKSALENPISHDHGIGLTQLSGLFAHTPKPQKGDNTFLKPASEC 308 (405)
Q Consensus 230 ~~I~~~l~~lr~~~v~f~WVpgH~-Gi~gNe~AD~lAk~a~~~~~~~~~~~~~~~l~g~~pwTl~~~~~D~~~~~~a~~~ 308 (405)
+|+.+++...++.+-.|. .. |.... ++..+++. ++++|+.||||+|.++|++++++++++
T Consensus 409 ~~v~~~l~~~r~~~~~~~----~~~g~~~~-----~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (584)
T 2gmh_A 409 SWVWKELYSVRNIRPSCH----GILGVYGG-----MIYTGIFY----------WIFRGMEPWTLKHKGSDSDQLKPAKDC 469 (584)
T ss_dssp SHHHHHHHHTTTTTGGGG----STTTHHHH-----HHHHHHHT----------TTTTTCCSCCCCCCSCGGGCCCCGGGS
T ss_pred hHHHHHHHHHhChhHHHH----HhhccHHH-----HHHHHHHH----------HHcCCCCCCccCCCCCCchhhhhHHhc
Confidence 578888888777654441 11 44444 34667754 778899999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccceeccCCCCCCCCCcceeccCCCCcccccccCcCCcccccccCceeEeecCCC
Q psy2243 309 KPIEYPKPDGQVSFDLLSSVALTGTNHEGDQPAHLTLKDDSVPVNTNLAVYDGPEGRFCPAGKLENHNTQN 379 (405)
Q Consensus 309 ~~i~ypkpdg~ltfd~~~s~~~s~t~h~~~qp~hl~~~~~~~~~~~~~~~~~~~~~~~cpa~vye~~~~~~ 379 (405)
+||+||||||+||||+|||||+|||+|+|||||||+|+|.++|.+.|+++|.+||++||||||||+|++++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~~~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~ 540 (584)
T 2gmh_A 470 TPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQ 540 (584)
T ss_dssp CCCCCCCCCSSSSCCHHHHHHTTTCBCCSSSCCSEEESSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECSS
T ss_pred CCCCCCCccccccccccchhhhccccccCCCCCeEEEcCcccchhhchhhhcchhhhcCChhhEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987543
No 2
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=4.5e-23 Score=180.53 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=99.5
Q ss_pred CCcEEEEecCCCCCCCceEEEEeecCcee--Eee-cC--CC--CccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHH
Q psy2243 144 GDFVQVYTDGSKSDSSVGCAFVIPQLHIV--KKQ-TL--NP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSAL 216 (405)
Q Consensus 144 ~~~~~iyTDGS~~~~~~G~g~v~~~~~~~--~~~-~l--~~--~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al 216 (405)
++.+.||||||+..+.+|+|+|+...+.. .+. .. +. .++++.||+.|++.||+.+.+.+. .+.|+|||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 46789999999999889999998765443 233 22 21 368999999999999998877666 899999999888
Q ss_pred HHHhccCCCC-hhHHHHHHHHHcCCCCceEEEEecCCCCCcccHHHHHHHHHHhcCC
Q psy2243 217 QAISSMSHSN-PLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSALENP 272 (405)
Q Consensus 217 ~~l~~~~~~~-~~~~~I~~~l~~lr~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~~ 272 (405)
+.+.+.+..+ +......+.+.++.. .|.|.|||||+|++||+.||+||++|+...
T Consensus 83 ~w~~~~w~~~~~~~~~~~~l~~~l~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 83 FWATGEWKAKNEFTQAYAKLMNQYRG-IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp HHTTSSSSCCHHHHHHHHCGGGGGST-TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCccCCcchHHHHHHHHHhcC-CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 8777765533 233444445555554 899999999999999999999999999764
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=8.9e-22 Score=173.36 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=100.0
Q ss_pred CcEEEEecCCCCCC-----CceEEEEeecCce-eEeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHH
Q psy2243 145 DFVQVYTDGSKSDS-----SVGCAFVIPQLHI-VKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQA 218 (405)
Q Consensus 145 ~~~~iyTDGS~~~~-----~~G~g~v~~~~~~-~~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~ 218 (405)
+.+.||||||+..+ .+|+|+++.+++. ..+..+...++++.||+.|++.||+.+.+.+...+.|+|||+.+++.
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~ 85 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTING 85 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhh
Confidence 56899999999832 2799998876432 23445655689999999999999999987777899999999999999
Q ss_pred Hhcc--------CC---CCh-hHHHHHHHHHcC-CCCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 219 ISSM--------SH---SNP-LVQSIHEEISTI-PNSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 219 l~~~--------~~---~~~-~~~~I~~~l~~l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
|+.+ +. +.+ ....++++|.++ .+..|.|.|||||+|+++|+.||+||++|+..
T Consensus 86 i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 86 ITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 9873 11 111 234566666543 35789999999999999999999999999975
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.86 E-value=5.8e-22 Score=172.89 Aligned_cols=124 Identities=20% Similarity=0.191 Sum_probs=93.1
Q ss_pred CcEEEEecCCCCC--CCceEEEEeecCceeE--eecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHh
Q psy2243 145 DFVQVYTDGSKSD--SSVGCAFVIPQLHIVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 220 (405)
Q Consensus 145 ~~~~iyTDGS~~~--~~~G~g~v~~~~~~~~--~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~ 220 (405)
..+.||||||+.. +..|+|+++..++... +..++ .++++.||+.|++.||+.+.+ ...+.|+|||+++++.|+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 3689999999984 4689999987755332 22333 688999999999999999864 578999999999999998
Q ss_pred ccC------------CCCh-hHHHHHHHHHcC-CCCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 221 SMS------------HSNP-LVQSIHEEISTI-PNSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 221 ~~~------------~~~~-~~~~I~~~l~~l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
..+ .+.+ ..+.+++++.++ ....|.|.|||||+|+++|+.||+||++|++.
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 721 1111 123444444433 23579999999999999999999999999964
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.85 E-value=2.4e-21 Score=170.96 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=96.5
Q ss_pred cEEEEecCCCCC--CCceEEEEeecCcee--EeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHhc
Q psy2243 146 FVQVYTDGSKSD--SSVGCAFVIPQLHIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 221 (405)
Q Consensus 146 ~~~iyTDGS~~~--~~~G~g~v~~~~~~~--~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~~ 221 (405)
.+.||||||+.. +.+|+|+++...+.. .+..++ .++++.||+.|++.||+.+.+ ...+.|+|||+.+++.|+.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCC-CCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 588999999983 468999998764432 222332 578999999999999998864 3789999999999999997
Q ss_pred c--------CC---CChh-HHHHHHHHHcC-CCCceEEEEecCCCCCcccHHHHHHHHHHhcCCC
Q psy2243 222 M--------SH---SNPL-VQSIHEEISTI-PNSTIKFFWCPSHVGIAGNDAADLEAKSALENPI 273 (405)
Q Consensus 222 ~--------~~---~~~~-~~~I~~~l~~l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~~~ 273 (405)
+ +. +.++ ...++++|.++ ....|.|.|||||+|+++|+.||+||+.|+..+.
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 2 21 1222 24556666554 3468999999999999999999999999998653
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.84 E-value=5e-21 Score=169.42 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=94.9
Q ss_pred CcEEEEecCCCC--CCCceEEEEeecCceeE--eecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHh
Q psy2243 145 DFVQVYTDGSKS--DSSVGCAFVIPQLHIVK--KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 220 (405)
Q Consensus 145 ~~~~iyTDGS~~--~~~~G~g~v~~~~~~~~--~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~ 220 (405)
..+.||||||+. ++.+|+|+|+...+... +..++ .++++.||+.|++.||+.+.+ ...+.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 368999999998 35679999987654322 22333 578999999999999998754 378999999999999998
Q ss_pred c--------cCC---CChh-HHHHHHHHHcC-CCCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 221 S--------MSH---SNPL-VQSIHEEISTI-PNSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 221 ~--------~~~---~~~~-~~~I~~~l~~l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
. .+. +.+. ...+++++.++ ....|.|.|||||+|+++|+.||+||++|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 221 1222 23455554443 34689999999999999999999999999975
No 7
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.84 E-value=1.2e-20 Score=165.73 Aligned_cols=122 Identities=23% Similarity=0.283 Sum_probs=93.4
Q ss_pred CCcEEEEecCCCC--CCCceEEEEeecCceeEeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHhc
Q psy2243 144 GDFVQVYTDGSKS--DSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 221 (405)
Q Consensus 144 ~~~~~iyTDGS~~--~~~~G~g~v~~~~~~~~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~~ 221 (405)
.+.+.||||||+. ++..|+|+++..+... ...+ ..++++.||+.|++.||+.+ ...+.|+|||+++++.|+.
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQK-VVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEE-EEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 3568999999987 4567899888765432 2234 36899999999999999985 4789999999999999987
Q ss_pred cC-----------CCCh-hHHHHHHHHHc-C-CCCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 222 MS-----------HSNP-LVQSIHEEIST-I-PNSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 222 ~~-----------~~~~-~~~~I~~~l~~-l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
+. .+.+ ..+.+++++.+ + +...|.|.|||||+|++||+.||+||++|+++
T Consensus 84 w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 84 WIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 51 1112 23455555443 2 35789999999999999999999999999975
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.83 E-value=1.5e-20 Score=167.41 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=95.4
Q ss_pred cEEEEecCCCC--CCCceEEEEeecCceeE-eecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHhcc
Q psy2243 146 FVQVYTDGSKS--DSSVGCAFVIPQLHIVK-KQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISSM 222 (405)
Q Consensus 146 ~~~iyTDGS~~--~~~~G~g~v~~~~~~~~-~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~~~ 222 (405)
.+.||||||+. +|..|+|+++...+... ...+...++++.||++|++.||+.+ ....+.|+|||+++++.|-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 58999999998 57789999877654332 2234457899999999999999998 267899999999999998322
Q ss_pred CCCChh-HHHHHHHH-HcC-CCCceEEEEecCCCC-----CcccHHHHHHHHHHhcCC
Q psy2243 223 SHSNPL-VQSIHEEI-STI-PNSTIKFFWCPSHVG-----IAGNDAADLEAKSALENP 272 (405)
Q Consensus 223 ~~~~~~-~~~I~~~l-~~l-r~~~v~f~WVpgH~G-----i~gNe~AD~lAk~a~~~~ 272 (405)
..+.++ .+.+++++ .++ .+..|.|.|||||+| ++|||.||+||++|+.++
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 223332 24545555 333 357899999999999 999999999999999753
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.80 E-value=2.2e-20 Score=166.61 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=93.6
Q ss_pred CcEEEEecCCCCC--CCceEEEEeecCcee--EeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHh
Q psy2243 145 DFVQVYTDGSKSD--SSVGCAFVIPQLHIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 220 (405)
Q Consensus 145 ~~~~iyTDGS~~~--~~~G~g~v~~~~~~~--~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~ 220 (405)
..+.||||||+.. +..|+|+|+...+.. .+... ..++++.||+.|++.||+.+.+ ...+.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHh
Confidence 3578999999983 467999998754322 22222 2578999999999999998754 358999999999999999
Q ss_pred c-c--------CC---CChh-HHHHHHHHHcC-CCCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 221 S-M--------SH---SNPL-VQSIHEEISTI-PNSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 221 ~-~--------~~---~~~~-~~~I~~~l~~l-r~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
. + +. +.++ ...+++++.++ ....|.|.|||||+|+++|+.||+||++|+..
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 148 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQS 148 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence 8 1 21 1222 23455555443 34689999999999999999999999999975
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.76 E-value=4.6e-18 Score=151.32 Aligned_cols=125 Identities=21% Similarity=0.185 Sum_probs=89.0
Q ss_pred CcEEEEecCCCC--CCC-----ceEEEEeecCc----eeEeecCC-CCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Q psy2243 145 DFVQVYTDGSKS--DSS-----VGCAFVIPQLH----IVKKQTLN-PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 212 (405)
Q Consensus 145 ~~~~iyTDGS~~--~~~-----~G~g~v~~~~~----~~~~~~l~-~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs 212 (405)
..++||||||+. +|. .|+|+++...+ ....+..+ ...+.+.||+.|+..||+.+.+. ..+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeCh
Confidence 358999999998 333 79999876432 12223332 35677889999999888877654 3569999999
Q ss_pred HHHHHHHhcc--------CC---CChh-HHHHHHHHHcC--CCCceEEEEecCCCCC------cccHHHHHHHHHHhc
Q psy2243 213 LSALQAISSM--------SH---SNPL-VQSIHEEISTI--PNSTIKFFWCPSHVGI------AGNDAADLEAKSALE 270 (405)
Q Consensus 213 ~~al~~l~~~--------~~---~~~~-~~~I~~~l~~l--r~~~v~f~WVpgH~Gi------~gNe~AD~lAk~a~~ 270 (405)
++++++|+.+ +. +.++ ...++++|.++ ....|.|.|||||+|. +||+.||+||++|+.
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 9999999753 11 2222 24455555432 1357999999999995 589999999999984
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.75 E-value=5.6e-18 Score=145.91 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=95.1
Q ss_pred cEEEEecCCCC--CCCceEEEEeecC--c-ee--EeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHH
Q psy2243 146 FVQVYTDGSKS--DSSVGCAFVIPQL--H-IV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQA 218 (405)
Q Consensus 146 ~~~iyTDGS~~--~~~~G~g~v~~~~--~-~~--~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~ 218 (405)
.+.||||||+. ++.+|+|+++.+. + .. .+..++ .++++.||+.|++.||+.+.+.+..++.|+|||+.+++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 48899999998 4578999998763 2 22 223333 689999999999999999988778899999999999999
Q ss_pred HhccCC-CChhHHHHHHHHHcCC--CCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 219 ISSMSH-SNPLVQSIHEEISTIP--NSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 219 l~~~~~-~~~~~~~I~~~l~~lr--~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
+++.+. .++....+++++.++. ...|.|.|||+ .+|+.||+||++|++.
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 998654 4444444555555442 36899999994 8999999999999964
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.73 E-value=6.3e-18 Score=145.03 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=92.4
Q ss_pred cEEEEecCCCC--CCCceEEEEeec-Cc-ee--EeecCCCCccchHHHHHHHHHHHHHHHhcCCC----cEEEEeCcHHH
Q psy2243 146 FVQVYTDGSKS--DSSVGCAFVIPQ-LH-IV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIG----EAVIISDSLSA 215 (405)
Q Consensus 146 ~~~iyTDGS~~--~~~~G~g~v~~~-~~-~~--~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~----~i~I~sDs~~a 215 (405)
.+.||||||+. ++.+|+|+++.+ .+ .. .+..++ .++++.||+.|++.||+.+.+.+.. .+.|+|||+.+
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 58999999998 356899999876 22 22 222333 4789999999999999999876656 89999999999
Q ss_pred HHHHhccCC-CChhHHHHHHHHHcC--CC-CceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 216 LQAISSMSH-SNPLVQSIHEEISTI--PN-STIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 216 l~~l~~~~~-~~~~~~~I~~~l~~l--r~-~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
++.+++.+. .++-...+++++.++ .+ ..|.|.||| .++|+.||+||++|++.
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 999999765 343334444444433 22 479999999 48999999999999863
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.72 E-value=1.9e-17 Score=144.52 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=93.3
Q ss_pred EEEEecCCCC---CCCceE-EEEeecCcee-E--eecCC---CCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHH
Q psy2243 147 VQVYTDGSKS---DSSVGC-AFVIPQLHIV-K--KQTLN---PKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSAL 216 (405)
Q Consensus 147 ~~iyTDGS~~---~~~~G~-g~v~~~~~~~-~--~~~l~---~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al 216 (405)
+.||||||+. ++.+|+ |+++.+.+.. . +..++ ..++++.||+.|++.||+.+.+.+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999997 367885 9888764433 2 22333 36889999999999999999887778899999999999
Q ss_pred HHHhccCC-CChhHHHHHHHHHcCC-CCceEEEEecCCCCCcccHHHHHHHHHHhcC
Q psy2243 217 QAISSMSH-SNPLVQSIHEEISTIP-NSTIKFFWCPSHVGIAGNDAADLEAKSALEN 271 (405)
Q Consensus 217 ~~l~~~~~-~~~~~~~I~~~l~~lr-~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~~~ 271 (405)
+.+++++. .++....+++++.++. +..|.|.|||+ .+|+.||+||++|+..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 99999765 3334455555554431 23599999997 6899999999999964
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.70 E-value=5.6e-17 Score=170.35 Aligned_cols=118 Identities=26% Similarity=0.329 Sum_probs=94.0
Q ss_pred CCcEEEEecCCCCC--CCceEEEEeecCceeEeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHhc
Q psy2243 144 GDFVQVYTDGSKSD--SSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 221 (405)
Q Consensus 144 ~~~~~iyTDGS~~~--~~~G~g~v~~~~~~~~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~~ 221 (405)
.+.+.+|||||+.. +..|+|+++..++.. ...++ .++++.||+.|+..||+. ....+.|+|||+.+++.+++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~~-~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-eccCC-CCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 35699999999983 457899888765432 22333 678999999999999987 46789999999999999998
Q ss_pred cCC--CChhHHHHHHHHHcCCCCceEEEEecCCCCCcccHHHHHHHHHHh
Q psy2243 222 MSH--SNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSAL 269 (405)
Q Consensus 222 ~~~--~~~~~~~I~~~l~~lr~~~v~f~WVpgH~Gi~gNe~AD~lAk~a~ 269 (405)
+.. ..++.+.+.+.+.+ ...|.|.|||||+|++||+.||+||++|+
T Consensus 508 ~~~~~~~~l~~~~~~~~~~--~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTESESKIVNQIIEEMIK--KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSEESCHHHHHHHHHHHH--CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcc--CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 653 45555555555444 46799999999999999999999999874
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.68 E-value=5.1e-17 Score=170.77 Aligned_cols=117 Identities=25% Similarity=0.300 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCC--CCCceEEEEeecCceeEeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHhc
Q psy2243 144 GDFVQVYTDGSKS--DSSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAISS 221 (405)
Q Consensus 144 ~~~~~iyTDGS~~--~~~~G~g~v~~~~~~~~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~~ 221 (405)
.+.+.||||||+. ++..|+|+++..++.. .... ..++++.||+.|++.||+.+ ...+.|+|||+.+++.|++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~-~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQK-VVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEE-EecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 3568999999987 3457888888755432 2233 36899999999999999987 5789999999999999998
Q ss_pred cCC--CChhHHHHHHHHHcCCCCceEEEEecCCCCCcccHHHHHHHHHH
Q psy2243 222 MSH--SNPLVQSIHEEISTIPNSTIKFFWCPSHVGIAGNDAADLEAKSA 268 (405)
Q Consensus 222 ~~~--~~~~~~~I~~~l~~lr~~~v~f~WVpgH~Gi~gNe~AD~lAk~a 268 (405)
+.. ..++.+.+.+++.+ ...|.|.|||||+|++||+.||+||++|
T Consensus 511 ~~~~~~~~l~~~~~~~l~~--~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 511 QPDKSESELVNQIIEQLIK--KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCSEESSHHHHHHHHHHHH--CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCccCCHHHHHHHHHHHhc--CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 654 34555555555554 3579999999999999999999999986
No 16
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.25 E-value=1.1e-12 Score=113.54 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=82.9
Q ss_pred CcEEEEecCCCC--CCCceEEEEeecCceeEe--ecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHh
Q psy2243 145 DFVQVYTDGSKS--DSSVGCAFVIPQLHIVKK--QTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 220 (405)
Q Consensus 145 ~~~~iyTDGS~~--~~~~G~g~v~~~~~~~~~--~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~ 220 (405)
..+.||||||+. +|.+|+|+|+...+.... ..++ .++++.||++|++.||+.+.+... .+.|+|||+.+++.+.
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 457799999997 467899999875443322 2233 578999999999999999987655 8999999999999999
Q ss_pred ccCC-----CChhHHHHHHHHHcC----CCCceEEEEecCCCCCcccHHHH
Q psy2243 221 SMSH-----SNPLVQSIHEEISTI----PNSTIKFFWCPSHVGIAGNDAAD 262 (405)
Q Consensus 221 ~~~~-----~~~~~~~I~~~l~~l----r~~~v~f~WVpgH~Gi~gNe~AD 262 (405)
+.+. .......++++|.++ +...+....+.-|++..||.-||
T Consensus 88 ~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 88 DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred cCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 8762 122345666665443 22333333444478888888776
No 17
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.98 E-value=3.5e-10 Score=96.51 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=65.5
Q ss_pred CcEEEEecCCCC--CCCceEEEEeecCcee--EeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHh
Q psy2243 145 DFVQVYTDGSKS--DSSVGCAFVIPQLHIV--KKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSLSALQAIS 220 (405)
Q Consensus 145 ~~~~iyTDGS~~--~~~~G~g~v~~~~~~~--~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~~al~~l~ 220 (405)
....||||||+. +|..|+|+|+...+.. ....++ .+|++.||++|++.||+.+.+.+.. +.|+|||+.+++.|.
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 346799999998 4568896666554432 222333 6899999999999999999875433 899999999999998
Q ss_pred ccCC----CCh-hHHHHHHHHHc
Q psy2243 221 SMSH----SNP-LVQSIHEEIST 238 (405)
Q Consensus 221 ~~~~----~~~-~~~~I~~~l~~ 238 (405)
+..- +.+ ....+|++|.+
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~ 104 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDE 104 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHH
T ss_pred cCCcccCCCCCccCHHHHHHHHH
Confidence 7532 122 34566665553
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=62.34 E-value=4.6 Score=40.41 Aligned_cols=72 Identities=13% Similarity=0.002 Sum_probs=45.3
Q ss_pred CcEEEEecCCCCCCCceEEEEeecC--c--e-e--EeecCC---CCccchHHHHHHHHHHHHHHHhc-CCCcEEEEeCcH
Q psy2243 145 DFVQVYTDGSKSDSSVGCAFVIPQL--H--I-V--KKQTLN---PKSSIFHAELLAISDAVSTIKSQ-SIGEAVIISDSL 213 (405)
Q Consensus 145 ~~~~iyTDGS~~~~~~G~g~v~~~~--~--~-~--~~~~l~---~~ssv~~AEl~AI~~AL~~~~~~-~~~~i~I~sDs~ 213 (405)
..+.+|||+|.. .+| +|+.+. + . . .+..+. ..-+++..|++||..|++..... ....++|+||+.
T Consensus 345 ~~~~l~~DAS~~--~~g--avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAK--GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CTTSCEEEEEEC--SSS--BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CcEEEEEeccCC--cce--eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 456899999843 233 344332 1 1 1 122333 24567889999999999887642 456899999996
Q ss_pred HHHHHHhc
Q psy2243 214 SALQAISS 221 (405)
Q Consensus 214 ~al~~l~~ 221 (405)
++..+.+
T Consensus 421 -~~~~l~~ 427 (455)
T 1rw3_A 421 -VEALVKQ 427 (455)
T ss_dssp -TTTTSSS
T ss_pred -HHHHhCC
Confidence 5554443
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=39.76 E-value=37 Score=27.85 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=34.8
Q ss_pred CCceEEEEeecCceeEeecCCCCccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcH
Q psy2243 158 SSVGCAFVIPQLHIVKKQTLNPKSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 213 (405)
Q Consensus 158 ~~~G~g~v~~~~~~~~~~~l~~~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~ 213 (405)
-.+|++++..++.+.....+........||..||..|... -....+.+++++|..
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~~ 81 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNEN 81 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETTT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECCC
Confidence 3578887777665544333332344677999999999864 122345677888743
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=37.04 E-value=50 Score=27.71 Aligned_cols=56 Identities=23% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCCceEEEEeecCceeEeecCCC--CccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcH
Q psy2243 157 DSSVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 213 (405)
Q Consensus 157 ~~~~G~g~v~~~~~~~~~~~l~~--~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~ 213 (405)
+..+|++++..++.+....-+.. ......||..||..|... -......+.|++|..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 34688888777776654433332 223567999999999865 222346788888754
No 21
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=31.30 E-value=70 Score=31.50 Aligned_cols=68 Identities=9% Similarity=-0.069 Sum_probs=41.2
Q ss_pred CCcEEEEecCCCCCCCceEEEEeecCc-e-eEeecCC--CCccchHHHHHH-HHHHHHHHHhc----CCCcEEEEeCcHH
Q psy2243 144 GDFVQVYTDGSKSDSSVGCAFVIPQLH-I-VKKQTLN--PKSSIFHAELLA-ISDAVSTIKSQ----SIGEAVIISDSLS 214 (405)
Q Consensus 144 ~~~~~iyTDGS~~~~~~G~g~v~~~~~-~-~~~~~l~--~~ssv~~AEl~A-I~~AL~~~~~~----~~~~i~I~sDs~~ 214 (405)
...+.++||+|.. .++|+++.+.+ . ..+.++. ..-....-|++| |..||+..... ....++++||.+.
T Consensus 322 ~~~~~l~~das~~---g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET---TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC---CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 3468999999953 14566666543 2 2233332 233455567777 99999875431 2345677899875
No 22
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=29.10 E-value=75 Score=26.17 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=34.2
Q ss_pred CceEEEEeecCceeEeecCCC--CccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcH
Q psy2243 159 SVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 213 (405)
Q Consensus 159 ~~G~g~v~~~~~~~~~~~l~~--~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~ 213 (405)
.+|++++..++.+....-+.. ..-...||..||..|... -......+.+++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 577777666665554333332 234577999999999875 223356788888753
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=25.30 E-value=81 Score=26.26 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=35.3
Q ss_pred CceEEEEeecCceeEeecCCC--CccchHHHHHHHHHHHHHHHhcCCCcEEEEeCcH
Q psy2243 159 SVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDSL 213 (405)
Q Consensus 159 ~~G~g~v~~~~~~~~~~~l~~--~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs~ 213 (405)
.||++++..++.+....-+.. ......||..||..|+..- ......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 678887777776554443332 2334679999999998642 22346688888864
No 24
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=20.71 E-value=1.1e+02 Score=25.71 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=34.5
Q ss_pred CceEEEEeecCceeEeecCCC--CccchHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Q psy2243 159 SVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQSIGEAVIISDS 212 (405)
Q Consensus 159 ~~G~g~v~~~~~~~~~~~l~~--~ssv~~AEl~AI~~AL~~~~~~~~~~i~I~sDs 212 (405)
.||+++...++.+....-+.. ...-..||-.||+.|+..- ......+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 689988888877665444432 2234669999999998642 2234556777664
No 25
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=20.51 E-value=1.7e+02 Score=24.14 Aligned_cols=55 Identities=24% Similarity=0.186 Sum_probs=35.9
Q ss_pred CCceEEEEeecCceeEeecCCC--CccchHHHHHHHHHHHHHHHhcC-CCcEEEEeCcH
Q psy2243 158 SSVGCAFVIPQLHIVKKQTLNP--KSSIFHAELLAISDAVSTIKSQS-IGEAVIISDSL 213 (405)
Q Consensus 158 ~~~G~g~v~~~~~~~~~~~l~~--~ssv~~AEl~AI~~AL~~~~~~~-~~~i~I~sDs~ 213 (405)
-.+|+++...++.+....-+.. ......||..||..|...- ... .+.+.+++|..
T Consensus 32 f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G-~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 32 FRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAG-HRSGWKCMVICGDSE 89 (142)
T ss_dssp CCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCSCCCEEEEEESCS
T ss_pred CCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCceEEEEEEeCCC
Confidence 4678887777766654443432 2345679999999998642 223 56788888754
Done!